Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 326 of 427
Found at i:95129013 original size:35 final size:35
Alignment explanation
Indices: 95128966--95129036 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
95128956 AGATAGATTA
* *
95128966 ATATTCAGGCCTGGGCTCATGTAAGATGCAGATAC
1 ATATTCAGGCCTGAGCCCATGTAAGATGCAGATAC
* * *
95129001 ATATTC-GAGCCTGAGCCCATTTCAGATGTAGATAC
1 ATATTCAG-GCCTGAGCCCATGTAAGATGCAGATAC
95129036 A
1 A
95129037 GTTATAGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 1 0.03
35 29 0.97
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (35 bp):
ATATTCAGGCCTGAGCCCATGTAAGATGCAGATAC
Found at i:95130910 original size:47 final size:45
Alignment explanation
Indices: 95130839--95131061 Score: 173
Period size: 48 Copynumber: 4.7 Consensus size: 45
95130829 TGATTTGTGC
**
95130839 GCCAGTGTAAGACATGTCTAGGACATGTTTCGGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCATA-TATGAGA
* * *
95130885 GCCAGTGTAAGACCATGTCTAGGACATAGCATCGG-CATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCAT--ATATGAGA
* * * *
95130933 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCATA-TATGAGA
* * * *
95130979 GCCAGTGTAAGACCATGTCT-GGAACATGGCATTGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTAGG-ACAT-GCATCGGC-CATATATGAGA
* *
95131027 GCCAGTGCAAGACCATGCCT-GAGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTAG-GACAT-GCATCGG
95131062 TAATATATCC
Statistics
Matches: 144, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 34 0.24
47 44 0.31
48 60 0.42
49 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCATATATGAGA
Found at i:95130989 original size:46 final size:46
Alignment explanation
Indices: 95130839--95131006 Score: 171
Period size: 47 Copynumber: 3.6 Consensus size: 46
95130829 TGATTTGTGC
** *
95130839 GCCAGTGTAAGA-CATGTCTAGGACATGTTTCGGCCATATTATGAGA
1 GCCAGTGTAAGACCATGTCTAGGACATGCATC-GCCATACTATGAGA
* * * * *
95130885 GCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATCCAGACGAGG
1 GCCAGTGTAAGACCATGTCTAGGACAT-GCATCGCCATAC-TATGAGA
* * *
95130933 GCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACCATGTCTAGGACATGCATC-GCCATACTATGAGA
95130979 GCCAGTGTAAGACCATGTCT-GGAACATG
1 GCCAGTGTAAGACCATGTCTAGG-ACATG
95131007 GCATTGGCAC
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
46 33 0.33
47 48 0.48
48 18 0.18
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTAGGACATGCATCGCCATACTATGAGA
Found at i:95131039 original size:94 final size:94
Alignment explanation
Indices: 95130839--95131059 Score: 257
Period size: 94 Copynumber: 2.3 Consensus size: 94
95130829 TGATTTGTGC
* ** * *
95130839 GCCAGTGTAAGACATGTCTAGGACATGTTTCGGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
95130904 TAGGACATAGCATCGGCATCCAGACGAGG
66 TAGGACATAGCATCGGCATCCAGACGAGG
* *
95130933 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
* * * * *
95130998 T-GGAACATGGCATTGGCA-CAGAGATGAGT
66 TAGG-ACATAGCATCGGCATC-CAGACGAGG
* * *
95131027 GCCAGTGCAAGACCATGCCTGAGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
95131060 GGTAATATAT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
93 3 0.03
94 87 0.81
95 12 0.11
96 5 0.05
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (94 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
TAGGACATAGCATCGGCATCCAGACGAGG
Found at i:95138218 original size:13 final size:14
Alignment explanation
Indices: 95138202--95138237 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
95138192 CAATCTCATA
95138202 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
95138215 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
95138228 TCTC-ATTTCA
1 TCTCAATTTCA
95138238 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:95138227 original size:18 final size:19
Alignment explanation
Indices: 95138189--95138229 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
95138179 TGGTTCATGT
95138189 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
95138208 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
95138226 TTTC
1 TTTC
95138230 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:95138419 original size:39 final size:38
Alignment explanation
Indices: 95138352--95138486 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
95138342 ACCAATATGG
* * *
95138352 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
95138391 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
95138429 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
95138470 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
95138487 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:95138750 original size:18 final size:19
Alignment explanation
Indices: 95138724--95138762 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
95138714 TTTCAATTCA
95138724 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
95138743 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
95138761 AT
1 AT
95138763 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:95140090 original size:5 final size:5
Alignment explanation
Indices: 95140080--95140132 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
95140070 TTACTTATTT
* *
95140080 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
95140128 ATATA
1 ATATA
95140133 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:95140096 original size:12 final size:12
Alignment explanation
Indices: 95140079--95140134 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
95140069 TTTACTTATT
95140079 TATATAATATAA
1 TATATAATATAA
95140091 TATATAATATAATA
1 TATATAATAT-A-A
95140105 TACTATAATATAA
1 TA-TATAATATAA
*
95140118 TA-ATAATTTAA
1 TATATAATATAA
95140129 TATATA
1 TATATA
95140135 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:95141890 original size:1 final size:1
Alignment explanation
Indices: 95141884--95141918 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
95141874 CATTACTTCA
* *
95141884 TTTTTTTATTTTTTTTTTTTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
95141919 GCATCAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.06, C:0.00, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:95144637 original size:13 final size:14
Alignment explanation
Indices: 95144621--95144656 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
95144611 CAATCTCATA
95144621 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
95144634 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
95144647 TCTC-ATTTCA
1 TCTCAATTTCA
95144657 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:95144646 original size:18 final size:19
Alignment explanation
Indices: 95144608--95144648 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
95144598 TGGTTCATGT
95144608 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
95144627 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
95144645 TTTC
1 TTTC
95144649 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:95144838 original size:39 final size:38
Alignment explanation
Indices: 95144771--95144905 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
95144761 ACCAATATGG
* * *
95144771 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
95144810 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
95144848 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
95144889 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
95144906 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:95145170 original size:18 final size:19
Alignment explanation
Indices: 95145144--95145182 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
95145134 TTTCAATTCA
95145144 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
95145163 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
95145181 AT
1 AT
95145183 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:95146509 original size:5 final size:5
Alignment explanation
Indices: 95146499--95146543 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
95146489 TTACTTATTT
* *
95146499 ATATA ATATA ATATA CTATA ATATA ATAATA ATTTA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA
95146544 TTTTAACACA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
4 4 0.12
5 25 0.74
6 5 0.15
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:95147138 original size:14 final size:14
Alignment explanation
Indices: 95147119--95147157 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
95147109 ATATTTGACT
95147119 TGTTCTTAATTATG
1 TGTTCTTAATTATG
95147133 TGTTCTTAATTATG
1 TGTTCTTAATTATG
95147147 TGTTCTTAATT
1 TGTTCTTAATT
95147158 CTTGTTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:95148159 original size:27 final size:27
Alignment explanation
Indices: 95148111--95148323 Score: 215
Period size: 27 Copynumber: 7.9 Consensus size: 27
95148101 GCGAGGCTGC
* *
95148111 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
95148138 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
95148164 CAGATATATGTGGCAGAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
95148191 CAGATAATTTTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
95148218 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * **
95148245 CAGATAATCGTGGCATAGCCATTAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
95148272 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
95148299 CAGATAATCGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
95148324 GACGCTTCCT
Statistics
Matches: 156, Mismatches: 18, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
26 12 0.08
27 137 0.88
28 7 0.04
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:95148211 original size:54 final size:54
Alignment explanation
Indices: 95148129--95148323 Score: 311
Period size: 54 Copynumber: 3.6 Consensus size: 54
95148119 GTGACGAAGT
* *
95148129 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* **
95148183 CACCAAATCAGATAATTTTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
**
95148237 CACCAGATCAGATAATCGTGGCATAGCCATTAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
95148291 CACCAGATCAGATAATCGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
95148324 GACGCTTCCT
Statistics
Matches: 130, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
53 5 0.04
54 125 0.96
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:95148232 original size:81 final size:81
Alignment explanation
Indices: 95148129--95148323 Score: 238
Period size: 81 Copynumber: 2.4 Consensus size: 81
95148119 GTGACGAAGT
95148129 CACCAGATACAGATAT-TGTGGCAGAGCCACCAGAACAGATATAT-GTGGCAGAGCCACCA-AAT
1 CACCAGA-ACAGATATATGTGGCAGAGCCACCAGAACAGATA-ATCGTGGCAGAGCCACCAGAA-
* *
95148191 CAGATA-ATTTTGGCATAGC
63 CAGATATA-TGTGGCAGAGC
* * **
95148210 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCATTAGAACAG
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATAATCGTGGCAGAGCCACCAGAACAG
95148275 ATATATGTGGCAGAGC
66 ATATATGTGGCAGAGC
* *
95148291 CACCAGATCAGATA-ATCGTGGCATAGCCACCAG
1 CACCAGAACAGATATAT-GTGGCAGAGCCACCAG
95148324 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
80 12 0.12
81 86 0.85
82 3 0.03
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (81 bp):
CACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATAATCGTGGCAGAGCCACCAGAACAG
ATATATGTGGCAGAGC
Found at i:95148500 original size:28 final size:26
Alignment explanation
Indices: 95148429--95148502 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 26
95148419 AAATAAACCC
* *
95148429 TAGGGGTATAATGGTAATTTTACACC
1 TAGGGGTATAATAGTAATTTTACACA
* * *
95148455 TAGGGGTATAACAATAATTTTCCATACA
1 TAGGGGTATAATAGTAATTTT--ACACA
*
95148483 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
95148503 AGCTGCTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 18 0.47
28 20 0.53
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTACACA
Found at i:95149966 original size:26 final size:26
Alignment explanation
Indices: 95149935--95150042 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
95149925 TGAAATGCCC
95149935 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
95149961 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
95149987 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
95150013 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
95150039 ATCA
1 ATCA
95150043 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 4 0.05
26 69 0.91
27 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:95154517 original size:35 final size:35
Alignment explanation
Indices: 95154478--95154556 Score: 95
Period size: 35 Copynumber: 2.3 Consensus size: 35
95154468 ACAAATCAGA
* * *
95154478 CAGATTCATATTCGGGCATGGGCCCATGTCAGATG
1 CAGATACAGATTCGGGCATGAGCCCATGTCAGATG
* * *
95154513 CAGATACAGATTTGGGCCTGAGCCCATTTCAGATG
1 CAGATACAGATTCGGGCATGAGCCCATGTCAGATG
*
95154548 CAGACACAG
1 CAGATACAG
95154557 TTATAGATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (35 bp):
CAGATACAGATTCGGGCATGAGCCCATGTCAGATG
Found at i:95156147 original size:14 final size:14
Alignment explanation
Indices: 95156128--95156156 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95156118 CGCTGAGGTA
95156128 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95156142 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95156156 T
1 T
95156157 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:95156224 original size:88 final size:86
Alignment explanation
Indices: 95156075--95156561 Score: 521
Period size: 88 Copynumber: 5.8 Consensus size: 86
95156065 TTTACCAAAG
*
95156075 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCACACGCTGAGGTATTTTCAATTTCT
95156140 GTTTTTCAATTTCTGTTCGTCAA
65 GTTTTTC-ATTTCTGTTCGTCAA
* *
95156163 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCACACGCTGAGGTATTTTCAATTTCT
95156228 GTTTTTCGATTTCTGTTCGTCAA
65 GTTTTTC-ATTTCTGTTCGTCAA
* ** *
95156251 AATCAACTCATATTGCGAGAGGTGAGTTAAGCCTC-GGGACACGTTGAGGTAATTTT-AATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACACGCTGAGGT-ATTTTCAATTTCT
******
95156314 G---TTCA----T-AAAAAAAA
65 GTTTTTCATTTCTGTTCGTCAA
* *
95156328 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGTTGAGGTAATTTT-AATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACACGCTGAGGT-ATTTTCAATTTCT
******
95156391 G---TTCA--TC--AAAAAAAA
65 GTTTTTCATTTCTGTTCGTCAA
* *
95156406 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCACACGCTGAGGTATTTTCAATTTCT
95156471 GTTTTTCAATTTCTGTTCGTCAA
65 GTTTTTC-ATTTCTGTTCGTCAA
* *
95156494 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGTTGAGGTAATTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTCACACGCTGAGGTATTTTCAATTTCT
95156557 GTTTT
65 GTTTT
95156562 CAAAATTCAA
Statistics
Matches: 354, Mismatches: 29, Indels: 34
0.85 0.07 0.08
Matches are distributed among these distances:
77 67 0.19
78 46 0.13
79 5 0.01
80 18 0.05
82 1 0.00
83 6 0.02
84 1 0.00
86 47 0.13
87 6 0.02
88 155 0.44
89 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (86 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTCACACGCTGAGGTATTTTCAATTTCTG
TTTTTCATTTCTGTTCGTCAA
Found at i:95156342 original size:77 final size:75
Alignment explanation
Indices: 95156249--95156753 Score: 513
Period size: 77 Copynumber: 6.5 Consensus size: 75
95156239 TCTGTTCGTC
* *
95156249 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGACACGTTGAGGTAATTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
**
95156314 GTTCATAAAAAA
66 GTTC-T-TCAAA
95156326 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
*
95156391 GTTCATCAAAAAA
66 GTTCTTC---AAA
* * * *
95156404 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGT-ATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGTTGAGGTAATTTT-AATT
* *
95156468 TCTGTTTTTCAATTTCTGTTCGTC
63 TCTGTTCTTCAA-----------A
* *
95156492 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
95156557 GTT-TTC--A
66 GTTCTTCAAA
* ** * * *
95156564 AAATTCAACTCATATTGCGAGAAATGATTTGAGCCTCAAGACACGTTAAGGT-ATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTT-AATTTC
95156628 TGTT-TTCAAA
65 TGTTCTTCAAA
* * * *
95156638 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTTAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGTTGAGGTAATTTTAATT
95156702 TCTG-TCTTTCAAA
63 TCTGTTC-TTCAAA
* *
95156715 AAAATCAACTCATATTGCGAGAGGTGAATTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
95156754 ATCACACACT
Statistics
Matches: 362, Mismatches: 38, Indels: 55
0.80 0.08 0.12
Matches are distributed among these distances:
71 4 0.01
72 60 0.17
73 1 0.00
74 33 0.09
75 1 0.00
76 17 0.05
77 113 0.31
78 42 0.12
79 5 0.01
80 22 0.06
85 3 0.01
86 20 0.06
87 4 0.01
88 37 0.10
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
GTTCTTCAAA
Found at i:95156478 original size:14 final size:14
Alignment explanation
Indices: 95156459--95156487 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95156449 CGCTGAGGTA
95156459 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95156473 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95156487 T
1 T
95156488 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:95156513 original size:243 final size:234
Alignment explanation
Indices: 95156161--95156713 Score: 811
Period size: 243 Copynumber: 2.3 Consensus size: 234
95156151 TCTGTTCGTC
95156161 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT
* **
95156226 CTGTTTTTCGATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGAC
66 CTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGAC
* **
95156291 ACGTTGAGGTAATTTTAATTTCTGTTCATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 ACGTTGAGGTAATTTCAATTTCTGTT--T---AAAAAAATCAACTCATATTGCGAGAAATGAGTT
* *
95156356 GAGCCTCAGGACACGTTGAGGTAATTTT-AATTTCTGTTCATCAAAAAA
191 GAGCCTCAAGACACGTTAAGGT-ATTTTCAATTTCTGTT-ATC---AAA
95156404 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT
*
95156469 CTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
66 CTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGAC
** * *
95156534 ACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGATTTGAGCC
131 ACGTTGAGGTAATTTCAATTTCTGTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
*
95156599 TCAAGACACGTTAAGGTATTTTCAATTTCTGTTTTCAAA
196 TCAAGACACGTTAAGGTATTTTCAATTTCTGTTATCAAA
* * * * ** *
95156638 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTTAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT
*
95156703 CTGTCTTTCAA
66 CTGTTTTTCAA
95156714 AAAAATCAAC
Statistics
Matches: 287, Mismatches: 22, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
234 71 0.25
237 7 0.02
238 57 0.20
241 1 0.00
243 151 0.53
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (234 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT
CTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGAC
ACGTTGAGGTAATTTCAATTTCTGTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
TCAAGACACGTTAAGGTATTTTCAATTTCTGTTATCAAA
Found at i:95156523 original size:166 final size:149
Alignment explanation
Indices: 95156492--95156773 Score: 317
Period size: 146 Copynumber: 1.9 Consensus size: 149
95156482 TCTGTTCGTC
* *
95156492 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
* ** * * *
95156557 GTT-TTC--AAAATTCAACTCATATTGCGAGAAATGATTTGAGCCTCAAG--ACACGTTAAGGTA
66 GTTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAG-CTC-AGTCACACGCTGAGGTA
95156617 TTTTCAATTTCTGTTTTCAAA
129 TTTTCAATTTCTGTTTTCAAA
* * * *
95156638 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTTAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGTTGAGGTAATTTTAATT
* *
95156702 TCTG-TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCTTCAGATCACACACTGT
63 TCTGTTC-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGC-TCAG-TCACACGCTGA
95156766 GGTATTTT
125 GGTATTTT
95156774 TTCAATTTAT
Statistics
Matches: 111, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
145 1 0.01
146 36 0.32
147 1 0.01
148 22 0.20
149 3 0.03
150 3 0.03
151 32 0.29
153 13 0.12
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (149 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
GTTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCTCAGTCACACGCTGAGGTATT
TTCAATTTCTGTTTTCAAA
Found at i:95156596 original size:72 final size:73
Alignment explanation
Indices: 95156473--95156748 Score: 344
Period size: 72 Copynumber: 3.7 Consensus size: 73
95156463 CAATTTCTGT
*
95156473 TTTTCAATTTCTGTTCGTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTT-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
95156536 GTTGAGGTA
65 GTTGAGGTA
* * ** *
95156545 ATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGATTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
95156609 TTAAGGTA
66 TTGAGGTA
* *
95156617 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTTCAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---A
* *
95156681 CATGCTGAGGTA
62 CACGTTGAGGTA
* *
95156693 TTTTTAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGC
1 TTTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
95156749 TTCAGATCAC
Statistics
Matches: 177, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
71 2 0.01
72 79 0.45
73 1 0.01
74 33 0.19
76 23 0.13
77 39 0.22
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
TTGAGGTA
Found at i:95156851 original size:53 final size:53
Alignment explanation
Indices: 95156782--95156969 Score: 168
Period size: 53 Copynumber: 3.4 Consensus size: 53
95156772 TTTTCAATTT
*
95156782 ATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
1 ATATTGCGAGAAGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
*** **
95156835 ATATTGCGAGAAGTGAGTTGAGCATCGGGGCACGCTGAGGTATTTTTAGTT-TT--AAATTGACT
1 ATATTGCGAGAAGTGAGTT-A--A-----G--C-CT-TTTTATTTTT-GTTGTTCAAAATCAACT
95156897 C
53 C
95156898 ATATTGCGA-AAGGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
1 ATATTGCGAGAA-GTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
95156951 ATATTGCGAGAAGTGAGTT
1 ATATTGCGAGAAGTGAGTT
95156970 GAGCTTCGGG
Statistics
Matches: 106, Mismatches: 11, Indels: 36
0.69 0.07 0.24
Matches are distributed among these distances:
50 3 0.03
51 9 0.08
52 2 0.02
53 43 0.41
54 3 0.03
55 1 0.01
56 1 0.01
60 1 0.01
61 1 0.01
62 3 0.03
63 25 0.24
64 2 0.02
65 9 0.08
66 3 0.03
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (53 bp):
ATATTGCGAGAAGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
Found at i:95157629 original size:35 final size:34
Alignment explanation
Indices: 95157590--95157671 Score: 137
Period size: 35 Copynumber: 2.4 Consensus size: 34
95157580 ACTTGCCTCT
95157590 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
95157624 CTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 -TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
95157659 TCACACACTCCCA
1 TCCCACTCTCCCA
95157672 CCGCACCTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 11 0.24
35 34 0.76
ACGTcount: A:0.20, C:0.51, G:0.10, T:0.20
Consensus pattern (34 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:95158162 original size:18 final size:18
Alignment explanation
Indices: 95158136--95158174 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
95158126 CTCCCTTCTC
*
95158136 TCTCCCTTCTCTCTCCCT
1 TCTCCCTTCCCTCTCCCT
* *
95158154 TCTCTCTTCCCTCTCTCT
1 TCTCCCTTCCCTCTCCCT
95158172 TCT
1 TCT
95158175 TTTTTTTCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (18 bp):
TCTCCCTTCCCTCTCCCT
Found at i:95158173 original size:11 final size:11
Alignment explanation
Indices: 95158126--95158171 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
95158116 CCGGATTCCC
95158126 CTCCCTTCTCT
1 CTCCCTTCTCT
95158137 CTCCCTTCTCT
1 CTCCCTTCTCT
95158148 CTCCCTTCTCT
1 CTCCCTTCTCT
95158159 CTTCCC-TCTCT
1 C-TCCCTTCTCT
95158170 CT
1 CT
95158172 TCTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
10 1 0.03
11 29 0.85
12 4 0.12
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:95158653 original size:3 final size:3
Alignment explanation
Indices: 95158645--95158687 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
95158635 TGCATTTCAA
95158645 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
95158688 GAAATACATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:95158796 original size:3 final size:3
Alignment explanation
Indices: 95158788--95158847 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
95158778 TGTGTTTCAA
95158788 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
95158836 TAT TAT TAT TAT
1 TAT TAT TAT TAT
95158848 ATATCCTTGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:95159121 original size:33 final size:30
Alignment explanation
Indices: 95159063--95159132 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
95159053 TAATATTATG
*
95159063 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
95159093 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
95159126 TATATAT
1 TATATAT
95159133 ATATATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:95163229 original size:12 final size:12
Alignment explanation
Indices: 95163208--95163243 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
95163198 AACATTTTGA
*
95163208 CATTCGTGCATT
1 CATTCATGCATT
95163220 CATTCATGCATT
1 CATTCATGCATT
*
95163232 CATTCATACATT
1 CATTCATGCATT
95163244 GCATATTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:95171548 original size:14 final size:14
Alignment explanation
Indices: 95171529--95171557 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95171519 CGCTGAGGTA
95171529 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95171543 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95171557 T
1 T
95171558 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:95171775 original size:166 final size:166
Alignment explanation
Indices: 95171476--95172035 Score: 915
Period size: 166 Copynumber: 3.4 Consensus size: 166
95171466 TTTACCAAAG
*
95171476 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
* *
95171541 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGACAC
66 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
95171606 GTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAAAA
131 GTTGAGGTAATTTTAATTTCTGTTCATC-AAAAAAAA
95171643 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTT-T
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
95171707 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
95171772 GTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAAA
131 GTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAAA
95171808 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
*
95171873 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
66 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
95171938 GTTGAGGTAATTTCAATTTCTGTT-TTC-----AAA
131 GTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAAA
* ** * * * *
95171968 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTAAGGTATTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC-AGCTCACGCGCTGAGGTATTTTCAATTTC
95172030 TGTTTT
65 TGTTTT
95172036 CAAAAAAATC
Statistics
Matches: 378, Mismatches: 13, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
158 27 0.07
160 34 0.09
161 2 0.01
165 73 0.19
166 180 0.48
167 62 0.16
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (166 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCT
GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAAA
Found at i:95171880 original size:14 final size:14
Alignment explanation
Indices: 95171861--95171889 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95171851 CGCTGAGGTA
95171861 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95171875 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
95171889 T
1 T
95171890 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:95172138 original size:77 final size:74
Alignment explanation
Indices: 95171894--95172141 Score: 349
Period size: 72 Copynumber: 3.3 Consensus size: 74
95171884 TCTGTTCGTC
*
95171894 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
95171959 GTTTTC--A
66 GTTTTCAAA
* ** *
95171966 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
95172031 GTTTTCAAA
66 GTTTTCAAA
* * * *
95172040 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTATTTTCAATT
95172104 TCTGTCTTTCAAA
63 TCTGT-TTTCAAA
*
95172117 AAAATCAACTCATATTACGAGAGGT
1 AAAATCAACTCATATTGCGAGAGGT
95172142 AAATTGAACT
Statistics
Matches: 155, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
72 66 0.43
73 1 0.01
74 34 0.22
76 24 0.15
77 30 0.19
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
GTTTTCAAA
Found at i:95172172 original size:77 final size:76
Alignment explanation
Indices: 95171894--95172175 Score: 243
Period size: 72 Copynumber: 3.8 Consensus size: 76
95171884 TCTGTTCGTC
* * * * * ** *
95171894 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-GACACGTTGAGGTAATTTCAATTT
1 AAAATCAACTCATATTACGAGAGGTAAATTGAACCTCAGATCACACACTGAGGTATTTTCAATTT
95171957 CTGTTTTC--A
66 CTGTTTTCAAA
* * ** * * * * ** *
95171966 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGTTAAGGTATTTTCAATTT
1 AAAATCAACTCATATTACGAGAGGTAAATTGAACCTCAGATCACACACTGAGGTATTTTCAATTT
95172029 CTGTTTTCAAA
66 CTGTTTTCAAA
* * * * * * * **
95172040 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTACGAGAGGTAAATTGAACCTCAGATCACACACTGAGGTATTTTCAATTT
95172105 CTGTCTTTCAAA
66 CTGT-TTTCAAA
* *
95172117 AAAATCAACTCATATTACGAGAGGTAAATTGAACTTCAGATCACACACTGTGGTATTTT
1 AAAATCAACTCATATTACGAGAGGTAAATTGAACCTCAGATCACACACTGAGGTATTTT
95172176 TTCAATTTAT
Statistics
Matches: 179, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
72 66 0.37
74 34 0.19
76 24 0.13
77 55 0.31
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (76 bp):
AAAATCAACTCATATTACGAGAGGTAAATTGAACCTCAGATCACACACTGAGGTATTTTCAATTT
CTGTTTTCAAA
Found at i:95172244 original size:53 final size:53
Alignment explanation
Indices: 95172184--95172371 Score: 168
Period size: 53 Copynumber: 3.4 Consensus size: 53
95172174 TTTTCAATTT
*
95172184 ATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
1 ATATTGCGAGAAGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
*** **
95172237 ATATTGCGAGAAGTGAGTTGAGCATCGGGGCACGCTGAGGTATTTTTAGTT-TT--AAATTGACT
1 ATATTGCGAGAAGTGAGTT-A--A-----G--C-CT-TTTTATTTTT-GTTGTTCAAAATCAACT
95172299 C
53 C
95172300 ATATTGCGA-AAGGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
1 ATATTGCGAGAA-GTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
95172353 ATATTGCGAGAAGTGAGTT
1 ATATTGCGAGAAGTGAGTT
95172372 GAGCTTCGGG
Statistics
Matches: 106, Mismatches: 11, Indels: 36
0.69 0.07 0.24
Matches are distributed among these distances:
50 3 0.03
51 9 0.08
52 2 0.02
53 43 0.41
54 3 0.03
55 1 0.01
56 1 0.01
60 1 0.01
61 1 0.01
62 3 0.03
63 25 0.24
64 2 0.02
65 9 0.08
66 3 0.03
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (53 bp):
ATATTGCGAGAAGTGAGTTAAGCCTTTTTATTTTTGTTGTTCAAAATCAACTC
Found at i:95172670 original size:44 final size:44
Alignment explanation
Indices: 95172581--95172679 Score: 99
Period size: 44 Copynumber: 2.2 Consensus size: 44
95172571 TGAAGCTGTT
** **
95172581 AATCTTATATTTTTGAAGTCACAGTAAAGCAGATCGAAGTTACA
1 AATCTTATATCCTTGAAGTCACAGTAAAGCAGATCGAAGCCACA
* * ** *
95172625 AATCTTATATCCTTGAAGTTACATTAAAGTGGATTGAAGCCACA
1 AATCTTATATCCTTGAAGTCACAGTAAAGCAGATCGAAGCCACA
* *
95172669 AAGCATATATC
1 AATCTTATATC
95172680 AGAAGATGCA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (44 bp):
AATCTTATATCCTTGAAGTCACAGTAAAGCAGATCGAAGCCACA
Found at i:95173031 original size:35 final size:34
Alignment explanation
Indices: 95172992--95173073 Score: 128
Period size: 35 Copynumber: 2.4 Consensus size: 34
95172982 ACTTGTCTCT
95172992 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
*
95173026 CTCCCACTCTCCCATGTTGTCTGCCACCAGCACCA
1 -TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
95173061 TCACACACTCCCA
1 TCCCACTCTCCCA
95173074 CCGCACCTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 11 0.25
35 33 0.75
ACGTcount: A:0.20, C:0.50, G:0.10, T:0.21
Consensus pattern (34 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:95173545 original size:11 final size:11
Alignment explanation
Indices: 95173529--95173563 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
95173519 CCGGATTCCC
95173529 CTCCCTTCTCT
1 CTCCCTTCTCT
95173540 CTCCCTTCTCT
1 CTCCCTTCTCT
95173551 CTTCCC-TCTCT
1 C-TCCCTTCTCT
95173562 CT
1 CT
95173564 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:95174046 original size:3 final size:3
Alignment explanation
Indices: 95174038--95174251 Score: 118
Period size: 3 Copynumber: 69.0 Consensus size: 3
95174028 TGCATTTCAA
95174038 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
95174086 TAT TAT TGT TAT TGA- AAT ACAT TAGT GTAT ATCT TCAT GTAT GTA- TAT
1 TAT TAT TAT TAT T-AT TAT -TAT TA-T -TAT -TAT T-AT -TAT -TAT TAT
* * * * * *
95174134 ATAT ATAT GTAG TAA TGT T-T CTAT TAC T-T TAT T-T TAA TAT TTT TAT
1 -TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
95174180 TAT AAT GGT T-T TGT GT-T TCAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
95174225 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
95174252 ATATCCTTGT
Statistics
Matches: 169, Mismatches: 25, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
2 10 0.06
3 131 0.78
4 25 0.15
5 3 0.02
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:95174525 original size:33 final size:30
Alignment explanation
Indices: 95174467--95174539 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 30
95174457 TAATATTATG
*
95174467 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
95174497 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
95174530 TATATATTTT
1 TATATATTTT
95174540 TTTCTTAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.03
31 9 0.24
32 9 0.24
33 18 0.49
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:95183783 original size:17 final size:17
Alignment explanation
Indices: 95183752--95183790 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
95183742 AAATGGGATG
95183752 AAAATAAATTTTTAATT
1 AAAATAAATTTTTAATT
95183769 AAAA-AAATTTATTAATT
1 AAAATAAATTT-TTAATT
95183786 AAAAT
1 AAAAT
95183791 TTTTAAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAATAAATTTTTAATT
Found at i:95186731 original size:20 final size:19
Alignment explanation
Indices: 95186706--95186753 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
95186696 ATATTTTAGG
95186706 ATTTTTATCATGTTTTTATAT
1 ATTTTTAT-AT-TTTTTATAT
95186727 ATTTTTTATATTTTTTATAT
1 A-TTTTTATATTTTTTATAT
*
95186747 ACTTTTA
1 ATTTTTA
95186754 AAAAGTTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 5 0.20
20 10 0.40
21 3 0.12
22 7 0.28
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (19 bp):
ATTTTTATATTTTTTATAT
Found at i:95196371 original size:12 final size:12
Alignment explanation
Indices: 95196354--95196378 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95196344 TCCTTTTTTA
95196354 GGATAGTTTAAG
1 GGATAGTTTAAG
95196366 GGATAGTTTAAG
1 GGATAGTTTAAG
95196378 G
1 G
95196379 ATTCTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (12 bp):
GGATAGTTTAAG
Found at i:95199357 original size:333 final size:332
Alignment explanation
Indices: 95198706--95199378 Score: 1030
Period size: 333 Copynumber: 2.0 Consensus size: 332
95198696 CTATAGAAGA
* *
95198706 AGTAGTTAAGAATGGTGAGCTAAAGGATTTTGTTGCTCAGCGTACTGATCAGCCAGGGCAGAGTT
1 AGTAGATAAGAATAGTGAGCTAAAGGATTTTGTTGCTCAGCGTACTGATCAGCCAGGGCAGAGTT
* * * * * *
95198771 CAATGACTGAGGCTAAAGGTAAACAAAAGATGGGAGGAACTATTAATGTGATAATTGGGATAGAT
66 CAAGGACTAAGGCTAAAGGTAAACAAAAGATGAGAAGAACTATTAATGTGATAATTAGGACAGAT
* *
95198836 GAAGATTGGGAAACTTTCAATGAGAAGAGAAAGGCTTATTTAGAAGTGTTATGTTTGTTAATTAG
131 GAAGATTGGGAAACTTTCAATGAGAAGAGAAAGGCTCATTTAGAAGGGTTATGTTTGTTAATTAG
* *
95198901 CCAAATAGATTTTGTTAGTAAGAAAAATGAAGGGTGGACTTTAGCAATGAGGATGAACAGTTAAT
196 CCAAAGAGATTTTGTTAGCAAGAAAAATGAAGGGTGGACTTTAGCAATGAGGATGAACAGTTAAT
* *
95198966 TTGTGATGAAGAATGGAATGATCCAATGGTTGTGCCAGCAACTATTGTAGGTTTTGAAGTAAAAA
261 TTGTGATGAAGAAGGGAATGATCCAATGGTTGTACCAGCAACTATTGTAGGTTTTGAAGTAAAAA
*
95199031 GTGTATT
326 GAGTATT
* * *
95199038 GGTAGATAAGAATAGTGAGCTGAAGGATTTTGTTGCTCAGCGTACTGATCAGCCAGGGTAGAGTT
1 AGTAGATAAGAATAGTGAGCTAAAGGATTTTGTTGCTCAGCGTACTGATCAGCCAGGGCAGAGTT
* *
95199103 CAAGGACTAAAGG-TAAAGGTAAACAAAAGGTGAGAAGAACTATTAATGTGGTAATTAGGACAGA
66 CAAGGACT-AAGGCTAAAGGTAAACAAAAGATGAGAAGAACTATTAATGTGATAATTAGGACAGA
*
95199167 TGAAGATTGGGAAAC-TTCTAATGCA-AAGAGAAAGGCTCATCTTAGAAGGGTTATGTTTGTTAG
130 TGAAGATTGGGAAACTTTC-AATG-AGAAGAGAAAGGCTCAT-TTAGAAGGGTTATGTTTGTTAA
* *
95199230 TTCGCCAAAGAGATTTTGTTAGCAAGAAAAATGGTA-GGTGGACTTTAGCAATGAGGATGAACAG
192 TTAGCCAAAGAGATTTTGTTAGCAAGAAAAAT-GAAGGGTGGACTTTAGCAATGAGGATGAACAG
* * * *
95199294 TTAATTTGTGATGAAGAGGGGAATGATCCAATGGTTGTACCGGCAGCTCTTGTAGGTTTTGAAGT
256 TTAATTTGTGATGAAGAAGGGAATGATCCAATGGTTGTACCAGCAACTATTGTAGGTTTTGAAGT
95199359 AAAAAGAGTATT
321 AAAAAGAGTATT
95199371 AGTAGATA
1 AGTAGATA
95199379 GTGACAGTGC
Statistics
Matches: 308, Mismatches: 28, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
331 3 0.01
332 145 0.47
333 158 0.51
334 2 0.01
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (332 bp):
AGTAGATAAGAATAGTGAGCTAAAGGATTTTGTTGCTCAGCGTACTGATCAGCCAGGGCAGAGTT
CAAGGACTAAGGCTAAAGGTAAACAAAAGATGAGAAGAACTATTAATGTGATAATTAGGACAGAT
GAAGATTGGGAAACTTTCAATGAGAAGAGAAAGGCTCATTTAGAAGGGTTATGTTTGTTAATTAG
CCAAAGAGATTTTGTTAGCAAGAAAAATGAAGGGTGGACTTTAGCAATGAGGATGAACAGTTAAT
TTGTGATGAAGAAGGGAATGATCCAATGGTTGTACCAGCAACTATTGTAGGTTTTGAAGTAAAAA
GAGTATT
Found at i:95201653 original size:30 final size:30
Alignment explanation
Indices: 95201617--95201688 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
95201607 AAATTTAAAT
* *
95201617 ATTATAAAAATATT-TAAAAGGTTATTCAAA
1 ATTATAAAAA-ATTATAAAAAGTTAATCAAA
*
95201647 ATTATAAAAAATTATAAAAAGTTAATGAAA
1 ATTATAAAAAATTATAAAAAGTTAATCAAA
*
95201677 ATTCAAAAAAAA
1 ATT-ATAAAAAA
95201689 AAAAGAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 3 0.08
30 26 0.72
31 7 0.19
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (30 bp):
ATTATAAAAAATTATAAAAAGTTAATCAAA
Found at i:95209854 original size:19 final size:20
Alignment explanation
Indices: 95209832--95209875 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
95209822 TAATTATATT
*
95209832 TATTTAATAT-GAATTTAAA
1 TATTTAATATAAAATTTAAA
95209851 TA-TTAATATAAAATTTAAA
1 TATTTAATATAAAATTTAAA
95209870 -ATTTAA
1 TATTTAA
95209876 AATTTTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
TATTTAATATAAAATTTAAA
Found at i:95209896 original size:22 final size:21
Alignment explanation
Indices: 95209871--95209922 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
95209861 AAATTTAAAA
**
95209871 TTTAAAATTTTCTTTATGTATT
1 TTTAAAATTTTCTTTAAAT-TT
*
95209893 TTT-ATATATTTCTTTAAATTT
1 TTTAAAAT-TTTCTTTAAATTT
95209914 TTTAAAATT
1 TTTAAAATT
95209923 AAGATTAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTAAAATTTTCTTTAAATTT
Found at i:95211173 original size:25 final size:25
Alignment explanation
Indices: 95211144--95211214 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
95211134 ATATGTAAAT
*
95211144 GGGAAGCTCTTTCGAGCCATATAAT
1 GGGAAGCTCTTTCGAGCCATATAAC
* * *
95211169 TGGAAGCTCATGT-GAGCCATGTAAC
1 GGGAAGCTC-TTTCGAGCCATATAAC
* *
95211194 GGGAAGCTCATCCGAGCCATA
1 GGGAAGCTCTTTCGAGCCATA
95211215 ATCGAGAAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
25 33 0.94
26 2 0.06
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (25 bp):
GGGAAGCTCTTTCGAGCCATATAAC
Found at i:95211273 original size:26 final size:27
Alignment explanation
Indices: 95211243--95211313 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
95211233 ACCAATATCA
95211243 GGAAGCTCCGAAGAGCCAATT-AATCG
1 GGAAGCTCCGAAGAGCCAATTGAATCG
* *
95211269 GGAAGCTCATGAA-AGACC-CTTGAATCG
1 GGAAGCTC-CGAAGAG-CCAATTGAATCG
*
95211296 GGAAGCTCCGAAGGGCCA
1 GGAAGCTCCGAAGAGCCA
95211314 TGTAACACCC
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
26 17 0.47
27 19 0.53
ACGTcount: A:0.32, C:0.24, G:0.30, T:0.14
Consensus pattern (27 bp):
GGAAGCTCCGAAGAGCCAATTGAATCG
Found at i:95212763 original size:28 final size:27
Alignment explanation
Indices: 95212700--95212769 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
95212690 ATAGTGAGTC
*
95212700 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
95212727 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
95212755 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95212770 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:95221777 original size:46 final size:46
Alignment explanation
Indices: 95221672--95221796 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
95221662 GGTCATTTGT
* * **
95221672 GAGAGCTAGTGTAAGACCATGTCTAAGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCATCAAGAC
* * *
95221720 GAGTGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCTCAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCATCAAGAC
*
95221766 GTA-AGCCAGTGTAAGACATGTCTGGGACATG
1 G-AGAGCCAGTGTAAGACATGTCTGAGACATG
95221797 GCTTCGACTT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 39 0.57
47 14 0.21
48 15 0.22
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCATCAAGAC
Found at i:95221817 original size:46 final size:47
Alignment explanation
Indices: 95221727--95221848 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 47
95221717 GACGAGTGCT
* * *
95221727 AGTGTAAGACATGTCTGAGACAT-GCATCGGCCTCAAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTCAAGACATAAGCC
* ** *
95221773 AGTGTAAGACATGTCTGGGACATGGCTTC-GACTTGAGATATAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTCAAGACATAAGCC
* *
95221819 AGTGTAAGACCGTGTCTGGGGCATGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
95221849 AGCATCTTAC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 43 0.67
47 21 0.33
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGACTCAAGACATAAGCC
Found at i:95224852 original size:68 final size:65
Alignment explanation
Indices: 95224647--95224867 Score: 200
Period size: 67 Copynumber: 3.4 Consensus size: 65
95224637 ATAATTTTGT
* * *
95224647 CTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTAG
1 CTCTCTTGTACACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACCTCTATTCTCGTAG
* ** * * * * * * *
95224710 CTTTCTTGTTTACATGGTGTCCTTCACTTGGAACCACACATGCA-ACCTAGCTACATCTA-TCTC
1 CTCTCTTGTACACATGGTG---TACACATAGTATCACCCATG-AGACCTAGCTACCTCTATTCTC
95224773 GTAG
62 GTAG
*
95224777 CTTTCTTGT-CTACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACCTCATAATGTCTC
1 CTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACCTC-T-AT-TCTC
95224841 GTAG
62 GTAG
*
95224845 CTCTCTTGTACACATGGTATACA
1 CTCTCTTGTACACATGGTGTACA
95224868 TCCCGTATTA
Statistics
Matches: 123, Mismatches: 23, Indels: 19
0.75 0.14 0.12
Matches are distributed among these distances:
63 17 0.14
64 26 0.21
65 1 0.01
66 23 0.19
67 28 0.23
68 27 0.22
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (65 bp):
CTCTCTTGTACACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACCTCTATTCTCGTAG
Found at i:95224889 original size:68 final size:68
Alignment explanation
Indices: 95224769--95224895 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
95224759 GCTACATCTA
* * * *
95224769 TCTCGTAGCTTTCTTGTCTACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACCTCATA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGAGACCTAGCTACCTCATA
95224834 ATG
66 ATG
* * *
95224837 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGAGACCTAGCTAC
95224896 ATACCATCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
68 48 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGAGACCTAGCTACCTCATA
ATG
Found at i:95227413 original size:22 final size:22
Alignment explanation
Indices: 95227387--95227430 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
95227377 AAAAATAACC
**
95227387 AAAATTACTTAAAATTAATTAT
1 AAAATTAAGTAAAATTAATTAT
*
95227409 AAAATTAAGTAAAATTCATTAT
1 AAAATTAAGTAAAATTAATTAT
95227431 GTTCATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATTAAGTAAAATTAATTAT
Found at i:95230372 original size:17 final size:18
Alignment explanation
Indices: 95230345--95230378 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95230335 AATTAAATAT
95230345 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
95230363 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
95230379 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:95230601 original size:16 final size:16
Alignment explanation
Indices: 95230560--95230601 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
95230550 AAAGTTGATA
95230560 ATAATTAATATATATT
1 ATAATTAATATATATT
*
95230576 ATAATGAATATA-ATT
1 ATAATTAATATATATT
95230591 ATATATTAATA
1 ATA-ATTAATA
95230602 ATTATCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:95247575 original size:18 final size:17
Alignment explanation
Indices: 95247552--95247585 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
95247542 TAGCTGTGCC
95247552 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
95247570 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
95247586 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:95248732 original size:25 final size:25
Alignment explanation
Indices: 95248703--95248750 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95248693 TTATAATATG
* * *
95248703 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95248728 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95248751 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95248834 original size:11 final size:11
Alignment explanation
Indices: 95248798--95248853 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
95248788 CATGGTATGT
95248798 ATGATATGCAC
1 ATGATATGCAC
* *
95248809 ATGACATG--T
1 ATGATATGCAC
95248818 ATGATATGCAC
1 ATGATATGCAC
95248829 ATGATATG-A-
1 ATGATATGCAC
*
95248838 ATGACATGCAC
1 ATGATATGCAC
95248849 ATGAT
1 ATGAT
95248854 GTATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95248853 original size:20 final size:20
Alignment explanation
Indices: 95248787--95248853 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
95248777 ATTTTGATAA
*
95248787 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95248807 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
95248827 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
95248847 ACATGAT
1 ACATGAT
95248854 GTATTTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95248929 original size:24 final size:24
Alignment explanation
Indices: 95248902--95249021 Score: 190
Period size: 24 Copynumber: 5.0 Consensus size: 24
95248892 GAGGAAGTGC
95248902 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95248926 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95248950 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95248974 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
95248998 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95249022 ATGATAAAGC
Statistics
Matches: 91, Mismatches: 1, Indels: 7
0.92 0.01 0.07
Matches are distributed among these distances:
23 6 0.07
24 67 0.74
25 18 0.20
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95249271 original size:30 final size:31
Alignment explanation
Indices: 95249211--95249273 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95249201 CGTTTACAGT
95249211 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
95249242 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
95249272 AA
1 AA
95249274 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:95255660 original size:18 final size:17
Alignment explanation
Indices: 95255637--95255670 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
95255627 TAGCTGTGCC
95255637 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
95255655 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
95255671 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:95256817 original size:25 final size:25
Alignment explanation
Indices: 95256788--95256835 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95256778 TTATAATATG
* * *
95256788 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95256813 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95256836 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95256916 original size:11 final size:11
Alignment explanation
Indices: 95256882--95256938 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
95256872 ACATGGTATG
95256882 TATGATATGCA
1 TATGATATGCA
* *
95256893 CATGACATG--
1 TATGATATGCA
95256902 TATGATATGCA
1 TATGATATGCA
95256913 TATGATATG-A
1 TATGATATGCA
*
95256923 -ATGACATGCA
1 TATGATATGCA
*
95256933 CATGAT
1 TATGAT
95256939 GTATTTATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 14 0.39
10 2 0.06
11 20 0.56
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
TATGATATGCA
Found at i:95256938 original size:20 final size:20
Alignment explanation
Indices: 95256872--95256938 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
95256862 ATTTTGATAA
*
95256872 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95256892 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* * *
95256912 ATATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
95256932 ACATGAT
1 ACATGAT
95256939 GTATTTATGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95257014 original size:24 final size:24
Alignment explanation
Indices: 95256987--95257179 Score: 295
Period size: 24 Copynumber: 8.0 Consensus size: 24
95256977 GAGGAAGTGC
95256987 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95257011 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95257035 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95257059 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
95257084 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95257108 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95257131 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
95257156 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95257180 ATGATAAAGC
Statistics
Matches: 159, Mismatches: 1, Indels: 17
0.90 0.01 0.10
Matches are distributed among these distances:
23 39 0.25
24 67 0.42
25 34 0.21
26 19 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95257094 original size:49 final size:48
Alignment explanation
Indices: 95256987--95257179 Score: 295
Period size: 49 Copynumber: 4.0 Consensus size: 48
95256977 GAGGAAGTGC
95256987 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
95257035 AAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTTATGCCCCAGTTATT
95257084 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
95257131 AAAAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 --AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
95257180 ATGATAAAGC
Statistics
Matches: 136, Mismatches: 1, Indels: 14
0.90 0.01 0.09
Matches are distributed among these distances:
46 9 0.07
47 13 0.10
48 37 0.27
49 56 0.41
50 21 0.15
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:95257152 original size:72 final size:73
Alignment explanation
Indices: 95256987--95257179 Score: 336
Period size: 72 Copynumber: 2.6 Consensus size: 73
95256977 GAGGAAGTGC
95256987 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
1 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
95257052 AGTTATTAA
65 AGTTATTAA
95257061 AAAAGGGCTTTGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCA
1 AAAAGGGCTTTGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCA
95257125 GTTATTAA
66 GTTATTAA
*
95257133 AAAAGGGCTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTTGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
95257180 ATGATAAAGC
Statistics
Matches: 116, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
72 58 0.50
73 48 0.41
74 10 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (73 bp):
AAAAGGGCTTTGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCA
GTTATTAA
Found at i:95257406 original size:31 final size:31
Alignment explanation
Indices: 95257371--95257434 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95257361 CGTTTACAGT
95257371 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
95257402 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
95257433 AA
1 AA
95257435 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:95259276 original size:24 final size:24
Alignment explanation
Indices: 95259217--95259301 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
95259207 CACCGGCTCA
** * *
95259217 AAGCCTGATAGAGGATATTGGCAC
1 AAGCCTGATAGATAACATCGGCAC
95259241 AAGGCCTGATAGATAACATCGGCAC
1 AA-GCCTGATAGATAACATCGGCAC
*
95259266 AAGCCTGATAGATAAACATCGACAC
1 AAGCCTGATAGAT-AACATCGGCAC
95259291 AAAGCCTGATA
1 -AAGCCTGATA
95259302 TTTAGTTACA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
24 13 0.25
25 30 0.57
26 10 0.19
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (24 bp):
AAGCCTGATAGATAACATCGGCAC
Found at i:95263069 original size:17 final size:16
Alignment explanation
Indices: 95263008--95263081 Score: 62
Period size: 17 Copynumber: 4.6 Consensus size: 16
95262998 CCGTTTCTCT
*
95263008 TTTCTCTTTTTTTTTTC
1 TTTC-CTTTTTATTTTC
* *
95263025 CTTCC-TTTT-TCTTC
1 TTTCCTTTTTATTTTC
** *
95263039 TTTTGTTCTTATTTTC
1 TTTCCTTTTTATTTTC
95263055 TTTCCTCTTTTATTTTC
1 TTTCCT-TTTTATTTTC
95263072 TTTCCTTTTT
1 TTTCCTTTTT
95263082 CTTACTTCTG
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
14 6 0.14
15 7 0.16
16 13 0.30
17 18 0.41
ACGTcount: A:0.03, C:0.22, G:0.01, T:0.74
Consensus pattern (16 bp):
TTTCCTTTTTATTTTC
Found at i:95263792 original size:63 final size:63
Alignment explanation
Indices: 95263656--95263778 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 63
95263646 ATTCACACCA
* * **
95263656 GCCAAGGACACGGACGTGTGTCCAGGCTGTGTAACACACTGCTTGTACATTGGAACCACATAG
1 GCCAATGACACGGACCTGTGTCCAGGCCATGTAACACACTGCTTGTACATTGGAACCACATAG
* * **
95263719 GCCAATGACACGGGCCTGTGTCTAGGCCATGTAACACACTTTTTGTACATTAGG-ACCACA
1 GCCAATGACACGGACCTGTGTCCAGGCCATGTAACACACTGCTTGTACATT-GGAACCACA
95263779 CGGGTAAGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 49 0.96
64 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (63 bp):
GCCAATGACACGGACCTGTGTCCAGGCCATGTAACACACTGCTTGTACATTGGAACCACATAG
Found at i:95268716 original size:40 final size:40
Alignment explanation
Indices: 95268661--95268778 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 40
95268651 GAAAAAAAAA
95268661 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
95268701 TATAACCGAGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * * *
95268741 TATAATCGGGTTAAGTCTCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
95268779 GTTACATCTG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:95282484 original size:30 final size:29
Alignment explanation
Indices: 95282446--95282503 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
95282436 CCGAGCCTAG
95282446 GGGAAAAACTGTAAATATGCAAAAGTTTA
1 GGGAAAAACTGTAAATATGCAAAAGTTTA
* *
95282475 GGGACAAAACTGTAATTTTGCAAAAGTTT
1 GGGA-AAAACTGTAAATATGCAAAAGTTT
95282504 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (29 bp):
GGGAAAAACTGTAAATATGCAAAAGTTTA
Found at i:95283286 original size:68 final size:66
Alignment explanation
Indices: 95283214--95283385 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
95283204 CATCATGTGT
* * * *
95283214 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
95283277 TGTAG
62 TGTAG
** * *
95283282 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
95283347 AG
65 AG
* * * *
95283349 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
95283386 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:95283319 original size:64 final size:64
Alignment explanation
Indices: 95283238--95283421 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
95283228 AGACATTATG
* * *
95283238 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
95283302 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
95283367 AA
63 AA
* * *
95283369 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
95283422 CAAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:95312931 original size:255 final size:255
Alignment explanation
Indices: 95312471--95312981 Score: 905
Period size: 255 Copynumber: 2.0 Consensus size: 255
95312461 TAGAGAGAAG
* *
95312471 AAATAAATTTCTTCATACTGATTGGATCGTTCTTGTTATGAGGTGTGTGTGTTCTATCTCGTATA
1 AAATAAATTTCTTCATACCGATTGGATCATTCTTGTTATGAGGTGTGTGTGTTCTATCTCGTATA
*
95312536 CGGTAGTTCTTAATGGGGAAATGAGTGTGTGGTTTGAGCCGTCAAGGGGTTTGAGGCAAGGGGAT
66 CGGTAGGTCTTAATGGGGAAATGAGTGTGTGGTTTGAGCCGTCAAGGGGTTTGAGGCAAGGGGAT
* * *
95312601 CCTCTTAGCCCTTATCTCTTTCTAATTTGTGCGGAGGGCTTTTCAATGCTGCTTCATGAAGTCAA
131 CCTCTTAGCCCTTATCTCTTTCTAATTTGTGCGAAAGGCTTTTCAACGCTGCTTCATGAAGTCAA
* * * *
95312666 GCAGAATGACCTTATGCGGGGTGCGCCTATTGGAAGAGGAAAATTCTCTGTCAATCATCT
196 GCAAAATGACCTTATACGGGGTACGCCTATTGGAAGAGGAAAATTCTCCGTCAATCATCT
*
95312726 AAATAAATTTCTTCATACCGATTGGATCATTCTTGTTATGAGGTGTGTGTGTTCTGTCTCGTATA
1 AAATAAATTTCTTCATACCGATTGGATCATTCTTGTTATGAGGTGTGTGTGTTCTATCTCGTATA
*
95312791 TGGTAGGTCTTAATGGGGAAATGAGTGTGTGGTTTGAGCCGTCAAGGGGTTTGAGGCAAGGGGAT
66 CGGTAGGTCTTAATGGGGAAATGAGTGTGTGGTTTGAGCCGTCAAGGGGTTTGAGGCAAGGGGAT
*
95312856 CCTCTTAGCCCTTATCTCTTTCTAATTTGTGCGAAAGGCTTTTCAACGCTGCTTCATGAAGTCGA
131 CCTCTTAGCCCTTATCTCTTTCTAATTTGTGCGAAAGGCTTTTCAACGCTGCTTCATGAAGTCAA
95312921 GCAAAATGACCTTATACGGGGTACGCCTATTGGAAGAGGAAAATTCTCCGTCAATCATCT
196 GCAAAATGACCTTATACGGGGTACGCCTATTGGAAGAGGAAAATTCTCCGTCAATCATCT
95312981 A
1 A
95312982 TTTTTTGCAG
Statistics
Matches: 243, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
255 243 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (255 bp):
AAATAAATTTCTTCATACCGATTGGATCATTCTTGTTATGAGGTGTGTGTGTTCTATCTCGTATA
CGGTAGGTCTTAATGGGGAAATGAGTGTGTGGTTTGAGCCGTCAAGGGGTTTGAGGCAAGGGGAT
CCTCTTAGCCCTTATCTCTTTCTAATTTGTGCGAAAGGCTTTTCAACGCTGCTTCATGAAGTCAA
GCAAAATGACCTTATACGGGGTACGCCTATTGGAAGAGGAAAATTCTCCGTCAATCATCT
Found at i:95316291 original size:13 final size:13
Alignment explanation
Indices: 95316234--95316292 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
95316224 GTTTATAATG
*
95316234 TTATTTTTAAATT
1 TTATTTTTAAATA
* *
95316247 TTATTATTACAT-
1 TTATTTTTAAATA
*
95316259 TT-TATTTAAATTA
1 TTATTTTTAAA-TA
95316272 TTTATTTTTAAATA
1 -TTATTTTTAAATA
95316286 TTATTTT
1 TTATTTT
95316293 ATTATTTATC
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
11 5 0.14
12 3 0.08
13 17 0.47
14 4 0.11
15 7 0.19
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (13 bp):
TTATTTTTAAATA
Found at i:95316713 original size:13 final size:13
Alignment explanation
Indices: 95316697--95316725 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
95316687 ACAAAATTCA
95316697 TTTAGAAGGATAT
1 TTTAGAAGGATAT
95316710 TTTAGAAGGATAT
1 TTTAGAAGGATAT
95316723 TTT
1 TTT
95316726 TTTTACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (13 bp):
TTTAGAAGGATAT
Found at i:95316722 original size:43 final size:43
Alignment explanation
Indices: 95316661--95316757 Score: 194
Period size: 43 Copynumber: 2.3 Consensus size: 43
95316651 AGATCCATAT
95316661 GGATATTTTAGAAGGATATTTTTTTTACAAAATTCATTTAGAA
1 GGATATTTTAGAAGGATATTTTTTTTACAAAATTCATTTAGAA
95316704 GGATATTTTAGAAGGATATTTTTTTTACAAAATTCATTTAGAA
1 GGATATTTTAGAAGGATATTTTTTTTACAAAATTCATTTAGAA
95316747 GGATATTTTAG
1 GGATATTTTAG
95316758 GTATTTAGAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.44
Consensus pattern (43 bp):
GGATATTTTAGAAGGATATTTTTTTTACAAAATTCATTTAGAA
Found at i:95317073 original size:14 final size:16
Alignment explanation
Indices: 95317034--95317073 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
95317024 CATTTCATGC
95317034 AAATAT-AATCATAGA
1 AAATATAAATCATAGA
95317049 AAATAATAAAT-ATAG-
1 AAAT-ATAAATCATAGA
95317064 AAATATAAAT
1 AAATATAAAT
95317074 TGCATAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 8 0.35
16 6 0.26
17 3 0.13
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (16 bp):
AAATATAAATCATAGA
Found at i:95317098 original size:69 final size:66
Alignment explanation
Indices: 95316955--95317124 Score: 189
Period size: 69 Copynumber: 2.5 Consensus size: 66
95316945 AAACATACTT
*
95316955 TAACATTTCATGCAAATATAATATAGAAAACAACAAATAACGACATAAATTACATAATATATATA
1 TAACATTTCATGCAAATATAATATAGAAAACAACAAATAACGACATAAATTACATAATATATACA
*
95317020 T
66 A
** * * * *
95317021 TGGCATTTCATGCAAATATAATCATAGAAAATAATAAATATA-GAAATATAAATTGCATAATATA
1 TAACATTTCATGCAAATATAAT-ATAGAAAACAACAAATA-ACG--ACATAAATTACATAATATA
95317085 TACAA
62 TACAA
* ** *
95317090 TAATATTTCATGCAAATATAACCTAAAAAACAACA
1 TAACATTTCATGCAAATATAATATAGAAAACAACA
95317125 TAAATTACAT
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
66 20 0.24
67 16 0.19
68 10 0.12
69 38 0.45
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.29
Consensus pattern (66 bp):
TAACATTTCATGCAAATATAATATAGAAAACAACAAATAACGACATAAATTACATAATATATACA
A
Found at i:95317491 original size:14 final size:14
Alignment explanation
Indices: 95317472--95317513 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
95317462 AAACAATTTT
95317472 TATATGATAAATAA
1 TATATGATAAATAA
95317486 TATATGA-AAATAA
1 TATATGATAAATAA
95317499 TTATAT-ATAAA-AA
1 -TATATGATAAATAA
95317512 TA
1 TA
95317514 ACGTGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.08
13 9 0.35
14 15 0.58
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (14 bp):
TATATGATAAATAA
Found at i:95319252 original size:90 final size:90
Alignment explanation
Indices: 95319096--95319959 Score: 1246
Period size: 90 Copynumber: 9.6 Consensus size: 90
95319086 ACCATGCTGA
* * * * ** * *
95319096 TATCTTTGACCTGCTCTCCGTCTAGTACAGAGACATCGAATCTGTCATCTTCAATCTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
95319161 GTAAACACAAAAATGTTAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* * * *
95319186 TATCTTTGATCTGCTCCCCGTCTAATACATAGACGCCAAATTTGTCATCTTCGATCTGCTTTGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
95319251 GTAAACACACAAATGTCAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* * *
95319276 TATCTTCGATCTACTCCCCG-CTTAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTTCGA
1 TATCTTCGATCTGCTCCCCGTC-TAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGA
* *
95319340 TGTAAACACATAAATGTCAAATCTGC
65 TGTAAACACACAAATGTCAGATCTGC
* * * *
95319366 TATCTTCGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTTGATCTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
95319431 GTAAACACATAAATGTCAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* *
95319456 TATCTTCGATCTGTTCCTCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
95319521 GTAAACAAACAAATGTCAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* * *
95319546 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCCGTCATCTTCAATCTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
**
95319611 GTAAACACACGGATGTCAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* * * *
95319636 TATCTTCGATCTGCTCCCCGTCTAATACAGAGAAGCCAAATTTGTCATCTTCGATCTACTTTGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* * *
95319701 GTAAACACACGAATGTTAGATCTAC
66 GTAAACACACAAATGTCAGATCTGC
* * *
95319726 TATCTTCGATCTGCTCCTCGTCTAATACAGAGACGCCAAATCTATCATCTTCAATCTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* * *
95319791 GTAAATACACGAATGTTAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* * *
95319816 TATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCAATTTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
95319881 GTAAACACACGAATGTCAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* *
95319906 TATCTTCGATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTG-CTTCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
95319960 TTGTTCTCCG
Statistics
Matches: 704, Mismatches: 68, Indels: 5
0.91 0.09 0.01
Matches are distributed among these distances:
89 9 0.01
90 694 0.99
91 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (90 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
GTAAACACACAAATGTCAGATCTGC
Found at i:95328111 original size:14 final size:16
Alignment explanation
Indices: 95328081--95328112 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
95328071 GAATGCATAT
95328081 AATGCGATGAGATGCA
1 AATGCGATGAGATGCA
95328097 AATGC-ATGA-ATGCA
1 AATGCGATGAGATGCA
95328111 AA
1 AA
95328113 AAAATATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (16 bp):
AATGCGATGAGATGCA
Found at i:95331474 original size:14 final size:16
Alignment explanation
Indices: 95331435--95331474 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
95331425 CATTTCATGC
95331435 AAATAT-AATCATAGA
1 AAATATAAATCATAGA
95331450 AAATAATAAAT-ATAG-
1 AAAT-ATAAATCATAGA
95331465 AAATATAAAT
1 AAATATAAAT
95331475 TACATAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 8 0.35
16 6 0.26
17 3 0.13
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (16 bp):
AAATATAAATCATAGA
Found at i:95331499 original size:69 final size:66
Alignment explanation
Indices: 95331356--95331525 Score: 198
Period size: 69 Copynumber: 2.5 Consensus size: 66
95331346 ATACATACTT
**
95331356 TAACATTTCATGCAAATATAATATAGAAAACAACAAATAACGACATAAATTACATAATATATGTA
1 TAACATTTCATGCAAATATAATATAGAAAACAACAAATAACGACATAAATTACATAATATATACA
*
95331421 T
66 A
* * * *
95331422 TGACATTTCATGCAAATATAATCATAGAAAATAATAAATATA-GAAATATAAATTACATAATATA
1 TAACATTTCATGCAAATATAAT-ATAGAAAACAACAAATA-ACG--ACATAAATTACATAATATA
95331486 TACAA
62 TACAA
* ** *
95331491 TAATATTTCATGCAAATATAACCTAAAAAACAACA
1 TAACATTTCATGCAAATATAATATAGAAAACAACA
95331526 TAAATTACAT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
66 21 0.24
67 16 0.19
68 10 0.12
69 39 0.45
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (66 bp):
TAACATTTCATGCAAATATAATATAGAAAACAACAAATAACGACATAAATTACATAATATATACA
A
Found at i:95331897 original size:14 final size:15
Alignment explanation
Indices: 95331877--95331915 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
95331867 AAAACAATTT
95331877 TTATATGATAAATAA
1 TTATATGATAAATAA
95331892 -TATATGA-AAATAA
1 TTATATGATAAATAA
95331905 TTATAT-ATAAA
1 TTATATGATAAA
95331916 AATCATGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (15 bp):
TTATATGATAAATAA
Found at i:95334768 original size:12 final size:12
Alignment explanation
Indices: 95334753--95334804 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 12
95334743 TTAAATATAT
95334753 ATACGGGTCAAA
1 ATACGGGTCAAA
95334765 ATACGGGT-AAA
1 ATACGGGTCAAA
*
95334776 A-ATGGGTCAAA
1 ATACGGGTCAAA
95334787 ATAC-GGT-AAA
1 ATACGGGTCAAA
95334797 A-ACGGGTC
1 ATACGGGTC
95334805 GCGTCTGGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 2 0.06
10 12 0.35
11 11 0.32
12 9 0.26
ACGTcount: A:0.42, C:0.13, G:0.27, T:0.17
Consensus pattern (12 bp):
ATACGGGTCAAA
Found at i:95334796 original size:21 final size:22
Alignment explanation
Indices: 95334755--95334804 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
95334745 AAATATATAT
95334755 ACGGGTCAAAATACGGGTAAAA
1 ACGGGTCAAAATACGGGTAAAA
*
95334777 ATGGGTCAAAATAC-GGTAAAA
1 ACGGGTCAAAATACGGGTAAAA
95334798 ACGGGTC
1 ACGGGTC
95334805 GCGTCTGGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.42, C:0.14, G:0.28, T:0.16
Consensus pattern (22 bp):
ACGGGTCAAAATACGGGTAAAA
Found at i:95334893 original size:32 final size:32
Alignment explanation
Indices: 95334843--95334945 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 32
95334833 GCCCTTCATA
* * *
95334843 CTGCTCGAACAGTCCTCCCTGCAGCCTGCCTG
1 CTGCCCGAATAGTCCTCCCTGCAGCCTGCATG
* *
95334875 CTGCCCGAATAGTTCTCCCTGCAACCTGCATG
1 CTGCCCGAATAGTCCTCCCTGCAGCCTGCATG
* * *
95334907 TTGCCCG-ATCAATCCTCCCTGTAGCCTGCATG
1 CTGCCCGAAT-AGTCCTCCCTGCAGCCTGCATG
95334939 CATGCCC
1 C-TGCCC
95334946 CTACTCAGCT
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
31 2 0.03
32 51 0.88
33 5 0.09
ACGTcount: A:0.16, C:0.41, G:0.19, T:0.24
Consensus pattern (32 bp):
CTGCCCGAATAGTCCTCCCTGCAGCCTGCATG
Found at i:95335109 original size:31 final size:30
Alignment explanation
Indices: 95335067--95335138 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 30
95335057 CCGAAAGAGG
*
95335067 GAAAGAAAAGAGACA-AAGGAG-AAGAAAAAA
1 GAAA-AAAAGAGA-ATAAGAAGAAAGAAAAAA
95335097 GGAAGAAAAAGAGAATAAGAAGAAAGAAAAAA
1 -GAA-AAAAAGAGAATAAGAAGAAAGAAAAAA
95335129 GAAAAAAAGA
1 GAAAAAAAGA
95335139 AAAAAAATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
30 8 0.22
31 19 0.51
32 10 0.27
ACGTcount: A:0.72, C:0.01, G:0.25, T:0.01
Consensus pattern (30 bp):
GAAAAAAAGAGAATAAGAAGAAAGAAAAAA
Found at i:95335127 original size:22 final size:18
Alignment explanation
Indices: 95335088--95335145 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 18
95335078 GACAAAGGAG
*
95335088 AAGAAAAAAGGAAGAAAAA
1 AAGAAAAAAAGAA-AAAAA
* *
95335107 GAGAATAAGAAGAAAGAAAA
1 AAGAA-AAAAAGAAA-AAAA
95335127 AAGAAAAAAAGAAAAAAA
1 AAGAAAAAAAGAAAAAAA
95335145 A
1 A
95335146 TGTAATGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 5 0.16
19 13 0.41
20 14 0.44
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (18 bp):
AAGAAAAAAAGAAAAAAA
Found at i:95335130 original size:28 final size:28
Alignment explanation
Indices: 95335086--95335139 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
95335076 GAGACAAAGG
* *
95335086 AGAAGAAAAAAGGAAGAAAAAGAGAATA
1 AGAAGAAAAAAGAAAGAAAAAAAGAATA
95335114 AGAAGAAAGAAA-AAAGAAAAAAAGAA
1 AGAAGAAA-AAAGAAAGAAAAAAAGAA
95335140 AAAAAATGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 20 0.87
29 3 0.13
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (28 bp):
AGAAGAAAAAAGAAAGAAAAAAAGAATA
Found at i:95335143 original size:8 final size:8
Alignment explanation
Indices: 95335088--95335144 Score: 55
Period size: 8 Copynumber: 7.2 Consensus size: 8
95335078 GACAAAGGAG
95335088 AAGAAAAA
1 AAGAAAAA
*
95335096 AGGAAGAAA
1 AAGAA-AAA
* *
95335105 AAGAGAAT
1 AAGAAAAA
*
95335113 AAG-AAGA
1 AAGAAAAA
95335120 AAG-AAAA
1 AAGAAAAA
95335127 AAGAAAAA
1 AAGAAAAA
95335135 AAGAAAAA
1 AAGAAAAA
95335143 AA
1 AA
95335145 ATGTAATGTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
7 10 0.26
8 23 0.59
9 6 0.15
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:95335558 original size:19 final size:19
Alignment explanation
Indices: 95335534--95335609 Score: 98
Period size: 19 Copynumber: 3.8 Consensus size: 19
95335524 AATCTTTAAG
95335534 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
95335553 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95335572 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
95335593 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
95335610 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
19 30 0.60
20 3 0.06
21 9 0.18
22 8 0.16
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:95335578 original size:38 final size:40
Alignment explanation
Indices: 95335534--95335609 Score: 120
Period size: 38 Copynumber: 1.9 Consensus size: 40
95335524 AATCTTTAAG
95335534 GATATGCAATCTT-AGATATGAT-ATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATCATGTAATCTTAGATAT
*
95335572 GATATGCAATCTTGAAGATATGATCTTGTAATCTTAGA
1 GATATGCAATCTT-AAGATATGATCATGTAATCTTAGA
95335610 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
38 13 0.38
40 9 0.26
41 12 0.35
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATCATGTAATCTTAGATAT
Found at i:95342363 original size:132 final size:132
Alignment explanation
Indices: 95342126--95343100 Score: 1599
Period size: 132 Copynumber: 7.4 Consensus size: 132
95342116 TACAGAAACA
** * * *
95342126 AGATTTGGCATATCTTTGTTTATAGGGAACAGATCGAAGATAGCAAATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
95342191 ACAGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95342256 GC
131 GC
* *
95342258 AGATTTGGCATCCCTGTGTTTATAGGGAATAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
95342323 ACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95342388 GC
131 GC
*
95342390 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
95342455 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCAGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95342520 GC
131 GC
*
95342522 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
95342587 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95342652 GC
131 GC
* * * *
95342654 AGATTTGGTATCCCTGTGTTTATAGGGAACAAATCGAAGATATCAGATCTAACACTCCTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
** *
95342719 ACAATGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95342784 GC
131 GC
* * * * *
95342786 AAATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGTAGATCTGACATTCCTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
95342851 ACAGCGAAGCAGATCGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95342916 GC
131 GC
* * * *
95342918 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAATATAGCAGATCTGACATTCCTATACTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * * * * *
95342983 ATAGCAAAGCAGATCGAAGATTTGAACATGACATCCCTATGTTTATAGGGAACAAATTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
95343048 GC
131 GC
*
95343050 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATCTG
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTG
95343101 GCATCTCCAT
Statistics
Matches: 794, Mismatches: 49, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 794 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:95343698 original size:14 final size:15
Alignment explanation
Indices: 95343679--95343735 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
95343669 AATCTTTAAG
95343679 GATATG-CAATCTTA
1 GATATGACAATCTTA
95343693 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
95343710 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
95343729 GATATGA
1 GATATGA
95343736 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:95343720 original size:36 final size:38
Alignment explanation
Indices: 95343679--95343757 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
95343669 AATCTTTAAG
95343679 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
95343715 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
95343755 GAT
1 GAT
95343758 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:95343726 original size:19 final size:19
Alignment explanation
Indices: 95343679--95343757 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
95343669 AATCTTTAAG
95343679 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95343698 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95343715 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95343734 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
95343755 GAT
1 GAT
95343758 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:95350229 original size:17 final size:17
Alignment explanation
Indices: 95350207--95350240 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
95350197 AAAAATTCTT
95350207 TTTCCCGATTGTAGTTG
1 TTTCCCGATTGTAGTTG
95350224 TTTCCCGATTGTAGTTG
1 TTTCCCGATTGTAGTTG
95350241 GTCATCTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.18, G:0.24, T:0.47
Consensus pattern (17 bp):
TTTCCCGATTGTAGTTG
Found at i:95362003 original size:12 final size:12
Alignment explanation
Indices: 95361986--95362015 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
95361976 ATGATTGAAC
95361986 TCATATTGAGCT
1 TCATATTGAGCT
*
95361998 TTATATTGAGCT
1 TCATATTGAGCT
95362010 TCATAT
1 TCATAT
95362016 CTCACTATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (12 bp):
TCATATTGAGCT
Found at i:95362158 original size:23 final size:21
Alignment explanation
Indices: 95362119--95362161 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
95362109 TTTATTAAAA
95362119 ATATTTTAAGATTATTATTTG
1 ATATTTTAAGATTATTATTTG
*
95362140 ATATTTTTAGACTTAATTATTT
1 ATATTTTAAGA-TT-ATTATTT
95362162 TATTTTGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 2 0.11
23 7 0.37
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (21 bp):
ATATTTTAAGATTATTATTTG
Found at i:95362165 original size:21 final size:20
Alignment explanation
Indices: 95362119--95362167 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
95362109 TTTATTAAAA
95362119 ATATTTTAAGATTATTATTT
1 ATATTTTAAGATTATTATTT
*
95362139 GATATTTTTAGACTTAATTATTT
1 -ATATTTTAAGA-TT-ATTATTT
95362162 -TATTTT
1 ATATTTT
95362168 GAACTGTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 16 0.64
22 2 0.08
23 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (20 bp):
ATATTTTAAGATTATTATTT
Found at i:95363118 original size:2 final size:2
Alignment explanation
Indices: 95363108--95363138 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
95363098 TGTTTTTTTC
*
95363108 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95363139 ATTTTCAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:95363294 original size:21 final size:23
Alignment explanation
Indices: 95363270--95363315 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
95363260 ATTCGAATAT
95363270 TAAGTA-GAA-TAAAAAAAATTA
1 TAAGTACGAATTAAAAAAAATTA
*
95363291 TAAGTACTAATTTAAAAAAAATTA
1 TAAGTACGAA-TTAAAAAAAATTA
95363315 T
1 T
95363316 CAAATTTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 2 0.10
24 13 0.62
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (23 bp):
TAAGTACGAATTAAAAAAAATTA
Found at i:95363766 original size:2 final size:2
Alignment explanation
Indices: 95363759--95363785 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
95363749 CTTAAACATA
95363759 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
95363786 ATGATGCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95371192 original size:2 final size:2
Alignment explanation
Indices: 95371180--95371215 Score: 63
Period size: 2 Copynumber: 17.5 Consensus size: 2
95371170 GTTTAAGAAA
95371180 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95371216 GATGAGTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Done.