Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 325 of 427
Found at i:94761260 original size:21 final size:21
Alignment explanation
Indices: 94761207--94761369 Score: 114
Period size: 21 Copynumber: 7.9 Consensus size: 21
94761197 CTTTTCGTTT
* * * *
94761207 AGCTCTCATAAGCTTCTATTT
1 AGCTCTTATGAGCTTCTGTTC
* * *
94761228 AACTCATATGAGTTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTC
* *
94761249 AGCTCTTTTGAGCTTCTGTTT
1 AGCTCTTATGAGCTTCTGTTC
* * * * *
94761270 AACCCTTATAAGTTTCCGTTC
1 AGCTCTTATGAGCTTCTGTTC
*
94761291 AGCTCTTATGAGCTTCCGTTC
1 AGCTCTTATGAGCTTCTGTTC
* * * * *
94761312 AACCCTTATGGGTTTCTGTTT
1 AGCTCTTATGAGCTTCTGTTC
*
94761333 AGCTCTCATGAGCTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTC
*
94761354 AGC-CTT-TGGGCTTCTG
1 AGCTCTTATGAGCTTCTG
94761370 AAAATGATGT
Statistics
Matches: 105, Mismatches: 37, Indels: 2
0.73 0.26 0.01
Matches are distributed among these distances:
19 9 0.09
20 2 0.02
21 94 0.90
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.42
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTGTTC
Found at i:94761271 original size:42 final size:42
Alignment explanation
Indices: 94761199--94761352 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 42
94761189 CTTGTTTACT
* * * * * *
94761199 TTTC-GTTTAGCTCTCATAAGCTTCTATTTAACTCATATGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTATGAG
* *
94761240 TTTCTGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATAAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTATGAG
* * * *
94761282 TTTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTATGAG
* *
94761324 TTTCTGTTTAGCTCTCATGAGCTTCTGTT
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTT
94761353 CAGCCTTTGG
Statistics
Matches: 94, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
41 4 0.04
42 90 0.96
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.45
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTATGAG
Found at i:94761354 original size:63 final size:63
Alignment explanation
Indices: 94761199--94761356 Score: 156
Period size: 63 Copynumber: 2.5 Consensus size: 63
94761189 CTTGTTTACT
* * * * * * * *
94761199 TTTC-GTTTAGCTCTCATAAGCTTCTATTTAACTCATATGAGTTTCTGTTCAGCTCTTTTGAG
1 TTTCTGTTTAGCTCTCATAAGCTTCTGTTCAGCTCATATGAGCTTCCGTTCAACCCTTATGAG
* * * * * * * *
94761261 CTTCTGTTTAACCCTTATAAGTTTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGGG
1 TTTCTGTTTAGCTCTCATAAGCTTCTGTTCAGCTCATATGAGCTTCCGTTCAACCCTTATGAG
*
94761324 TTTCTGTTTAGCTCTCATGAGCTTCTGTTCAGC
1 TTTCTGTTTAGCTCTCATAAGCTTCTGTTCAGC
94761357 CTTTGGGCTT
Statistics
Matches: 72, Mismatches: 23, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
62 3 0.04
63 69 0.96
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.44
Consensus pattern (63 bp):
TTTCTGTTTAGCTCTCATAAGCTTCTGTTCAGCTCATATGAGCTTCCGTTCAACCCTTATGAG
Found at i:94763744 original size:31 final size:31
Alignment explanation
Indices: 94763702--94763818 Score: 180
Period size: 31 Copynumber: 3.8 Consensus size: 31
94763692 TTGTCACTTT
* *
94763702 TAGCTGAAGCTACCACTATTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* * *
94763733 TAGCCGGAGCTATCATTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
94763764 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
94763795 TAGCCGAAGCTATCACTTTTCACT
1 TAGCCGAAGCTACCACTTTTCACT
94763819 TGTCATTTGT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGG
Found at i:94763897 original size:50 final size:50
Alignment explanation
Indices: 94763794--94763970 Score: 291
Period size: 50 Copynumber: 3.5 Consensus size: 50
94763784 CACTGATCAG
* *
94763794 GTAGCCGAAGCTATCACTTTTCACTTGTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATTAGATAAGT
* *
94763845 GTAGCCGAAGCTATCATTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATTAGATAAGT
* *
94763895 GTAGCCGAAGCTATTACTTATCACTTTCACTTGTCTTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATTAGATAAGT
94763945 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
94763971 ATTGCCATGG
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 93 0.79
51 24 0.21
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.37
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATTAGATAAGT
Found at i:94766531 original size:25 final size:25
Alignment explanation
Indices: 94766503--94766631 Score: 113
Period size: 25 Copynumber: 5.1 Consensus size: 25
94766493 AAGCATATAC
*
94766503 ATAGTATTAAAAATATGTACATAAT
1 ATAGTATTAAAAATATATACATAAT
* *
94766528 ATAGTGTT-AAAATACATACATAAT
1 ATAGTATTAAAAATATATACATAAT
* *
94766552 ATAGTTATTAAAAAATATATACATGAG
1 ATAG-TATT-AAAAATATATACATAAT
** *
94766579 ATAACA-TAAAAAGTATATGA-ATAGT
1 ATAGTATTAAAAA-TATAT-ACATAAT
94766604 AT-GATATTAAAAATATATACATAAT
1 ATAG-TATTAAAAATATATACATAAT
94766629 ATA
1 ATA
94766632 AAAAAACATA
Statistics
Matches: 80, Mismatches: 15, Indels: 17
0.71 0.13 0.15
Matches are distributed among these distances:
24 24 0.30
25 32 0.40
26 8 0.10
27 16 0.20
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (25 bp):
ATAGTATTAAAAATATATACATAAT
Found at i:94766642 original size:21 final size:23
Alignment explanation
Indices: 94766612--94766654 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
94766602 GTATGATATT
*
94766612 AAAAATATATAC-ATA-ATATAA
1 AAAAACATATACAATATATATAA
94766633 AAAAACATATACAATATATATA
1 AAAAACATATACAATATATATA
94766655 TATTAGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 3 0.16
23 5 0.26
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAAACATATACAATATATATAA
Found at i:94766797 original size:3 final size:3
Alignment explanation
Indices: 94766782--94766823 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
94766772 AAACTAGTAC
* *
94766782 TAA TAA TAT TAA TAA TAA -ATA TAA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
94766824 ATATATATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 1 0.03
3 31 0.94
4 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:94766949 original size:21 final size:21
Alignment explanation
Indices: 94766922--94766970 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
94766912 TACTAAATAT
94766922 AAATATATTA-ATAGTATTAA
1 AAATATATTACATAGTATTAA
94766942 AAAGTATA-TACATAGTATTAA
1 AAA-TATATTACATAGTATTAA
94766963 AAATATAT
1 AAATATAT
94766971 ATATTATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (21 bp):
AAATATATTACATAGTATTAA
Found at i:94766987 original size:47 final size:42
Alignment explanation
Indices: 94766915--94767079 Score: 100
Period size: 45 Copynumber: 3.7 Consensus size: 42
94766905 GTATATATAC
* * *
94766915 TAAATATAAATATATTAATAGTATTAAAAAGTATATACATAGTAT
1 TAAAAATAAATATATTAATAATATTAAAAA-TA-ATA-ATAATAT
* *
94766960 TAAAAATATATATATTATATACATATTAGAAATAATAATAATAT
1 TAAAAATAAATATATTA-ATA-ATATTAAAAATAATAATAATAT
* * * *
94767004 TAAAAA-CAA-CTATTAATAATACTACATAAATATACACATATATAT
1 TAAAAATAAATATATTAATAATATTA-A-AAATA-ATA-ATA-ATAT
* * *
94767049 TAAAAATATATACATAATAATGATATTAAAA
1 TAAAAATA-A-ATATATTAATAATATTAAAA
94767080 GCATGTACGT
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
40 5 0.05
41 3 0.03
42 10 0.11
43 3 0.03
44 15 0.16
45 28 0.30
46 5 0.05
47 11 0.12
48 2 0.02
49 11 0.12
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.35
Consensus pattern (42 bp):
TAAAAATAAATATATTAATAATATTAAAAATAATAATAATAT
Found at i:94766996 original size:29 final size:29
Alignment explanation
Indices: 94766946--94767005 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
94766936 TATTAAAAAG
*
94766946 TATATACATAGTATTAAAAAT-ATATATAT
1 TATATACATAGTATGAAAAATAATA-ATAT
*
94766975 TATATACATATTA-GAAATAATAATAATAT
1 TATATACATAGTATGAAA-AATAATAATAT
94767004 TA
1 TA
94767006 AAAACAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 3 0.11
29 21 0.78
30 3 0.11
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (29 bp):
TATATACATAGTATGAAAAATAATAATAT
Found at i:94767077 original size:26 final size:25
Alignment explanation
Indices: 94767033--94767195 Score: 113
Period size: 26 Copynumber: 6.5 Consensus size: 25
94767023 TACTACATAA
*
94767033 ATATACA-CATAT-ATATTAAAAAT
1 ATATACATAATATGATATTAAAAAT
**
94767056 ATATACATAATAATGATATTAAAAGC
1 ATATACATAAT-ATGATATTAAAAAT
* * *
94767082 ATGTACGTAATAT-AGTGTTAAAAAT
1 ATATACATAATATGA-TATTAAAAAT
* *
94767107 ACATACATAATATAGTTATTAAAAA-
1 ATATACATAATAT-GATATTAAAAAT
* * * *
94767132 ATATATATACATAAGATAAT-AAGAT
1 ATATACATA-ATATGATATTAAAAAT
*
94767157 ATATGA-ATAATATGATATAAAAATAT
1 ATAT-ACATAATATGATATTAAAA-AT
94767183 ATATACATAATAT
1 ATATACATAATAT
94767196 ATAAAAAATC
Statistics
Matches: 105, Mismatches: 23, Indels: 21
0.70 0.15 0.14
Matches are distributed among these distances:
23 7 0.07
24 13 0.12
25 42 0.40
26 43 0.41
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.34
Consensus pattern (25 bp):
ATATACATAATATGATATTAAAAAT
Found at i:94767198 original size:39 final size:40
Alignment explanation
Indices: 94767142--94767249 Score: 93
Period size: 39 Copynumber: 2.8 Consensus size: 40
94767132 ATATATATAC
* * *
94767142 ATAAGATA-ATAAGATATATGAATAATATGATA-TAAAAAT
1 ATAATATACATAATATATAT-AATAATATGATATTAAAAAA
* * *
94767181 AT-ATATACATAATATATA-AAAAATCTAATATTAAAAAA
1 ATAATATACATAATATATATAATAATATGATATTAAAAAA
* *
94767219 ATAATATACGTAATATA-ATATTAATAT-ATAT
1 ATAATATACATAATATATATAATAATATGATAT
94767250 GCGTAATATG
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
37 9 0.16
38 17 0.31
39 29 0.53
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (40 bp):
ATAATATACATAATATATATAATAATATGATATTAAAAAA
Found at i:94767223 original size:14 final size:16
Alignment explanation
Indices: 94767189--94767226 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
94767179 ATATATATAC
94767189 ATAATATATAAAAAAT
1 ATAATATATAAAAAAT
*
94767205 CTAATAT-TAAAAAA-
1 ATAATATATAAAAAAT
94767219 ATAATATA
1 ATAATATA
94767227 CGTAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 6 0.32
15 7 0.37
16 6 0.32
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATATATAAAAAAT
Found at i:94775105 original size:37 final size:36
Alignment explanation
Indices: 94775055--94775141 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
94775045 TACGAAGTCT
94775055 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
94775091 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
94775128 TCACCCGGAACATA
1 T-ACCCGG-ACATA
94775142 TTTCCAAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:94775287 original size:49 final size:49
Alignment explanation
Indices: 94775216--94775365 Score: 273
Period size: 49 Copynumber: 3.0 Consensus size: 49
94775206 ACATATATAG
*
94775216 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
94775265 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
94775314 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATATACATAT
1 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT-CACATAT
94775364 AT
1 AT
94775366 TATTATGTAC
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
49 90 0.92
50 8 0.08
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (49 bp):
ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:94781114 original size:22 final size:22
Alignment explanation
Indices: 94781089--94781135 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
94781079 TCATCTTACG
*
94781089 CTTTAGTGCTTA-CTGTTTCGCA
1 CTTTAGTGCTTATC-GTTCCGCA
*
94781111 CTTTGGTGCTTATCGTTCCGCA
1 CTTTAGTGCTTATCGTTCCGCA
94781133 CTT
1 CTT
94781136 CAGTACCTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.11, C:0.26, G:0.19, T:0.45
Consensus pattern (22 bp):
CTTTAGTGCTTATCGTTCCGCA
Found at i:94783608 original size:30 final size:29
Alignment explanation
Indices: 94783560--94783632 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
94783550 ATTAATAATT
* * * *
94783560 TATAAGAATTGGATCAAATCAAAATTTCATA
1 TATAA-AATTGCACCAAAT-AAAAGTTCACA
*
94783591 TATAAAATTGCACCAAATTAAAGTTCACA
1 TATAAAATTGCACCAAATAAAAGTTCACA
*
94783620 TATACAATTGCAC
1 TATAAAATTGCAC
94783633 ATTAAACTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 20 0.56
30 11 0.31
31 5 0.14
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.30
Consensus pattern (29 bp):
TATAAAATTGCACCAAATAAAAGTTCACA
Found at i:94795324 original size:31 final size:31
Alignment explanation
Indices: 94795287--94795366 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 31
94795277 CTTGTCACTT
*
94795287 GTAGCCGAAGCTATCACTATTCACTGATCAA
1 GTAGCCGAAGCTACCACTATTCACTGATCAA
* * * * * *
94795318 GTAGCCGGAGCTACCATTTTTCATTGATTAG
1 GTAGCCGAAGCTACCACTATTCACTGATCAA
94795349 GTAGCCGAAGCTACCACT
1 GTAGCCGAAGCTACCACT
94795367 TTTTACTTGT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAA
Found at i:94795442 original size:50 final size:50
Alignment explanation
Indices: 94795349--94795625 Score: 473
Period size: 50 Copynumber: 5.5 Consensus size: 50
94795339 CATTGATTAG
* * *
94795349 GTAGCCGAAGCTACCACTTTTTACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
94795400 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
94795450 GTAGTCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
94795500 GTTGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
94795550 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
94795600 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
94795626 GTTGCCATGG
Statistics
Matches: 215, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
50 193 0.90
51 22 0.10
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:94820906 original size:50 final size:51
Alignment explanation
Indices: 94820831--94820957 Score: 211
Period size: 50 Copynumber: 2.5 Consensus size: 51
94820821 CCATGGCAAT
94820831 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA-
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAC
*
94820881 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGAC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAC
* * *
94820932 AAGTGAAAAGTGGTAGCTTCTGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
94820958 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
50 49 0.68
51 23 0.32
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (51 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAC
Found at i:94820971 original size:31 final size:31
Alignment explanation
Indices: 94820933--94821050 Score: 175
Period size: 31 Copynumber: 3.8 Consensus size: 31
94820923 ACAAATGACA
*
94820933 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
94820964 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
94820995 AGTGAAAAGTGGCAGC-TCAGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
94821026 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
94821051 AAGTAAGAAG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 1 0.01
31 74 0.96
32 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:94821177 original size:49 final size:49
Alignment explanation
Indices: 94821070--94821202 Score: 157
Period size: 49 Copynumber: 2.8 Consensus size: 49
94821060 GTGATTTCCA
* *
94821070 TATAAGACCATATCTGGGATATGGCATCG--GTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGCTATGGCATCGATATGTGATATATGCTACTG
* * *
94821117 TATAAAACCATATCTGGGCTATGGCATCGATATGTGATATGTGATTA-TG
1 TATAAGACCATATCTGGGCTATGGCATCGATATGTGATATATG-CTACTG
* *
94821166 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 TATAAGACCATATCTGGGCTATGGCATCGA-TATGTGA
94821203 AGATGTGTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
47 27 0.36
48 1 0.01
49 44 0.59
50 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (49 bp):
TATAAGACCATATCTGGGCTATGGCATCGATATGTGATATATGCTACTG
Found at i:94821230 original size:42 final size:42
Alignment explanation
Indices: 94821154--94821235 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
94821144 CGATATGTGA
** * **
94821154 TATGTGATTATGTGTAAGACCATAGCTGGGCTATGGCATCAT
1 TATGTGAAGATGTGTAAGACCATAACTGAACTATGGCATCAT
*
94821196 TATGTGAAGATGTGTAAGACCATAATTGAACTATGGCATC
1 TATGTGAAGATGTGTAAGACCATAACTGAACTATGGCATC
94821236 GAGGAAACGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (42 bp):
TATGTGAAGATGTGTAAGACCATAACTGAACTATGGCATCAT
Found at i:94823418 original size:51 final size:49
Alignment explanation
Indices: 94823252--94823433 Score: 197
Period size: 50 Copynumber: 3.7 Consensus size: 49
94823242 ATCTGATACG
* * * *
94823252 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCG-GTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAT-TGAGTACA
* * * *
94823301 CGTAGTAGCCTGCACTTAATACTACACACGTGACCTCACCATTTGA-TACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCA-TTGAGTACA
* * **
94823351 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCATTGAGTACA
94823402 CATAGTAGCCTGCACTTAGTACTACACACGTG
1 CATAGTAGCCTGCACTTAGTACTACACACGTG
94823434 TATTCACAAT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 31 0.28
50 44 0.39
51 37 0.33
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATCATTGAGTACA
Found at i:94826469 original size:39 final size:39
Alignment explanation
Indices: 94826378--94826517 Score: 183
Period size: 39 Copynumber: 3.6 Consensus size: 39
94826368 TCGAATATAA
* * **
94826378 TGACTCGCTCAAATGCCTTCGGGACGAAACCCGGTTATAG
1 TGACTCGCACGAATGCCTTCGGGACTTAACCCGGTT-TAG
*
94826418 TGACTCACACGAATGCCTTCGGGACTTAACCCGGTTTAG
1 TGACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAG
* *
94826457 TGACTCGCACGAATGCCTTCGGG-CTTAGCCCGGATTTAT
1 TGACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAG
*
94826496 TAACTCGCACGAATGCCTTCGG
1 TGACTCGCACGAATGCCTTCGG
94826518 ATCCTAGTCC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 9 0.10
39 50 0.56
40 31 0.34
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
TGACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAG
Found at i:94826570 original size:40 final size:40
Alignment explanation
Indices: 94826380--94826570 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 40
94826370 GAATATAATG
* * ** * *
94826380 ACTCGCTCAAATGCCTTCGGGACGAAACCCGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
94826420 ACTCACACGAATGCCTTCGGGACTTAACCCGG-TTTAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
94826459 ACTCGCACGAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
94826498 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * *
94826538 ACTTAGTAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGGA
94826571 CATCATTCGA
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
38 11 0.09
39 48 0.38
40 61 0.48
41 7 0.06
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:94830710 original size:22 final size:22
Alignment explanation
Indices: 94830682--94830726 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
94830672 GGAACTGGAG
94830682 AAAGTTATTGAAGCTTAAACTT
1 AAAGTTATTGAAGCTTAAACTT
* *
94830704 AAAGTTATTGAAGTTTAGACTT
1 AAAGTTATTGAAGCTTAAACTT
94830726 A
1 A
94830727 CTGCTGCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
AAAGTTATTGAAGCTTAAACTT
Found at i:94835683 original size:2 final size:2
Alignment explanation
Indices: 94835676--94835746 Score: 126
Period size: 2 Copynumber: 36.0 Consensus size: 2
94835666 TATTTGATAT
*
94835676 GA GA GA GA GA GA -A CA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
94835717 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
94835747 ATTAAAGCTG
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
1 1 0.01
2 66 0.99
ACGTcount: A:0.51, C:0.01, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:94836477 original size:2 final size:2
Alignment explanation
Indices: 94836470--94836530 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
94836460 TTATGCCCAT
94836470 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
94836512 GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA G
94836531 TGTCTTTCGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:94836798 original size:3 final size:3
Alignment explanation
Indices: 94836790--94836814 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
94836780 ATACTTAATT
94836790 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
94836815 TTCTACTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:94840901 original size:3 final size:3
Alignment explanation
Indices: 94840893--94840932 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
94840883 TTTGTATGAA
94840893 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
94840933 TCTGATATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:94842546 original size:15 final size:15
Alignment explanation
Indices: 94842526--94842582 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
94842516 ATTCAATATT
94842526 AATATTTTAATAATA
1 AATATTTTAATAATA
*
94842541 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
94842560 AATATATTAATAATA
1 AATATTTTAATAATA
94842575 AATATTTT
1 AATATTTT
94842583 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:94848534 original size:6 final size:6
Alignment explanation
Indices: 94848523--94848553 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
94848513 CCATATTACT
94848523 TTTCAA TTTCAA TTTCAA TTTCAA TTT-AA TT
1 TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TT
94848554 ACAACTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (6 bp):
TTTCAA
Found at i:94849613 original size:3 final size:3
Alignment explanation
Indices: 94849605--94849665 Score: 113
Period size: 3 Copynumber: 20.0 Consensus size: 3
94849595 AATTATAATT
94849605 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
94849651 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
94849666 ATATCTATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:94849820 original size:18 final size:19
Alignment explanation
Indices: 94849797--94849832 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94849787 AATATAGTTA
94849797 TTTAA-TTAATAAATATAT
1 TTTAATTTAATAAATATAT
*
94849815 TTTAATTTAATAATTATA
1 TTTAATTTAATAAATATA
94849833 ATAAATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAATTTAATAAATATAT
Found at i:94849986 original size:23 final size:25
Alignment explanation
Indices: 94849960--94850017 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
94849950 TTTATTTCCT
94849960 TTAATATAATATCT-TAA-TTTTAA
1 TTAATATAATATCTATAAGTTTTAA
94849983 TTAATAT-A-ATCTATAATGTTTTAA
1 TTAATATAATATCTATAA-GTTTTAA
94850007 TTAA-ATAATAT
1 TTAATATAATAT
94850018 TTTTATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
21 4 0.13
22 4 0.13
23 9 0.30
24 11 0.37
25 2 0.07
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (25 bp):
TTAATATAATATCTATAAGTTTTAA
Found at i:94852654 original size:40 final size:40
Alignment explanation
Indices: 94852577--94852890 Score: 313
Period size: 40 Copynumber: 8.5 Consensus size: 40
94852567 AAACCAAGTA
* *
94852577 CCTTCGGGATTTAG-CCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCTCAAATG
*
94852616 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* *
94852656 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
94852696 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTC--A--
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
94852732 --------ACTTAGCCCGGATATAGTAACTCGCTC-AA--
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
*
94852761 -CTT----A--T--CCCGGATATAGTAACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
*
94852792 CCTTCGGGACTTAGCCCGGATCTAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* * * *
94852832 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCTCAAATG
*
94852872 CCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94852891 TTATCATTCG
Statistics
Matches: 241, Mismatches: 15, Indels: 37
0.82 0.05 0.13
Matches are distributed among these distances:
28 47 0.20
29 3 0.01
30 1 0.00
32 4 0.02
36 1 0.00
38 2 0.01
39 14 0.06
40 169 0.70
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
Found at i:94852744 original size:28 final size:28
Alignment explanation
Indices: 94852704--94852788 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
94852694 TGCCTTCGGG
94852704 ACTTAGCCCGGATATAGTAACTCGCTCA
1 ACTTAGCCCGGATATAGTAACTCGCTCA
94852732 ACTTAGCCCGGATATAGTAACTCGCTCA
1 ACTTAGCCCGGATATAGTAACTCGCTCA
* *
94852760 ACTTATCCCGGATATAGTAACTTGCTCA
1 ACTTAGCCCGGATATAGTAACTCGCTCA
94852788 A
1 A
94852789 ATGCCTTCGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
ACTTAGCCCGGATATAGTAACTCGCTCA
Found at i:94860705 original size:40 final size:40
Alignment explanation
Indices: 94860628--94860965 Score: 502
Period size: 40 Copynumber: 8.5 Consensus size: 40
94860618 AAACCAAGTA
* * *
94860628 CCTTCGAGATTTAG-CCGGCTATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCTCAAATG
* *
94860667 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* *
94860707 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
94860747 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
*
94860787 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
*
94860827 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
94860867 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
* * * * *
94860907 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCTCAAATG
*
94860947 CCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94860966 TTATCATTCG
Statistics
Matches: 276, Mismatches: 20, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.05
40 262 0.95
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
Found at i:94869738 original size:16 final size:16
Alignment explanation
Indices: 94869717--94869748 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
94869707 AACAAAGCTT
94869717 GTGAATTGTGTTATTG
1 GTGAATTGTGTTATTG
94869733 GTGAATTGTGTTATTG
1 GTGAATTGTGTTATTG
94869749 ATTCTGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (16 bp):
GTGAATTGTGTTATTG
Found at i:94870670 original size:54 final size:54
Alignment explanation
Indices: 94870607--94870735 Score: 186
Period size: 54 Copynumber: 2.4 Consensus size: 54
94870597 TTTAGTTTAA
* ** * *
94870607 TTAATTAAGTTGCTGGAATAAATTCCTCGTCTTAGTTAATTGAGTTCATCTTAG
1 TTAATTAAGTTGCTGGAATAAATTACTCACCTTAGTTAATTAAGTTCATCTTAC
94870661 TTAATTAAGTTGCTGGAATAAATTACTCACCTTAGTTAATTAAGTTCATCTTAC
1 TTAATTAAGTTGCTGGAATAAATTACTCACCTTAGTTAATTAAGTTCATCTTAC
* * *
94870715 CTAATTTAGTTACTGGAATAA
1 TTAATTAAGTTGCTGGAATAA
94870736 TTTATTGTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (54 bp):
TTAATTAAGTTGCTGGAATAAATTACTCACCTTAGTTAATTAAGTTCATCTTAC
Found at i:94870811 original size:9 final size:9
Alignment explanation
Indices: 94870788--94870833 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
94870778 TAAGTATAAT
94870788 ATGTGTTTAA
1 ATGTGTTT-A
94870798 ATGTGTTTA
1 ATGTGTTTA
94870807 ATGTGTTTA
1 ATGTGTTTA
*
94870816 ATGAGTTTTA
1 ATGTG-TTTA
*
94870826 ATATGTTT
1 ATGTGTTT
94870834 GTTTATAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 17 0.53
10 15 0.47
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:94870825 original size:19 final size:19
Alignment explanation
Indices: 94870788--94870833 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
94870778 TAAGTATAAT
*
94870788 ATGTGTTTAAATGTGTTTA
1 ATGTGTTTAAATGAGTTTA
94870807 ATGTGTTT-AATGAGTTTTA
1 ATGTGTTTAAATGAG-TTTA
*
94870826 ATATGTTT
1 ATGTGTTT
94870834 GTTTATAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (19 bp):
ATGTGTTTAAATGAGTTTA
Found at i:94872485 original size:27 final size:27
Alignment explanation
Indices: 94872437--94872541 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
94872427 GCGAGGCTGC
* *
94872437 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
94872464 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
94872490 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
94872517 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
94872542 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.12
27 58 0.84
28 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:94875979 original size:14 final size:15
Alignment explanation
Indices: 94875956--94875988 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
94875946 TTTTGATGTT
94875956 TTTC-TTCCTCTT-C
1 TTTCTTTCCTCTTCC
94875969 TTTCTTTCCTCTTCC
1 TTTCTTTCCTCTTCC
94875984 TTTCT
1 TTTCT
94875989 CGATTCTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 8 0.44
15 6 0.33
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTCTTTCCTCTTCC
Found at i:94879315 original size:21 final size:23
Alignment explanation
Indices: 94879266--94879319 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
94879256 ACTCTGTACT
* * *
94879266 ATTTCATATCAATTGTCATTCTT
1 ATTTCATTTCAATTGTCAATCTA
94879289 ATTTCATTTCAA-T-TCAATCTA
1 ATTTCATTTCAATTGTCAATCTA
94879310 ATTTCATTTC
1 ATTTCATTTC
94879320 GTTCTCTAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 16 0.57
22 1 0.04
23 11 0.39
ACGTcount: A:0.28, C:0.19, G:0.02, T:0.52
Consensus pattern (23 bp):
ATTTCATTTCAATTGTCAATCTA
Found at i:94886871 original size:40 final size:39
Alignment explanation
Indices: 94886719--94886873 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
94886709 AATTTGCAAA
94886719 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
*
94886758 TTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
* *
94886797 CTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
* *
94886836 TTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
94886874 GGTTACCATA
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
Found at i:94886889 original size:40 final size:39
Alignment explanation
Indices: 94886722--94886904 Score: 249
Period size: 39 Copynumber: 4.6 Consensus size: 39
94886712 TTGCAAATTG
*
94886722 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
94886761 TGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
94886800 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
94886839 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
94886879 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
94886905 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:94893970 original size:39 final size:39
Alignment explanation
Indices: 94893912--94894074 Score: 256
Period size: 39 Copynumber: 4.2 Consensus size: 39
94893902 GATGTGTATG
*
94893912 AATT-TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
94893950 AATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
* * *
94893989 AATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
*
94894028 AATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
*
94894068 ATTTGTG
1 AATTGTG
94894075 TGGGTTACCA
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 4 0.04
39 95 0.83
40 15 0.13
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
AATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:94894688 original size:15 final size:15
Alignment explanation
Indices: 94894668--94894696 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94894658 TGATTCTATA
94894668 ATCGTTTGTATGATG
1 ATCGTTTGTATGATG
94894683 ATCGTTTGTATGAT
1 ATCGTTTGTATGAT
94894697 TGAATATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48
Consensus pattern (15 bp):
ATCGTTTGTATGATG
Found at i:94905072 original size:40 final size:40
Alignment explanation
Indices: 94905013--94905205 Score: 215
Period size: 40 Copynumber: 4.8 Consensus size: 40
94905003 CAATTGAATG
* * * *
94905013 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
94905053 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
94905093 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
94905133 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
94905173 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
94905206 TGTGGTTATA
Statistics
Matches: 130, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:94913173 original size:48 final size:47
Alignment explanation
Indices: 94912835--94913200 Score: 186
Period size: 47 Copynumber: 7.7 Consensus size: 47
94912825 GGATATAATA
* * *
94912835 CCGATGCCATGTCCCAGACATGGTATTACATTGGCTCATCCATCAA-GTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGAG
* * * * *
94912884 --GATGACATGTCCCAGGCATGGTCTTACACTGACTATCAAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GA-G
* ** * * **
94912931 CCGACGTTATGTCCTAGACATGGTCTTACACTAGCTCTCACATTTTCGTA-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATAAT-G-AG
* * * * * * *
94912981 CCGAGGCCATGTCCCAGACATAGTCTTATACTGACACCTC-TATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-ATGAG
* * * * *
94913029 CCGATGCCATGTCCCAAACATGGTCTTACAATGACACATC-T--CGCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATG-AG
* * *
94913075 CTGATG-CATGTCCCAGACAT-GTCTTACATTAGCTCTTGTC-TCAAT--G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC---TCAT-AATGAG
94913121 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
*
94913168 ACCGATG-CATGTCCCCGACAT-GTCTTACACTGG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGG
94913201 TACACAAATA
Statistics
Matches: 242, Mismatches: 51, Indels: 51
0.70 0.15 0.15
Matches are distributed among these distances:
44 13 0.05
45 22 0.09
46 30 0.12
47 59 0.24
48 54 0.22
49 29 0.12
50 27 0.11
51 7 0.03
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
Found at i:94919568 original size:6 final size:6
Alignment explanation
Indices: 94919559--94919597 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
94919549 ATTGAAATGG
94919559 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
94919598 GATAATAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:94921284 original size:11 final size:11
Alignment explanation
Indices: 94921264--94921289 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
94921254 AGGAAAAATG
94921264 GAGGGAAAAGT
1 GAGGGAAAAGT
94921275 GAGGGAAAAGT
1 GAGGGAAAAGT
94921286 GAGG
1 GAGG
94921290 ATTAATTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.50, T:0.08
Consensus pattern (11 bp):
GAGGGAAAAGT
Found at i:94925584 original size:16 final size:16
Alignment explanation
Indices: 94925563--94925596 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
94925553 CAAAAGTATG
94925563 AAAATAACAAAACATA
1 AAAATAACAAAACATA
94925579 AAAATAACAAAACATA
1 AAAATAACAAAACATA
94925595 AA
1 AA
94925597 GAAAACTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAATAACAAAACATA
Found at i:94933591 original size:13 final size:13
Alignment explanation
Indices: 94933573--94933616 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
94933563 TTCGTATAGC
94933573 CATTTCATTTAAA
1 CATTTCATTTAAA
*
94933586 CATTTCATCTT-AC
1 CATTTCAT-TTAAA
*
94933599 CATTTCATTTACA
1 CATTTCATTTAAA
94933612 CATTT
1 CATTT
94933617 AACACATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.48
Consensus pattern (13 bp):
CATTTCATTTAAA
Found at i:94933913 original size:23 final size:23
Alignment explanation
Indices: 94933887--94933954 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 23
94933877 ACATATTAAA
94933887 AAATCATTCTTGATACAATATTC
1 AAATCATTCTTGATACAATATTC
** * **
94933910 AAAT-GGTATACAT-CAATATT-
1 AAATCATTCTTGATACAATATTC
94933930 --ATCATTCTTGATACAATATTC
1 AAATCATTCTTGATACAATATTC
94933951 AAAT
1 AAAT
94933955 GGTATACATC
Statistics
Matches: 30, Mismatches: 10, Indels: 10
0.60 0.20 0.20
Matches are distributed among these distances:
18 2 0.07
19 4 0.13
20 7 0.23
21 7 0.23
22 4 0.13
23 6 0.20
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (23 bp):
AAATCATTCTTGATACAATATTC
Found at i:94933927 original size:21 final size:21
Alignment explanation
Indices: 94933902--94933975 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
94933892 ATTCTTGATA
94933902 CAATATTCAAATGGTATACAT
1 CAATATTCAAATGGTATACAT
* * **
94933923 CAATATT-ATCAT--TCTTGAT
1 CAATATTCA-AATGGTATACAT
94933942 ACAATATTCAAATGGTATACAT
1 -CAATATTCAAATGGTATACAT
94933964 CAATATTTCAAA
1 CAATA-TTCAAA
94933976 ATTAGACACA
Statistics
Matches: 39, Mismatches: 8, Indels: 11
0.67 0.14 0.19
Matches are distributed among these distances:
19 4 0.10
20 10 0.26
21 15 0.38
22 10 0.26
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (21 bp):
CAATATTCAAATGGTATACAT
Found at i:94933946 original size:41 final size:41
Alignment explanation
Indices: 94933889--94933970 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
94933879 ATATTAAAAA
94933889 ATCATTCTTGATACAATATTCAAATGGTATACATCAATATT
1 ATCATTCTTGATACAATATTCAAATGGTATACATCAATATT
94933930 ATCATTCTTGATACAATATTCAAATGGTATACATCAATATT
1 ATCATTCTTGATACAATATTCAAATGGTATACATCAATATT
94933971 TCAAAATTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (41 bp):
ATCATTCTTGATACAATATTCAAATGGTATACATCAATATT
Found at i:94934354 original size:20 final size:19
Alignment explanation
Indices: 94934331--94934375 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
94934321 GGCATCGATA
*
94934331 TGCAATCAAAGGTACCAAAG
1 TGCAAT-AAAGGCACCAAAG
*
94934351 TGCAAATAGAGGCACCAAAG
1 TGC-AATAAAGGCACCAAAG
94934371 TGCAA
1 TGCAA
94934376 ACTCATACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 17 0.77
21 3 0.14
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.13
Consensus pattern (19 bp):
TGCAATAAAGGCACCAAAG
Found at i:94935204 original size:23 final size:23
Alignment explanation
Indices: 94935178--94935224 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
94935168 TTGATTAATG
94935178 GAAAAATCTAAAATCTTTAACAT
1 GAAAAATCTAAAATCTTTAACAT
94935201 GAAAAATCTAAAATCTTTAACAT
1 GAAAAATCTAAAATCTTTAACAT
94935224 G
1 G
94935225 TAACACCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (23 bp):
GAAAAATCTAAAATCTTTAACAT
Found at i:94936836 original size:48 final size:47
Alignment explanation
Indices: 94936769--94936953 Score: 148
Period size: 48 Copynumber: 3.9 Consensus size: 47
94936759 CACATAGTAA
* * * *
94936769 GATGCCAATGCTATATCCCAGATATGGTCTTAAATGGGATCACATAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT
** * **
94936816 CGATGCCAATGCCATGTCCCAGACATAATCTTACATAGGATCATGTAT
1 -GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT
* * * * *
94936864 -AT-CGAA-GCCGATAG-CCTAG-CTATGGTCTTACA-CGAAGTCTCATATT
1 GATGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATGGGA-TCACATA-T
94936910 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
94936954 CATATCCCTA
Statistics
Matches: 103, Mismatches: 23, Indels: 22
0.70 0.16 0.15
Matches are distributed among these distances:
44 6 0.06
45 22 0.21
46 4 0.04
47 3 0.03
48 62 0.60
49 6 0.06
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT
Found at i:94937678 original size:10 final size:11
Alignment explanation
Indices: 94937656--94937680 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94937646 CAAGGATCTC
94937656 AAAAACATAAA
1 AAAAACATAAA
94937667 AAAAACATAAA
1 AAAAACATAAA
94937678 AAA
1 AAA
94937681 CAGGGCTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAACATAAA
Found at i:94939996 original size:42 final size:43
Alignment explanation
Indices: 94939931--94940048 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 43
94939921 GACTTATGAT
* * *
94939931 TTTTGTGTAGGACCACGTCTGGGACGTTGGCATTG-TATTTGA
1 TTTTGTGTAAGACCAAGTTTGGGACGTTGGCATTGATATTTGA
** * *
94939973 TTTTGTGTAAGACCTTGTTTGGGAAG-TGGCATCGATATTTGA
1 TTTTGTGTAAGACCAAGTTTGGGACGTTGGCATTGATATTTGA
*** * *
94940015 TTACATATAAGACCAAGTTTGGGACATTGGCATT
1 TTTTGTGTAAGACCAAGTTTGGGACGTTGGCATT
94940049 TACGAGCTTT
Statistics
Matches: 59, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
41 7 0.12
42 46 0.78
43 6 0.10
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (43 bp):
TTTTGTGTAAGACCAAGTTTGGGACGTTGGCATTGATATTTGA
Found at i:94940814 original size:22 final size:24
Alignment explanation
Indices: 94940789--94940833 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
94940779 GTTTTTGGCT
94940789 TATGGAATG-ACATGA-ATTGGTA
1 TATGGAATGAACATGAGATTGGTA
**
94940811 TATGTTATGAACATGAGATTGGT
1 TATGGAATGAACATGAGATTGGT
94940834 TGATAATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 6 0.32
24 6 0.32
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGAATGAACATGAGATTGGTA
Found at i:94943121 original size:2 final size:2
Alignment explanation
Indices: 94943114--94943149 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
94943104 TTTGTTTATT
94943114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94943150 CGATATAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94943337 original size:2 final size:2
Alignment explanation
Indices: 94943330--94943359 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
94943320 TTGCAACTTT
94943330 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94943360 AACCATCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94947053 original size:27 final size:25
Alignment explanation
Indices: 94947015--94947065 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
94947005 TAAGTAATTT
94947015 ATTTAATACATATAAAATTTAAATATA
1 ATTTAATAC--ATAAAATTTAAATATA
* *
94947042 ATTTAATGCATAATATTTAAATAT
1 ATTTAATACATAAAATTTAAATAT
94947066 GTCTATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 14 0.64
27 8 0.36
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (25 bp):
ATTTAATACATAAAATTTAAATATA
Found at i:94950345 original size:16 final size:18
Alignment explanation
Indices: 94950319--94950361 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
94950309 TATTATAATT
*
94950319 TTTTATTTAAT-TTTTCA
1 TTTTATTTAATCTTTTAA
94950336 TTTT-TTTAATCTTTTAA
1 TTTTATTTAATCTTTTAA
94950353 TTTATATTT
1 TTT-TATTT
94950362 TTTGTCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 12 0.55
18 1 0.05
19 3 0.14
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTATTTAATCTTTTAA
Found at i:94950469 original size:18 final size:18
Alignment explanation
Indices: 94950443--94950495 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
94950433 AAATGAGATA
* *
94950443 TTAATATTTAATTATTTT
1 TTAAAATTTAATAATTTT
94950461 TTAAAATTT-ATAATTTT
1 TTAAAATTTAATAATTTT
* *
94950478 ATAAATTTTAATAATTTT
1 TTAAAATTTAATAATTTT
94950496 AATGATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 14 0.47
18 16 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTAAAATTTAATAATTTT
Found at i:94950482 original size:17 final size:18
Alignment explanation
Indices: 94950448--94950496 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
94950438 AGATATTAAT
* *
94950448 ATTTAATTATTTTTTAAA
1 ATTTAATAATTTTATAAA
94950466 ATTT-ATAATTTTATAAA
1 ATTTAATAATTTTATAAA
*
94950483 TTTTAATAATTTTA
1 ATTTAATAATTTTA
94950497 ATGATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTAATAATTTTATAAA
Found at i:94950489 original size:15 final size:15
Alignment explanation
Indices: 94950459--94950516 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
94950449 TTTAATTATT
94950459 TTTTAAAATTTATAA
1 TTTTAAAATTTATAA
94950474 TTTTATAAATTTTAATAA
1 TTTTA-AAA-TTT-ATAA
* *
94950492 TTTTAATGATTTTAAAA
1 TTTTAA--AATTTATAA
94950509 TTTTAAAA
1 TTTTAAAA
94950517 ATAGTTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
15 6 0.17
16 3 0.09
17 13 0.37
18 12 0.34
19 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
TTTTAAAATTTATAA
Found at i:94950514 original size:8 final size:8
Alignment explanation
Indices: 94950459--94950516 Score: 64
Period size: 9 Copynumber: 7.0 Consensus size: 8
94950449 TTTAATTATT
94950459 TTTTAAAA
1 TTTTAAAA
*
94950467 -TTTATAA
1 TTTTAAAA
94950474 TTTTATAAA
1 TTTTA-AAA
94950483 TTTTAATAA
1 TTTTAA-AA
*
94950492 TTTTAATGA
1 TTTTAA-AA
94950501 TTTTAAAA
1 TTTTAAAA
94950509 TTTTAAAA
1 TTTTAAAA
94950517 ATAGTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
7 6 0.14
8 14 0.33
9 23 0.53
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (8 bp):
TTTTAAAA
Found at i:94950965 original size:20 final size:20
Alignment explanation
Indices: 94950942--94950991 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
94950932 AAATCCAAAT
94950942 TAAAATACTAAAATTCA-TGA
1 TAAAATACTAAAATTCAGT-A
* *
94950962 TAAAATCCTGAAATTCAGTA
1 TAAAATACTAAAATTCAGTA
94950982 TAATAATACT
1 TAA-AATACT
94950992 GATGTGGCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGTA
Found at i:94951951 original size:88 final size:88
Alignment explanation
Indices: 94951802--94951967 Score: 323
Period size: 88 Copynumber: 1.9 Consensus size: 88
94951792 TTAACCGAAA
*
94951802 ACCTTAGACTCTTAAAGTGTATATTTGAAAATTTTAATAGCACTTCATTAAATTCAAAATGTGAT
1 ACCTTAGACTCTTAAAGTGTATACTTGAAAATTTTAATAGCACTTCATTAAATTCAAAATGTGAT
94951867 CATGCAAGGATCTATGACTGAGT
66 CATGCAAGGATCTATGACTGAGT
94951890 ACCTTAGACTCTTAAAGTGTATACTTGAAAATTTTAATAGCACTTCATTAAATTCAAAATGTGAT
1 ACCTTAGACTCTTAAAGTGTATACTTGAAAATTTTAATAGCACTTCATTAAATTCAAAATGTGAT
94951955 CATGCAAGGATCT
66 CATGCAAGGATCT
94951968 GAGTTTCTTT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (88 bp):
ACCTTAGACTCTTAAAGTGTATACTTGAAAATTTTAATAGCACTTCATTAAATTCAAAATGTGAT
CATGCAAGGATCTATGACTGAGT
Found at i:94953051 original size:14 final size:13
Alignment explanation
Indices: 94953004--94953056 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
94952994 TTCATAATGA
94953004 TTAATTAATTTAAT
1 TTAATT-ATTTAAT
* * *
94953018 TTATTTTTTTATT
1 TTAATTATTTAAT
94953031 TTAATTATTTAAT
1 TTAATTATTTAAT
*
94953044 TATAATTAGTTAA
1 T-TAATTATTTAA
94953057 ATAATAATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
13 16 0.52
14 15 0.48
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTAATTATTTAAT
Found at i:94967732 original size:40 final size:40
Alignment explanation
Indices: 94967668--94967743 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
94967658 ACTATGTTTG
* *
94967668 GCACTTAGTGTGCATTTCAAAATAGCTTCGGCTATAAATA
1 GCACTTAGTGTGCAATTCAAAATAGCTTCGACTATAAATA
*
94967708 GCACTTAGTGTGCGAATT-AGAATAGCTTCGACTATA
1 GCACTTAGTGTGC-AATTCAAAATAGCTTCGACTATA
94967744 TGAGGCACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCAATTCAAAATAGCTTCGACTATAAATA
Found at i:94975239 original size:40 final size:40
Alignment explanation
Indices: 94975164--94975239 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
94975154 ACTATGTTTG
* * *
94975164 GCACTTAGTGTGCATTTCAAAATAGCTTTGGCTATAAATA
1 GCACTTAGTGTGCAATTCAAAATAGCTTCGACTATAAATA
*
94975204 GCACTTAGTGTGCGAATT-AGAATAGCTTCGACTATA
1 GCACTTAGTGTGC-AATTCAAAATAGCTTCGACTATA
94975240 TGAGGCACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.90
41 3 0.10
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCAATTCAAAATAGCTTCGACTATAAATA
Found at i:94978399 original size:19 final size:19
Alignment explanation
Indices: 94978352--94978399 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
94978342 TATTTTAATT
*
94978352 TTTCAAATTTTAAATATGG
1 TTTCAAATTTTAAATATGA
*
94978371 TTGC-AATTTTAAATAT-A
1 TTTCAAATTTTAAATATGA
94978388 TATTCAAATTTT
1 T-TTCAAATTTT
94978400 TAACAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 9 0.38
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (19 bp):
TTTCAAATTTTAAATATGA
Found at i:94982523 original size:24 final size:25
Alignment explanation
Indices: 94982491--94982554 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
94982481 CCAAGCCAAA
*
94982491 TAACAGAAAGCTCATGTAAGCTT-G
1 TAACAGAAAGCTCATCTAAGCTTAG
** *
94982515 TAACAGAAAGCTTTTCTAGGCTTAG
1 TAACAGAAAGCTCATCTAAGCTTAG
*
94982540 TAACAGGAAGCTCAT
1 TAACAGAAAGCTCAT
94982555 AAGAGCTCAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 19 0.59
25 13 0.41
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (25 bp):
TAACAGAAAGCTCATCTAAGCTTAG
Found at i:94983176 original size:5 final size:5
Alignment explanation
Indices: 94983161--94983193 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
94983151 TTTAACACAT
94983161 TTCATA TTCAA TTCAA TTCAA TTCAA TTCAA TT
1 TTCA-A TTCAA TTCAA TTCAA TTCAA TTCAA TT
94983194 TACATCCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (5 bp):
TTCAA
Found at i:94987072 original size:28 final size:29
Alignment explanation
Indices: 94987032--94987088 Score: 107
Period size: 28 Copynumber: 2.0 Consensus size: 29
94987022 TCCCCATCCC
94987032 ACAAATGTTCCCCCTTTTGAAAA-ACTAA
1 ACAAATGTTCCCCCTTTTGAAAAGACTAA
94987060 ACAAATGTTCCCCCTTTTGAAAAGACTAA
1 ACAAATGTTCCCCCTTTTGAAAAGACTAA
94987089 CTTCTGGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.28
Consensus pattern (29 bp):
ACAAATGTTCCCCCTTTTGAAAAGACTAA
Found at i:94988022 original size:23 final size:23
Alignment explanation
Indices: 94987996--94988052 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
94987986 ATTTGACCAT
94987996 ATTTCATA-ACCCAATTGGCAACC
1 ATTTCATATA-CCAATTGGCAACC
94988019 ATTTCATATACCAATTGGCAACC
1 ATTTCATATACCAATTGGCAACC
94988042 ATTTCATATAC
1 ATTTCATATAC
94988053 AATATGTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (23 bp):
ATTTCATATACCAATTGGCAACC
Found at i:94990334 original size:45 final size:44
Alignment explanation
Indices: 94990231--94990449 Score: 300
Period size: 45 Copynumber: 4.9 Consensus size: 44
94990221 CCAAATTCAT
* * * * *
94990231 TCACCGGCATT-TCGCCTGTTAGGCTCGAGGCCCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAAT-ATC
*
94990273 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAATATC
*
94990318 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAATATC
94990363 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAATATC
*
94990408 TCACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAAT
94990450 CAAATCAACA
Statistics
Matches: 160, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
42 11 0.07
43 13 0.08
44 12 0.08
45 120 0.75
46 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAATATC
Found at i:94990374 original size:90 final size:90
Alignment explanation
Indices: 94990231--94990451 Score: 333
Period size: 90 Copynumber: 2.5 Consensus size: 90
94990221 CCAAATTCAT
* * * *
94990231 TCACCGGCATTTCGCCTGTTAGGCTC-GAGGCCCG-AT-ATCATTTCACCGGCATTATAGCCTGC
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAATCATCTCACCGGCATTATAGCCTGC
* *
94990293 TAGGCTCGAAAGCCCGAATAGTATC
66 TAGGCTCAAAAGCCCGAATAATATC
94990318 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATCTCACCGGCATTATAGCCTG
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCGAATAATCATCTCACCGGCATTATAGCCTG
94990382 CTAGGCTCAAAAGCCCGAATAATATC
65 CTAGGCTCAAAAGCCCGAATAATATC
*
94990408 TCACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAATCA
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCGAATAATCA
94990452 AATCAACAAG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
87 11 0.09
88 13 0.11
89 7 0.06
90 87 0.72
91 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (90 bp):
TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAATCATCTCACCGGCATTATAGCCTGC
TAGGCTCAAAAGCCCGAATAATATC
Found at i:94992599 original size:13 final size:13
Alignment explanation
Indices: 94992576--94992615 Score: 71
Period size: 13 Copynumber: 3.0 Consensus size: 13
94992566 GGCACGAAAT
94992576 ATTCACACATACAA
1 ATTC-CACATACAA
94992590 ATTCCACATACAA
1 ATTCCACATACAA
94992603 ATTCCACATACAA
1 ATTCCACATACAA
94992616 TAAGCACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (13 bp):
ATTCCACATACAA
Found at i:94993102 original size:25 final size:24
Alignment explanation
Indices: 94993071--94993163 Score: 93
Period size: 24 Copynumber: 3.9 Consensus size: 24
94993061 AAGCTCCTCC
94993071 TGAGCTGATAAATAGTAAGCTCTAT
1 TGAGCTGA-AAATAGTAAGCTCTAT
94993096 TGAGCTGAAAATAGTAAGCTCTAT
1 TGAGCTGAAAATAGTAAGCTCTAT
** * * *
94993120 CAAGCTG--AATCGGTAAGCTCCAA
1 TGAGCTGAAAAT-AGTAAGCTCTAT
*
94993143 TGAGCTG-AAACAGTAAGCTCT
1 TGAGCTGAAAATAGTAAGCTCT
94993164 TACGAGCTGT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
22 3 0.05
23 22 0.39
24 23 0.41
25 8 0.14
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (24 bp):
TGAGCTGAAAATAGTAAGCTCTAT
Found at i:94993170 original size:23 final size:23
Alignment explanation
Indices: 94993084--94993172 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
94993074 GCTGATAAAT
* *
94993084 AGTAAGCTCTATTGAGCTGAAAAT
1 AGTAAGCTCTATCGAGCTG-AAAC
* *
94993108 AGTAAGCTCTATCAAGCTGAATC
1 AGTAAGCTCTATCGAGCTGAAAC
* *
94993131 GGTAAGCTCCAAT-GAGCTGAAAC
1 AGTAAGCT-CTATCGAGCTGAAAC
94993154 AGTAAGCTCT-TACGAGCTG
1 AGTAAGCTCTAT-CGAGCTG
94993173 TGGTGAGTCT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
21 1 0.02
22 1 0.02
23 30 0.58
24 20 0.38
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCTATCGAGCTGAAAC
Found at i:94993295 original size:34 final size:34
Alignment explanation
Indices: 94993257--94993328 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
94993247 TTCACATAGT
94993257 TCAAACGAGGCTCGGTAACGAATACAACATATCA
1 TCAAACGAGGCTCGGTAACGAATACAACATATCA
94993291 TCAAACGAGGCTCGGTAACGAATACAACATATCA
1 TCAAACGAGGCTCGGTAACGAATACAACATATCA
94993325 TCAA
1 TCAA
94993329 GGCATTCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.42, C:0.24, G:0.17, T:0.18
Consensus pattern (34 bp):
TCAAACGAGGCTCGGTAACGAATACAACATATCA
Found at i:94993838 original size:21 final size:21
Alignment explanation
Indices: 94993799--94993840 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
94993789 AAACTTGTAT
*
94993799 ATCTATCATTAAACCTTTAAA
1 ATCTATCATTAAACATTTAAA
* *
94993820 ATCTATCGTTAAATATTTAAA
1 ATCTATCATTAAACATTTAAA
94993841 TGCTCAAGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.40
Consensus pattern (21 bp):
ATCTATCATTAAACATTTAAA
Found at i:95011097 original size:15 final size:17
Alignment explanation
Indices: 95011079--95011113 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
95011069 TTTGTGTTTT
95011079 TTTAAAAA-A-AATTCA
1 TTTAAAAATATAATTCA
95011094 TTTAAAAATATAATTCA
1 TTTAAAAATATAATTCA
95011111 TTT
1 TTT
95011114 CACATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
16 1 0.06
17 9 0.50
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTAAAAATATAATTCA
Found at i:95012007 original size:28 final size:28
Alignment explanation
Indices: 95011953--95012008 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
95011943 TATTATTTAC
* * * *
95011953 TTACTTTTTTCTTTTTCTTTTTCTATTT
1 TTACTTTTTACTTTTTCTATATATATTT
95011981 TTACTTTTTACTTTTTCTATATATATTT
1 TTACTTTTTACTTTTTCTATATATATTT
95012009 AATTGAGCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.73
Consensus pattern (28 bp):
TTACTTTTTACTTTTTCTATATATATTT
Found at i:95026366 original size:68 final size:67
Alignment explanation
Indices: 95026294--95026443 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
95026284 CATCATGTGT
* * * *
95026294 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
95026356 ATGTAG
62 ATGTAG
** * *
95026362 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
95026427 AG
66 AG
95026429 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
95026444 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:95026399 original size:64 final size:64
Alignment explanation
Indices: 95026318--95026501 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
95026308 AGACATTATG
* *
95026318 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
95026382 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
95026447 AA
63 AA
* * * *
95026449 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
95026502 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:95029686 original size:8 final size:8
Alignment explanation
Indices: 95029673--95029697 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
95029663 ATATCTTTTC
95029673 ATTTTTAT
1 ATTTTTAT
95029681 ATTTTTAT
1 ATTTTTAT
95029689 ATTTTTAT
1 ATTTTTAT
95029697 A
1 A
95029698 ATTCAAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
ATTTTTAT
Found at i:95030205 original size:3 final size:3
Alignment explanation
Indices: 95030199--95030307 Score: 218
Period size: 3 Copynumber: 36.3 Consensus size: 3
95030189 TAATAATAAT
95030199 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
95030247 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
95030295 GAG GAG GAG GAG G
1 GAG GAG GAG GAG G
95030308 GAGAAATCCA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 106 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:95030654 original size:3 final size:3
Alignment explanation
Indices: 95030646--95030696 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
95030636 ATCACTCCCT
95030646 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95030694 ATA
1 ATA
95030697 TGCTTTAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:95033250 original size:21 final size:22
Alignment explanation
Indices: 95033225--95033265 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
95033215 AACCCACCTC
95033225 GATGCAATGC-AATATACAAAA
1 GATGCAATGCTAATATACAAAA
* *
95033246 GATGCCATGCTATTATACAA
1 GATGCAATGCTAATATACAA
95033266 TTACAGTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (22 bp):
GATGCAATGCTAATATACAAAA
Found at i:95035320 original size:46 final size:46
Alignment explanation
Indices: 95035183--95035351 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 46
95035173 ATTCATGTGT
* * * * * *
95035183 GAGCTAGTGTATGATATGTCTGGGACATGTATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA-GACGA
* * * *
95035229 GAGCCAGTATAAGACCATGTCTGGTACATGGTATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GTATCGGCCTCGAGACGA
* *
95035277 GGGCTAGTGTAAGACATGTCTGGGACAT-TCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGT-ATCGGCCTCGAGACG-A
*
95035324 -AGCCAGTGTAAAACATGTCTGGGACATG
1 GAGCCAGTGTAAGACATGTCTGGGACATG
95035352 CGTTGGCTAC
Statistics
Matches: 98, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 48 0.49
47 26 0.27
48 22 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGACGA
Found at i:95035723 original size:15 final size:15
Alignment explanation
Indices: 95035703--95035756 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
95035693 TTTGTTTTAT
95035703 ACTTACTTATATGCA
1 ACTTACTTATATGCA
* * *
95035718 ACTTACTAAGATGTTA
1 ACTTACTTATATG-CA
95035734 TACTTACTTATATGCA
1 -ACTTACTTATATGCA
95035750 ACTTACT
1 ACTTACT
95035757 AAGATGTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 18 0.58
16 2 0.06
17 11 0.35
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (15 bp):
ACTTACTTATATGCA
Found at i:95035735 original size:32 final size:32
Alignment explanation
Indices: 95035699--95035773 Score: 150
Period size: 32 Copynumber: 2.3 Consensus size: 32
95035689 AATTTTTGTT
95035699 TTATACTTACTTATATGCAACTTACTAAGATG
1 TTATACTTACTTATATGCAACTTACTAAGATG
95035731 TTATACTTACTTATATGCAACTTACTAAGATG
1 TTATACTTACTTATATGCAACTTACTAAGATG
95035763 TTATACTTACT
1 TTATACTTACT
95035774 CCCTTCCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (32 bp):
TTATACTTACTTATATGCAACTTACTAAGATG
Found at i:95035740 original size:17 final size:17
Alignment explanation
Indices: 95035718--95035773 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
95035708 CTTATATGCA
95035718 ACTTACTAAGATGTTAT
1 ACTTACTAAGATGTTAT
* * *
95035735 ACTTACTTATATG-CA-
1 ACTTACTAAGATGTTAT
95035750 ACTTACTAAGATGTTAT
1 ACTTACTAAGATGTTAT
95035767 ACTTACT
1 ACTTACT
95035774 CCCTTCCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 11 0.35
16 2 0.06
17 18 0.58
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (17 bp):
ACTTACTAAGATGTTAT
Found at i:95038049 original size:19 final size:19
Alignment explanation
Indices: 95038004--95038041 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
95037994 CTGGCTATTT
95038004 GAGCTTACTAAGCATGTAA
1 GAGCTTACTAAGCATGTAA
95038023 GAGCTTACTAAGCATGTAA
1 GAGCTTACTAAGCATGTAA
95038042 ATGCTTACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (19 bp):
GAGCTTACTAAGCATGTAA
Found at i:95039581 original size:21 final size:22
Alignment explanation
Indices: 95039543--95039583 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
95039533 TTGGAATGCT
95039543 CACACGGACGTGGTGCCCCTCC
1 CACACGGACGTGGTGCCCCTCC
*
95039565 CACACGGGCGT-GTGCCCCT
1 CACACGGACGTGGTGCCCCT
95039584 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.12, C:0.44, G:0.29, T:0.15
Consensus pattern (22 bp):
CACACGGACGTGGTGCCCCTCC
Found at i:95055442 original size:94 final size:93
Alignment explanation
Indices: 95055276--95055457 Score: 231
Period size: 94 Copynumber: 1.9 Consensus size: 93
95055266 TCGTGTGTGA
* *
95055276 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCCACATGATGAGAGCCAATATAAGACCATGTC
* *
95055341 TGGGACATGGCATCGGCATTGAGACGAGG
66 TGAGACATGGCATCGAC-TTGAGACGAGG
* * * * ** * *
95055370 GCTAGTGTGAGACATGTTTGGGATATGCATCGGCTGCGA-GATGATAGCCAGTATAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCCAC-ATGATGAGAGCCAATATAAGACCATGT
95055434 CTGAGACATGGCATCGACTTGAGA
65 CTGAGACATGGCATCGACTTGAGA
95055458 TATGAGCCAA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
93 6 0.08
94 68 0.91
95 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCACCGGCCACATGATGAGAGCCAATATAAGACCATGTC
TGAGACATGGCATCGACTTGAGACGAGG
Found at i:95055458 original size:47 final size:47
Alignment explanation
Indices: 95055316--95055498 Score: 158
Period size: 47 Copynumber: 3.9 Consensus size: 47
95055306 CGGCCACATT
* * *
95055316 ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
1 ATGATAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGC-TTGAG
* ** * * * * * *
95055364 ACGAGGGCTAGTGTGAGA-CATGTTTGGGATAT-GCATCGGCTGCGAG
1 ATGATAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGCT-TGAG
* *
95055410 ATGATAGCCAGTATAAGACCATGTCTGAGACATGGCATCGACTTGAG
1 ATGATAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGCTTGAG
* *
95055457 AT-ATGAGCCAATGTAAGACCGTGTCT-AGGACATGGCATCGGC
1 ATGAT-AGCCAGTGTAAGACCATGTCTGA-GACATGGCATCGGC
95055499 ACCTTACCCT
Statistics
Matches: 107, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 26 0.24
47 59 0.55
48 21 0.20
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (47 bp):
ATGATAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGCTTGAG
Found at i:95069298 original size:28 final size:28
Alignment explanation
Indices: 95069266--95069322 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
95069256 TGGTTTCTCC
95069266 TTAGAATTGATGAATTCGATGCTCCTAA
1 TTAGAATTGATGAATTCGATGCTCCTAA
95069294 TTAGAATTGATGAATTCGATGCTCCTAA
1 TTAGAATTGATGAATTCGATGCTCCTAA
95069322 T
1 T
95069323 CCTTTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (28 bp):
TTAGAATTGATGAATTCGATGCTCCTAA
Found at i:95083697 original size:16 final size:15
Alignment explanation
Indices: 95083658--95083698 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
95083648 AACTTGAGCC
95083658 TTCATTTATTTATAT
1 TTCATTTATTTATAT
95083673 TTCATTT-TATT-TAT
1 TTCATTTAT-TTATAT
95083687 TT-ATTTATTTAT
1 TTCATTTATTTAT
95083699 GTACAAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 6 0.26
14 8 0.35
15 9 0.39
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTCATTTATTTATAT
Found at i:95091834 original size:43 final size:43
Alignment explanation
Indices: 95091770--95091925 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
95091760 TGCTCATACA
* * * * *
95091770 ATGCCATA-TCCCAGATATGGTCTTACATGTTAA-CATATAATG
1 ATGCCAAAGTCCCAGACATGGTCTTACACG-AAATCATATAACG
*
95091812 ATGCCAAAGTCCCAGACGTGGTCTTACACGAAATCATATAACG
1 ATGCCAAAGTCCCAGACATGGTCTTACACGAAATCATATAACG
* * * *
95091855 ATGCCAATGTCGCAGACATGGTCTTACACGTAAA-CACA-ATACA
1 ATGCCAAAGTCCCAGACATGGTCTTACACG-AAATCATATA-ACG
*
95091898 ATG-AAAATGTCCCAGACATGGTCTTACA
1 ATGCCAAA-GTCCCAGACATGGTCTTACA
95091926 TGTAATCTCA
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 12 0.13
43 80 0.84
44 3 0.03
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAAAGTCCCAGACATGGTCTTACACGAAATCATATAACG
Found at i:95094375 original size:17 final size:18
Alignment explanation
Indices: 95094349--95094382 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95094339 TCTTCTCCTC
*
95094349 TTGGGCTTA-TTTGGGTG
1 TTGGGATTATTTTGGGTG
95094366 TTGGGATTATTTTGGGT
1 TTGGGATTATTTTGGGT
95094383 TTATTGTGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.09, C:0.03, G:0.38, T:0.50
Consensus pattern (18 bp):
TTGGGATTATTTTGGGTG
Found at i:95096761 original size:46 final size:44
Alignment explanation
Indices: 95096711--95096829 Score: 132
Period size: 46 Copynumber: 2.6 Consensus size: 44
95096701 CGACTGCTAG
*
95096711 TGTAAGACATGTCTGGGACATGCATTGACCT-CGAGACGTAAGACAA
1 TGTAAGACATGTCTGGGACATGCATCGA-CTGCGAGACGT--GACAA
* * * *
95096757 TGTAAGACATGTATGGGACATGCATCGACTGCGAGATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGACTGCGAGACGTGACAA
*
95096801 TGTAAGACCTTGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
95096830 GCACGATTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 10 0.16
45 14 0.22
46 39 0.62
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGACTGCGAGACGTGACAA
Found at i:95098867 original size:46 final size:45
Alignment explanation
Indices: 95098701--95098867 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
95098691 TAGCCGGTGA
**
95098701 ATGTCTCAGACATGTCTTACACTAGCT-TACATCTCGAGGCTAATGC
1 ATGTCTCAGACATGTCTTACACTAGCTCT-CATCTC-AGGCCGATGC
* * *
95098747 ATGTCCCAGACATGTCTTATACTAG-ACTCATCTCAGTGCCGATGCC
1 ATGTCTCAGACATGTCTTACACTAGCTCTCATCTCAG-GCCGATG-C
* * *
95098793 ATGTGC-CACACATGGTCTTACACAAGCTCTCATAAT-ATGGCCGATGC
1 ATGT-CTCAGACAT-GTCTTACACTAGCTCTCAT-CTCA-GGCCGATGC
95098840 ATGTCTCAGACATGTCTTACACTAGCTC
1 ATGTCTCAGACATGTCTTACACTAGCTC
95098868 ACAATAACCC
Statistics
Matches: 100, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
44 2 0.02
45 11 0.11
46 50 0.50
47 22 0.22
48 13 0.13
49 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
ATGTCTCAGACATGTCTTACACTAGCTCTCATCTCAGGCCGATGC
Found at i:95107839 original size:48 final size:48
Alignment explanation
Indices: 95107716--95107889 Score: 216
Period size: 48 Copynumber: 3.8 Consensus size: 48
95107706 TATGTGACGT
* ** * * *
95107716 CATGTAAGACCATGTCTACGACATGGCATTGCCATCGTTATGTGATCC
1 CATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCC
* * *
95107764 CATGTAATACCATGTCTGGG--A---CA-TGGCATTGATATGTGATCC
1 CATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCC
*
95107806 TATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCC
1 CATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCC
95107854 CATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 CATGTAAGACCATATCTGGGATATGGCATTGGCATC
95107890 TTACTTTGTG
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
42 33 0.30
43 2 0.02
44 1 0.01
46 1 0.01
47 2 0.02
48 70 0.64
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (48 bp):
CATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCC
Found at i:95107859 original size:90 final size:90
Alignment explanation
Indices: 95107717--95107884 Score: 255
Period size: 90 Copynumber: 1.9 Consensus size: 90
95107707 ATGTGACGTC
* * * *
95107717 ATGTAAGACCATGTCTACGACATGGCATTGCCATCGTTATGTGATCCCATGTAATACCATGTCTG
1 ATGTAAGACCATATCTACGACATGGCATTGCCATCGATATGTGATCCCATGTAAGACCATATCTG
95107782 GGACATGGCATTGATATGTGATCCT
66 GGACATGGCATTGATATGTGATCCT
** * *
95107807 ATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTG
1 ATGTAAGACCATATCTACGACATGGCATTGCCATCGATATGTGATCCCATGTAAGACCATATCTG
*
95107872 GGATATGGCATTG
66 GGACATGGCATTG
95107885 GCATCTTACT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 69 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (90 bp):
ATGTAAGACCATATCTACGACATGGCATTGCCATCGATATGTGATCCCATGTAAGACCATATCTG
GGACATGGCATTGATATGTGATCCT
Found at i:95113475 original size:45 final size:45
Alignment explanation
Indices: 95113424--95113515 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
95113414 TGACGGAATG
95113424 AAAAGAATGCTTAAAATGTGTTATAAACAAATTATATGTTAAACT
1 AAAAGAATGCTTAAAATGTGTTATAAACAAATTATATGTTAAACT
95113469 AAAAGAATGCTTAAAATGTGTTATAAACAAATTATATGTTAAACT
1 AAAAGAATGCTTAAAATGTGTTATAAACAAATTATATGTTAAACT
95113514 AA
1 AA
95113516 GGTTTGCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.33
Consensus pattern (45 bp):
AAAAGAATGCTTAAAATGTGTTATAAACAAATTATATGTTAAACT
Found at i:95114774 original size:39 final size:39
Alignment explanation
Indices: 95114731--95115026 Score: 441
Period size: 39 Copynumber: 7.5 Consensus size: 39
95114721 TAATGGAGAA
*
95114731 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTTGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
95114770 TTATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
**
95114809 TTATATCCGGGCTAAGTCCTAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
95114848 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
95114887 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
95114926 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
95114965 TTATATCCGGGCTAAAGTCCTGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
95115004 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
95115027 CATGCTTTGT
Statistics
Matches: 236, Mismatches: 19, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 217 0.92
40 19 0.08
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:95119715 original size:11 final size:11
Alignment explanation
Indices: 95119695--95119724 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
95119685 AGAACTAGGA
*
95119695 TTAATCATATT
1 TTAATTATATT
95119706 TTAATTATATT
1 TTAATTATATT
95119717 TTAATTAT
1 TTAATTAT
95119725 TAAGTGTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TTAATTATATT
Found at i:95121278 original size:17 final size:19
Alignment explanation
Indices: 95121238--95121279 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
95121228 TTAATAATGT
*
95121238 ATAAA-TATATATATATAT
1 ATAAATTATATATATATAC
95121256 ATAAATTATATATATA-AC
1 ATAAATTATATATATATAC
95121274 A-AAATT
1 ATAAATT
95121280 TTAAATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 5 0.23
18 7 0.32
19 10 0.45
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAAATTATATATATATAC
Found at i:95123592 original size:14 final size:14
Alignment explanation
Indices: 95123573--95123599 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95123563 TTGGACCTAA
95123573 TTATTTTTGTTTTT
1 TTATTTTTGTTTTT
95123587 TTATTTTTGTTTT
1 TTATTTTTGTTTT
95123600 ATTTTGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (14 bp):
TTATTTTTGTTTTT
Done.