Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 328 of 427
Found at i:95627760 original size:17 final size:17
Alignment explanation
Indices: 95627735--95627770 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
95627725 TGGACATGAT
95627735 GTGTAGACTCATGCAAA
1 GTGTAGACTCATGCAAA
*
95627752 GTGTGGACTCATGCAAA
1 GTGTAGACTCATGCAAA
95627769 GT
1 GT
95627771 AGTTGCCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (17 bp):
GTGTAGACTCATGCAAA
Found at i:95629569 original size:13 final size:13
Alignment explanation
Indices: 95629547--95629579 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
95629537 AAGGGTTTGT
95629547 TTAT-TAAACTAA
1 TTATCTAAACTAA
95629559 TTATCTAAACTAA
1 TTATCTAAACTAA
*
95629572 TTAACTAA
1 TTATCTAA
95629580 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:95632502 original size:12 final size:11
Alignment explanation
Indices: 95632487--95632565 Score: 61
Period size: 12 Copynumber: 6.7 Consensus size: 11
95632477 AACAAAATTG
95632487 AAATGAAAATAA
1 AAAT-AAAATAA
*
95632499 AAATCAAAAGAA
1 AAAT-AAAATAA
95632511 AAATAAGAATAA
1 AAATAA-AATAA
*
95632523 AATAAATAAATAA
1 AA-ATA-AAATAA
95632536 AAATAAGAATAA
1 AAATAA-AATAA
*
95632548 GAAT-AAATAA
1 AAATAAAATAA
*
95632558 AAAGAAAA
1 AAATAAAA
95632566 AGAAAATAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
10 7 0.13
11 7 0.13
12 30 0.56
13 9 0.17
14 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:95632543 original size:25 final size:26
Alignment explanation
Indices: 95632509--95632558 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
95632499 AAATCAAAAG
95632509 AAAAATAAGAATAA-AATAAATAAAT
1 AAAAATAAGAATAAGAATAAATAAAT
95632534 AAAAATAAGAATAAGAATAAATAAA
1 AAAAATAAGAATAAGAATAAATAAA
95632559 AAGAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (26 bp):
AAAAATAAGAATAAGAATAAATAAAT
Found at i:95641609 original size:56 final size:56
Alignment explanation
Indices: 95641549--95641659 Score: 222
Period size: 56 Copynumber: 2.0 Consensus size: 56
95641539 CTTTAATATT
95641549 AAGTAAATTAATAATTATATAACAAGTGTACATATTTATATTATTACAAATGTCAA
1 AAGTAAATTAATAATTATATAACAAGTGTACATATTTATATTATTACAAATGTCAA
95641605 AAGTAAATTAATAATTATATAACAAGTGTACATATTTATATTATTACAAATGTCA
1 AAGTAAATTAATAATTATATAACAAGTGTACATATTTATATTATTACAAATGTCA
95641660 TTATCTAATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (56 bp):
AAGTAAATTAATAATTATATAACAAGTGTACATATTTATATTATTACAAATGTCAA
Found at i:95641839 original size:15 final size:14
Alignment explanation
Indices: 95641821--95641851 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
95641811 TTAATTTATT
95641821 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
95641836 TAATAATAATCTAA
1 TAATAATAATCTAA
95641850 TA
1 TA
95641852 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:95641862 original size:21 final size:20
Alignment explanation
Indices: 95641838--95641906 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
95641828 AATGCTAATA
95641838 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
95641859 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
95641878 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
95641899 ATAATAAT
1 ATAATAAT
95641907 AATTATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:95641910 original size:40 final size:40
Alignment explanation
Indices: 95641833--95641924 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
95641823 ATAATAATGC
**
95641833 TAATAATAATAATCTAATATAAAACCATAATGTTAATTAA
1 TAATAATAATAATCTAATATAAAACCATAATAATAATTAA
* *
95641873 TAATTATAATAATTTAATATAAAACCATAATAATAATT-A
1 TAATAATAATAATCTAATATAAAACCATAATAATAATTAA
*
95641912 TTATAATATATAA
1 TAATAATA-ATAA
95641925 AACCTAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 7 0.16
40 38 0.84
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.38
Consensus pattern (40 bp):
TAATAATAATAATCTAATATAAAACCATAATAATAATTAA
Found at i:95643463 original size:13 final size:13
Alignment explanation
Indices: 95643441--95643473 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
95643431 AAGGGTTTGT
95643441 TTAT-TAAACTAA
1 TTATCTAAACTAA
95643453 TTATCTAAACTAA
1 TTATCTAAACTAA
*
95643466 TTAACTAA
1 TTATCTAA
95643474 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:95652281 original size:50 final size:49
Alignment explanation
Indices: 95652206--95652431 Score: 240
Period size: 50 Copynumber: 4.5 Consensus size: 49
95652196 TGAATACACG
* * *
95652206 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTTAA-TCACA
* * ** *
95652256 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-A-GACTGTTAATCACA
* * *
95652307 TGTGTAGTACTAAGTGGAGGCTACTACGTGTATCAGA-TGATGAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTG-TTA-ATCACA
* * * * *
95652357 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTTAATCACA
95652406 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
95652432 TGCATATCAT
Statistics
Matches: 147, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 32 0.22
50 70 0.48
51 36 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTTAATCACA
Found at i:95652561 original size:27 final size:26
Alignment explanation
Indices: 95652531--95652582 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
95652521 GGGAAAACCG
95652531 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
95652558 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
95652583 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:95665932 original size:32 final size:30
Alignment explanation
Indices: 95665865--95665933 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
95665855 CACACGGGTA
*
95665865 GACACACAGGCCTATGTCTAGGTTGTGTGT
1 GACACACAGGCCTATGTCTAGGCTGTGTGT
*
95665895 GACACACGGGCCTATGTCTAGGCTGTGTGT
1 GACACACAGGCCTATGTCTAGGCTGTGTGT
95665925 GACACACAG
1 GACACACAG
95665934 TCAGCCTCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (30 bp):
GACACACAGGCCTATGTCTAGGCTGTGTGT
Found at i:95679624 original size:18 final size:17
Alignment explanation
Indices: 95679601--95679634 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
95679591 TAGCTGTGCC
95679601 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
95679619 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
95679635 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:95680781 original size:25 final size:25
Alignment explanation
Indices: 95680752--95680799 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95680742 TTATAATATG
* * *
95680752 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95680777 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95680800 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95680902 original size:20 final size:20
Alignment explanation
Indices: 95680836--95680902 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
95680826 ATTTTGATAA
*
95680836 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95680856 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* * *
95680876 ACATGATATGAATGACATGT
1 ACATGATATGTATGATATGC
95680896 ACATGAT
1 ACATGAT
95680903 GTATTTATGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95681037 original size:23 final size:24
Alignment explanation
Indices: 95680951--95681114 Score: 266
Period size: 24 Copynumber: 7.0 Consensus size: 24
95680941 GAGGAAGTGC
95680951 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95680975 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95680999 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95681023 AAAAGGG-TTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95681046 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95681068 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95681091 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95681115 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 1, Indels: 11
0.92 0.01 0.08
Matches are distributed among these distances:
22 18 0.14
23 46 0.35
24 61 0.46
25 8 0.06
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95681341 original size:31 final size:31
Alignment explanation
Indices: 95681306--95681369 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95681296 CGTTTACAGT
95681306 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
95681337 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
95681368 AA
1 AA
95681370 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:95687762 original size:12 final size:11
Alignment explanation
Indices: 95687735--95687765 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
95687725 TCTGTATTAG
95687735 TTTTCTCTTCT
1 TTTTCTCTTCT
95687746 TTTTCTCTTCT
1 TTTTCTCTTCT
95687757 TTTT-TCTTC
1 TTTTCTCTTC
95687766 CCTAGCCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.25
11 15 0.75
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTCTCTTCT
Found at i:95688900 original size:25 final size:25
Alignment explanation
Indices: 95688871--95688918 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95688861 TTATAATATG
* * *
95688871 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95688896 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95688919 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95689002 original size:11 final size:11
Alignment explanation
Indices: 95688966--95689021 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
95688956 CATGGTATGT
95688966 ATGATATGCAC
1 ATGATATGCAC
* *
95688977 ATGACATG--T
1 ATGATATGCAC
95688986 ATGATATGCAC
1 ATGATATGCAC
95688997 ATGATATG-A-
1 ATGATATGCAC
*
95689006 ATGACATGCAC
1 ATGATATGCAC
95689017 ATGAT
1 ATGAT
95689022 GTATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95689021 original size:20 final size:20
Alignment explanation
Indices: 95688955--95689021 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
95688945 ATTTTGATAA
*
95688955 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95688975 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
95688995 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
95689015 ACATGAT
1 ACATGAT
95689022 GTATTTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95689138 original size:23 final size:24
Alignment explanation
Indices: 95689070--95689234 Score: 275
Period size: 23 Copynumber: 7.0 Consensus size: 24
95689060 GAGGAAGTGC
95689070 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95689094 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95689118 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95689141 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95689165 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95689188 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95689211 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95689235 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 1, Indels: 9
0.93 0.01 0.06
Matches are distributed among these distances:
23 65 0.48
24 62 0.46
25 8 0.06
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95689146 original size:47 final size:48
Alignment explanation
Indices: 95689070--95689234 Score: 275
Period size: 47 Copynumber: 3.5 Consensus size: 48
95689060 GAGGAAGTGC
95689070 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
95689118 AAAAGGGCTTATG-CCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
95689165 -AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
95689211 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95689235 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 1, Indels: 8
0.93 0.01 0.07
Matches are distributed among these distances:
46 25 0.22
47 63 0.56
48 24 0.21
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:95689459 original size:31 final size:31
Alignment explanation
Indices: 95689424--95689487 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95689414 CGTTTACAGT
95689424 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
95689455 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
95689486 AA
1 AA
95689488 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:95691718 original size:7 final size:7
Alignment explanation
Indices: 95691706--95691733 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
95691696 CCATAGCCCT
95691706 TTTCATA
1 TTTCATA
95691713 TTTCATA
1 TTTCATA
95691720 TTTCATA
1 TTTCATA
95691727 TTTCATA
1 TTTCATA
95691734 ACACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:95692051 original size:23 final size:23
Alignment explanation
Indices: 95691997--95692091 Score: 140
Period size: 23 Copynumber: 4.1 Consensus size: 23
95691987 CCTAGCCTCT
*
95691997 TTTAGTAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
95692019 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
95692044 TTTAATAACTGGGGCATAAG-CC
1 TTTAATAACTGGGGCATAAGCCC
*
95692066 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
95692089 TTT
1 TTT
95692092 TGCACTTCCT
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
22 21 0.31
23 25 0.37
24 15 0.22
25 6 0.09
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:95692092 original size:23 final size:23
Alignment explanation
Indices: 95691975--95692092 Score: 152
Period size: 24 Copynumber: 5.0 Consensus size: 23
95691965 TGCTTTATCA
*
95691975 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
95691999 TAGTAACTGGGGCA-AAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
95692023 TAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
95692047 AATAACTGGGGCATAAG-CCTTT
1 TATAACTGGGGCATAAGCCCTTT
95692069 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
95692092 T
1 T
95692093 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
22 21 0.25
23 23 0.27
24 27 0.32
25 14 0.16
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:95692166 original size:20 final size:20
Alignment explanation
Indices: 95692141--95692207 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
95692131 TTATGATTAC
95692141 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
95692161 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
95692181 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
95692201 ACCATGT
1 ATCATGT
95692208 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:95692172 original size:11 final size:11
Alignment explanation
Indices: 95692141--95692196 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
95692131 TTATGATTAC
95692141 ATCATGTGCAT
1 ATCATGTGCAT
*
95692152 ATCA--TACAT
1 ATCATGTGCAT
95692161 ATCATGTGCAT
1 ATCATGTGCAT
*
95692172 ATCA--TACAT
1 ATCATGTGCAT
*
95692181 GTCATGTGCAT
1 ATCATGTGCAT
95692192 ATCAT
1 ATCAT
95692197 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:95699787 original size:7 final size:7
Alignment explanation
Indices: 95699775--95699802 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
95699765 CCATAGCCCT
95699775 TTTCATA
1 TTTCATA
95699782 TTTCATA
1 TTTCATA
95699789 TTTCATA
1 TTTCATA
95699796 TTTCATA
1 TTTCATA
95699803 ACACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:95699825 original size:30 final size:30
Alignment explanation
Indices: 95699789--95699851 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
95699779 ATATTTCATA
95699789 TTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
**
95699819 TTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
95699849 TTT
1 TTT
95699852 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:95700147 original size:23 final size:24
Alignment explanation
Indices: 95700044--95700162 Score: 181
Period size: 24 Copynumber: 5.0 Consensus size: 24
95700034 GCTTTATCAT
*
95700044 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
95700069 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
95700093 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
95700117 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
95700140 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
95700163 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
23 24 0.27
24 52 0.58
25 14 0.16
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:95700238 original size:20 final size:20
Alignment explanation
Indices: 95700213--95700273 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
95700203 TATGATTACA
95700213 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
*
95700233 TGCATATCATACATGTCATG
1 TGCATATCATACATATCATG
*
95700253 TGCATATCATACATACCATG
1 TGCATATCATACATATCATG
95700273 T
1 T
95700274 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:95706721 original size:20 final size:20
Alignment explanation
Indices: 95706696--95706734 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
95706686 GCCTCAGATC
95706696 TGACTGTTGTATCCTTAGTT
1 TGACTGTTGTATCCTTAGTT
*
95706716 TGACTGTTGTATCTTTAGT
1 TGACTGTTGTATCCTTAGT
95706735 CCCTCTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.13, G:0.21, T:0.51
Consensus pattern (20 bp):
TGACTGTTGTATCCTTAGTT
Found at i:95708483 original size:2 final size:2
Alignment explanation
Indices: 95708472--95708505 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
95708462 ATTTCATGAG
*
95708472 TA TA TA -A TA TA TA TA TA TA TA TA TA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95708506 CACCAACTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:95717690 original size:21 final size:20
Alignment explanation
Indices: 95717666--95717704 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95717656 TGAAATGCAA
95717666 TCAAACTAACACAAATTAAAT
1 TCAAACTAA-ACAAATTAAAT
* *
95717687 TCAAGCTAAACTAATTAA
1 TCAAACTAAACAAATTAA
95717705 TTAACCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.54, C:0.18, G:0.03, T:0.26
Consensus pattern (20 bp):
TCAAACTAAACAAATTAAAT
Found at i:95721834 original size:16 final size:17
Alignment explanation
Indices: 95721798--95721835 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
95721788 ATTTAAAAGG
*
95721798 AAAACAAATGAATCTTA
1 AAAACAAATGAATCCTA
95721815 AAAACAAATGAATCCTA
1 AAAACAAATGAATCCTA
95721832 AAAA
1 AAAA
95721836 TTTAATGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.63, C:0.13, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAACAAATGAATCCTA
Found at i:95730143 original size:23 final size:23
Alignment explanation
Indices: 95730117--95730160 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
95730107 CATGCTAATA
95730117 ATAAATGCAATC-ATTATGCATTC
1 ATAAAT-CAATCAATTATGCATTC
*
95730140 ATAAATCATTCAATTATGCAT
1 ATAAATCAATCAATTATGCAT
95730161 ATTAGGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (23 bp):
ATAAATCAATCAATTATGCATTC
Found at i:95743062 original size:43 final size:43
Alignment explanation
Indices: 95742910--95743074 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
95742900 ACCGAGATGA
* * * * *
95742910 GATTACATATAAGATCATGTCTGGGACATTGGAAT--TGTATTGC
1 GATTACGTATAATACCATGTCTGGGACATTGGCATCAT-TA-TAC
* ** *
95742953 GATTATGGGTAATACCATGTCTGGGACATTGGCATCATTATGC
1 GATTACGTATAATACCATGTCTGGGACATTGGCATCATTATAC
* * ** *
95742996 GATTACGTGTAAGACTTTGTCTGGGACATTGGCATCATTATAT
1 GATTACGTATAATACCATGTCTGGGACATTGGCATCATTATAC
** * *
95743039 GATTTTGTATAATACCATCTCTGGGACAGTGGCATC
1 GATTACGTATAATACCATGTCTGGGACATTGGCATC
95743075 GACATGTGAT
Statistics
Matches: 98, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
43 95 0.97
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
GATTACGTATAATACCATGTCTGGGACATTGGCATCATTATAC
Found at i:95749963 original size:43 final size:43
Alignment explanation
Indices: 95749878--95749997 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 43
95749868 ACTGAGATGA
**
95749878 GATTAC-ATGTAAGACCATAT-TGGGACATTGGCATTGTATTGC
1 GATTACGA-GTAAGACCATATCTGGGACATTGGCATCATATTGC
* * *
95749920 GATTATGAGTAAGACCATATCTGGAACATTGGCATCATTTTGC
1 GATTACGAGTAAGACCATATCTGGGACATTGGCATCATATTGC
* *
95749963 GATTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 GATTACGAGTAAGACCATATCTGGGACATTGGCAT
95749998 TGTAACATCC
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 17 0.25
43 50 0.75
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTACGAGTAAGACCATATCTGGGACATTGGCATCATATTGC
Found at i:95751958 original size:33 final size:33
Alignment explanation
Indices: 95751911--95752037 Score: 191
Period size: 33 Copynumber: 3.8 Consensus size: 33
95751901 TCTTTCTGAG
*
95751911 TGGTACACACAAAGTATACCTTACCTTTTCATA
1 TGGTATACACAAAGTATACCTTACCTTTTCATA
* *
95751944 TGATATACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTACCTTTTCATA
* * *
95751977 TGGTATACAAAAAGTATACCTAACCTTTTCAAA
1 TGGTATACACAAAGTATACCTTACCTTTTCATA
*
95752010 TGGTATACACAAAGTATACCTTTCCTTT
1 TGGTATACACAAAGTATACCTTACCTTT
95752038 CCAAATTTGA
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTTACCTTTTCATA
Found at i:95752098 original size:29 final size:31
Alignment explanation
Indices: 95752046--95752243 Score: 167
Period size: 31 Copynumber: 6.5 Consensus size: 31
95752036 TTCCAAATTT
* * *
95752046 GATAGTCGAAGCTATCCCTTTTCAC-ATTC-
1 GATAGCCGAAGCTATCCATTTTCACTAATCA
95752075 GATAGCCGAAGCTAT-CATTATTCACTAATCA
1 GATAGCCGAAGCTATCCATT-TTCACTAATCA
* * *
95752106 GGTAGCCGAAGCTA-CTACTTTTCACTGATCA
1 GATAGCCGAAGCTATCCA-TTTTCACTAATCA
* * * *
95752137 GGTAGCCAAAGCTA-CCATTTTTCATTGATCA
1 GATAGCCGAAGCTATCCA-TTTTCACTAATCA
* *
95752168 GGTAGCCGAAGCTA-CCACTTTTCACTGATCA
1 GATAGCCGAAGCTATCCA-TTTTCACTAATCA
* *
95752199 GGTAGCCGAAGCTA-CCACTTTTCACTGATCA
1 GATAGCCGAAGCTATCCA-TTTTCACTAATCA
*
95752230 GGTAGCCGAAGCTA
1 GATAGCCGAAGCTA
95752244 CTACTTTTCA
Statistics
Matches: 151, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
28 3 0.02
29 19 0.13
30 3 0.02
31 124 0.82
32 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
GATAGCCGAAGCTATCCATTTTCACTAATCA
Found at i:95752115 original size:31 final size:31
Alignment explanation
Indices: 95752077--95752254 Score: 277
Period size: 31 Copynumber: 5.7 Consensus size: 31
95752067 TCACATTCGA
* *
95752077 TAGCCGAAGCTATCA-TTATTCACTAATCAGG
1 TAGCCGAAGCTACCACTT-TTCACTGATCAGG
*
95752108 TAGCCGAAGCTACTACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* * *
95752139 TAGCCAAAGCTACCATTTTTCATTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
95752170 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
95752201 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
95752232 TAGCCGAAGCTACTACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCAC
95752255 ATTGTACACA
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
31 133 0.99
32 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGG
Found at i:95754875 original size:21 final size:23
Alignment explanation
Indices: 95754849--95754890 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
95754839 GGGAATTGGT
95754849 ATGACATG-TTTGG-TGCATAAA
1 ATGACATGTTTTGGTTGCATAAA
95754870 ATGACATGTTTTGGTTGCATA
1 ATGACATGTTTTGGTTGCATA
95754891 TTAATGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 5 0.26
23 6 0.32
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (23 bp):
ATGACATGTTTTGGTTGCATAAA
Found at i:95757021 original size:18 final size:19
Alignment explanation
Indices: 95756984--95757021 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
95756974 TACTCAGGGT
*
95756984 AATTTTACCGATACATTTTC
1 AATTATACCGATA-ATTTTC
95757004 AATTATACCGAT-ATTTTC
1 AATTATACCGATAATTTTC
95757022 TTGTGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (19 bp):
AATTATACCGATAATTTTC
Found at i:95763807 original size:42 final size:42
Alignment explanation
Indices: 95763737--95763853 Score: 121
Period size: 42 Copynumber: 2.8 Consensus size: 42
95763727 CAAAAAGCTC
* ** *
95763737 ATACAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAA
1 ATACGATGCCAACATCCCAGACAG-GGTCTTACATGAAATCAA
* * * *
95763779 ATATCGATGCC-ACTTCCCAGATAGGGTCTTATATGAAATCTA
1 ATA-CGATGCCAACATCCCAGACAGGGTCTTACATGAAATCAA
*
95763821 ATACGATGCCAACATCCCAGACATGGTCTTACA
1 ATACGATGCCAACATCCCAGACAGGGTCTTACA
95763854 CATAAATCAT
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 7 0.11
42 47 0.77
43 7 0.11
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
ATACGATGCCAACATCCCAGACAGGGTCTTACATGAAATCAA
Found at i:95766795 original size:27 final size:27
Alignment explanation
Indices: 95766765--95766821 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
95766755 ACGGTCATTT
*
95766765 TACCCTACAAGG-GTATTTCGATAATCC
1 TACCCTAC-AGGCGTATTTCGATAATAC
*
95766792 TACCCTACAGGCGTATTTCGGTAATAC
1 TACCCTACAGGCGTATTTCGATAATAC
95766819 TAC
1 TAC
95766822 TACACAGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (27 bp):
TACCCTACAGGCGTATTTCGATAATAC
Found at i:95766828 original size:27 final size:26
Alignment explanation
Indices: 95766769--95766836 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 26
95766759 TCATTTTACC
*
95766769 CTACA-AGGGTATTTCGATAATCCTA
1 CTACACAGGGTATTTCGATAATACTA
* *
95766794 C-CCTACAGGCGTATTTCGGTAATACTA
1 CTAC-ACAGG-GTATTTCGATAATACTA
95766821 CTACACAGGGGTATTT
1 CTACACA-GGGTATTT
95766837 TAGTAATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 1 0.03
25 2 0.06
26 3 0.09
27 25 0.74
28 3 0.09
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
CTACACAGGGTATTTCGATAATACTA
Found at i:95766856 original size:27 final size:27
Alignment explanation
Indices: 95766826--95766958 Score: 169
Period size: 27 Copynumber: 5.0 Consensus size: 27
95766816 TACTACTACA
* *
95766826 CAGGGGTATTTTAGTAATTTTATAAAT
1 CAGGGGTATTTCAGTAATTTTACAAAT
* * *
95766853 CAGGGGTATTTCAATAACTTTACAAGT
1 CAGGGGTATTTCAGTAATTTTACAAAT
* *
95766880 CAAGGGTATTTCAGTAATTTCACAAAT
1 CAGGGGTATTTCAGTAATTTTACAAAT
*
95766907 CAGGGGTATTTCAGTAATTTTAC-AAC
1 CAGGGGTATTTCAGTAATTTTACAAAT
* *
95766933 CTGGGGTATTTTAGTAATTTTACAAA
1 CAGGGGTATTTCAGTAATTTTACAAA
95766959 GAAGTGGTCT
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.26
27 67 0.74
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTCAGTAATTTTACAAAT
Found at i:95766862 original size:54 final size:52
Alignment explanation
Indices: 95766799--95766958 Score: 176
Period size: 54 Copynumber: 3.0 Consensus size: 52
95766789 TCCTACCCTA
* * * * *
95766799 CAGGCGTATTTCGGTAATACTACTACACAGGGGTATTTTAGTAATTTTATAAAT
1 CAGGGGTATTTCAGTAAT-TTACAAC-CAGGGGTATTTTAGTAATTTTACAAAT
* * * * *
95766853 CAGGGGTATTTCAATAACTTTACAAGTCAAGGGTATTTCAGTAATTTCACAAAT
1 CAGGGGTATTTCAGTAA-TTTACAA-CCAGGGGTATTTTAGTAATTTTACAAAT
*
95766907 CAGGGGTATTTCAGTAATTTTACAACCTGGGGTATTTTAGTAATTTTACAAA
1 CAGGGGTATTTCAGTAA-TTTACAACCAGGGGTATTTTAGTAATTTTACAAA
95766959 GAAGTGGTCT
Statistics
Matches: 87, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
53 22 0.25
54 64 0.74
55 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (52 bp):
CAGGGGTATTTCAGTAATTTACAACCAGGGGTATTTTAGTAATTTTACAAAT
Found at i:95770321 original size:27 final size:26
Alignment explanation
Indices: 95770284--95770398 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
95770274 AGCATGGCTG
** *
95770284 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
95770310 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
95770338 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
95770365 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
95770392 CCAGAAC
1 CCAGAAC
95770399 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 16 0.20
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:95770343 original size:54 final size:54
Alignment explanation
Indices: 95770284--95770398 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
95770274 AGCATGGCTG
* *
95770284 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
95770338 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
95770392 CCAGAAC
1 CCAGAAC
95770399 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:95772049 original size:26 final size:25
Alignment explanation
Indices: 95772013--95772121 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 25
95772003 CATGAAATTC
95772013 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
95772039 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
*
95772065 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCCA
*
95772090 TTATCATTGAACATTTACCTAACCTA
1 TTATCA-TGAACATTTACCTAACCCA
95772116 TTATCA
1 TTATCA
95772122 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 22 0.27
26 59 0.73
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.35
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:95772093 original size:51 final size:52
Alignment explanation
Indices: 95772013--95772121 Score: 177
Period size: 51 Copynumber: 2.1 Consensus size: 52
95772003 CATGAAATTC
95772013 TTATCATGAAACATTTACCTAACCCATTATCA-TGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATTG-AACATTTACCTAACCCA
* *
95772065 TTATCATG-AACATTTACCTAACCTATTATCATTGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATTGAACATTTACCTAACCCA
95772116 TTATCA
1 TTATCA
95772122 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
51 44 0.81
52 10 0.19
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATTGAACATTTACCTAACCCA
Found at i:95780052 original size:46 final size:46
Alignment explanation
Indices: 95779980--95780071 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
95779970 TTGATGTTGC
*
95779980 CATAAAAGGGAAAAATGATCAGCATGTCATAAAACATAATAATTTT
1 CATAAAAGGGAAAAATGATCAGCATGTCATAAAACAAAATAATTTT
*
95780026 CATAGAAGGGAAAAATGATCAGCATGTCATAAAACAAAATAATTTT
1 CATAAAAGGGAAAAATGATCAGCATGTCATAAAACAAAATAATTTT
95780072 GGAAAAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.50, C:0.11, G:0.14, T:0.25
Consensus pattern (46 bp):
CATAAAAGGGAAAAATGATCAGCATGTCATAAAACAAAATAATTTT
Found at i:95782619 original size:30 final size:30
Alignment explanation
Indices: 95782585--95782644 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
95782575 TATTTTATTA
95782585 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
95782615 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
95782645 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:95794577 original size:34 final size:34
Alignment explanation
Indices: 95794524--95794588 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
95794514 TGAACAGTCT
95794524 GGCCTTAAGCCCATAACAGTAGCAATATCAGTGTA
1 GGCCTTAAGCCCATAACAGTA-CAATATCAGTGTA
*
95794559 GGCCTT-AGCCCA-ATACAGTACAGTATCAGT
1 GGCCTTAAGCCCATA-ACAGTACAATATCAGT
95794589 AATGCACAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 10 0.36
34 12 0.43
35 6 0.21
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (34 bp):
GGCCTTAAGCCCATAACAGTACAATATCAGTGTA
Found at i:95795778 original size:28 final size:28
Alignment explanation
Indices: 95795738--95795793 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
95795728 AACCACCATA
95795738 GAAGGAGATGCCAAATCATGTTATGAAT
1 GAAGGAGATGCCAAATCATGTTATGAAT
95795766 GAAGGAGATGCCAAATCATGTTATGAAT
1 GAAGGAGATGCCAAATCATGTTATGAAT
95795794 ATAGCTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (28 bp):
GAAGGAGATGCCAAATCATGTTATGAAT
Found at i:95796903 original size:8 final size:8
Alignment explanation
Indices: 95796890--95796917 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
95796880 GAGGTTAATT
95796890 TGTAAAAA
1 TGTAAAAA
95796898 TGTAAAAA
1 TGTAAAAA
95796906 TGTAAAAA
1 TGTAAAAA
95796914 TGTA
1 TGTA
95796918 GAGTTAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (8 bp):
TGTAAAAA
Found at i:95797508 original size:43 final size:43
Alignment explanation
Indices: 95797413--95797514 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
95797403 ACCGAGATGT
* * * *
95797413 GATTACATGTAAGACCATGTTTGAGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTAATGA
* *
95797456 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGAGACATTGGCATCG-TAATGA
*
95797499 GATTTCGTGTAAGACC
1 GATTACGTGTAAGACC
95797515 CTATCTAGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 48 0.94
44 3 0.06
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTAATGA
Found at i:95802660 original size:46 final size:46
Alignment explanation
Indices: 95802593--95802808 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
95802583 GGCAACCTGA
95802593 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
95802639 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
95802685 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
95802731 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
95802777 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
95802809 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:95802788 original size:138 final size:130
Alignment explanation
Indices: 95802543--95802808 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
95802533 AGTGTGCTCT
*
95802543 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
95802608 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
95802673 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
95802738 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
95802803 ATGGCA
123 ATGGCA
95802809 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:95805935 original size:55 final size:54
Alignment explanation
Indices: 95805816--95805957 Score: 160
Period size: 55 Copynumber: 2.6 Consensus size: 54
95805806 AACACGGGTT
* * * * *
95805816 GTGGGCGAACCTACCAAAATAGCACGGGCGTGCAACACGCCCGTGCCTTAAACCC
1 GTGGGCGAACCTATCAAATTAACACGGGCGTGCAACACGCCCGTGCC-TAAAACA
* * * *
95805871 GTGGCCGAACCTGTCAAATTAACACGAGCGTGCGACACGCCCGTGCC-AAGCAACA
1 GTGGGCGAACCTATCAAATTAACACGGGCGTGCAACACGCCCGTGCCTAA--AACA
*
95805926 GTGGGCGAACCTATTAAATTAACACGGGCGTG
1 GTGGGCGAACCTATCAAATTAACACGGGCGTG
95805958 GGCCTATATA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.03
55 70 0.97
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (54 bp):
GTGGGCGAACCTATCAAATTAACACGGGCGTGCAACACGCCCGTGCCTAAAACA
Found at i:95816472 original size:16 final size:16
Alignment explanation
Indices: 95816453--95816484 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95816443 AATTGTTTTA
95816453 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
95816469 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
95816485 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:95816740 original size:50 final size:50
Alignment explanation
Indices: 95816686--95817078 Score: 344
Period size: 50 Copynumber: 7.8 Consensus size: 50
95816676 CAAAGCTCTT
* **
95816686 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATATGACCTATCAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATC
* * * * * *
95816736 TGGTACACGTAGTAACCTTCACTTAGTACTACACACGTGACTTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATC
* * * * ** *
95816786 TGATACACGTAGTAGCATGCACTTAGTACTACACACATGATCGAAGTTAA-C
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATC
* * *
95816837 -GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATC
1 TG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATC
* * * * *
95816887 TGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACTTAACTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATC
* * * * *
95816937 TGATACACATAGTAGCCTACACTTATTACTACACACGTGATCGC-AGTTAA-A
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CTA-TCAATC
* * * * *
95816988 GGGTACATATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATC
* ** * * *
95817038 TGGTAAATGTAGTAGCCTACACTCAATACTACACACGTGAC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
95817079 TCACAACGGA
Statistics
Matches: 269, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
49 7 0.03
50 190 0.71
51 70 0.26
52 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATC
Found at i:95816870 original size:101 final size:100
Alignment explanation
Indices: 95816695--95816976 Score: 286
Period size: 101 Copynumber: 2.8 Consensus size: 100
95816685 TTGGTACGCA
* * * * * *
95816695 TAGTAGCC-TGCACTTAGTACTACACATATGACCT-ATC-AATCTGGTACACGTAGTAACCTTCA
1 TAGTA-CCATGCACTTAGTACTACACACATGA-CTGAACTAA-CTGATACACATAGTAGCCTACA
* *
95816757 CTTAGTACTACACACGTGACTTAACCATCTGATACACG
63 CTTAGTACTACACACGTGACCTAACAATCTGATACACG
* * * *
95816795 TAGTAGCATGCACTTAGTACTACACACATGA-TCGAAGTTAAC-GAGTACGCATAGTAGCCTGCA
1 TAGTACCATGCACTTAGTACTACACACATGACT-GAA-CTAACTGA-TACACATAGTAGCCTACA
* * * *
95816858 CTTAGTACTACACATGCGACCTATCAATCTGGTACACG
63 CTTAGTACTACACACGTGACCTAACAATCTGATACACG
* * * *
95816896 TAGTACCCTGCACTTAGTACTACACACGTGACTTAACTATCTGATACACATAGTAGCCTACACTT
1 TAGTACCATGCACTTAGTACTACACACATGACTGAACTAACTGATACACATAGTAGCCTACACTT
*
95816961 ATTACTACACACGTGA
66 AGTACTACACACGTGA
95816977 TCGCAGTTAA
Statistics
Matches: 148, Mismatches: 26, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
98 1 0.01
99 1 0.01
100 64 0.43
101 79 0.53
102 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (100 bp):
TAGTACCATGCACTTAGTACTACACACATGACTGAACTAACTGATACACATAGTAGCCTACACTT
AGTACTACACACGTGACCTAACAATCTGATACACG
Found at i:95816967 original size:151 final size:151
Alignment explanation
Indices: 95816688--95817079 Score: 586
Period size: 151 Copynumber: 2.6 Consensus size: 151
95816678 AAGCTCTTTG
**
95816688 GTACGCATAGTAGCCTGCACTTAGTACTACACATATGACCTATCAATCTGGTACACGTAGTAACC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAACC
* * *
95816753 TTCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCATGCACTTAGTACTAC
66 TACACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCATACACTTAGTACTAC
*
95816818 ACACATGATCGAAGTTAACGA
131 ACACATGATCGAAGTTAAAGA
*
95816839 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTACCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAACC
* * * *
95816904 TGCACTTAGTACTACACACGTGACTTAACTATCTGATACACATAGTAGCCTACACTTATTACTAC
66 TACACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCATACACTTAGTACTAC
* * *
95816969 ACACGTGATCGCAGTTAAAGG
131 ACACATGATCGAAGTTAAAGA
** * * * *
95816990 GTACATATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTTGGTAAATGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAACC
* *
95817055 TACACTCAATACTACACACGTGACT
66 TACACTTAGTACTACACACGTGACT
95817080 CACAACGGAT
Statistics
Matches: 219, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 219 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (151 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAACC
TACACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCATACACTTAGTACTAC
ACACATGATCGAAGTTAAAGA
Found at i:95816993 original size:101 final size:101
Alignment explanation
Indices: 95816888--95817077 Score: 245
Period size: 101 Copynumber: 1.9 Consensus size: 101
95816878 CTATCAATCT
* * * * *
95816888 GGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACTTAACTATCTGATACACATAGTAGC
1 GGTACACATAGTACCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATAAACATAGTAGC
* *
95816953 CTACACTTATTACTACACACGTGATCGCAGTTAAAG
66 CTACACTCAATACTACACACGTGATCGCAGTTAAAG
* * * * * * **
95816989 GGTACATATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTTGGTAAATGTAGTAGC
1 GGTACACATAGTACCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATAAACATAGTAGC
95817054 CTACACTCAATACTACACACGTGA
66 CTACACTCAATACTACACACGTGA
95817078 CTCACAACGG
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (101 bp):
GGTACACATAGTACCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATAAACATAGTAGC
CTACACTCAATACTACACACGTGATCGCAGTTAAAG
Found at i:95817722 original size:30 final size:30
Alignment explanation
Indices: 95817686--95817744 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
95817676 CAAAAATCAT
* *
95817686 ACTTTTACAAATTTTCATTTTGACCCCTAA
1 ACTTTTACAAATTTGCACTTTGACCCCTAA
* *
95817716 ACTTTTACATATTTGCACTTTGGCCCCTA
1 ACTTTTACAAATTTGCACTTTGACCCCTA
95817745 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.07, T:0.42
Consensus pattern (30 bp):
ACTTTTACAAATTTGCACTTTGACCCCTAA
Found at i:95820055 original size:15 final size:14
Alignment explanation
Indices: 95820021--95820080 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
95820011 TATAGATAAC
* *
95820021 AAGAAAACCAGGATT
1 AAGAAATCCAAGA-T
*
95820036 AAGAAGTCCAAGAT
1 AAGAAATCCAAGAT
95820050 AGAGAAATCCAAGAT
1 A-AGAAATCCAAGAT
95820065 AAGGAAATCCAAGAT
1 AA-GAAATCCAAGAT
95820080 A
1 A
95820081 CAATATCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
14 3 0.08
15 36 0.92
ACGTcount: A:0.53, C:0.13, G:0.20, T:0.13
Consensus pattern (14 bp):
AAGAAATCCAAGAT
Found at i:95820056 original size:30 final size:30
Alignment explanation
Indices: 95820022--95820080 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
95820012 ATAGATAACA
* *
95820022 AGAAAACCAGGATTAA-GAAGTCCAAGATAG
1 AGAAAACCAAGA-TAAGGAAATCCAAGATAG
*
95820052 AGAAATCCAAGATAAGGAAATCCAAGATA
1 AGAAAACCAAGATAAGGAAATCCAAGATA
95820081 CAATATCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.53, C:0.14, G:0.20, T:0.14
Consensus pattern (30 bp):
AGAAAACCAAGATAAGGAAATCCAAGATAG
Found at i:95824924 original size:16 final size:16
Alignment explanation
Indices: 95824905--95824936 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95824895 AATTGTTTTA
95824905 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
95824921 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
95824937 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:95825190 original size:50 final size:50
Alignment explanation
Indices: 95825136--95825530 Score: 362
Period size: 50 Copynumber: 7.9 Consensus size: 50
95825126 ATCGAAGCTC
** * *
95825136 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * * *
95825186 TCTGGTACACATAGTAGCCTTCACGTAGTGCTACACACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * ** *
95825236 TCTGATACACGTAGTAGCATACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
95825288 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTACCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * * *
95825337 TCTGGTACACGTAGTACCCTGCACTTAGTACTACATACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** ** *
95825387 TCTGATACACGTAGTAGCCCACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * * *
95825439 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
95825488 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
95825531 TCACAACAGA
Statistics
Matches: 267, Mismatches: 72, Indels: 12
0.76 0.21 0.03
Matches are distributed among these distances:
49 4 0.01
50 190 0.71
51 71 0.27
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:95825323 original size:101 final size:100
Alignment explanation
Indices: 95825147--95825530 Score: 290
Period size: 101 Copynumber: 3.8 Consensus size: 100
95825137 CTGGTATGCA
* * * *
95825147 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATTAATCTGGTACACATAGTAGCCTTCACGT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAATCGGGTACACATAGTAGCCTGCACGT
* *
95825212 AGTGCTACACACATGACTTAACC-ATCTGATACACG
66 AGTACTACACACATGACCT-ACCAATCTGATACACG
* * * *
95825247 TAGTAGCATACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTAATCGGGTACACATAGTAGCCTGCAC
* ** *
95825311 TTAGTACTACACATGTGACCTACCAATCTGGTACACG
64 GTAGTACTACACACATGACCTACCAATCTGATACACG
* * * * ** * * * ** *
95825348 TAGTACCCTGCACTTAGTACTACATACATGACTTAA-CCATCTGATACACGTAGTAGCCCACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC-CAATTAATCGGGTACACATAGTAGCCTGCACG
* ** ** * * * *
95825412 TAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCA
65 TAGTACTACACACATGA-CCTA-CCAATCTGATACACG
* * * * * * * *
95825449 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAGTCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAATCGGGTACACATAGTAGCCTGCACGT
*
95825514 AGTACTACACACGTGAC
66 AGTACTACACACATGAC
95825531 TCACAACAGA
Statistics
Matches: 228, Mismatches: 48, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
99 1 0.00
100 68 0.30
101 153 0.67
102 6 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAATCGGGTACACATAGTAGCCTGCACGT
AGTACTACACACATGACCTACCAATCTGATACACG
Found at i:95825397 original size:151 final size:151
Alignment explanation
Indices: 95825139--95825531 Score: 660
Period size: 151 Copynumber: 2.6 Consensus size: 151
95825129 GAAGCTCTCT
* * *
95825139 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATTAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * *
95825204 CTTCACGTAGTGCTACACACATGACTTAACCATCTGATACACGTAGTAGCATACACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCACACACTTAGTACTA
95825269 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
95825290 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTACCAATCTGGTACACGTAGTACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* *
95825355 CTGCACTTAGTACTACATACATGACTTAACCATCTGATACACGTAGTAGCCCACACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCACACACTTAGTACTA
95825420 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
95825441 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAGTCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
*
95825506 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACATGACT
95825532 CACAACAGAT
Statistics
Matches: 225, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 225 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCACACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:95826204 original size:30 final size:30
Alignment explanation
Indices: 95826147--95826205 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
95826137 AAAAAATCAT
* *
95826147 ACTTTTACAAATTTGCATTTCGACCCCTAA
1 ACTTTCACAAATTTGCATTTAGACCCCTAA
*
95826177 ACTTTCACATATTTGCACTTTAG-CCCCTA
1 ACTTTCACAAATTTGCA-TTTAGACCCCTA
95826206 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.37
Consensus pattern (30 bp):
ACTTTCACAAATTTGCATTTAGACCCCTAA
Found at i:95830020 original size:29 final size:29
Alignment explanation
Indices: 95829986--95830117 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
95829976 TACTCGATTT
** * *
95829986 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
95830015 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
95830044 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
95830073 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
95830102 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
95830118 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:95832830 original size:17 final size:17
Alignment explanation
Indices: 95832810--95832843 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
95832800 AGCCGACTTA
95832810 GTCAGTCTATCGACAAC
1 GTCAGTCTATCGACAAC
95832827 GTCAGTCTATCGACAAC
1 GTCAGTCTATCGACAAC
95832844 ACCCAAATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (17 bp):
GTCAGTCTATCGACAAC
Found at i:95837764 original size:29 final size:29
Alignment explanation
Indices: 95837730--95837861 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
95837720 TACTCGATTT
** * *
95837730 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
95837759 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
95837788 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
95837817 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
95837846 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
95837862 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:95845121 original size:29 final size:29
Alignment explanation
Indices: 95845079--95845139 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
95845069 TAAAATAGAG
95845079 TAAGCATTACATATCTTAGTAAGTTCGTA
1 TAAGCATTACATATCTTAGTAAGTTCGTA
95845108 TAAGCATTACATATCTTAGTAAGTTCGTA
1 TAAGCATTACATATCTTAGTAAGTTCGTA
95845137 TAA
1 TAA
95845140 CGGAAACTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (29 bp):
TAAGCATTACATATCTTAGTAAGTTCGTA
Found at i:95846215 original size:20 final size:20
Alignment explanation
Indices: 95846186--95846230 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
95846176 AGCACATATA
* *
95846186 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
95846206 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
95846226 TTCAT
1 TTCAT
95846231 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:95847970 original size:48 final size:48
Alignment explanation
Indices: 95847889--95848074 Score: 223
Period size: 48 Copynumber: 3.9 Consensus size: 48
95847879 ACTCGACAGT
* *
95847889 CTCGCACCCTAAGTGCCAATATCATGGCTCGAAGCCAAATCAATAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
* * *
95847937 CTTGCACCCGAAGTGCCAATATCGA-GTCCCGAAGCCAAATCAATGTAA-
1 CTCGCACCCGAAGTGCCAATATC-ATGGCCCGAAGCCAAATCAAT-AAAG
* * *
95847985 CTCGCACCTGAAGTGCCAATATCATGGCCTGAAGCCAAATCAATGAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
* * * * *
95848033 CTCACACCCGAGGTACCGATATCATGGCCCGAACCCAAATCA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCA
95848075 GTGAATTCCC
Statistics
Matches: 117, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
47 3 0.03
48 111 0.95
49 3 0.03
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
Found at i:95848055 original size:96 final size:96
Alignment explanation
Indices: 95847889--95848074 Score: 252
Period size: 96 Copynumber: 1.9 Consensus size: 96
95847879 ACTCGACAGT
** *
95847889 CTCGCACCCTAAGTGCCAATATCATGGCTCGAAGCCAAATCAATAAAGCTTGCACCCGAAGTGCC
1 CTCGCACCCTAAGTGCCAATATCATGGCTCGAAGCCAAATCAATAAAGCTCACACCCGAAGTACC
* *
95847954 AATATCGA-GTCCCGAAGCCAAATCAATGTAA
66 AATATC-ATGGCCCGAACCCAAATCAATGTAA
* *
95847985 CTCGCA-CCTGAAGTGCCAATATCATGGC-CTGAAGCCAAATCAATGAAGCTCACACCCGAGGTA
1 CTCGCACCCT-AAGTGCCAATATCATGGCTC-GAAGCCAAATCAATAAAGCTCACACCCGAAGTA
*
95848048 CCGATATCATGGCCCGAACCCAAATCA
64 CCAATATCATGGCCCGAACCCAAATCA
95848075 GTGAATTCCC
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
95 5 0.06
96 74 0.94
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (96 bp):
CTCGCACCCTAAGTGCCAATATCATGGCTCGAAGCCAAATCAATAAAGCTCACACCCGAAGTACC
AATATCATGGCCCGAACCCAAATCAATGTAA
Found at i:95850139 original size:66 final size:66
Alignment explanation
Indices: 95850068--95850193 Score: 175
Period size: 66 Copynumber: 1.9 Consensus size: 66
95850058 CCCGTGTGAA
*
95850068 CAGGCCGTGTCAAAA-CAGGGCATACATACTGACTT-GTCCACACAGCCACAAGACACGCCCATG
1 CAGGCCGTGTCAAAATCAGGG-AGAC-TACTGACTTGGTCCACACAGCCACAAGACACGCCCATG
95850131 TGT
64 TGT
* * * *
95850134 CAGGCCGTGTGAAAATTAGGGAGACTACTGACTTGGTTCACACGGCCACAAGACACGCCC
1 CAGGCCGTGTCAAAATCAGGGAGACTACTGACTTGGTCCACACAGCCACAAGACACGCCC
95850194 GCGTGTCTAG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
65 9 0.17
66 40 0.75
67 4 0.08
ACGTcount: A:0.29, C:0.30, G:0.24, T:0.17
Consensus pattern (66 bp):
CAGGCCGTGTCAAAATCAGGGAGACTACTGACTTGGTCCACACAGCCACAAGACACGCCCATGTG
T
Found at i:95851381 original size:43 final size:42
Alignment explanation
Indices: 95851273--95851416 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 42
95851263 GCTAATGCCT
95851273 CAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTGTCC
1 CAGACGTGGTCTTACATGTAAATCAAATA-CGATGCCAC-GTCC
***
95851316 CAGAAAAGGTCTTACATG-AAATCAAATACGATGCCAACGTCC
1 CAGACGTGGTCTTACATGTAAATCAAATACGATGCC-ACGTCC
* * *
95851358 CAGAGGTGGTCCTACATGTAAATCAGAAGT-TGATGCCACGTCC
1 CAGACGTGGTCTTACATGTAAATCA-AA-TACGATGCCACGTCC
*
95851401 CAAACGTGGTCTTACA
1 CAGACGTGGTCTTACA
95851417 CGATAACACA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
42 25 0.29
43 51 0.60
44 8 0.09
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (42 bp):
CAGACGTGGTCTTACATGTAAATCAAATACGATGCCACGTCC
Found at i:95857382 original size:13 final size:13
Alignment explanation
Indices: 95857364--95857390 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
95857354 GCTCAGCAGG
95857364 GACACGCCCGTGT
1 GACACGCCCGTGT
95857377 GACACGCCCGTGT
1 GACACGCCCGTGT
95857390 G
1 G
95857391 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:95859832 original size:48 final size:48
Alignment explanation
Indices: 95859756--95859933 Score: 268
Period size: 48 Copynumber: 3.7 Consensus size: 48
95859746 GTACCCTAAA
*
95859756 TGCCAATATCATGGCCCAAAGCCAAATCAATGAAGCTCGCACCCGAAG
1 TGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCGAAG
* *
95859804 TGCCGATATCATAGCCCGAAGCCAAATCAATGTAA-CTCGCACCCGAAG
1 TGCCAATATCATGGCCCGAAGCCAAATCAATG-AAGCTCGCACCCGAAG
* * * *
95859852 TACCAATATCATGGCTCGAAGCCAAATCAATAAAGCCCGCACCCGAAG
1 TGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCGAAG
*
95859900 TGCCGATATCATGGCCCGAAGCCAAATCAATGAA
1 TGCCAATATCATGGCCCGAAGCCAAATCAATGAA
95859934 TTCCTTAATG
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.02
48 111 0.97
49 2 0.02
ACGTcount: A:0.35, C:0.30, G:0.19, T:0.16
Consensus pattern (48 bp):
TGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCGAAG
Found at i:95859922 original size:96 final size:96
Alignment explanation
Indices: 95859758--95859931 Score: 303
Period size: 96 Copynumber: 1.8 Consensus size: 96
95859748 ACCCTAAATG
* *
95859758 CCAATATCATGGCCCAAAGCCAAATCAATGAAGCTCGCACCCGAAGTGCCGATATCATAGCCCGA
1 CCAATATCATGGCCCAAAGCCAAATCAATAAAGCCCGCACCCGAAGTGCCGATATCATAGCCCGA
95859823 AGCCAAATCAATGTAACTCGCACCCGAAGTA
66 AGCCAAATCAATGTAACTCGCACCCGAAGTA
* * *
95859854 CCAATATCATGGCTCGAAGCCAAATCAATAAAGCCCGCACCCGAAGTGCCGATATCATGGCCCGA
1 CCAATATCATGGCCCAAAGCCAAATCAATAAAGCCCGCACCCGAAGTGCCGATATCATAGCCCGA
95859919 AGCCAAATCAATG
66 AGCCAAATCAATG
95859932 AATTCCTTAA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.35, C:0.31, G:0.18, T:0.16
Consensus pattern (96 bp):
CCAATATCATGGCCCAAAGCCAAATCAATAAAGCCCGCACCCGAAGTGCCGATATCATAGCCCGA
AGCCAAATCAATGTAACTCGCACCCGAAGTA
Found at i:95862473 original size:122 final size:122
Alignment explanation
Indices: 95862256--95862503 Score: 496
Period size: 122 Copynumber: 2.0 Consensus size: 122
95862246 AGAAACATTT
95862256 ATGTAATAGTTTTACCACATTGCGTTTACTTCCCAAGTCAAAAACAAATAATAAATCACCAATGA
1 ATGTAATAGTTTTACCACATTGCGTTTACTTCCCAAGTCAAAAACAAATAATAAATCACCAATGA
95862321 CCTATTACTAGAGGCTCACTTAGATCAATCCCTTGAAATCACACCGCTCACACCGAA
66 CCTATTACTAGAGGCTCACTTAGATCAATCCCTTGAAATCACACCGCTCACACCGAA
95862378 ATGTAATAGTTTTACCACATTGCGTTTACTTCCCAAGTCAAAAACAAATAATAAATCACCAATGA
1 ATGTAATAGTTTTACCACATTGCGTTTACTTCCCAAGTCAAAAACAAATAATAAATCACCAATGA
95862443 CCTATTACTAGAGGCTCACTTAGATCAATCCCTTGAAATCACACCGCTCACACCGAA
66 CCTATTACTAGAGGCTCACTTAGATCAATCCCTTGAAATCACACCGCTCACACCGAA
95862500 ATGT
1 ATGT
95862504 TACTAATTTG
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 126 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.27
Consensus pattern (122 bp):
ATGTAATAGTTTTACCACATTGCGTTTACTTCCCAAGTCAAAAACAAATAATAAATCACCAATGA
CCTATTACTAGAGGCTCACTTAGATCAATCCCTTGAAATCACACCGCTCACACCGAA
Found at i:95872464 original size:50 final size:50
Alignment explanation
Indices: 95872405--95872692 Score: 317
Period size: 50 Copynumber: 5.7 Consensus size: 50
95872395 TGAGAACACA
* ** *
95872405 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGTCACG
* * * ***
95872455 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGGATCGATAGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGTCACG
* * * ** * *
95872505 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGA--TAGGTCACG
* * * *
95872556 TGTGTAGTACTAAGTGCAGGCTATTACATGTATCAGATGGATAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGTCACG
* * *
95872606 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGTCACG
* *
95872656 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
95872693 GAGCTTCGGT
Statistics
Matches: 195, Mismatches: 40, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
49 2 0.01
50 157 0.81
51 34 0.17
52 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGTCACG
Found at i:95872610 original size:101 final size:100
Alignment explanation
Indices: 95872401--95872681 Score: 319
Period size: 101 Copynumber: 2.8 Consensus size: 100
95872391 GTTGTGAGAA
* ** ** *
95872401 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTTAGGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAGATCACGTGTGTAGTACT
* * *
95872466 AAGTGCAGGCTACTACGTGTAGCGGATCGATAGGT
66 AAGTGCAGGCTACTACATGTAGCAGATCGATAAGT
** * * *
95872501 CGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-ACTTAGATCACGTGTGTAGTAC
* * *
95872566 TAAGTGCAGGCTATTACATGTATCAGATGGATAAGT
65 TAAGTGCAGGCTACTACATGTAGCAGATCGATAAGT
* * * *** * * *
95872602 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAGATCACGTGTGTAGTACT
95872667 AAGTGCAGGCTACTA
66 AAGTGCAGGCTACTA
95872682 TGCGTACCAG
Statistics
Matches: 148, Mismatches: 32, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
100 65 0.44
101 83 0.56
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAGATCACGTGTGTAGTACT
AAGTGCAGGCTACTACATGTAGCAGATCGATAAGT
Found at i:95872679 original size:151 final size:151
Alignment explanation
Indices: 95872405--95872689 Score: 480
Period size: 151 Copynumber: 1.9 Consensus size: 151
95872395 TGAGAACACA
** * * *
95872405 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
* * *
95872470 GCAGGCTACTACGTGTAGCGGATCGATAGGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAGATCGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
95872535 TACCCGTTAACTTCGATCACG
131 TACCCGTTAACTTCGATCACG
*
95872556 TGTGTAGTACTAAGTGCAGGCTATTACATGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
*
95872621 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAGATCGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
95872686 TACC
131 TACC
95872690 AGAGAGCTTC
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 124 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATCGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCCGTTAACTTCGATCACG
Found at i:95873561 original size:179 final size:179
Alignment explanation
Indices: 95873251--95873587 Score: 498
Period size: 179 Copynumber: 1.9 Consensus size: 179
95873241 TCCGAGATCT
* * *
95873251 GTACCATGAGATAAATAATTTTTAATGAAGAAAGATTGGAACTATCGGACAGTGAAACAGGTGTA
1 GTACCAAGAGATAAATAATTTTTAATAAAGAAAGATTGGAACTATCGGACAGTGAAACAGGGGTA
** * *
95873316 TCTTTAATGAATAAACTGTACTAATTGACTAAACAAAAAATTCTGAAATTTTTATTGTATGAATA
66 AATTTAATGAATAAACTGTACTAATTGACTAAACAAAAAATTCTGAAAATTTTATTGTAAGAATA
*
95873381 TATGTGAG-GCTAGTTTTTTGGAAAATTAGATTTTTTAATTTTGAGTCCC
131 TATGTGAGTG-TAGTTTTTTGAAAAATTAGATTTTTTAATTTTGAGTCCC
* * * * * *
95873430 GTACCAAGAGATAAATAATTTTTAGTAAAGAGAGGTTGGAATTGTTGGACAGTGAAACAGGGGTA
1 GTACCAAGAGATAAATAATTTTTAATAAAGAAAGATTGGAACTATCGGACAGTGAAACAGGGGTA
*
95873495 AATTTAATGAATAAACTGTACTAATTGACTAAACCAAAAATTCTGAAAATTTTA-TGATAAGAAT
66 AATTTAATGAATAAACTGTACTAATTGACTAAACAAAAAATTCTGAAAATTTTATTG-TAAGAAT
*
95873559 ATATGTGAGTGTAGTTTTTTTAAAAATTA
130 ATATGTGAGTGTAGTTTTTTGAAAAATTA
95873588 ACGGATCTTA
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
178 2 0.01
179 137 0.98
180 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (179 bp):
GTACCAAGAGATAAATAATTTTTAATAAAGAAAGATTGGAACTATCGGACAGTGAAACAGGGGTA
AATTTAATGAATAAACTGTACTAATTGACTAAACAAAAAATTCTGAAAATTTTATTGTAAGAATA
TATGTGAGTGTAGTTTTTTGAAAAATTAGATTTTTTAATTTTGAGTCCC
Found at i:95886743 original size:5 final size:5
Alignment explanation
Indices: 95886733--95886757 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
95886723 TAGGAAGAAA
95886733 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
95886758 AAATTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:95887314 original size:15 final size:14
Alignment explanation
Indices: 95887258--95887391 Score: 69
Period size: 15 Copynumber: 9.1 Consensus size: 14
95887248 TTATTATGTT
*
95887258 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
95887272 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
95887286 TACTATTATTATTTA
1 T-CTATTTTTATTTA
95887301 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
95887316 TCTATTTATATTTC
1 TCTATTTTTATTTA
*
95887330 TACTATTATTATATTTC
1 T-CTATT-TT-TATTTA
*
95887347 TACTATTATTATATT-
1 T-CTATTTTTAT-TTA
95887362 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
*
95887377 TCTATTTCTATTTA
1 TCTATTTTTATTTA
95887391 T
1 T
95887392 ATACTAATAT
Statistics
Matches: 98, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
12 6 0.06
13 4 0.04
14 24 0.24
15 38 0.39
16 6 0.06
17 20 0.20
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.63
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:95887327 original size:29 final size:28
Alignment explanation
Indices: 95887258--95887328 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
95887248 TTATTATGTT
95887258 TCTATTTATATTTATTTTGTTATTCTAA
1 TCTATTTATATTTATTTTGTTATTCTAA
*
95887286 TACTA-TTATTATTTATCTAATTTTTATT-T-A
1 T-CTATTTA-TATTTAT-T--TTGTTATTCTAA
95887316 TCTATTTATATTT
1 TCTATTTATATTT
95887329 CTACTATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
28 4 0.11
29 18 0.50
30 6 0.17
31 1 0.03
32 7 0.19
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (28 bp):
TCTATTTATATTTATTTTGTTATTCTAA
Found at i:95887343 original size:17 final size:17
Alignment explanation
Indices: 95887321--95887380 Score: 106
Period size: 17 Copynumber: 3.6 Consensus size: 17
95887311 ATTTATCTAT
95887321 TTATATTTCTACTATTA
1 TTATATTTCTACTATTA
95887338 TTATATTTCTACTATTA
1 TTATATTTCTACTATTA
95887355 TTATATTTCTA-T-TTA
1 TTATATTTCTACTATTA
95887370 TTATATTTCTA
1 TTATATTTCTA
95887381 TTTCTATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
15 14 0.33
16 1 0.02
17 28 0.65
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATATTTCTACTATTA
Found at i:95887406 original size:61 final size:59
Alignment explanation
Indices: 95887286--95887419 Score: 143
Period size: 61 Copynumber: 2.3 Consensus size: 59
95887276 GTTATTCTAA
* * *
95887286 TACTATTATTATTTATCTAATTTTTATTTATCTATTTATATTTCTACTATTATTATATTT
1 TACTATTATTATTT-TCTAATTTTTATTTATCTATTTATATTTATACTACTAATATATTT
*
95887346 CTACTATTATTATATTTCT-ATTTATTATATT-TCTATTTCTATTTATA-TACTAATATTATTT
1 -TACTATTATTAT-TTTCTAATTT-TTAT-TTATCTATTTATATTTATACTACTAATA-TATTT
95887407 T-C-ATTATTATTTT
1 TACTATTATTATTTT
95887420 TCTTATATAT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
57 3 0.05
58 8 0.12
59 1 0.02
60 11 0.17
61 38 0.58
62 4 0.06
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (59 bp):
TACTATTATTATTTTCTAATTTTTATTTATCTATTTATATTTATACTACTAATATATTT
Found at i:95888526 original size:20 final size:20
Alignment explanation
Indices: 95888501--95888540 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
95888491 AAATCAGGAG
95888501 ATAGGCTACAATTGTAACAC
1 ATAGGCTACAATTGTAACAC
95888521 ATAGGCTACAATTGTAACAC
1 ATAGGCTACAATTGTAACAC
95888541 CCCCTACCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (20 bp):
ATAGGCTACAATTGTAACAC
Found at i:95889201 original size:39 final size:39
Alignment explanation
Indices: 95889158--95889242 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
95889148 CGAAATCCAG
*
95889158 CTGAAGCACATAAGTGCTAAACGGCAGCCCGAAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAA
*
95889197 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAA
95889236 CTGAAGC
1 CTGAAGC
95889243 TCATCAGAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.35, C:0.25, G:0.27, T:0.13
Consensus pattern (39 bp):
CTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAA
Found at i:95889224 original size:21 final size:21
Alignment explanation
Indices: 95889160--95889224 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
95889150 AAATCCAGCT
95889160 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
* ** *
95889181 GCAGC-CCGAAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
95889199 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
95889220 GAAGC
1 GAAGC
95889225 CCGGAGGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 7 0.21
19 7 0.21
20 7 0.21
21 12 0.36
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:95891865 original size:38 final size:38
Alignment explanation
Indices: 95891791--95891943 Score: 216
Period size: 38 Copynumber: 4.0 Consensus size: 38
95891781 GAATCCAGTC
* * * *
95891791 ACCAGCACAAAGTCTGCGGGACTTTAAGCTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGAC-TTAA-CCCGGATATATT
* * * *
95891831 ACCGGCACTAAGCTTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
95891869 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
95891907 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATAT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATAT
95891944 ATCGAGTGCT
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
38 81 0.79
39 4 0.04
40 17 0.17
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
Found at i:95898050 original size:125 final size:126
Alignment explanation
Indices: 95897790--95898050 Score: 305
Period size: 124 Copynumber: 2.1 Consensus size: 126
95897780 GAGTATGAGC
* *
95897790 TTGCCTTCTATTTAATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTCGGATATTTAGAT
1 TTGCCTT-TATTTAATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGAT
** * * **
95897855 CAAACGGGAAATCGAAACCCATACGTTAAGGCACGACTACTCTAATTTCTAAATATGGAATA
65 CAAACGAAAAACCGAAACCCATACGTTAAGGCACGACTACTCGAATTTCTAAATACCGAATA
** * * *
95897917 TTATCTTTATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATCGGTTACTTAGATC
1 TTGCCTTTATTTAATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATC
* * * *
95897980 AAACTAAAAACCGAAACCCAGTACGTT-AGGACACGATTTCTCGAATTT-TCAAGTACCGAATA
66 AAACGAAAAACCGAAACCCA-TACGTTAAGG-CACGACTACTCGAATTTCT-AAATACCGAATA
95898042 TTGCCTTTA
1 TTGCCTTTA
95898051 CTTGAAAAAT
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
124 42 0.38
125 39 0.35
126 26 0.23
127 5 0.04
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (126 bp):
TTGCCTTTATTTAATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATC
AAACGAAAAACCGAAACCCATACGTTAAGGCACGACTACTCGAATTTCTAAATACCGAATA
Found at i:95898233 original size:3 final size:3
Alignment explanation
Indices: 95898214--95898679 Score: 171
Period size: 3 Copynumber: 155.0 Consensus size: 3
95898204 AGGACAGATC
* * * * * *
95898214 ATA AAA ATA ATA GTA ATA ATA ATT TTA A-A A-A ATA ATG GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
95898260 TTA A-A AAA AGTA A-A TATA ATA ATG ATA ATA GTG TTA ATA ATA ATA
1 ATA ATA ATA A-TA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
95898305 ATA ATA ATA ATA ATA A-A CA-A ACGA CATA TTA ATG ATA AT- ATA A-A
1 ATA ATA ATA ATA ATA ATA -ATA A-TA -ATA ATA ATA ATA ATA ATA ATA
* *
95898349 ATA ATG ATA ATA ATA ACGGA AGTA ATGA A-A ATA ATA ATA ATA GA-A
1 ATA ATA ATA ATA ATA A--TA A-TA AT-A ATA ATA ATA ATA ATA -ATA
* * * * *
95898394 ACA ATA GTA ATA A-A AGTA ATA ATA A-A ATA GAAA ATA ACA ATG ATA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * *
95898439 CATTA ATA ATA ATA ATA ATA ATA ATA TTA AAA AAA ATA A-A ATA ATA
1 -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
95898485 CT- ATA TTG ATA AAA ATA ATA ATA GTA GGTTA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA
* * * * * * * *
95898531 AAA AGGTA A-A AAA ATA ATA A-A ATA ATA AAA ACA CTA TTA CGTTA CTA
1 ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA
* * * * * * * *
95898578 CTA ATC ATA ATA A-A A-A AAA AGA A-A ACA GTA ATA GT- ATA TAGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
95898620 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95898668 ATA ATA ATA ATA
1 ATA ATA ATA ATA
95898680 TTCCCTTCTA
Statistics
Matches: 349, Mismatches: 77, Indels: 74
0.70 0.15 0.15
Matches are distributed among these distances:
2 34 0.10
3 284 0.81
4 19 0.05
5 12 0.03
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:95898268 original size:25 final size:25
Alignment explanation
Indices: 95898216--95898282 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
95898206 GACAGATCAT
**
95898216 AAAAATAATAGTAATAATAATTTTA
1 AAAAATAATAGTAATAATAATTAAA
*
95898241 AAAAATAATGGTAATAAT-ATTAAA
1 AAAAATAATAGTAATAATAATTAAA
*
95898265 AAAAGTAAATA-TAATAAT
1 AAAAAT-AATAGTAATAAT
95898283 GATAATAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 16 0.44
25 20 0.56
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (25 bp):
AAAAATAATAGTAATAATAATTAAA
Found at i:95898519 original size:23 final size:21
Alignment explanation
Indices: 95898445--95898531 Score: 66
Period size: 23 Copynumber: 3.9 Consensus size: 21
95898435 GATACATTAA
*
95898445 TAATAATAATAATAATAATAT
1 TAATAAAAATAATAATAATAT
*
95898466 TAAAAAAAATAAAATAATACTATAT
1 TAATAAAAAT--AATAATA--ATAT
* *
95898491 TGATAAAAATAATAATAGTAGGT
1 TAATAAAAATAATAATAATA--T
* *
95898514 TAATAATAATAGTAATAA
1 TAATAAAAATAATAATAA
95898532 AAAGGTAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
21 10 0.20
23 29 0.57
25 12 0.24
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (21 bp):
TAATAAAAATAATAATAATAT
Found at i:95899585 original size:41 final size:40
Alignment explanation
Indices: 95899539--95899624 Score: 109
Period size: 41 Copynumber: 2.1 Consensus size: 40
95899529 CAAATACATT
95899539 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * **
95899580 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
95899620 TAAAA
1 TAAAA
95899625 AGTGATTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 9 0.23
41 30 0.77
ACGTcount: A:0.66, C:0.09, G:0.03, T:0.21
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:95900716 original size:31 final size:31
Alignment explanation
Indices: 95900681--95900781 Score: 109
Period size: 29 Copynumber: 3.4 Consensus size: 31
95900671 AAAAATAAAA
95900681 AAATTACATTTTGACCCCTAAACTTTTCTTT
1 AAATTACATTTTGACCCCTAAACTTTTCTTT
* * * * *
95900712 AAATTTCACTTAGACCCTTAAAC-TTTCCTT
1 AAATTACATTTTGACCCCTAAACTTTTCTTT
* **
95900742 AAATTACATTTT-AACCCTAAA-TTTTCTAA
1 AAATTACATTTTGACCCCTAAACTTTTCTTT
95900771 AAATTACATTT
1 AAATTACATTT
95900782 AGCCCCAGAA
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
29 22 0.39
30 15 0.27
31 19 0.34
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.43
Consensus pattern (31 bp):
AAATTACATTTTGACCCCTAAACTTTTCTTT
Found at i:95900759 original size:30 final size:29
Alignment explanation
Indices: 95900681--95900781 Score: 89
Period size: 30 Copynumber: 3.4 Consensus size: 29
95900671 AAAAATAAAA
* *
95900681 AAATTACATTTTGACCCCTAAACTTTTCTTT
1 AAATTACATTTT-AACCCTAAAC-TTTCCTT
* *
95900712 AAATTTCA-CTTAGACCCTTAAACTTTCCTT
1 AAATTACATTTTA-ACCC-TAAACTTTCCTT
* *
95900742 AAATTACATTTTAACCCTAAA-TTTTCTAA
1 AAATTACATTTTAACCCTAAACTTTCCT-T
95900771 AAATTACATTT
1 AAATTACATTT
95900782 AGCCCCAGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
28 5 0.09
29 16 0.28
30 22 0.38
31 15 0.26
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.43
Consensus pattern (29 bp):
AAATTACATTTTAACCCTAAACTTTCCTT
Found at i:95901570 original size:16 final size:16
Alignment explanation
Indices: 95901549--95901598 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
95901539 TTTTATTTGT
*
95901549 AATTGGTCTAAACCAA
1 AATTGGTCTAAACAAA
95901565 AATTGGTCTAAACAAA
1 AATTGGTCTAAACAAA
*
95901581 AATTGGTCTTAA-AAA
1 AATTGGTCTAAACAAA
95901596 AAT
1 AAT
95901599 AAAAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 6 0.19
16 26 0.81
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (16 bp):
AATTGGTCTAAACAAA
Found at i:95901845 original size:17 final size:17
Alignment explanation
Indices: 95901815--95901847 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
95901805 CTATATTATA
95901815 TACATATATATATTTTG
1 TACATATATATATTTTG
95901832 TACATATCAT-TATTTT
1 TACATAT-ATATATTTT
95901848 ATATTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (17 bp):
TACATATATATATTTTG
Found at i:95904457 original size:24 final size:24
Alignment explanation
Indices: 95904414--95904463 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
95904404 TTCCTTTCTT
95904414 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTCCATACATTTGCA
*
95904438 TTGCATTGCATTGCAT-CATTTGCA
1 TTGCATT-CATTCCATACATTTGCA
95904462 TT
1 TT
95904464 AAACTTTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (24 bp):
TTGCATTCATTCCATACATTTGCA
Found at i:95912051 original size:146 final size:145
Alignment explanation
Indices: 95911771--95912370 Score: 709
Period size: 146 Copynumber: 4.0 Consensus size: 145
95911761 TGATGCTTTT
* *
95911771 ATTTCTGTTTT-AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* * *
95911835 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAACGTGTTGAGCCTCAAGACAC
66 TAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
95911900 ATTGAGGTATTTTCA
131 GTTGAGGTATTTTCA
** * *
95911915 ATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAAGACACGTTGAG
1 ATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* * *
95911980 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACA
65 GTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
95912045 CGTTGAGGTAATTTCA
130 CGTTGAGGTATTTTCA
* * * *
95912061 ATTTCTGTTTTC-AAAATTCAGCTTATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
95912125 TATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 TAATTTCAATTTCTG-TTTTC------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* *
95912190 AAGACATGCTGAGGTATTTTCA
124 AAGACACGTTGAGGTATTTTCA
* * ** * *
95912212 ATTTTTATCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGC
1 ATTTCTGT-TTTC----AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
* * *** *
95912277 TGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCGTATTGCGAGAGGCGAATTGAGCCTC
61 TGAGGTAATTTCAATTTCTGTT-TT-CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* **
95912342 AGGTCACACGCCGAGGTATTTTCA
124 AAG--ACACGTTGAGGTATTTTCA
95912366 ATTTC
1 ATTTC
95912371 CATTTTTCAA
Statistics
Matches: 393, Mismatches: 44, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
144 66 0.17
145 14 0.04
146 130 0.33
151 61 0.16
152 39 0.10
154 21 0.05
156 2 0.01
157 60 0.15
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (145 bp):
ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTATTTTCA
Found at i:95912149 original size:218 final size:218
Alignment explanation
Indices: 95911771--95912380 Score: 797
Period size: 218 Copynumber: 2.7 Consensus size: 218
95911761 TGATGCTTTT
* *
95911771 ATTTCTGTTTTAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGT
* *
95911836 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAACGTGTTGAGCCTCAAGACACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACG
* * **
95911901 TTGAGGTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT
131 CTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCAT
*
95911966 CAAGACACGTTGAGGTATTTTCA
196 CAAGACACGCTGAGGTATTTTCA
95911989 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGT
* * * *
95912054 AATTTCAATTTCTGTTTTCAAAATTCAGCTTATATTGCGAGAAATGAGTTGAGCCTCAAGACATG
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACG
95912119 CTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTG
131 CTGAGGTATTTTCAATTTCTGTTTTTC-----AAAAAATCAACTCATATTGCGAGAAATGAGTTG
* *
95912184 AGCCTCAAGACATGCTGAGGTATTTTCA
191 AGCATCAAGACACGCTGAGGTATTTTCA
* * * ** * *
95912212 ATTTTTATCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGC
1 ATTTCTGT-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGT
* * * ** *
95912277 TGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCGTATTGCGAGAGGCGAATTGAGCCTC
60 TGAGGTAATTTCAATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAACGAGTTGAGCCTC
* * **
95912342 AGGTCACACGCCGAGGTATTTTCAATTTCCATTTTTCAA
123 AAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
95912381 CTTCTGCCTT
Statistics
Matches: 341, Mismatches: 36, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
218 147 0.43
223 62 0.18
224 4 0.01
228 2 0.01
229 64 0.19
230 2 0.01
231 32 0.09
233 28 0.08
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (218 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGT
AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACG
CTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCAT
CAAGACACGCTGAGGTATTTTCA
Found at i:95912193 original size:79 final size:77
Alignment explanation
Indices: 95911782--95913359 Score: 1027
Period size: 72 Copynumber: 19.8 Consensus size: 77
95911772 TTTCTGTTTT
* ** * * *
95911782 AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
95911847 CTG-TTTTC---
66 CTGTTTTTCAAA
* *** * * **
95911855 -AAAATTCAACTCATATTGCGAGAAACGTGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
*
95911919 CTGCTTTTC---
66 CTGTTTTTCAAA
* * *
95911928 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
95911993 CTG-TTTTC---
66 CTGTTTTTCAAA
* ** * * * *
95912001 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
95912065 CTG-TTTTC---
66 CTGTTTTTCAAA
* * * ** * *
95912073 -AAAATTCAGCTTATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
95912137 CTGTTTTTCAAAAA
66 CTGTTTTTC--AAA
** * *
95912151 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
* * *
95912216 TTATCTTTCAAAA
66 CTGTTTTTC-AAA
* *
95912229 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
*
95912294 CTGTTGTT---A
66 CTGTTTTTCAAA
* * * *
95912303 AAAAAATCAACTCGTATTGCGAGAGGCGAATTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
**
95912368 TTCCATTTTTCAACTTCTGCCTTTCA
64 TTCTGTTTTTCAA------------A
* * * *
95912394 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 A--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTC
95912458 AATTTCTGTCTTTT---A
61 AATTTCTGT-TTTTCAAA
* *
95912473 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GATCACATACTGAGGTATTTTTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CAC--GCTGAGGTA--TTTTC
* *
95912537 AATTTATATTTTTC--A
61 AATTTCTGTTTTTCAAA
* * * *
95912552 AAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTC--
**
95912616 AATCTATTTTCAAT-TTCTGTTCGTCA
61 -A---A-TTTC--TGTT-T-TTC-AAA
* *
95912642 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAA
**
95912706 TTTCTGTTCGTC---
63 TTTCTGTTTTTCAAA
* * * * *
95912718 -AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAA
1 AAAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAA
*
95912781 ATTCTGTTTTTAATTTCTATTTTTCAA
63 TTTCTG---TT--TTTC-A------AA
* *
95912808 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCTCACACG-TCGAGGTATTTTT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCT-GAGGTA-TTTT
**
95912871 CAATTT-TG---TTC-GG
60 CAATTTCTGTTTTTCAAA
* * * * * * *
95912884 CAAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCGAGCCACATGCTGAGGTCTTTTCAAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTCAAT
95912949 TTCTGTTTTTAATTTCTATTTTTCAA
64 TTCTG---TT--TTTC-A------AA
* *
95912975 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA-TTTTCAA
95913040 TTTCTGTTTTTCAAAA
63 TTTCTGTTTTTC-AAA
* * * * * * *
95913056 AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGGCTCGGGTCATGTGCCGAGGTATTTTTTAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA--CGCTGAGGTA-TTTTCAA
*
95913121 TTTTTGTTTTTC--A
63 TTTCTGTTTTTCAAA
* *
95913134 AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA-AATCACGCACTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACG--CTGAGGTATTTTCAA
95913198 TTTCTGTTTTTCAAA
63 TTTCTGTTTTTCAAA
* * * *
95913213 AAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCGGGTCACACGCCGAGGTATTTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA-TTTTCAA
95913278 TTTCTGTTTTTCAAAA
63 TTTCTGTTTTTC-AAA
* * * *
95913294 AAAAAATTAACTCATATTGCGAGAGGTGAGTTAAG-CTCAGGTCACACGTTGACGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
95913358 TT
64 TT
95913360 TTTGGCTTTT
Statistics
Matches: 1236, Mismatches: 152, Indels: 228
0.76 0.09 0.14
Matches are distributed among these distances:
72 190 0.15
73 15 0.01
74 109 0.09
75 104 0.08
76 31 0.03
77 66 0.05
78 120 0.10
79 180 0.15
80 42 0.03
81 108 0.09
82 4 0.00
83 8 0.01
84 7 0.01
85 2 0.00
86 2 0.00
87 9 0.01
89 4 0.00
90 55 0.04
91 50 0.04
92 60 0.05
93 66 0.05
94 4 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (77 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
CTGTTTTTCAAA
Found at i:95912502 original size:77 final size:76
Alignment explanation
Indices: 95912395--95912615 Score: 248
Period size: 79 Copynumber: 2.9 Consensus size: 76
95912385 TGCCTTTCAA
* * *
95912395 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
95912460 TTTCTGTCTTTT
66 TTTCTGT-TTTT
* * **
95912472 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACATACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTA--TTTT
* *
95912536 CAATTTATATTTTT
63 CAATTTCTGTTTTT
* * * * *
95912550 CAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTC
1 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCT-GAGGTATTTTC
95912614 AA
64 AA
95912616 AATCTATTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
76 3 0.02
77 54 0.44
78 5 0.04
79 59 0.48
80 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
TTTCTGTTTTT
Found at i:95912530 original size:170 final size:169
Alignment explanation
Indices: 95912220--95912552 Score: 465
Period size: 170 Copynumber: 2.0 Consensus size: 169
95912210 CAATTTTTAT
*
95912220 CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAA
1 CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGCTAA
* *
95912285 TTTCAATTTCTGTTGTTAAAAAAATCAACTCGTATTGCGAGAGGCGAATTGAGCCTCAGGTCACA
66 TTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGCGAATTGAGCCTCAGATCACA
* *
95912350 CGCCGAGGTA-TTTTCAATTTCCATTTTTCAACTTCTGC
131 CACCGAGGTATTTTTCAATTTACATTTTTCAACTTCTGC
* *
95912388 CTTTC-AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGCGCTGAGC
1 CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG---ACACGCTGAGC
* * * * *
95912451 TATTTTCAATTTCTGTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
63 TAATTTCAATTTCTGT-TGTTAAAAAAATCAACTCATATTGCGAGAGGCGAATTGAGCCTCAGAT
* * *
95912516 CACATACTGAGGTATTTTTTCAATTTATATTTTTCAA
127 CACACACCGAGGTA-TTTTTCAATTTACATTTTTCAA
95912553 AAAAATCAAC
Statistics
Matches: 144, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
166 2 0.01
167 41 0.28
168 5 0.03
169 24 0.17
170 53 0.37
172 19 0.13
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (169 bp):
CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGCTAA
TTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGCGAATTGAGCCTCAGATCACA
CACCGAGGTATTTTTCAATTTACATTTTTCAACTTCTGC
Found at i:95912624 original size:77 final size:76
Alignment explanation
Indices: 95912395--95912625 Score: 266
Period size: 77 Copynumber: 3.0 Consensus size: 76
95912385 TGCCTTTCAA
* * * ** *
95912395 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTATTTTCAA
*
95912460 TTTCTGTCTTTT
66 TTTCTAT-TTTT
* * *
95912472 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACATACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTA--TTTTC
*
95912537 AATTTATATTTTT
64 AATTTCTATTTTT
* * *
95912550 CAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTC
1 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCT-GAGGTATTTTC
**
95912614 AAAATCTATTTT
64 AATTTCTATTTT
95912626 CAATTTCTGT
Statistics
Matches: 130, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
77 63 0.48
78 5 0.04
79 62 0.48
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTATTTTCAA
TTTCTATTTTT
Found at i:95912745 original size:75 final size:76
Alignment explanation
Indices: 95912620--95912788 Score: 236
Period size: 75 Copynumber: 2.2 Consensus size: 76
95912610 TTTCAAAATC
*
95912620 TATTTTCAATTTCTGTTCGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGGC
1 TATTTTCAATTTCTGTTCGTC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGC
*
95912684 TCACACGCTGAGG
65 -CACACGCCGAGG
*
95912697 TATTTTCAATTTCTGTTCGTC-AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGC
1 TATTTTCAATTTCTGTTCGTCAAAAAATCAACTCATATTG-CAAGAGGTGAGTTGAGCCTCGGGC
*
95912760 CACATGCCGAGG
65 CACACGCCGAGG
* *
95912772 TCTTTTCAAATTCTGTT
1 TATTTTCAATTTCTGTT
95912789 TTTAATTTCT
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
75 59 0.70
76 4 0.05
77 21 0.25
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (76 bp):
TATTTTCAATTTCTGTTCGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGCC
ACACGCCGAGG
Found at i:95912837 original size:167 final size:167
Alignment explanation
Indices: 95912453--95913288 Score: 890
Period size: 167 Copynumber: 5.0 Consensus size: 167
95912443 CGCTGAGCTA
* * *
95912453 TTTTCAATTTCTGTCTTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGAT
1 TTTTTAATTTCTAT-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGAT
** * * *
95912516 CACATACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATG-TG
64 CACACGCTGAGGTA-TTTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGA-GATG
* * * *
95912580 AGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTA
126 AGTTGAGCCTCGGGTCACATGCCGAGGTCTTTTCAAATTCTG
* * ** * *
95912622 TTTTCAATTTCTGTTCGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCA
** *
95912687 CACGCTGAGGTA-TTTTCAATTTCTGTTCGTC-AAAAATCAACTCATATTGTC-AGAGGTGAGTT
66 CACGCTGAGGTATTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTG-CGAGAGATGAGTT
* *
95912749 GAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTG
130 GAGCCTCGGGTCACATGCCGAGGTCTTTTCAAATTCTG
* *
95912787 TTTTTAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTTAATTTCTATTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGAT
***
95912852 CACACG-TCGAGGTATTTTTCAATTT-TGTTCGGC-AAAAATCAACTCATATTGCGAGAGATGAG
64 CACACGCT-GAGGTATTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAG
* * * *
95912914 TTGAGTCTCGAGCCACATGCTGAGGTCTTTTCAAATTCTG
128 TTGAGCCTCGGGTCACATGCCGAGGTCTTTTCAAATTCTG
* *
95912954 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-T
1 TTTTTAATTTCTATTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGAT
*
95913018 CACACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGAT
64 CACACGCTGAGGTATTTTTCAATTTCTGTTTTTC----AAAAAATCAACTCATATTGCGAGAGAT
* **
95913083 GAGTTGAGGCTCGGGTCATGTGCCGAGG-----T---A---T-
125 GAGTTGAGCCTCGGGTCACATGCCGAGGTCTTTTCAAATTCTG
* * * ***
95913114 TTTTTAATTTTTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAATCA
1 TTTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCA
* *
95913179 CGCACTGAGGTA-TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGATGAG
66 CACGCTGAGGTATTTTTCAATTTCTGTTTTTC---AAAAAATCAACTCATATTGCGAGAGATGAG
* * * *
95913243 TTGAACCTCGGGTCACACGCCGAGGTATTTTTCAATTTCTG
128 TTGAGCCTCGGGTCACATGCCGAGGT-CTTTTCAAATTCTG
95913284 TTTTT
1 TTTTT
95913289 CAAAAAAAAA
Statistics
Matches: 581, Mismatches: 55, Indels: 61
0.83 0.08 0.09
Matches are distributed among these distances:
157 53 0.09
158 19 0.03
159 49 0.08
160 17 0.03
161 1 0.00
163 1 0.00
164 2 0.00
165 73 0.13
166 67 0.12
167 167 0.29
168 12 0.02
169 64 0.11
170 8 0.01
172 48 0.08
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (167 bp):
TTTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCA
CACGCTGAGGTATTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTG
AGCCTCGGGTCACATGCCGAGGTCTTTTCAAATTCTG
Done.