Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 322 of 427
Found at i:93829252 original size:26 final size:26
Alignment explanation
Indices: 93829215--93829298 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
93829205 TGATATAAAT
* *
93829215 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93829241 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
93829267 TGATATTGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93829293 TGATAA
1 TGATAA
93829299 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:93830805 original size:26 final size:26
Alignment explanation
Indices: 93830776--93830828 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
93830766 TTTACAGTTT
93830776 TACCCCTAGGAGGTAAATT-ACCGAAA
1 TACCCCTAGG-GGTAAATTGACCGAAA
* *
93830802 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGGTAAATTGACCGAAA
93830828 T
1 T
93830829 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGGTAAATTGACCGAAA
Found at i:93834644 original size:7 final size:7
Alignment explanation
Indices: 93834629--93834658 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
93834619 TGGAAACATT
*
93834629 CACTAAG
1 CACTGAG
93834636 CACTGAG
1 CACTGAG
93834643 CACTGAG
1 CACTGAG
93834650 CACTGAG
1 CACTGAG
93834657 CA
1 CA
93834659 AAACATAGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.33, C:0.30, G:0.23, T:0.13
Consensus pattern (7 bp):
CACTGAG
Found at i:93839890 original size:21 final size:22
Alignment explanation
Indices: 93839831--93839894 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
93839821 CACAAGCATT
* *
93839831 ATACGACACATAAAGTGTCTGA
1 ATACGACACATATAGTGCCTGA
** *
93839853 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
93839873 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
93839895 TCGGCAAAGC
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:93840838 original size:20 final size:20
Alignment explanation
Indices: 93840813--93840858 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
93840803 ATTGGGCCTT
93840813 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
93840833 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
93840852 GCCCATA
1 GCCCATA
93840859 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:93840867 original size:19 final size:20
Alignment explanation
Indices: 93840825--93840868 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
93840815 CCATATTAAC
** *
93840825 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
93840845 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
93840864 ACAGT
1 ACAGT
93840869 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:93844674 original size:17 final size:18
Alignment explanation
Indices: 93844652--93844688 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
93844642 ACAAATATAA
93844652 TGTTTTTGA-ATAAAACT
1 TGTTTTTGAGATAAAACT
93844669 TGTTTTTGAGATAAAACT
1 TGTTTTTGAGATAAAACT
93844687 TG
1 TG
93844689 ATAAAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.46
Consensus pattern (18 bp):
TGTTTTTGAGATAAAACT
Found at i:93847725 original size:10 final size:10
Alignment explanation
Indices: 93847712--93847746 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
93847702 ATTCATTTCA
93847712 ATTCCCTGTC
1 ATTCCCTGTC
93847722 ATTCCCTGTC
1 ATTCCCTGTC
*
93847732 AATTTCCTGTC
1 -ATTCCCTGTC
93847743 ATTC
1 ATTC
93847747 ACAACTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.14, C:0.34, G:0.09, T:0.43
Consensus pattern (10 bp):
ATTCCCTGTC
Found at i:93847742 original size:11 final size:11
Alignment explanation
Indices: 93847709--93847743 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
93847699 ATCATTCATT
93847709 TCAATTCCCTG
1 TCAATTCCCTG
93847720 TC-ATTCCCTG
1 TCAATTCCCTG
*
93847730 TCAATTTCCTG
1 TCAATTCCCTG
93847741 TCA
1 TCA
93847744 TTCACAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.17, C:0.34, G:0.09, T:0.40
Consensus pattern (11 bp):
TCAATTCCCTG
Found at i:93850466 original size:68 final size:68
Alignment explanation
Indices: 93850373--93850557 Score: 271
Period size: 68 Copynumber: 2.7 Consensus size: 68
93850363 ATATGGCACT
* * * * * * *
93850373 ATAGCTTAGTTGTAGCCTTACACAATATGATCCCATGTTTATTGTTCTGGCAGACTTTATATGTT
1 ATAGCCTAGTTGTGGTCTTACACAATATAATCCCATGTTTATTGTCCTGGCAAACTTCATATGTT
93850438 GCC
66 GCC
* * * *
93850441 ATAGCCTAGTTGTGGTCTTACACAATATAAACCCTTTTTTGTTGTCCTGGCAAACTTCATATGTT
1 ATAGCCTAGTTGTGGTCTTACACAATATAATCCCATGTTTATTGTCCTGGCAAACTTCATATGTT
93850506 GCC
66 GCC
93850509 ATAGCCTAGTTGTGGTCTTACACAATATAATCCCATGTTTATTGTCCTG
1 ATAGCCTAGTTGTGGTCTTACACAATATAATCCCATGTTTATTGTCCTG
93850558 ACGGACTATT
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 102 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (68 bp):
ATAGCCTAGTTGTGGTCTTACACAATATAATCCCATGTTTATTGTCCTGGCAAACTTCATATGTT
GCC
Found at i:93851585 original size:13 final size:13
Alignment explanation
Indices: 93851567--93851594 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93851557 ATTATTAAAT
93851567 TAAATAGTAAAAC
1 TAAATAGTAAAAC
93851580 TAAATAGTAAAAC
1 TAAATAGTAAAAC
93851593 TA
1 TA
93851595 TTAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (13 bp):
TAAATAGTAAAAC
Found at i:93866504 original size:11 final size:11
Alignment explanation
Indices: 93866488--93866513 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
93866478 GAAGAAGCAC
93866488 AAAGAAAAAGA
1 AAAGAAAAAGA
93866499 AAAGAAAAAGA
1 AAAGAAAAAGA
93866510 AAAG
1 AAAG
93866514 GAAATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:93866510 original size:17 final size:17
Alignment explanation
Indices: 93866488--93866530 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
93866478 GAAGAAGCAC
93866488 AAAGAAAAAGAAA-AGAA
1 AAAGAAAAAGAAATA-AA
*
93866505 AAAGAAAAGGAAATAAA
1 AAAGAAAAAGAAATAAA
*
93866522 AATGAAAAA
1 AAAGAAAAA
93866531 AGAGGGAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (17 bp):
AAAGAAAAAGAAATAAA
Found at i:93867384 original size:2 final size:2
Alignment explanation
Indices: 93867377--93867419 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
93867367 TGGGTGAATC
* *
93867377 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93867419 T
1 T
93867420 GCATGAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:93868782 original size:2 final size:2
Alignment explanation
Indices: 93868775--93868817 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
93868765 GACATGCATA
93868775 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93868817 A
1 A
93868818 AGCTACTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:93869681 original size:32 final size:32
Alignment explanation
Indices: 93869637--93869697 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
93869627 ACCCACAATG
*
93869637 TAGATAAAAAATAATGA-TATTTGAAATATTT
1 TAGATAAAAAATAATAATTATTTGAAATATTT
93869668 TAGATATAAAAATAATAATTATTTGAAATA
1 TAGATA-AAAAATAATAATTATTTGAAATA
93869698 ATTATTTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 6 0.22
32 10 0.37
33 11 0.41
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (32 bp):
TAGATAAAAAATAATAATTATTTGAAATATTT
Found at i:93871520 original size:3 final size:3
Alignment explanation
Indices: 93871507--93871563 Score: 96
Period size: 3 Copynumber: 18.7 Consensus size: 3
93871497 AGAAAAATTC
*
93871507 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
93871553 AAT AAT AAT AA
1 AAT AAT AAT AA
93871564 ATGATATGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:93872349 original size:28 final size:28
Alignment explanation
Indices: 93872325--93872402 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
93872315 CTTACATAAC
**
93872325 AGGTTTGCATATAGGGTTTGCACATACA
1 AGGTTTGCATATAGGGTTCACACATACA
* * *
93872353 AAGTTTGCATGTAGAGTTCACACATACA
1 AGGTTTGCATATAGGGTTCACACATACA
* *
93872381 AGGTTCGCATATAAGGTTCACA
1 AGGTTTGCATATAGGGTTCACA
93872403 TACTAAATCA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (28 bp):
AGGTTTGCATATAGGGTTCACACATACA
Found at i:93872467 original size:23 final size:24
Alignment explanation
Indices: 93872391--93872520 Score: 140
Period size: 24 Copynumber: 5.5 Consensus size: 24
93872381 AGGTTCGCAT
*
93872391 ATAA-GGTTCACATACTAAATCAC
1 ATAAGGGTTCACATAATAAATCAC
* *
93872414 ATGAGGGTTCGCATAATAAATCAC
1 ATAAGGGTTCACATAATAAATCAC
* *
93872438 ATAAGGGTGCACATATTAAATC-C
1 ATAAGGGTTCACATAATAAATCAC
* *
93872461 ATAAGGGTTCACATAATAAAACAT
1 ATAAGGGTTCACATAATAAATCAC
** * *
93872485 ATGGGGGTTCACATACTAAATCAT
1 ATAAGGGTTCACATAATAAATCAC
93872509 ATAA-GGTTCACA
1 ATAAGGGTTCACA
93872521 AATTAAAACA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
23 31 0.35
24 57 0.65
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (24 bp):
ATAAGGGTTCACATAATAAATCAC
Found at i:93872493 original size:71 final size:69
Alignment explanation
Indices: 93872391--93872527 Score: 175
Period size: 71 Copynumber: 2.0 Consensus size: 69
93872381 AGGTTCGCAT
* * * *
93872391 ATAAGGTTCACATACTAAATCACATGAGGGTTCGCATAATAAATCACATAAGGGTGCACATATTA
1 ATAAGGTTCACATAATAAAACACATGAGGGTTCACATAATAAATCACATAA-GGTGCACAAATTA
93872456 AATCC
65 AATCC
* * * * *
93872461 ATAAGGGTTCACATAATAAAACATATGGGGGTTCACATACTAAATCATATAAGGTTCACAAATTA
1 ATAA-GGTTCACATAATAAAACACATGAGGGTTCACATAATAAATCACATAAGGTGCACAAATTA
93872526 AA
65 AA
93872528 ACATATAGGG
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
70 17 0.30
71 40 0.70
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.26
Consensus pattern (69 bp):
ATAAGGTTCACATAATAAAACACATGAGGGTTCACATAATAAATCACATAAGGTGCACAAATTAA
ATCC
Found at i:93872527 original size:23 final size:22
Alignment explanation
Indices: 93872388--93872534 Score: 80
Period size: 24 Copynumber: 6.3 Consensus size: 22
93872378 ACAAGGTTCG
*
93872388 CATATAAGGTTCACATACTAAAT
1 CATATAAGGTTCACA-AATAAAT
* * *
93872411 CACATGAGGGTTCGCATAATAAAT
1 CATAT-AAGGTTCACA-AATAAAT
* * *
93872435 CACATAAGGGTGCACATATTAAAT
1 CATATAA-GGTTCACA-AATAAAT
* *
93872459 CCATA-AGGGTTCACATAATAAAA
1 -CATATAAGGTTCACA-AATAAAT
** *
93872482 CATATGGGGGTTCACATACTAAAT
1 CATAT-AAGGTTCACA-AATAAAT
*
93872506 CATATAAGGTTCACAAATTAAAA
1 CATATAAGGTTCACAAA-TAAAT
93872529 CATATA
1 CATATA
93872535 GGGGTTTGCA
Statistics
Matches: 98, Mismatches: 20, Indels: 12
0.75 0.15 0.09
Matches are distributed among these distances:
22 5 0.05
23 36 0.37
24 54 0.55
25 3 0.03
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (22 bp):
CATATAAGGTTCACAAATAAAT
Found at i:93872528 original size:47 final size:47
Alignment explanation
Indices: 93872395--93872540 Score: 170
Period size: 47 Copynumber: 3.1 Consensus size: 47
93872385 TCGCATATAA
* * * * *
93872395 GGTTCACATACTAAATCACATGAGGGTTCGCATAATAAATCACATAAG
1 GGTTCACATACTAAATCATAT-AGGGTTCACATAATAAAACATATAGG
* * *
93872443 GGTGCACATATTAAATCCATA-AGGGTTCACATAATAAAACATATGGG
1 GGTTCACATACTAAAT-CATATAGGGTTCACATAATAAAACATATAGG
*
93872490 GGTTCACATACTAAATCATATAAGGTTCACA-AATTAAAACATATAGG
1 GGTTCACATACTAAATCATATAGGGTTCACATAA-TAAAACATATAGG
93872537 GGTT
1 GGTT
93872541 TGCATACCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
46 6 0.07
47 60 0.72
48 14 0.17
49 3 0.04
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (47 bp):
GGTTCACATACTAAATCATATAGGGTTCACATAATAAAACATATAGG
Found at i:93881511 original size:11 final size:11
Alignment explanation
Indices: 93881477--93881512 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
93881467 GTTTATGATC
*
93881477 ATGATAAGTAT
1 ATGATATGTAT
*
93881488 AAGATATGTAT
1 ATGATATGTAT
93881499 ATGATATGTAT
1 ATGATATGTAT
93881510 ATG
1 ATG
93881513 TTTGGGGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (11 bp):
ATGATATGTAT
Found at i:93887743 original size:21 final size:20
Alignment explanation
Indices: 93887714--93887803 Score: 57
Period size: 20 Copynumber: 4.7 Consensus size: 20
93887704 ATATGTTATG
93887714 TTTT-TATTATATATAATAT
1 TTTTCTATTATATATAATAT
* *
93887733 TTATTCTATTATAT-TCACA-
1 TT-TTCTATTATATATAATAT
* *
93887752 -TTT-TATTATATGTTATAT
1 TTTTCTATTATATATAATAT
*
93887770 TTTTACTA-TATATATATTAT
1 TTTT-CTATTATATATAATAT
*
93887790 TTATTTTATTATAT
1 TT-TTCTATTATAT
93887804 TTCACTTATT
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
16 8 0.15
17 5 0.09
18 1 0.02
19 5 0.09
20 18 0.33
21 17 0.31
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (20 bp):
TTTTCTATTATATATAATAT
Found at i:93887762 original size:55 final size:57
Alignment explanation
Indices: 93887696--93887804 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 57
93887686 ATTTTTATAA
*
93887696 ATTTTACTATATGTTATGTTTTTA-T-TATATATAATATTTATTCTATTATATTCAC
1 ATTTTACTATATGTTATATTTTTACTATATATATAATATTTATTCTATTATATTCAC
* * *
93887751 ATTTTATTATATGTTATATTTTTACTATATATATATTATTTATTTTATTATATT
1 ATTTTACTATATGTTATATTTTTACTATATATATAATATTTATTCTATTATATT
93887805 TCACTTATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 22 0.46
56 1 0.02
57 25 0.52
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (57 bp):
ATTTTACTATATGTTATATTTTTACTATATATATAATATTTATTCTATTATATTCAC
Found at i:93887779 original size:18 final size:18
Alignment explanation
Indices: 93887697--93887805 Score: 75
Period size: 18 Copynumber: 6.1 Consensus size: 18
93887687 TTTTTATAAA
* *
93887697 TTTTACTATATGTTATGT
1 TTTTACTATATATTATAT
* *
93887715 TTTTATTATATATAATAT
1 TTTTACTATATATTATAT
*
93887733 TTATT-CTATTATATTCACA-
1 TT-TTACTA-TATATT-ATAT
* *
93887752 TTTTATTATATGTTATAT
1 TTTTACTATATATTATAT
93887770 TTTTACTATATA-TATAT
1 TTTTACTATATATTATAT
*
93887787 TATTTA-T-TTTATTATAT
1 T-TTTACTATATATTATAT
93887804 TT
1 TT
93887806 CACTTATTCT
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
16 4 0.06
17 15 0.21
18 39 0.55
19 11 0.15
20 2 0.03
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTACTATATATTATAT
Found at i:93887812 original size:19 final size:18
Alignment explanation
Indices: 93887790--93887839 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
93887780 TATATATTAT
93887790 TTATTTTATTATATTTCA
1 TTATTTTATTATATTTCA
* *
93887808 CTTATTCTATTAT-TTTTA
1 -TTATTTTATTATATTTCA
93887826 TTATTTT-TTATATT
1 TTATTTTATTATATT
93887840 ATTTATCACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 4 0.15
17 8 0.30
18 4 0.15
19 11 0.41
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTTTATTATATTTCA
Found at i:93900153 original size:44 final size:44
Alignment explanation
Indices: 93900105--93900928 Score: 468
Period size: 44 Copynumber: 18.6 Consensus size: 44
93900095 GTTTACAAGG
* * * *
93900105 AGCAGGTCAAAGATAGCAGGTTTGGCGTCTCTGTATTGTCAGGA
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* *
93900149 AGCAGATCAAAGATAGCAGATTTAGAGTCTCTATATTGTCAGAA
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * * *
93900193 AGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTCGACAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATT-GTCAGAA
* * ** * * * * *
93900238 AGCAGATCGAAGACATAGCAGATCTAACCT-TCGGATGTTTTTGCATCAA
1 AGCAGATC-AA-AGATAGCAGATTTGGCGTCTC-TAT-ATTGT-CA-GAA
* * * * *
93900287 AGTAGATCCAAGAT----GATTTGGCATC-CT-TGCGTT-TACA-AGG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTAT--ATTGT-CAGA-A
** * * * **
93900327 AGCAGATTGAAGATAGCAGGTTTGGCGTCTCTGTATTGTTAGGG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * *
93900371 AGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTGTCAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * * *
93900415 AGTAGATCAAAGATAGCAGATTTGGCATCTCTATATTCGACAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATT-GTCAGAA
* ** * * * *
93900460 AGCAGATCAAAGACATAGTAG-TTCTAACCT-TCGGATGTTTTTGCATCG-A
1 AGCAGATCAAAG--ATAGCAGATT-TGGCGTCTC-TAT-ATTGT-CA--GAA
* * * * * *
93900509 AGTAGATCCAAGAT----GATTTAGCATC-CT-TGCGTT-TACA-AGG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTAT--ATTGT-CAGA-A
* * * * * *
93900549 AGCAGATCGAAGATAGTAGGTTTGGCGTCTTTGTATTGTCAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* *
93900593 AGCAGATCAAAGATAGCAGATTTGGTGTCTCTATATTGTCAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * * * * * *
93900637 TGTAGATCGACGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * * *
93900681 AGCATATCAAAGATAACAGATTTGGTGTCTCTGTATTGTCAGAGA
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGA-A
* *
93900726 A-CAGATCAAAGATAGCATATTTGGCGTCTCTATATTGTCAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * * * * *
93900769 GGCAGATCGAAGGTAGTAGATTTGGCGTCTCTGTATTGTCAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * * *
93900813 AGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTGTTAGAG
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * *
93900857 AGCAGATCGAAGGTAGCAGATTTGGCGTCTCTGTATTGTCA-AA
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
* * *
93900900 GAGCAGATCGAAGATAACAGATCTGGCGT
1 -AGCAGATCAAAGATAGCAGATTTGGCGT
93900929 TCCTGAGTTT
Statistics
Matches: 608, Mismatches: 129, Indels: 86
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.00
40 23 0.04
41 8 0.01
42 4 0.01
43 14 0.02
44 453 0.75
45 37 0.06
46 9 0.01
47 31 0.05
48 9 0.01
49 18 0.03
50 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
AGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAA
Found at i:93900217 original size:88 final size:88
Alignment explanation
Indices: 93900104--93900928 Score: 564
Period size: 88 Copynumber: 9.3 Consensus size: 88
93900094 CGTTTACAAG
* *
93900104 GAGCAGGTCAAAGATAGCAGGTTTGGCGTCTCTGTATTGTCAG-GAAGCAGATCAAAGATAGCAG
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG-AGCAGATCAAAGATAGCAG
*
93900168 ATTTAGAGTCTCTATATTGTCAGA
65 ATTTGGAGTCTCTATATTGTCAGA
* * * * * *
93900192 AAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTCGACAGAGAGCAGATCGAAGACATAGC
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATC-AA-AGATAGC
* ** * * * *
93900257 AGATCT--AACCTTCGGATGTTTTTGCATCA
63 AGATTTGGAGTC-TC-TAT-ATTGT-CA-GA
* * * * ** **
93900286 AAGTAGATCCAAGAT----GATTTGGCATC-CTTGCGTT-TACA-AGGAGCAGATTGAAGATAGC
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTC-TGTATTGT-CAGA-GAGCAGATCAAAGATAGC
* * * * *
93900344 AGGTTTGGCGTCTCTGTATTGTTAGG
63 AGATTTGGAGTCTCTATATTGTCAGA
* *
93900370 GAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCAAAGATAGCAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
*
93900435 TTTGGCA-TCTCTATATTCGACAGA
66 TTTGG-AGTCTCTATATT-GTCAGA
* ** * * * *
93900459 GAGCAGATCAAAGACATAGTAG-TTCTAACCT-TCGGATGT-TTTTGCATCGA-AGTAGATCCAA
1 GAGCAGATCAAAG--ATAGCAGATT-TGGCGTCTC---TGTATTGT-CA--GAGAGCAGATCAAA
* *
93900520 GAT----GATTTAGCA-TC-CT-TGCGTT-TACA-A
57 GATAGCAGATTT-GGAGTCTCTAT--ATTGT-CAGA
* * * *
93900547 GGAGCAGATCGAAGATAGTAGGTTTGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
1 -GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
93900612 ATTTGGTGTCTCTATATTGTCAGA
65 ATTTGGAGTCTCTATATTGTCAGA
* * * * * * *
93900636 GTGTAGATCGACGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCATATCAAAGATAACAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
* *
93900701 TTTGGTGTCTCTGTATTGTCAGA
66 TTTGGAGTCTCTATATTGTCAGA
* * * * * * *
93900724 GAACAGATCAAAGATAGCATATTTGGCGTCTCTATATTGTCAGAGGGCAGATCGAAGGTAGTAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
* *
93900789 TTTGGCGTCTCTGTATTGTCAGA
66 TTTGGAGTCTCTATATTGTCAGA
* * * *
93900812 GAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCGAAGGTAGCAGA
1 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
* * *
93900877 TTTGGCGTCTCTGTATTGTCAAA
66 TTTGGAGTCTCTATATTGTCAGA
* * *
93900900 GAGCAGATCGAAGATAACAGATCTGGCGT
1 GAGCAGATCAAAGATAGCAGATTTGGCGT
93900929 TCCTGAGTTT
Statistics
Matches: 578, Mismatches: 109, Indels: 100
0.73 0.14 0.13
Matches are distributed among these distances:
83 2 0.00
84 24 0.04
85 6 0.01
86 6 0.01
87 22 0.04
88 355 0.61
89 65 0.11
90 34 0.06
91 22 0.04
92 6 0.01
93 7 0.01
94 27 0.05
95 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (88 bp):
GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
TTTGGAGTCTCTATATTGTCAGA
Found at i:93900292 original size:222 final size:222
Alignment explanation
Indices: 93899988--93900913 Score: 1135
Period size: 222 Copynumber: 4.2 Consensus size: 222
93899978 CGAAAAAAAT
* * *
93899988 AGATTTGGCATCTCTATATTTGACAGAGAGCAGATCGAAGACATATCAGATCTAACCTTCGGATG
1 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATG
* * *
93900053 TTTTTTCATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGGTCAAAGA
66 TTTTTGCATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGA
*
93900118 TAGCAGGTTTGGCGTCTCTGTATTGTCAGGAAGCAGATCAAAGATAGCAGATTTAGAGTCTCTAT
131 TAGCAGGTTTGGCGTCTCTGTATTGTCAGGAAGCAGATCAAAGATAGCAGATTTGGAGTCTCTAT
* *
93900183 ATTGTCAGAAAGCAGATCGAAGATAGC
196 ATTGTCAGAGAGTAGATCGAAGATAGC
*
93900210 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATG
1 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATG
* *
93900275 TTTTTGCATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATTGAAGA
66 TTTTTGCATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGA
* * * * *
93900340 TAGCAGGTTTGGCGTCTCTGTATTGTTAGGGAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGT
131 TAGCAGGTTTGGCGTCTCTGTATTGTCAGGAAGCAGATCAAAGATAGCAGATTTGGAGTCTCTAT
*
93900405 ATTGTCAGAGAGTAGATCAAAGATAGC
196 ATTGTCAGAGAGTAGATCGAAGATAGC
* *
93900432 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGTAGTTCTAACCTTCGGATG
1 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATG
*
93900497 TTTTTGCATCGAAGTAGATCCAAGATGATTTAGCATCCTTGCGTTTACAAGGAGCAGATCGAAGA
66 TTTTTGCATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGA
* * *
93900562 TAGTAGGTTTGGCGTCTTTGTATTGTCA-GAGAGCAGATCAAAGATAGCAGATTTGGTGTCTCTA
131 TAGCAGGTTTGGCGTCTCTGTATTGTCAGGA-AGCAGATCAAAGATAGCAGATTTGGAGTCTCTA
* *
93900626 TATTGTCAGAGTGTAGATCGACGATAGC
195 TATTGTCAGAGAGTAGATCGAAGATAGC
* * * * *** **
93900654 AGATTTGGCATCTCTGTATT-GTCAGAGAGCATATCAAAG--ATAACAGAT-T-TGGTGTC-TCT
1 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGCAGATCTAACCT-TCGGAT
* ** * * * *
93900713 G-TATTGTCAGAGAA-CAGATCAAAGATAGCATATTTGGCGTCTCTAT--ATTGT-CAGAGG-GC
65 GTTTTTG-CATCGAAGTAGATCCAAGAT-G---ATTTGGCATC-CT-TGCGTT-TACA-AGGAGC
* * * *
93900772 AGATCGAAGGTAGTAGATTTGGCGTCTCTGTATTGTCA-GAGAGCAGATCAAAGATAGCAAATTT
121 AGATCGAAGATAGCAGGTTTGGCGTCTCTGTATTGTCAGGA-AGCAGATCAAAGATAGCAGATTT
* * * * *
93900836 GGCGTCTCTGTATTGTTAGAGAGCAGATCGAAGGTAGC
185 GGAGTCTCTATATTGTCAGAGAGTAGATCGAAGATAGC
* * * * *
93900874 AGATTTGGCGTCTCTGTATT-GTCAAAGAGCAGATCGAAGA
1 AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGA
93900914 TAACAGATCT
Statistics
Matches: 626, Mismatches: 66, Indels: 25
0.87 0.09 0.03
Matches are distributed among these distances:
216 14 0.02
217 9 0.01
218 3 0.00
219 6 0.01
220 140 0.22
221 24 0.04
222 430 0.69
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (222 bp):
AGATTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATG
TTTTTGCATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGA
TAGCAGGTTTGGCGTCTCTGTATTGTCAGGAAGCAGATCAAAGATAGCAGATTTGGAGTCTCTAT
ATTGTCAGAGAGTAGATCGAAGATAGC
Found at i:93900927 original size:132 final size:132
Alignment explanation
Indices: 93900104--93900928 Score: 648
Period size: 132 Copynumber: 6.2 Consensus size: 132
93900094 CGTTTACAAG
* * *
93900104 GAGCAGGTCAAAGATAGCAGGTTTGGCGTCTCTGTATTGTCAG-GAAGCAGATCAAAGATAGCAG
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG-AGCAGATCAAAGATAGCAG
* * * * * * *
93900168 ATTTAGAGTCTCTATATTGTCAGAAAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTCGA
65 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATT-GT
93900233 CAGA
129 CAGA
* ** * * * *
93900237 GAGCAGATCGAAGACATAGCAGATCTAACCT-TCGGATGTTTTTGCATCA-A-AGTAGATCCAAG
1 GAGCAGATCGAAG--ATAGCAGATTTGGCGTCTC---TG-TATTG--TCAGAGAGCAGATCAAAG
* ** ** *
93900299 AT----GATTTGGCATC-CTTGCGTT-TACA-AGGAGCAGATTGAAGATAGCAGGTTTGGCGTCT
58 ATAGCAGATTTGGCGTCTC-TGTATTGT-CAGA-GAGCAGATCAAAGATAGCAGATTTGGCGTCT
* * *
93900357 CTGTATTGTTAGG
120 CTATATTGTCAGA
* * *
93900370 GAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCAAAGATAGCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
* * * * ** * * *
93900435 TTTGGCATCTCTATATTCGACAGAGAGCAGATCAAAGACATAGTAG-TTCTAACCT-TCGGATGT
66 TTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCAAAG--ATAGCAGATT-TGGCGTCTC-TAT-A
*
93900498 TTTTGCATCGA
125 TTGT-CA--GA
* * * * ** * *
93900509 -AGTAGATCCAAGAT----GATTTAGCATC-CTTGCGTT-TACA-AGGAGCAGATCGAAGATAGT
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTC-TGTATTGT-CAGA-GAGCAGATCAAAGATAGC
* * *
93900566 AGGTTTGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGTGTCTCTATATTG
63 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTG
93900631 TCAGA
128 TCAGA
* * * * * *
93900636 GTGTAGATCGACGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCATATCAAAGATAACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
* * *
93900701 TTTGGTGTCTCTGTATTGTCAGAGAACAGATCAAAGATAGCATATTTGGCGTCTCTATATTGTCA
66 TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCA
93900766 GA
131 GA
* * * *
93900768 GGGCAGATCGAAGGTAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
* * * *
93900833 TTTGGCGTCTCTGTATTGTTAGAGAGCAGATCGAAGGTAGCAGATTTGGCGTCTCTGTATTGTCA
66 TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCA
*
93900898 AA
131 GA
* *
93900900 GAGCAGATCGAAGATAACAGATCTGGCGT
1 GAGCAGATCGAAGATAGCAGATTTGGCGT
93900929 TCCTGAGTTT
Statistics
Matches: 539, Mismatches: 109, Indels: 89
0.73 0.15 0.12
Matches are distributed among these distances:
126 3 0.01
127 3 0.01
128 28 0.05
129 4 0.01
130 3 0.01
131 21 0.04
132 253 0.47
133 67 0.12
134 98 0.18
135 21 0.04
136 3 0.01
137 3 0.01
138 28 0.05
139 1 0.00
140 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (132 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGA
TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATATTGTCA
GA
Found at i:93904601 original size:137 final size:136
Alignment explanation
Indices: 93904355--93904640 Score: 500
Period size: 137 Copynumber: 2.1 Consensus size: 136
93904345 CTATTGGCCT
** * *
93904355 AAGCCCATTCAGGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATCACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATCACAATAAACTGGGCCTT
* *
93904420 AGCCCCTTATTCAGATAACAGTATGGCCTATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
93904485 CATATGC
130 CATATGC
*
93904492 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATCACAATAAACTGGGCCTT
93904557 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
93904622 ATATGC
131 ATATGC
93904628 AAGCCCATTTGGG
1 AAGCCCATTTGGG
93904641 GAGACTACTC
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 22 0.15
137 120 0.85
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATCACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:93906456 original size:26 final size:26
Alignment explanation
Indices: 93906420--93906555 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
93906410 CATGATATTC
*
93906420 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
93906446 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
93906472 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
93906498 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
93906524 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
93906550 TTATCA
1 TTATCA
93906556 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:93910057 original size:16 final size:16
Alignment explanation
Indices: 93910038--93910080 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
93910028 ATTGGAAAAG
93910038 TGAATT-ATTTATTGAA
1 TGAATTGATTT-TTGAA
93910054 TGAATTGATTTTTGAA
1 TGAATTGATTTTTGAA
*
93910070 TTGAAATGATT
1 -TGAATTGATT
93910081 GTATGTGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (16 bp):
TGAATTGATTTTTGAA
Found at i:93913347 original size:45 final size:45
Alignment explanation
Indices: 93913297--93913388 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
93913287 ATGGACAACT
93913297 AAAAGTGGGAATAGAGTAATAAATAAGAGAACAATGAGAGTTTTC
1 AAAAGTGGGAATAGAGTAATAAATAAGAGAACAATGAGAGTTTTC
93913342 AAAAGTGGGAATAGAGTAATAAATAAGAGAACAATGAGAGTTTTC
1 AAAAGTGGGAATAGAGTAATAAATAAGAGAACAATGAGAGTTTTC
93913387 AA
1 AA
93913389 GATAACTCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.50, C:0.04, G:0.24, T:0.22
Consensus pattern (45 bp):
AAAAGTGGGAATAGAGTAATAAATAAGAGAACAATGAGAGTTTTC
Found at i:93914516 original size:26 final size:26
Alignment explanation
Indices: 93914483--93914592 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
93914473 TGATACAAAT
93914483 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
93914509 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93914535 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93914561 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93914587 TGATAA
1 TGATAA
93914593 GAATTACATG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93920558 original size:25 final size:25
Alignment explanation
Indices: 93920517--93920568 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
93920507 ATCAATAAGC
*
93920517 ATGTGGGGTTGTATATATATTATAT
1 ATGTGGGGTTGTATATATAATATAT
*
93920542 ATGT-GGGTTTTATTATATAATATAT
1 ATGTGGGGTTGTA-TATATAATATAT
93920567 AT
1 AT
93920569 AAGTTTATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (25 bp):
ATGTGGGGTTGTATATATAATATAT
Found at i:93920564 original size:23 final size:25
Alignment explanation
Indices: 93920517--93920566 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
93920507 ATCAATAAGC
*
93920517 ATGTGGGGTTGTATATATATTATAT
1 ATGTGGGGTTGTATATATATAATAT
*
93920542 ATGT-GGGTTTTAT-TATATAATAT
1 ATGTGGGGTTGTATATATATAATAT
93920565 AT
1 AT
93920567 ATAAGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 8 0.35
25 4 0.17
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (25 bp):
ATGTGGGGTTGTATATATATAATAT
Found at i:93923614 original size:40 final size:39
Alignment explanation
Indices: 93923569--93923776 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
93923559 CGGAATACAA
*
93923569 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
93923609 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
93923649 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
93923689 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
93923729 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
93923769 CCGGATAT
1 CCGGATAT
93923777 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:93923709 original size:80 final size:81
Alignment explanation
Indices: 93923569--93923774 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
93923559 CGGAATACAA
* * *
93923569 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
93923633 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
93923649 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
93923712 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
93923729 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
93923775 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:93932062 original size:26 final size:24
Alignment explanation
Indices: 93932018--93932067 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
93932008 ATTTGTTTTA
*
93932018 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
93932042 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
93932068 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:93933051 original size:85 final size:81
Alignment explanation
Indices: 93932892--93933052 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
93932882 TATCTTTTAA
* * ** * *
93932892 TTTCCTCCAAGTTGGCATAAATAAATAAAAAATGAACTTTCAAAATGAGGGATACTTAACTTCCC
1 TTTCCTCCAAATTGGCATAAATAAATAAAAAATAAACTTTCAAAAACAGGGATAATCAACTTCCC
93932957 TTACTTTCCCTTATCT
66 TTACTTTCCCTTATCT
* *
93932973 TTTCCTCCAAATTGGGATAAATAAATAAAAATTAAACTTTCAAGGGAAAACAGGGATAATCAACT
1 TTTCCTCCAAATTGGCATAAATAAATAAAAAATAAACTTTC-A---AAAACAGGGATAATCAACT
*
93933038 TCCGTTACTTTCCCT
62 TCCCTTACTTTCCCT
93933053 AGCTTAATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 37 0.55
82 1 0.01
85 29 0.43
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (81 bp):
TTTCCTCCAAATTGGCATAAATAAATAAAAAATAAACTTTCAAAAACAGGGATAATCAACTTCCC
TTACTTTCCCTTATCT
Found at i:93936851 original size:51 final size:49
Alignment explanation
Indices: 93936795--93936915 Score: 154
Period size: 49 Copynumber: 2.4 Consensus size: 49
93936785 GACCTAACCA
*
93936795 ACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGCATAGTAGCCTGC
1 ACTTAGTACTACACACGTGA-C-AAGTTATTC-GGTACACATAGTAGCCTGC
* * * * *
93936846 ACTTAGTACTACACATGCGACCATTTATTCGGTACACGTAGTAGCCTGC
1 ACTTAGTACTACACACGTGACAAGTTATTCGGTACACATAGTAGCCTGC
93936895 ACTTAGTACTACACACGTGAC
1 ACTTAGTACTACACACGTGAC
93936916 CTCACAATAG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 40 0.66
50 3 0.05
51 18 0.30
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
ACTTAGTACTACACACGTGACAAGTTATTCGGTACACATAGTAGCCTGC
Found at i:93943654 original size:42 final size:43
Alignment explanation
Indices: 93943550--93943666 Score: 148
Period size: 42 Copynumber: 2.7 Consensus size: 43
93943540 ATTCAGAAAC
* * *
93943550 GATACAATGCCAACGTCCCGGACATGGTCTTACATGTAATTCA
1 GATACAATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA
* ** *
93943593 -ATATCGATGCCTCTGTCCCAGACAGGGTCTTACATG-AAATCA
1 GATA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA
93943635 GATACAATGCCAATGTCCCAGACATGGTCTTA
1 GATACAATGCCAATGTCCCAGACATGGTCTTA
93943667 TAAATAAATC
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 32 0.52
43 29 0.48
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
GATACAATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA
Found at i:93943695 original size:85 final size:85
Alignment explanation
Indices: 93943550--93943709 Score: 209
Period size: 85 Copynumber: 1.9 Consensus size: 85
93943540 ATTCAGAAAC
* ** *
93943550 GATACAATGCCAACGTCCCGGACATGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGA
1 GATACAATGCCAACGTCCCAGACATGGTCTTACAAATAATTCAATATCGAGGCCTCTGTCCCAGA
93943615 CAG-GGTCTTACATGAAATCA
66 -AGCGGTCTTACATGAAATCA
* * *
93943635 GATACAATGCCAATGTCCCAGACATGGTCTTATAAATAAATCTC-A-ATCGAGGCCTGTGTCCCA
1 GATACAATGCCAACGTCCCAGACATGGTCTTACAAAT-AAT-TCAATATCGAGGCCTCTGTCCCA
93943698 GAAGCGGTCTTA
64 GAAGCGGTCTTA
93943710 TGCGATGTCT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 2 0.03
85 57 0.88
86 4 0.06
87 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (85 bp):
GATACAATGCCAACGTCCCAGACATGGTCTTACAAATAATTCAATATCGAGGCCTCTGTCCCAGA
AGCGGTCTTACATGAAATCA
Found at i:93947123 original size:46 final size:46
Alignment explanation
Indices: 93947073--93947245 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
93947063 TGGTTGAGCA
*
93947073 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
93947119 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
93947166 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
93947212 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93947246 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.58
47 28 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:93947229 original size:93 final size:93
Alignment explanation
Indices: 93947070--93947240 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
93947060 GGATGGTTGA
* *
93947070 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
93947135 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
93947163 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
93947228 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93947241 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:93948018 original size:38 final size:38
Alignment explanation
Indices: 93947967--93948041 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
93947957 CTAAATGATG
*
93947967 AGTAAGTTATGAAATTTAAGATTAATAAGTCTATTTTT
1 AGTAAGTTATGAAATTGAAGATTAATAAGTCTATTTTT
*
93948005 AGTAAGTTATGAAATTGAAGATTAATGAGTCTATTTT
1 AGTAAGTTATGAAATTGAAGATTAATAAGTCTATTTT
93948042 CATGTGGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.43
Consensus pattern (38 bp):
AGTAAGTTATGAAATTGAAGATTAATAAGTCTATTTTT
Found at i:93948677 original size:18 final size:18
Alignment explanation
Indices: 93948656--93948723 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
93948646 AGTTTGACAA
93948656 ATTAATATAGTTCATCAT
1 ATTAATATAGTTCATCAT
* *
93948674 ATTAATATAGATCACTAAT
1 ATTAATATAGTTCA-TCAT
* **
93948693 -TTAACATAGTTCGCCAT
1 ATTAATATAGTTCATCAT
* *
93948710 AATAATATAATTCA
1 ATTAATATAGTTCA
93948724 CCAAGTTAAC
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
17 2 0.05
18 32 0.86
19 3 0.08
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTAATATAGTTCATCAT
Found at i:93948716 original size:36 final size:36
Alignment explanation
Indices: 93948657--93948742 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 36
93948647 GTTTGACAAA
* * * * *
93948657 TTAATATAGTTCATCATATTAATATAGA-TCACTAAT
1 TTAACATAGTTCACCATAATAATATA-ATTCACCAAG
*
93948693 TTAACATAGTTCGCCATAATAATATAATTCACCAAG
1 TTAACATAGTTCACCATAATAATATAATTCACCAAG
*
93948729 TTAACATGGTTCAC
1 TTAACATAGTTCAC
93948743 AATATAACAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 1 0.02
36 40 0.98
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (36 bp):
TTAACATAGTTCACCATAATAATATAATTCACCAAG
Found at i:93948752 original size:17 final size:18
Alignment explanation
Indices: 93948730--93948767 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
93948720 TTCACCAAGT
* *
93948730 TAACATGGTTCAC-AATA
1 TAACATAGTACACAAATA
93948747 TAACATAGTACACAAATA
1 TAACATAGTACACAAATA
93948765 TAA
1 TAA
93948768 TTGGCTCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (18 bp):
TAACATAGTACACAAATA
Found at i:93957566 original size:44 final size:44
Alignment explanation
Indices: 93957507--93957597 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
93957497 CGACACAAAT
*
93957507 TAATATCACTTAGCTCAATTTTAAAAATAAATCAGTTTAGTTAA
1 TAATATCACTTAGCTCAATTTTAAAAATAAATCAATTTAGTTAA
93957551 TAATATCACTTAGCTCAATTTTAAAAATAAATCAATTTAGTTAA
1 TAATATCACTTAGCTCAATTTTAAAAATAAATCAATTTAGTTAA
93957595 TAA
1 TAA
93957598 ATAAGATTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.38
Consensus pattern (44 bp):
TAATATCACTTAGCTCAATTTTAAAAATAAATCAATTTAGTTAA
Found at i:93962643 original size:50 final size:46
Alignment explanation
Indices: 93962523--93962797 Score: 172
Period size: 46 Copynumber: 5.9 Consensus size: 46
93962513 ATGGGGTAGA
*
93962523 ATGCCGATGCCATGTCCAGACATGGTCTTACACTGGCTCATATCTC
1 ATGCCGATGCCATGTCCAGACATGATCTTACACTGGCTCATATCTC
* * * *
93962569 AAGTCGATGCCATGTTCCATACATGATCTTACACTAGCTCTCACATATC-C
1 ATGCCGATGCCATG-TCCAGACATGATCTTACACT-G-GCT--CATATCTC
* * * * * * *
93962619 GTGCCGATGCCATGTCCCAGACATGGTATTATACT-G-ACACATCTT
1 ATGCCGATGCCATGT-CCAGACATGATCTTACACTGGCTCATATCTC
* * **
93962664 A-GCCGATG-CATGTCCTAGACATG-TCTTATACTGGCTTACGTCTC
1 ATGCCGATGCCATGTCC-AGACATGATCTTACACTGGCTCATATCTC
* * *
93962708 GAGGCTGATG-CATGTCCCAGACATG-TCTTACACTAGCTC-TCATCTC
1 -ATGCCGATGCCATGT-CCAGACATGATCTTACACTGGCTCAT-ATCTC
* * * *
93962754 AATACCAATGACATGTCCCAGACATGGTCTTACACTGGCTCATA
1 -ATGCCGATGCCATGT-CCAGACATGATCTTACACTGGCTCATA
93962798 ATAACCCATA
Statistics
Matches: 178, Mismatches: 34, Indels: 32
0.73 0.14 0.13
Matches are distributed among these distances:
42 10 0.06
43 13 0.07
44 17 0.10
45 1 0.01
46 50 0.28
47 35 0.20
48 15 0.08
49 4 0.02
50 27 0.15
51 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCCGATGCCATGTCCAGACATGATCTTACACTGGCTCATATCTC
Found at i:93966641 original size:13 final size:13
Alignment explanation
Indices: 93966623--93966650 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93966613 ACATATTATA
93966623 AATATTTTGTGTT
1 AATATTTTGTGTT
93966636 AATATTTTGTGTT
1 AATATTTTGTGTT
93966649 AA
1 AA
93966651 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:93973182 original size:13 final size:13
Alignment explanation
Indices: 93973164--93973191 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93973154 ACATATTATA
93973164 AATATTTTGTGTT
1 AATATTTTGTGTT
93973177 AATATTTTGTGTT
1 AATATTTTGTGTT
93973190 AA
1 AA
93973192 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:93979262 original size:40 final size:40
Alignment explanation
Indices: 93979195--93979319 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
93979185 GGACTAAGAT
** * *
93979195 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* *
93979235 CCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* *
93979275 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
93979314 CCGAAG
1 CCGAAG
93979320 ATACTTGGGT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 15 0.21
40 56 0.77
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
Found at i:93979584 original size:22 final size:22
Alignment explanation
Indices: 93979544--93979585 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
93979534 GAATGTGCAT
*
93979544 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
93979566 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
93979586 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:93981055 original size:23 final size:24
Alignment explanation
Indices: 93981011--93981056 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
93981001 TGAGAATGTG
*
93981011 CATATATGAAGTTATTCATTTAGC
1 CATATATGAAGTTATACATTTAGC
93981035 CATA-ATGAATGTTATAC-TTTAG
1 CATATATGAA-GTTATACATTTAG
93981057 TCAAAACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (24 bp):
CATATATGAAGTTATACATTTAGC
Found at i:93988980 original size:22 final size:22
Alignment explanation
Indices: 93988940--93988981 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
93988930 GAATGTGCAT
*
93988940 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
93988962 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
93988982 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:93993636 original size:40 final size:40
Alignment explanation
Indices: 93993574--93993686 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
93993564 TCAATATCTC
* * *
93993574 GCACACTAAGTGTCGTACATAGCTGAAGCTATCTCAA-ATT
1 GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAATA-T
* * ** *
93993614 GTACACTAAGTGCCATGTATAGCCAAAGCTATCTCGATCAT
1 GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAT-AT
* *
93993655 GCACATTAAGTGCCATATATAGGTGAAGCTAT
1 GCACACTAAGTGCCATATATAGCTGAAGCTAT
93993687 TTCGATCTCA
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
40 29 0.51
41 27 0.47
42 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAATAT
Found at i:93998974 original size:12 final size:12
Alignment explanation
Indices: 93998957--93998982 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
93998947 ATGTAAGTGA
93998957 TCTTGATGATTT
1 TCTTGATGATTT
93998969 TCTTGATGATTT
1 TCTTGATGATTT
93998981 TC
1 TC
93998983 ACATTTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:93999895 original size:50 final size:47
Alignment explanation
Indices: 93999702--94000022 Score: 185
Period size: 50 Copynumber: 6.7 Consensus size: 47
93999692 TTTGTGTGCC
* * * * *
93999702 AGTGTAAGACCATGTCTGGGACATGGCACCAGA-ATTGAGACGAGTGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATC-GACA-TGATACGAGAGCT
* * * * * * *
93999750 AGTGTAAG-TCATGTCCGGGACAT-GTATCGGCCTCGAGACGTA-AGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACAT-GATACG-AGAGCT
* * * * *
93999796 AGTGTAAGA-CATGTCTAAGACAT-GCATCGGCTACGAGAC-A-TG-T
1 AGTGTAAGACCATGTCTGAGACATGGCATCGAC-ATGATACGAGAGCT
* *
93999839 CAGTGTAAGACCATATCTGGGACATGGCATCGACATAGATACGCAAGAGCT
1 -AGTGTAAGACCATGTCTGAGACATGGCATCGACAT-GATACG--AGAGCT
* *
93999890 AGTGTAAGACCATGTCT-AGGACATGGAATCAACATGTAAGTACGAGAGCT
1 AGTGTAAGACCATGTCTGA-GACATGGCATCGACATG--A-TACGAGAGCT
* * * * * *
93999940 AGTGTAAGACCATGTCTGAGACATGCCATCGGCCTCGATGAGGATAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACAT-GAT-ACGAGAGCT
*
93999989 AGTGTAAGATCATGTCTGAGACATGGCATCGACA
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACA
94000023 ACTTAACCCA
Statistics
Matches: 214, Mismatches: 38, Indels: 41
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 14 0.07
46 53 0.25
47 14 0.07
48 9 0.04
49 39 0.18
50 65 0.30
51 4 0.02
52 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCGACATGATACGAGAGCT
Found at i:94026101 original size:15 final size:17
Alignment explanation
Indices: 94026071--94026103 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
94026061 GAAAACATCT
94026071 CAAAAGCATAAAGATAA
1 CAAAAGCATAAAGATAA
94026088 CAAAA-CAT-AAGATAA
1 CAAAAGCATAAAGATAA
94026103 C
1 C
94026104 CCAAAACTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.64, C:0.15, G:0.09, T:0.12
Consensus pattern (17 bp):
CAAAAGCATAAAGATAA
Found at i:94027137 original size:12 final size:12
Alignment explanation
Indices: 94027120--94027144 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94027110 ATGTAAGTGA
94027120 TCTTGATGATTT
1 TCTTGATGATTT
94027132 TCTTGATGATTT
1 TCTTGATGATTT
94027144 T
1 T
94027145 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:94027926 original size:50 final size:48
Alignment explanation
Indices: 94027867--94028047 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 48
94027857 TGTGTACCAA
94027867 TGTAAGACCATGTCTAGGACATGGCATCGACATGGATACGCAAGAGCTAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACATGGATACG--AGAGCTAG
* * *
94027917 TGTAAGACCATGTCTAGGACATGGCAT-TAGCACGTAAGTACGAGAGCTAG
1 TGTAAGACCATGTCTAGGACATGGCATCGA-CATG-GA-TACGAGAGCTAG
* * * * * * * *
94027967 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGAGGATAGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACATGGAT-ACGAGAGCTAG
*
94028016 TGTAAGACCATGTCTGGGACATGGCATCGACA
1 TGTAAGACCATGTCTAGGACATGGCATCGACA
94028048 ATTTAACCCA
Statistics
Matches: 109, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 39 0.36
50 64 0.59
51 1 0.01
52 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACATGGATACGAGAGCTAG
Found at i:94030930 original size:20 final size:20
Alignment explanation
Indices: 94030905--94030955 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
94030895 GGTTATGTCA
94030905 GTGGAAATGTGGGTGTTTCT
1 GTGGAAATGTGGGTGTTTCT
94030925 GTGGAAATGTGGGTGTTTCT
1 GTGGAAATGTGGGTGTTTCT
*
94030945 GTGGTAATGTG
1 GTGGAAATGTG
94030956 CTATGGTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.16, C:0.04, G:0.41, T:0.39
Consensus pattern (20 bp):
GTGGAAATGTGGGTGTTTCT
Found at i:94033012 original size:119 final size:120
Alignment explanation
Indices: 94032830--94033053 Score: 321
Period size: 119 Copynumber: 1.9 Consensus size: 120
94032820 TACTCGTTCA
*
94032830 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
94032895 TTAGTGAC-TCGCACAAATGCCTTCGGGACTTAACCCGGACTTAGTAACTCGCACC
66 ATAGTCACTTAGCACAAA-GCCTTCGGGACTTAACCCGGACTTAGTAACTCGCACC
* **
94032950 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
94033012 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAC
64 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGAC
94033054 ATCATTCGAA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
118 4 0.04
119 69 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGACTTAGTAACTCGCACC
Found at i:94033052 original size:40 final size:40
Alignment explanation
Indices: 94032809--94033052 Score: 293
Period size: 40 Copynumber: 6.1 Consensus size: 40
94032799 CAGAATTTAA
** *
94032809 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94032849 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
94032889 CCGGATTTAGTGACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
94032929 CCGGACT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
94032968 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
94033008 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94033048 CCGGA
1 CCGGA
94033053 CATCATTCGA
Statistics
Matches: 179, Mismatches: 16, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 131 0.73
41 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94036054 original size:24 final size:24
Alignment explanation
Indices: 94036021--94036066 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
94036011 GGGGTAGTAT
*
94036021 AACTGTATTTGTGTCTATATTTAC
1 AACTGAATTTGTGTCTATATTTAC
* *
94036045 AACTGAATTTGTTTCTGTATTT
1 AACTGAATTTGTGTCTATATTT
94036067 GATCTACTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.52
Consensus pattern (24 bp):
AACTGAATTTGTGTCTATATTTAC
Found at i:94037324 original size:2 final size:2
Alignment explanation
Indices: 94037317--94037348 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
94037307 AAAGTGCCAA
94037317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94037349 TACTTGTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94040055 original size:29 final size:29
Alignment explanation
Indices: 94039994--94040055 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
94039984 AATTAGCCTA
* * * *
94039994 GACCCTGTGTCTCACATGATCTAGCGCAT
1 GACCATGTGTCTCACACGATCTAGCACAC
94040023 GACCATGTGTCTCACACGATCTAGCACAC
1 GACCATGTGTCTCACACGATCTAGCACAC
94040052 GACC
1 GACC
94040056 GTGTAGGATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (29 bp):
GACCATGTGTCTCACACGATCTAGCACAC
Found at i:94043748 original size:2 final size:2
Alignment explanation
Indices: 94043741--94043779 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
94043731 TAATGGGATG
94043741 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94043780 AATGAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:94043934 original size:29 final size:29
Alignment explanation
Indices: 94043901--94044061 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
94043891 GTGACGAGAT
94043901 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
94043930 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
94043959 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
94043988 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
94044017 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
94044046 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
94044062 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:94044100 original size:2 final size:2
Alignment explanation
Indices: 94044095--94044127 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
94044085 GTGCGTACTC
*
94044095 TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94044128 CTCCGATCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:94049104 original size:40 final size:40
Alignment explanation
Indices: 94048954--94049121 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
94048944 CGGAATACAA
* * *
94048954 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
94048994 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94049034 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
94049074 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
94049114 CCGGATAT
1 CCGGATAT
94049122 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94050376 original size:19 final size:19
Alignment explanation
Indices: 94050352--94050388 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94050342 GGATGAACAC
94050352 TTTTCTTCCTTTCTTTTTT
1 TTTTCTTCCTTTCTTTTTT
* *
94050371 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTTT
94050389 GTTTCTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (19 bp):
TTTTCTTCCTTTCTTTTTT
Found at i:94057147 original size:40 final size:40
Alignment explanation
Indices: 94056997--94057164 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
94056987 CGGAATACAA
* * *
94056997 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
94057037 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94057077 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
94057117 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
94057157 CCGGATAT
1 CCGGATAT
94057165 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94058424 original size:18 final size:18
Alignment explanation
Indices: 94058403--94058440 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
94058393 ACTTTTCTTC
* *
94058403 CTTTCTTTTTTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
94058421 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
94058439 CT
1 CT
94058441 CTCATGTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:94060525 original size:40 final size:40
Alignment explanation
Indices: 94060448--94060704 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
94060438 AAACCAAGTA
* * * *
94060448 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
94060487 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94060527 ACTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94060567 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
94060607 CCTTCAAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
94060647 CCTTCAGG-CTTAGCTC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
94060686 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94060705 TTATCATCCG
Statistics
Matches: 192, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
38 3 0.02
39 42 0.22
40 146 0.76
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:94062497 original size:27 final size:27
Alignment explanation
Indices: 94062435--94062503 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
94062425 TTTAAAACCC
*
94062435 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTC-GTAATTTTGCTCTT
94062462 TAGGGGTAATTTCGTAATTTTGCTCTT
1 TAGGGGTAATTTCGTAATTTTGCTCTT
94062489 TAGGGGTAATTTCGT
1 TAGGGGTAATTTCGT
94062504 GATCTACGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 36 0.90
28 4 0.10
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (27 bp):
TAGGGGTAATTTCGTAATTTTGCTCTT
Found at i:94064146 original size:20 final size:20
Alignment explanation
Indices: 94064123--94064160 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94064113 CACATCCAAA
*
94064123 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
94064143 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
94064161 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:94069866 original size:40 final size:40
Alignment explanation
Indices: 94069716--94069883 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
94069706 CGGAATACAA
* * *
94069716 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
94069756 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94069796 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
94069836 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
94069876 CCGGATAT
1 CCGGATAT
94069884 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94071142 original size:17 final size:18
Alignment explanation
Indices: 94071122--94071158 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
94071112 ACTTTTCTTC
*
94071122 CTTTCTTT-TTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
94071139 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
94071157 CT
1 CT
94071159 CTCATGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:94077910 original size:40 final size:40
Alignment explanation
Indices: 94077760--94077927 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
94077750 CGGAATACAA
* * *
94077760 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
94077800 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94077840 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
94077880 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
94077920 CCGGATAT
1 CCGGATAT
94077928 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94079187 original size:18 final size:18
Alignment explanation
Indices: 94079166--94079203 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
94079156 ACTTTTCTTC
* *
94079166 CTTTCTTTTTTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
94079184 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
94079202 CT
1 CT
94079204 CTCATGTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:94083239 original size:53 final size:53
Alignment explanation
Indices: 94083170--94083278 Score: 200
Period size: 53 Copynumber: 2.1 Consensus size: 53
94083160 GTCTAGGTGG
* *
94083170 ATTTTTCCTTAGGTATTGTTTTAATTCAATCATTTTCCAAAAGTAATTCCCCA
1 ATTTTTCCTTAAGTATTGTCTTAATTCAATCATTTTCCAAAAGTAATTCCCCA
94083223 ATTTTTCCTTAAGTATTGTCTTAATTCAATCATTTTCCAAAAGTAATTCCCCA
1 ATTTTTCCTTAAGTATTGTCTTAATTCAATCATTTTCCAAAAGTAATTCCCCA
94083276 ATT
1 ATT
94083279 CTACTTTCTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.45
Consensus pattern (53 bp):
ATTTTTCCTTAAGTATTGTCTTAATTCAATCATTTTCCAAAAGTAATTCCCCA
Found at i:94089577 original size:13 final size:13
Alignment explanation
Indices: 94089561--94089593 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
94089551 TTTAATTAAA
*
94089561 TTAGTTAATTAGT
1 TTAGATAATTAGT
94089574 TTAGATAATTAGT
1 TTAGATAATTAGT
94089587 TT-GATAA
1 TTAGATAA
94089594 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:94093415 original size:6 final size:6
Alignment explanation
Indices: 94093397--94093489 Score: 94
Period size: 6 Copynumber: 16.5 Consensus size: 6
94093387 TCCTCCTATC
*
94093397 TTTTTA TTCTTA TTTTTA TTTATT- TATTTTA -TTTTA -TTTTA -TTTTA
1 TTTTTA TTTTTA TTTTTA TTT-TTA T-TTTTA TTTTTA TTTTTA TTTTTA
*
94093443 -TTTTA -TTTTA -TTTTA TTTTTA TTTTTA -TTTTA TTTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
94093487 TTT
1 TTT
94093490 CAATTTTATT
Statistics
Matches: 79, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
5 35 0.44
6 40 0.51
7 4 0.05
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:94093509 original size:6 final size:5
Alignment explanation
Indices: 94093398--94093499 Score: 118
Period size: 5 Copynumber: 19.4 Consensus size: 5
94093388 CCTCCTATCT
94093398 TTTTA TTCTTA TTTT- TATTTA -TTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TT-TTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
94093448 TTTTA TTTTA TTTTTA TTTTTA TTTTA TTTTTA TTTTCA TTTCAA TTTTA
1 TTTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTT-A TTT-TA TTTTA
94093498 TT
1 TT
94093500 ATTTTAATTT
Statistics
Matches: 87, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
4 5 0.06
5 53 0.61
6 29 0.33
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:94099843 original size:46 final size:46
Alignment explanation
Indices: 94099776--94099951 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
94099766 TATTTGGGCA
94099776 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
94099822 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATG
* * *
94099870 T-CGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
94099915 -CCTGAGCTCATTGAGTTGAGTCCGAGCTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94099952 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 60 0.58
47 29 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94099931 original size:93 final size:93
Alignment explanation
Indices: 94099772--94099940 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
94099762 GGGATATTTG
* * *
94099772 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAG
94099837 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
94099865 GGCATTCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACG-CCTGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCATTGA
94099929 GTTGAGTCCGAG
65 GTTGAGTCCGAG
94099941 CTCGCTTATG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:94106597 original size:43 final size:43
Alignment explanation
Indices: 94106481--94106620 Score: 153
Period size: 43 Copynumber: 3.3 Consensus size: 43
94106471 TATCCTAGAT
* *
94106481 ATGGTCTTACATGTTATC--ACATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACACGTTATCTTA-ATA-CGATGCCAATGTCCCAGAC
* **
94106524 AGGGTCTTACACGAAATCGATTAAT--GATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTTATC--TTAATACGATGCCAATGTCCCAGAC
* *
94106567 ATGGTCTTACACGTTATCTTAATACAATGCCAATGTCTCAGAC
1 ATGGTCTTACACGTTATCTTAATACGATGCCAATGTCCCAGAC
94106610 ATGGTCTTACA
1 ATGGTCTTACA
94106621 TGTAATCACA
Statistics
Matches: 81, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
41 5 0.06
43 73 0.90
46 2 0.02
47 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACACGTTATCTTAATACGATGCCAATGTCCCAGAC
Found at i:94109731 original size:28 final size:28
Alignment explanation
Indices: 94109689--94109757 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
94109679 TTTAAAACCC
*
94109689 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
94109716 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
94109744 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
94109758 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:94111580 original size:19 final size:18
Alignment explanation
Indices: 94111543--94111586 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
94111533 ATACATACAG
94111543 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
94111560 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
94111579 TACTAATT
1 TAATAATT
94111587 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:94114001 original size:28 final size:28
Alignment explanation
Indices: 94113959--94114027 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
94113949 TTTAAAACCC
*
94113959 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
94113986 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
94114014 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
94114028 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:94115851 original size:19 final size:18
Alignment explanation
Indices: 94115814--94115857 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
94115804 ATACATACAG
94115814 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
94115831 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
94115850 TACTAATT
1 TAATAATT
94115858 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:94119712 original size:40 final size:40
Alignment explanation
Indices: 94119655--94119831 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
94119645 CGGATGATAA
*
94119655 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
94119695 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
94119735 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
94119775 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94119815 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
94119832 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 115 0.90
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:94120100 original size:22 final size:22
Alignment explanation
Indices: 94120058--94120101 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
94120048 AAAATGTGCA
* *
94120058 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
94120080 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
94120102 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:94127925 original size:40 final size:40
Alignment explanation
Indices: 94127862--94128037 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
94127852 CGGATGATAA
*
94127862 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGATGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94127901 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
94127941 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
94127981 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94128021 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
94128038 ATACTTGGGT
Statistics
Matches: 129, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
38 1 0.01
39 23 0.18
40 105 0.81
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:94130649 original size:27 final size:27
Alignment explanation
Indices: 94130610--94130711 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 27
94130600 GGAAGCGTCC
*
94130610 TGGTGGCTATGCCACAATTATCTGATT
1 TGGTGGCTCTGCCACAATTATCTGATT
94130637 TGGTGGCTCTGCCACATATT-TCTG-TT
1 TGGTGGCTCTGCCACA-ATTATCTGATT
* *
94130663 CTGGTGGCTCTGCCACGATTATCTGTATC
1 -TGGTGGCTCTGCCACAATTATCTG-ATT
* *
94130692 TGGTGACTCTGTCAC-ATTAT
1 TGGTGGCTCTGCCACAATTAT
94130712 TTGTTCTGGT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
26 5 0.08
27 43 0.66
28 16 0.25
29 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATT
Found at i:94130717 original size:54 final size:54
Alignment explanation
Indices: 94130609--94130721 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
94130599 AGGAAGCGTC
* *
94130609 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTT
* * *
94130663 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATT-TGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATAT-TTCTGTT
94130717 CTGGT
1 CTGGT
94130722 AGCCATGCTG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 33 0.63
55 19 0.37
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTT
Found at i:94137995 original size:16 final size:15
Alignment explanation
Indices: 94137969--94137998 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
94137959 ACTAGATTGG
94137969 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
94137984 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
94137999 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:94138465 original size:27 final size:27
Alignment explanation
Indices: 94138414--94138525 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
94138404 AGGAAGCGTC
*
94138414 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
94138441 CTGGTGGCTCTGCTACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
94138468 CTGGTGTCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
94138496 CTAGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
94138522 CTGG
1 CTGG
94138526 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 7 0.10
27 45 0.66
28 16 0.24
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:94142388 original size:43 final size:43
Alignment explanation
Indices: 94142327--94142485 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
94142317 CAATGTCATA
* * *
94142327 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
** * *** * *
94142370 TCCCAGGTAGGGTCTTACACAAAATCATATAACGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
*
94142413 TCCCAGACATGGTCTTAC-TAGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACAT-GTAATCACATAT-CGATGCCAATG
94142456 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACATGTAATCACAT
94142486 CTCAATAACC
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 1 0.01
43 92 0.98
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:94152958 original size:43 final size:42
Alignment explanation
Indices: 94152803--94152958 Score: 100
Period size: 43 Copynumber: 3.6 Consensus size: 42
94152793 TGTGTTTTTG
* * * * * *
94152803 TGTAAGACCATGTCTGGGACGTGGGCATCG-ACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCACCGTA-TT-TGA-TCACA
* * ** ** *
94152847 TGTAAGGCCATGTCTGGGACATTGGCATTGTATTTGATTTCT
1 TGTAAGACCACGTCTGGGACATTGGCACCGTATTTGATCACA
* * * *
94152889 TGTAAGACC-CTGTCTAGGATAGTGGCACCGATATTTGGTCACA
1 TGTAAGACCAC-GTCTGGGACATTGGCACCG-TATTTGATCACA
94152932 TGTAAGACCACGTCTGGGACATTGGCA
1 TGTAAGACCACGTCTGGGACATTGGCA
94152959 TTGTTCCAAG
Statistics
Matches: 88, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 25 0.28
43 33 0.38
44 29 0.33
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCACCGTATTTGATCACA
Found at i:94167700 original size:28 final size:28
Alignment explanation
Indices: 94167660--94167716 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
94167650 TCATTATAGA
94167660 AAAATAAACACATTTTGGAATGAAACAT
1 AAAATAAACACATTTTGGAATGAAACAT
*
94167688 AAAATAAACACATTTTGGCATGAAACAT
1 AAAATAAACACATTTTGGAATGAAACAT
94167716 A
1 A
94167717 CTTATACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.12, G:0.11, T:0.25
Consensus pattern (28 bp):
AAAATAAACACATTTTGGAATGAAACAT
Found at i:94168070 original size:43 final size:42
Alignment explanation
Indices: 94167909--94168077 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
94167899 ATATAGCTCG
* * * * * *
94167909 TACAATGCC-ATATCCTAGATATGGTCTTATATGTTATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAA
* * * * *
94167950 TATCGATGCCATTAT-TCCCAGATAGGGTCTTACACGAAATCAAA
1 TA-CAATGCCA--ATGTCCCAGACATGGTCTTACATGTAATCAAA
* * *
94167994 TAACGATGCTAATGTCCCAAACATGGTCTTACATGTAATCATAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA-AA
94168038 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
94168078 CATCTCAGTA
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 8 0.08
43 58 0.56
44 33 0.32
45 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAA
Found at i:94169582 original size:93 final size:93
Alignment explanation
Indices: 94169470--94169641 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94169460 GCCCATAAGT
* *
94169470 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94169535 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94169563 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94169628 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94169642 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94169637 original size:46 final size:46
Alignment explanation
Indices: 94169462--94169637 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
94169452 TGTAACCCGC
* * *
94169462 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94169508 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94169558 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
94169601 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94169638 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94172065 original size:30 final size:30
Alignment explanation
Indices: 94172021--94172109 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
94172011 CAAAGATAAC
94172021 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
94172050 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
94172080 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
94172110 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:94172069 original size:15 final size:15
Alignment explanation
Indices: 94172021--94172100 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
94172011 CAAAGATAAC
*
94172021 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
94172035 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
94172050 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
94172065 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
94172080 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
94172095 AAGAAA
1 AAGAAA
94172101 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:94172109 original size:15 final size:15
Alignment explanation
Indices: 94172032--94172109 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
94172022 AGAAAACCGA
94172032 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
94172047 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
94172061 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
94172076 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
94172092 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
94172107 ATA
1 ATA
94172110 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94175176 original size:93 final size:93
Alignment explanation
Indices: 94175064--94175235 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94175054 GCCCATAAGT
* *
94175064 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94175129 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94175157 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94175222 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94175236 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94175231 original size:46 final size:46
Alignment explanation
Indices: 94175056--94175231 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
94175046 TGTAACCCGC
* * *
94175056 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94175102 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94175152 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
94175195 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94175232 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94181372 original size:41 final size:43
Alignment explanation
Indices: 94181261--94181382 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
94181251 ACTTTTGATG
* *
94181261 TGAG-ATTCGTGTACGACCATGTCTGGGACATTGGCATTGAAA
1 TGAGAATTCGTGTAAGACCATGTCTGGGACATTGGCATCGAAA
** * *
94181303 TGAGAAAACGTGTAAGACCATGTTTGGGACATTGGCATCG-TA
1 TGAGAATTCGTGTAAGACCATGTCTGGGACATTGGCATCGAAA
* * *
94181345 T-ATAATTCGTGTAAGAGCC-TGTCTGGGATAGTGGCATC
1 TGAGAATTCGTGTAAGA-CCATGTCTGGGACATTGGCATC
94181383 ATGTAACAGC
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 28 0.42
42 8 0.12
43 30 0.45
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
TGAGAATTCGTGTAAGACCATGTCTGGGACATTGGCATCGAAA
Found at i:94182653 original size:23 final size:23
Alignment explanation
Indices: 94182626--94182740 Score: 117
Period size: 23 Copynumber: 4.9 Consensus size: 23
94182616 ACAGCTCGTA
*
94182626 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* ***
94182649 GGAGCTTACAAATTCAGCTCGAA-
1 AGAGCTTACTGTTTCAGCTC-AAT
*
94182672 AGAGCTTACTG-TTCAGCTTAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
94182694 AGAGCTTACTATTTTCAGCTCAAT
1 AGAGCTTACT-GTTTCAGCTCAAT
94182718 AGAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT--TCAGCTCA
94182741 GGAGGACCTT
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
21 2 0.03
22 17 0.23
23 26 0.35
24 21 0.28
25 8 0.11
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:94182684 original size:46 final size:47
Alignment explanation
Indices: 94182617--94182740 Score: 146
Period size: 46 Copynumber: 2.6 Consensus size: 47
94182607 GGACTCACCA
* * *
94182617 CAGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGAGCTTAC-AAATT
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTAAATT
* **
94182663 CAGCTCGAAAGAGCTTACTG-TTCAGCTTAATAGAGCTTACTATTTT
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTAAATT
94182709 CAGCTC-AATAGAGCTTACTGTTCATCAGCTCA
1 CAGCTCGAA-AGAGCTTACTGTT--TCAGCTCA
94182741 GGAGGACCTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
45 19 0.29
46 39 0.59
47 1 0.02
49 7 0.11
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (47 bp):
CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTAAATT
Found at i:94190182 original size:22 final size:22
Alignment explanation
Indices: 94190135--94190217 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
94190125 CACCTCATTG
* *
94190135 GAGCTTACTGATTCAGCTTGAA-A
1 GAGCTTATTG-TTCAGC-TCAATA
*
94190158 GAGCTTATTGTTCAGGTCAATA
1 GAGCTTATTGTTCAGCTCAATA
* * *
94190180 GAGCTTACTGTTTTTAGCTCAATG
1 GAGCTTA-T-TGTTCAGCTCAATA
94190204 GAGCTTATTGTTCA
1 GAGCTTATTGTTCA
94190218 TCAACTTAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
21 3 0.06
22 17 0.35
23 11 0.23
24 17 0.35
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (22 bp):
GAGCTTATTGTTCAGCTCAATA
Found at i:94190482 original size:15 final size:15
Alignment explanation
Indices: 94190462--94190491 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
94190452 GTTAAATGAC
94190462 TAACATGTGATAACT
1 TAACATGTGATAACT
94190477 TAACATGTGATAACT
1 TAACATGTGATAACT
94190492 AGGTGTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
TAACATGTGATAACT
Found at i:94197849 original size:42 final size:43
Alignment explanation
Indices: 94197748--94197860 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 43
94197738 AGCTCGTACA
* *
94197748 ATGCCAACGTCCTAGACAAGGTCTTACATGTAATAAAATATCG
1 ATGCCAATGTCCTAGACAAGGTCTTACATGAAATAAAATATCG
* * * *
94197791 ATGCCACTGTCCTAGACAGGGTCTTACATGAAATCATATAT-G
1 ATGCCAATGTCCTAGACAAGGTCTTACATGAAATAAAATATCG
*
94197833 ATGCCAATGTCCTAGACATGGTCTTACA
1 ATGCCAATGTCCTAGACAAGGTCTTACA
94197861 CGTTCTCAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
42 27 0.44
43 35 0.56
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACAAGGTCTTACATGAAATAAAATATCG
Done.