Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr11 124536837 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 124536837 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 312 characters in sequence are not A, C, G, or T File 33 of 427 Found at i:8419844 original size:85 final size:84 Alignment explanation
Indices: 8419700--8420265 Score: 431 Period size: 85 Copynumber: 6.7 Consensus size: 84 8419690 AAANATCTGC * * * 8419700 TTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATCAGCTTGTTACCCTACTGCTTAGGGGGTTA 1 TTCCCTACTGCTTAGGG-GATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTA * * 8419765 AGCTTGTTGTCTTCGATCTAT 65 AGCTCGTCGTCTTCGATCT-T * * * 8419786 TTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTA-GGGTTTAA 1 TTCCCTACTGCTTAGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAA * * * * 8419850 GGTCCATCGGCTTCGATCTG 66 GCT-CGTCGTCTTCGATCTT * * 8419870 TTCCCTACTGCTTAGGGTGA-AAGATCTGCAAATTC-GCTTGTTACCCTACTGCTTAGGGGGTTA 1 TTCCCTACTGCTTAGGG-GATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTA ** * 8419933 AGCTCGTTATC-TCGATCTG 65 AGCTCGTCGTCTTCGATCTT ** * * ** *** * 8419952 TT-CCTACTGCTTAGGGG-TAAGAT-TGTAAATCTTCAATCTGCTT-CACTGCAACTTAGCAAGA 1 TTCCCTACTGCTTAGGGGATAAGATCTGTAAA--TTCAGCCTG-TTACCCTACTGCTTAGGGGGT * * * ** 8420013 CAAGATCGCCGGATT-GAT-TT 63 TAAGCTCGTCGTCTTCGATCTT * * * * * * 8420033 GTTCCACAACT--TCAGGGAGACAAGATCTGTAATTTTCAGCCTATTACCCTACTGCCTA-GGGG 1 -TTCC-CTACTGCTTAGGG-GATAAGATCTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGGG * * * * 8420095 CTAAGGCCCTTCGTCTTCGATCTA 62 TTAA-GCTCGTCGTCTTCGATCTT * * * 8420119 CTCCACTACTGCTTAGGGAGACAAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAGGGGGTT 1 TTCC-CTACTGCTTAGGG-GATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT * * 8420183 AAAGCCCTTCGTCTTCGATCTAT 64 -AAGCTCGTCGTCTTCGATCT-T * * * 8420206 TTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG 1 TTCCCTACTGCTTA-GGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG 8420266 AGATAAGGCT Statistics Matches: 372, Mismatches: 81, Indels: 53 0.74 0.16 0.10 Matches are distributed among these distances: 79 5 0.01 80 6 0.02 81 18 0.05 82 38 0.10 83 31 0.08 84 77 0.21 85 84 0.23 86 60 0.16 87 53 0.14 ACGTcount: A:0.22, C:0.23, G:0.21, T:0.33 Consensus pattern (84 bp): TTCCCTACTGCTTAGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAA GCTCGTCGTCTTCGATCTT Found at i:8420264 original size:43 final size:44 Alignment explanation
Indices: 8420124--8420403 Score: 148 Period size: 43 Copynumber: 6.5 Consensus size: 44 8420114 ATCTACTCCA * ** * * 8420124 CTACTGCTTAGGGAGACAAGATCTAT-AAT-TCAGCCTGTTACC 1 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTAGCCTGTTACC ** ** * * * * 8420166 CTACTGCTTAGGGGGTTAAAGCCCT-T-CGTCTTCGATCTATTTCC 1 CTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTAG-CCTGTTACC * 8420210 CTACTACTTAGGGGGTTAAGATCTGTAAAT-TTAGCCTGTTACC 1 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTAGCCTGTTACC * * * ** * 8420253 CTACTGCTTAGGGAGATAAG-GCTTGTAAAT-TCGGCTTGTTACC 1 CTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTAGCCTGTTACC * * * ** * * * * * 8420296 CTACTGCTTATGGAGTTAA-AGC-CCATCATCTTTGATCTATTTCC 1 CTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTAG-CCTGTTACC * 8420340 CTACTACTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACC 1 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTT-AGCCTGTTACC * 8420384 CTACTGCTTAGGGGTTTAAG 1 CTACTGCTTAGGGGGTTAAG 8420404 GCTTGTGAAT Statistics Matches: 173, Mismatches: 51, Indels: 25 0.69 0.20 0.10 Matches are distributed among these distances: 41 1 0.01 42 19 0.11 43 80 0.46 44 62 0.36 45 11 0.06 ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34 Consensus pattern (44 bp): CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTAGCCTGTTACC Found at i:8420333 original size:130 final size:131 Alignment explanation
Indices: 8420124--8420416 Score: 416 Period size: 130 Copynumber: 2.3 Consensus size: 131 8420114 ATCTACTCCA * * * * 8420124 CTACTGCTTAGGGAGACAA-G-ATCTATAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAG 1 CTACTGCTTAGGGAGATAAGGCTTGTA-AATTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAAG * * 8420187 CCCTTCGTCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAAAT-TT-AGCCTGTT 65 CCCATCATCTTCGATCTATTTCCCTACTACTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTT 8420250 ACC 129 ACC * * * 8420253 CTACTGCTTAGGGAGATAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTATGGAGTTAAAGC 1 CTACTGCTTAGGGAGATAAGGCTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAAGC * 8420318 CCATCATCTTTGATCTATTTCCCTACTACTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC 66 CCATCATCTTCGATCTATTTCCCTACTACTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC 8420383 C 131 C * * 8420384 CTACTGCTTAGGG-GTTTAAGGCTTGTGAATTCA 1 CTACTGCTTAGGGAG-ATAAGGCTTGTAAATTCA 8420417 CTGATTCTAG Statistics Matches: 146, Mismatches: 13, Indels: 8 0.87 0.08 0.05 Matches are distributed among these distances: 129 37 0.25 130 67 0.46 131 42 0.29 ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34 Consensus pattern (131 bp): CTACTGCTTAGGGAGATAAGGCTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAAGC CCATCATCTTCGATCTATTTCCCTACTACTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC C Found at i:8420576 original size:61 final size:64 Alignment explanation
Indices: 8420460--8420584 Score: 186 Period size: 61 Copynumber: 2.0 Consensus size: 64 8420450 CCATGTATCT * 8420460 ATGCTTATGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG 1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG * * 8420524 ATGCTTTATGTCAACTAATTAGGATG-T-T-AT-GAAATGAATCAAATGCTCCTAACTAGATGTG 1 ATGC-TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG 8420585 TTATTATATG Statistics Matches: 57, Mismatches: 3, Indels: 5 0.88 0.05 0.08 Matches are distributed among these distances: 61 30 0.53 62 2 0.04 63 1 0.02 64 5 0.09 65 19 0.33 ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33 Consensus pattern (64 bp): ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG Found at i:8421732 original size:17 final size:17 Alignment explanation
Indices: 8421700--8421731 Score: 50 Period size: 15 Copynumber: 2.0 Consensus size: 17 8421690 TTGGCCTCTC 8421700 CTTTTTCTTTCTTTTTT 1 CTTTTTCTTTCTTTTTT 8421717 CTTTTT-TTT-TTTTTT 1 CTTTTTCTTTCTTTTTT 8421732 TACTGAACTT Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 15 6 0.40 16 3 0.20 17 6 0.40 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (17 bp): CTTTTTCTTTCTTTTTT Found at i:8422240 original size:12 final size:12 Alignment explanation
Indices: 8422218--8422262 Score: 63 Period size: 12 Copynumber: 3.6 Consensus size: 12 8422208 TGATCCCCCT 8422218 TTTTCTTTTTTTC 1 TTTT-TTTTTTTC * 8422231 TTTTTTTTTTCC 1 TTTTTTTTTTTC 8422243 TTTTTTTTTTCTC 1 TTTTTTTTTT-TC 8422256 TTTTTTT 1 TTTTTTT 8422263 GGATTGAATG Statistics Matches: 29, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 12 17 0.59 13 12 0.41 ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87 Consensus pattern (12 bp): TTTTTTTTTTTC Found at i:8424921 original size:6 final size:6 Alignment explanation
Indices: 8424908--8424939 Score: 57 Period size: 6 Copynumber: 5.5 Consensus size: 6 8424898 AATGCAAATG 8424908 ATGC-A ATGCAA ATGCAA ATGCAA ATGCAA ATG 1 ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATG 8424940 TATGGAATGA Statistics Matches: 26, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 5 4 0.15 6 22 0.85 ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19 Consensus pattern (6 bp): ATGCAA Found at i:8427022 original size:6 final size:6 Alignment explanation
Indices: 8427013--8427041 Score: 58 Period size: 6 Copynumber: 4.8 Consensus size: 6 8427003 TGACAATGAT 8427013 AACGAA AACGAA AACGAA AACGAA AACGA 1 AACGAA AACGAA AACGAA AACGAA AACGA 8427042 TAACAAAAAT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 23 1.00 ACGTcount: A:0.66, C:0.17, G:0.17, T:0.00 Consensus pattern (6 bp): AACGAA Found at i:8427050 original size:18 final size:18 Alignment explanation
Indices: 8427013--8427050 Score: 58 Period size: 18 Copynumber: 2.1 Consensus size: 18 8427003 TGACAATGAT * 8427013 AACGAAAACGAAAACGAA 1 AACGAAAACGAAAACAAA * 8427031 AACGAAAACGATAACAAA 1 AACGAAAACGAAAACAAA 8427049 AA 1 AA 8427051 TAATAATATA Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 18 18 1.00 ACGTcount: A:0.68, C:0.16, G:0.13, T:0.03 Consensus pattern (18 bp): AACGAAAACGAAAACAAA Found at i:8427576 original size:9 final size:9 Alignment explanation
Indices: 8427559--8427657 Score: 51 Period size: 9 Copynumber: 10.7 Consensus size: 9 8427549 TGATAGTATG * 8427559 TACACAATA 1 TACATAATA 8427568 TACATAATA 1 TACATAATA * * 8427577 TATTAAAATA 1 TA-CATAATA * 8427587 TATATACATA 1 TACATA-ATA * 8427597 TA-ATATTTA 1 TACATA-ATA * 8427606 TA-AAAATA 1 TACATAATA * * 8427614 TAAAAATATA 1 TACATA-ATA 8427624 TACATAATA 1 TACATAATA 8427633 TACATAAAGTA 1 TACAT-AA-TA 8427644 TACAT-ATA 1 TACATAATA 8427652 TACATA 1 TACATA 8427658 TTTATAATAC Statistics Matches: 73, Mismatches: 10, Indels: 14 0.75 0.10 0.14 Matches are distributed among these distances: 8 11 0.15 9 34 0.47 10 21 0.29 11 7 0.10 ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34 Consensus pattern (9 bp): TACATAATA Found at i:8427614 original size:23 final size:22 Alignment explanation
Indices: 8427564--8427639 Score: 63 Period size: 23 Copynumber: 3.5 Consensus size: 22 8427554 GTATGTACAC 8427564 AATATACATAATATATTAAAAT 1 AATATACATAATATATTAAAAT 8427586 ATATATACAT-ATAATATTTATAAA- 1 A-ATATACATAAT-ATA-TTA-AAAT * * 8427610 AATATA-AAAATATA-T-ACAT 1 AATATACATAATATATTAAAAT 8427629 AATATACATAA 1 AATATACATAA 8427640 AGTATACATA Statistics Matches: 44, Mismatches: 3, Indels: 16 0.70 0.05 0.25 Matches are distributed among these distances: 18 2 0.05 19 6 0.14 20 4 0.09 22 7 0.16 23 18 0.41 24 4 0.09 25 3 0.07 ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36 Consensus pattern (22 bp): AATATACATAATATATTAAAAT Found at i:8427622 original size:25 final size:25 Alignment explanation
Indices: 8427571--8427623 Score: 63 Period size: 25 Copynumber: 2.1 Consensus size: 25 8427561 CACAATATAC * * * 8427571 ATAATATATTAAAATATATATACAT 1 ATAATATATTAAAAAATATAAAAAT 8427596 ATAATAT-TTATAAAAATATAAAAAT 1 ATAATATATTA-AAAAATATAAAAAT 8427621 ATA 1 ATA 8427624 TACATAATAT Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 24 3 0.12 25 21 0.88 ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38 Consensus pattern (25 bp): ATAATATATTAAAAAATATAAAAAT Found at i:8429880 original size:24 final size:24 Alignment explanation
Indices: 8429848--8429897 Score: 64 Period size: 24 Copynumber: 2.1 Consensus size: 24 8429838 TGATATGATT * * 8429848 TTTTTATTTTATATGTTCAATTAA 1 TTTTAATTTTATATATTCAATTAA * * 8429872 TTTTAATTTTATTTATTTAATTAA 1 TTTTAATTTTATATATTCAATTAA 8429896 TT 1 TT 8429898 GAAAATAATG Statistics Matches: 22, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 24 22 1.00 ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66 Consensus pattern (24 bp): TTTTAATTTTATATATTCAATTAA Found at i:8439614 original size:21 final size:22 Alignment explanation
Indices: 8439585--8439648 Score: 60 Period size: 21 Copynumber: 2.9 Consensus size: 22 8439575 AAAAAATTAG * * 8439585 ATTAAATTATATTTTT-GTATC 1 ATTATATTATATTTTTAATATC * 8439606 ATTATATTAAATTATTTAAATATC 1 ATTATATTATATT-TTT-AATATC 8439630 ATT-TATTATTATTTTTAAT 1 ATTATATTA-TATTTTTAAT 8439649 TTTTTTAAAA Statistics Matches: 35, Mismatches: 4, Indels: 7 0.76 0.09 0.15 Matches are distributed among these distances: 21 11 0.31 22 6 0.17 23 8 0.23 24 10 0.29 ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58 Consensus pattern (22 bp): ATTATATTATATTTTTAATATC Found at i:8439681 original size:22 final size:21 Alignment explanation
Indices: 8439651--8439695 Score: 56 Period size: 22 Copynumber: 2.1 Consensus size: 21 8439641 TTTTTAATTT 8439651 TTTTAAAAT-ATGTATAATTAA 1 TTTTAAAATAATGTAT-ATTAA * 8439672 TTTTATAAATAATTTATATTAA 1 TTTTA-AAATAATGTATATTAA 8439694 TT 1 TT 8439696 ACTTCAAAGG Statistics Matches: 21, Mismatches: 1, Indels: 3 0.84 0.04 0.12 Matches are distributed among these distances: 21 5 0.24 22 11 0.52 23 5 0.24 ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53 Consensus pattern (21 bp): TTTTAAAATAATGTATATTAA Found at i:8441251 original size:24 final size:22 Alignment explanation
Indices: 8441217--8441260 Score: 61 Period size: 24 Copynumber: 1.9 Consensus size: 22 8441207 GAAATTTAAG 8441217 TCGAGTCAAATCTAATAAAATTGT 1 TCGAGTCAAAT-TAA-AAAATTGT * 8441241 TCGAGTTAAATTAAAAAATT 1 TCGAGTCAAATTAAAAAATT 8441261 AAGCATGTCA Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 22 6 0.32 23 3 0.16 24 10 0.53 ACGTcount: A:0.45, C:0.09, G:0.11, T:0.34 Consensus pattern (22 bp): TCGAGTCAAATTAAAAAATTGT Found at i:8445579 original size:2 final size:2 Alignment explanation
Indices: 8445572--8445606 Score: 70 Period size: 2 Copynumber: 17.5 Consensus size: 2 8445562 AAATAAATAA 8445572 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 8445607 ACAAAGTAAA Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 33 1.00 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (2 bp): AT Found at i:8446889 original size:6 final size:6 Alignment explanation
Indices: 8446874--8446904 Score: 53 Period size: 6 Copynumber: 5.2 Consensus size: 6 8446864 CTGTGTACCG * 8446874 TACTGC TACTGT TACTGT TACTGT TACTGT T 1 TACTGT TACTGT TACTGT TACTGT TACTGT T 8446905 CCGGCTTCGG Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 6 24 1.00 ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48 Consensus pattern (6 bp): TACTGT Found at i:8446893 original size:59 final size:53 Alignment explanation
Indices: 8446771--8446892 Score: 181 Period size: 53 Copynumber: 2.3 Consensus size: 53 8446761 ATATTGTTAT * * ** 8446771 TGTTACCGTTACTGATTCGAATTTATTCTGATGAGGTACTCTGTGCACCGTAC 1 TGTTACTGTTACTGTTTCGAATTTATTCCAATGAGGTACTCTGTGCACCGTAC * * 8446824 TGTTACTGTTACTGTTTCGGATTTATTCCAATGAGGTACTCTGTGTACCGTAC 1 TGTTACTGTTACTGTTTCGAATTTATTCCAATGAGGTACTCTGTGCACCGTAC * 8446877 TGCTACTGTTACTGTT 1 TGTTACTGTTACTGTT 8446893 ACTGTTACTG Statistics Matches: 62, Mismatches: 7, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 53 62 1.00 ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41 Consensus pattern (53 bp): TGTTACTGTTACTGTTTCGAATTTATTCCAATGAGGTACTCTGTGCACCGTAC Found at i:8447064 original size:18 final size:18 Alignment explanation
Indices: 8447017--8447142 Score: 83 Period size: 18 Copynumber: 6.5 Consensus size: 18 8447007 TGAAAAGATC * 8447017 GATTATTACTGAATAATTT 1 GATTGTTACTGAATAA-TT * * 8447036 AATTGTTACTGTAT-ATCT 1 GATTGTTACTGAATAAT-T * 8447054 GATTTTTACTGAATAATT 1 GATTGTTACTGAATAATT 8447072 GATTGTTACTGGATAACCGATCAATT 1 GATTGTTACT-G---A---AT-AATT * * 8447098 GATTGATATTGAATAATT 1 GATTGTTACTGAATAATT * * 8447116 GATTATTATTGAATAATT 1 GATTGTTACTGAATAATT 8447134 GATTGTTAC 1 GATTGTTAC 8447143 CAAATAACTG Statistics Matches: 84, Mismatches: 13, Indels: 21 0.71 0.11 0.18 Matches are distributed among these distances: 17 1 0.01 18 50 0.60 19 16 0.19 22 2 0.02 25 3 0.04 26 12 0.14 ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45 Consensus pattern (18 bp): GATTGTTACTGAATAATT Found at i:8448247 original size:40 final size:35 Alignment explanation
Indices: 8448181--8448311 Score: 120 Period size: 35 Copynumber: 3.6 Consensus size: 35 8448171 CATGGCAAAG 8448181 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT 1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT 8448216 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT 1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT ** * ** * * 8448256 TAAGAAACGTAGGTATGACAT-TTCCTATACCGAGT 1 TGTGAAATGTAGGTATGGTATCATCC-ATACTGAGT * * 8448291 TGTAAAATGTAGGTGTGGTAT 1 TGTGAAATGTAGGTATGGTAT 8448312 TTCAATGAGG Statistics Matches: 76, Mismatches: 14, Indels: 12 0.75 0.14 0.12 Matches are distributed among these distances: 34 3 0.04 35 40 0.53 37 2 0.03 38 4 0.05 40 27 0.36 ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34 Consensus pattern (35 bp): TGTGAAATGTAGGTATGGTATCATCCATACTGAGT Found at i:8456237 original size:40 final size:38 Alignment explanation
Indices: 8456117--8456248 Score: 132 Period size: 35 Copynumber: 3.6 Consensus size: 38 8456107 TCCTCATTGA * * 8456117 AATACCATACCTACATTTTACAACTCGGTATGG--GA- 1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT * * ** 8456152 AATGCCATACCTACGTTTCTTAACTCAGTATGGATTTGAT 1 AATACCATACCTACATTTCACAACTCAGTATGGA--TGAT * 8456192 AATACCATACCTACATTTCACAACTTAGTATGGATG-- 1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT * 8456228 -ATACCATACCTACAGTTCACA 1 AATACCATACCTACATTTCACA 8456249 CTTTGCCATG Statistics Matches: 80, Mismatches: 12, Indels: 10 0.78 0.12 0.10 Matches are distributed among these distances: 35 47 0.59 38 2 0.03 39 2 0.03 40 29 0.36 ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31 Consensus pattern (38 bp): AATACCATACCTACATTTCACAACTCAGTATGGATGAT Found at i:8457285 original size:18 final size:18 Alignment explanation
Indices: 8457262--8457412 Score: 90 Period size: 18 Copynumber: 7.9 Consensus size: 18 8457252 GAACAATTAT * * 8457262 TTATTTAGTAATAATCAG 1 TTATTCAGTAATAATCAA ** * 8457280 TTATTTGGTAACAATCAA 1 TTATTCAGTAATAATCAA * 8457298 TTATTCAATAATAATCAA 1 TTATTCAGTAATAATCAA 8457316 TTATTCAGT-ATCAATCAA 1 TTATTCAGTAAT-AATCAA * 8457334 TTGATCGGTTATCCAGTAACAATCAA 1 TT-A-----T-T-CAGTAATAATCAA * 8457360 TTATTCAGTAAAAATCAGA 1 TTATTCAGTAATAATCA-A * * * 8457379 -TATACAGTAACAATTAAA 1 TTATTCAGTAATAA-TCAA 8457397 TTATTCAGTAATAATC 1 TTATTCAGTAATAATC 8457413 GATCTTTTCA Statistics Matches: 104, Mismatches: 16, Indels: 26 0.71 0.11 0.18 Matches are distributed among these distances: 17 2 0.02 18 69 0.66 19 16 0.15 20 1 0.01 24 1 0.01 25 2 0.02 26 12 0.12 27 1 0.01 ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36 Consensus pattern (18 bp): TTATTCAGTAATAATCAA Found at i:8457620 original size:53 final size:53 Alignment explanation
Indices: 8457540--8457661 Score: 181 Period size: 53 Copynumber: 2.3 Consensus size: 53 8457530 TAACAGTAAT * ** * 8457540 AGTAACAGTAGCAGTACGGTACACAGAGTACCTCATTGGAATAAATCCGAAAC 1 AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAATAAATCCAAAAC * * 8457593 AGTAACAGTAACAGTACGGTGCACAGAGTACCTCATCAGAATAAATTCAAAAC 1 AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAATAAATCCAAAAC * 8457646 AGTAACGGTAACAGTA 1 AGTAACAGTAACAGTA 8457662 ACAATATCCG Statistics Matches: 62, Mismatches: 7, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 53 62 1.00 ACGTcount: A:0.42, C:0.20, G:0.20, T:0.19 Consensus pattern (53 bp): AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAATAAATCCAAAAC Found at i:8462063 original size:9 final size:10 Alignment explanation
Indices: 8462034--8462066 Score: 50 Period size: 11 Copynumber: 3.3 Consensus size: 10 8462024 AATTAATTTT 8462034 TTATTTTAAA 1 TTATTTTAAA 8462044 TATATTTTAAA 1 T-TATTTTAAA 8462055 TTA-TTTAAA 1 TTATTTTAAA 8462064 TTA 1 TTA 8462067 AATTCAAATA Statistics Matches: 22, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 9 9 0.41 10 3 0.14 11 10 0.45 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (10 bp): TTATTTTAAA Found at i:8465995 original size:16 final size:17 Alignment explanation
Indices: 8465961--8466005 Score: 56 Period size: 16 Copynumber: 2.7 Consensus size: 17 8465951 GGTTATGGAA * * 8465961 GGGAGGGAGAGAGAGAG 1 GGGAAGGAGAGAGAAAG 8465978 GGGAAGGAGA-AGAAAG 1 GGGAAGGAGAGAGAAAG * 8465994 GGAAAGGAGAGA 1 GGGAAGGAGAGA 8466006 TTGAAGCATT Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 16 14 0.58 17 10 0.42 ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00 Consensus pattern (17 bp): GGGAAGGAGAGAGAAAG Found at i:8466048 original size:3 final size:3 Alignment explanation
Indices: 8466040--8466070 Score: 62 Period size: 3 Copynumber: 10.3 Consensus size: 3 8466030 TGAGTTTCAG 8466040 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A 1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A 8466071 AAAGGATGAA Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 28 1.00 ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00 Consensus pattern (3 bp): AGA Found at i:8467844 original size:25 final size:25 Alignment explanation
Indices: 8467816--8467864 Score: 64 Period size: 25 Copynumber: 2.0 Consensus size: 25 8467806 GCTAAAATAG 8467816 AATTTGTCAACTCGACT-AACTCGAA 1 AATTT-TCAACTCGACTCAACTCGAA * * 8467841 AATTTTTAACTCGATTCAACTCGA 1 AATTTTCAACTCGACTCAACTCGA 8467865 CTCGATCAAA Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 24 9 0.43 25 12 0.57 ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33 Consensus pattern (25 bp): AATTTTCAACTCGACTCAACTCGAA Found at i:8468220 original size:51 final size:51 Alignment explanation
Indices: 8468163--8468266 Score: 208 Period size: 51 Copynumber: 2.0 Consensus size: 51 8468153 TTTTACCACA 8468163 TTCATCTTTATAATATTTATTTTTCCTTATAATTTTCATTTTACATACGAT 1 TTCATCTTTATAATATTTATTTTTCCTTATAATTTTCATTTTACATACGAT 8468214 TTCATCTTTATAATATTTATTTTTCCTTATAATTTTCATTTTACATACGAT 1 TTCATCTTTATAATATTTATTTTTCCTTATAATTTTCATTTTACATACGAT 8468265 TT 1 TT 8468267 GATATCTTAT Statistics Matches: 53, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 51 53 1.00 ACGTcount: A:0.27, C:0.13, G:0.02, T:0.58 Consensus pattern (51 bp): TTCATCTTTATAATATTTATTTTTCCTTATAATTTTCATTTTACATACGAT Found at i:8471103 original size:19 final size:18 Alignment explanation
Indices: 8471062--8471105 Score: 52 Period size: 19 Copynumber: 2.4 Consensus size: 18 8471052 TAAATAAAAC * * 8471062 TTTTATATTTCATAATTA 1 TTTTATTTTTCAGAATTA * 8471080 ATTTATTTTTACAGAATTA 1 TTTTATTTTT-CAGAATTA 8471099 TTTTATT 1 TTTTATT 8471106 CAAAAAAAGA Statistics Matches: 21, Mismatches: 4, Indels: 1 0.81 0.15 0.04 Matches are distributed among these distances: 18 8 0.38 19 13 0.62 ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61 Consensus pattern (18 bp): TTTTATTTTTCAGAATTA Found at i:8471200 original size:24 final size:24 Alignment explanation
Indices: 8471156--8471203 Score: 62 Period size: 24 Copynumber: 2.0 Consensus size: 24 8471146 TTCTATATTT * 8471156 ATTTTTATATAAAGTAAAAAAATC 1 ATTTTTATATAAACTAAAAAAATC 8471180 ATTTTTATA-AAATCTATAAAAAAT 1 ATTTTTATATAAA-CTA-AAAAAAT 8471204 TTAAAACCAC Statistics Matches: 21, Mismatches: 1, Indels: 3 0.84 0.04 0.12 Matches are distributed among these distances: 23 3 0.14 24 11 0.52 25 7 0.33 ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40 Consensus pattern (24 bp): ATTTTTATATAAACTAAAAAAATC Found at i:8471378 original size:11 final size:11 Alignment explanation
Indices: 8471362--8471390 Score: 58 Period size: 11 Copynumber: 2.6 Consensus size: 11 8471352 GTGGGTAGAG 8471362 TTGAGTTGTGT 1 TTGAGTTGTGT 8471373 TTGAGTTGTGT 1 TTGAGTTGTGT 8471384 TTGAGTT 1 TTGAGTT 8471391 AGGTCTAAAT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 18 1.00 ACGTcount: A:0.10, C:0.00, G:0.34, T:0.55 Consensus pattern (11 bp): TTGAGTTGTGT Found at i:8472253 original size:2 final size:2 Alignment explanation
Indices: 8472246--8472284 Score: 60 Period size: 2 Copynumber: 19.5 Consensus size: 2 8472236 TGGAACTTGG * * 8472246 AT AT AT AT AC AT AT AT AT AT AT AT AC AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 8472285 CACATAGCAT Statistics Matches: 33, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 2 33 1.00 ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44 Consensus pattern (2 bp): AT Found at i:8472261 original size:8 final size:8 Alignment explanation
Indices: 8472248--8472290 Score: 59 Period size: 8 Copynumber: 5.4 Consensus size: 8 8472238 GAACTTGGAT 8472248 ATATATAC 1 ATATATAC * 8472256 ATATATAT 1 ATATATAC 8472264 ATATATAC 1 ATATATAC * 8472272 ATATATAT 1 ATATATAC * 8472280 ATATACAC 1 ATATATAC 8472288 ATA 1 ATA 8472291 GCATGTTTTA Statistics Matches: 30, Mismatches: 5, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 8 30 1.00 ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40 Consensus pattern (8 bp): ATATATAC Found at i:8472267 original size:16 final size:16 Alignment explanation
Indices: 8472246--8472290 Score: 81 Period size: 16 Copynumber: 2.8 Consensus size: 16 8472236 TGGAACTTGG 8472246 ATATATATACATATAT 1 ATATATATACATATAT 8472262 ATATATATACATATAT 1 ATATATATACATATAT * 8472278 ATATATACACATA 1 ATATATATACATA 8472291 GCATGTTTTA Statistics Matches: 28, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 16 28 1.00 ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40 Consensus pattern (16 bp): ATATATATACATATAT Found at i:8474103 original size:43 final size:43 Alignment explanation
Indices: 8474042--8474131 Score: 180 Period size: 43 Copynumber: 2.1 Consensus size: 43 8474032 AAATGGATAA 8474042 GATTACCTATATCAGTCGGTAACTTGCATCCAAGAAAATCGTT 1 GATTACCTATATCAGTCGGTAACTTGCATCCAAGAAAATCGTT 8474085 GATTACCTATATCAGTCGGTAACTTGCATCCAAGAAAATCGTT 1 GATTACCTATATCAGTCGGTAACTTGCATCCAAGAAAATCGTT 8474128 GATT 1 GATT 8474132 GGTTCTAAGT Statistics Matches: 47, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 43 47 1.00 ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31 Consensus pattern (43 bp): GATTACCTATATCAGTCGGTAACTTGCATCCAAGAAAATCGTT Found at i:8478473 original size:19 final size:19 Alignment explanation
Indices: 8478445--8478481 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 19 8478435 TATCTAATGA 8478445 GATATTGTTA-AAAATTTT 1 GATATTGTTAGAAAATTTT 8478463 GATACTTGTTAGAAAATTT 1 GATA-TTGTTAGAAAATTT 8478482 GGCAAAATAT Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 18 4 0.24 19 6 0.35 20 7 0.41 ACGTcount: A:0.38, C:0.03, G:0.14, T:0.46 Consensus pattern (19 bp): GATATTGTTAGAAAATTTT Found at i:8478519 original size:54 final size:54 Alignment explanation
Indices: 8478431--8478535 Score: 140 Period size: 54 Copynumber: 1.9 Consensus size: 54 8478421 ATAAATATGA ** * * 8478431 AAAATATCTAATGAGATATTGTTAAAAATTTTGATA-CTTGTTAGAAAATTTGGC 1 AAAATATCTAATGAGATACCGTTAAAAATATTGATATCATGTTA-AAAATTTGGC * * 8478485 AAAATATCTAATGAGATGCCGTTAGAAATATTGATATCATGTTAAAAATTT 1 AAAATATCTAATGAGATACCGTTAAAAATATTGATATCATGTTAAAAATTT 8478536 CGCTATATGT Statistics Matches: 44, Mismatches: 6, Indels: 2 0.85 0.12 0.04 Matches are distributed among these distances: 54 38 0.86 55 6 0.14 ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37 Consensus pattern (54 bp): AAAATATCTAATGAGATACCGTTAAAAATATTGATATCATGTTAAAAATTTGGC Found at i:8478533 original size:20 final size:20 Alignment explanation
Indices: 8478505--8478582 Score: 70 Period size: 20 Copynumber: 4.0 Consensus size: 20 8478495 ATGAGATGCC * * 8478505 GTTAGAAATATTGATATCAT 1 GTTAAAAATATTGGTATCAT * 8478525 GTTAAAAAT-TTCGCTAT-AT 1 GTTAAAAATATT-GGTATCAT * * 8478544 GTTAGAAATATTGGTATCAC 1 GTTAAAAATATTGGTATCAT * * 8478564 ATTGAAAATATTGGTATCA 1 GTTAAAAATATTGGTATCA 8478583 CATTAGAAAT Statistics Matches: 47, Mismatches: 8, Indels: 6 0.77 0.13 0.10 Matches are distributed among these distances: 19 16 0.34 20 31 0.66 ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38 Consensus pattern (20 bp): GTTAAAAATATTGGTATCAT Found at i:8478592 original size:20 final size:20 Alignment explanation
Indices: 8478545--8478592 Score: 80 Period size: 20 Copynumber: 2.4 Consensus size: 20 8478535 TCGCTATATG 8478545 TTAGAAATATTGGTATCACA 1 TTAGAAATATTGGTATCACA 8478565 TT-GAAAATATTGGTATCACA 1 TTAG-AAATATTGGTATCACA 8478585 TTAGAAAT 1 TTAGAAAT 8478593 TTTGATATTT Statistics Matches: 26, Mismatches: 0, Indels: 4 0.87 0.00 0.13 Matches are distributed among these distances: 19 1 0.04 20 24 0.92 21 1 0.04 ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35 Consensus pattern (20 bp): TTAGAAATATTGGTATCACA Found at i:8482531 original size:24 final size:24 Alignment explanation
Indices: 8482479--8482534 Score: 76 Period size: 24 Copynumber: 2.3 Consensus size: 24 8482469 TTATCTCTTA * * 8482479 AGAGCTTACTGTTTTTAGCTCATT 1 AGAGCTTACTGTTTTCAGCTCATC * * 8482503 GGAGCTTACTGTTTTCAGCTCGTC 1 AGAGCTTACTGTTTTCAGCTCATC 8482527 AGAGCTTA 1 AGAGCTTA 8482535 GCATTTTAGC Statistics Matches: 27, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 24 27 1.00 ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39 Consensus pattern (24 bp): AGAGCTTACTGTTTTCAGCTCATC Found at i:8486231 original size:26 final size:26 Alignment explanation
Indices: 8486202--8486283 Score: 164 Period size: 26 Copynumber: 3.2 Consensus size: 26 8486192 TGATACAAAT 8486202 TGATAATGGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 8486228 TGATAATGGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 8486254 TGATAATGGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 8486280 TGAT 1 TGAT 8486284 GGGAATTTCA Statistics Matches: 56, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 26 56 1.00 ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35 Consensus pattern (26 bp): TGATAATGGGTTAGGTAAATGTTCCA Found at i:8487941 original size:27 final size:26 Alignment explanation
Indices: 8487901--8488040 Score: 174 Period size: 27 Copynumber: 5.2 Consensus size: 26 8487891 AGGAAGCGTC * 8487901 CTGGTGGCTATGCCACAATTATCTGAT 1 CTGGTGGCTCTGCCAC-ATTATCTGAT * 8487928 CTGGTGGCTCTGCCACATATAT-TGTT 1 CTGGTGGCTCTGCCACAT-TATCTGAT * 8487954 CTGGTGGCTATGCCACGATTATCTGAT 1 CTGGTGGCTCTGCCAC-ATTATCTGAT * 8487981 CTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTCTGCCACAT-TATCTGAT * * 8488008 CTAGTGGCTCTGCCACAATATCTGTAT 1 CTGGTGGCTCTGCCACATTATCTG-AT 8488035 CTGGTG 1 CTGGTG 8488041 ACTTCGTCAC Statistics Matches: 98, Mismatches: 10, Indels: 10 0.83 0.08 0.08 Matches are distributed among these distances: 26 31 0.32 27 67 0.68 ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35 Consensus pattern (26 bp): CTGGTGGCTCTGCCACATTATCTGAT Found at i:8487981 original size:53 final size:53 Alignment explanation
Indices: 8487901--8488040 Score: 219 Period size: 53 Copynumber: 2.6 Consensus size: 53 8487891 AGGAAGCGTC 8487901 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT-TGTT 1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 8487954 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT * * * 8488008 CTAGTGGCTCTGCCACAATATCTGTATCTGGTG 1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG 8488041 ACTTCGTCAC Statistics Matches: 81, Mismatches: 4, Indels: 3 0.92 0.05 0.03 Matches are distributed among these distances: 53 55 0.68 54 26 0.32 ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35 Consensus pattern (53 bp): CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT Found at i:8493338 original size:25 final size:26 Alignment explanation
Indices: 8493297--8493402 Score: 189 Period size: 25 Copynumber: 4.2 Consensus size: 26 8493287 TGATACAAAT 8493297 TGATAATGGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA * 8493323 TGATAAT-GGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTCCA 8493348 TGATAATGGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 8493374 TGATAAT-GGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 8493399 TGAT 1 TGAT 8493403 GGAATTTCAT Statistics Matches: 77, Mismatches: 2, Indels: 3 0.94 0.02 0.04 Matches are distributed among these distances: 25 46 0.60 26 31 0.40 ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37 Consensus pattern (26 bp): TGATAATGGGTTAGGTAAATGTTCCA Found at i:8493352 original size:51 final size:51 Alignment explanation
Indices: 8493297--8493402 Score: 203 Period size: 51 Copynumber: 2.1 Consensus size: 51 8493287 TGATACAAAT * 8493297 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA 8493348 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA 8493399 TGAT 1 TGAT 8493403 GGAATTTCAT Statistics Matches: 54, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 51 54 1.00 ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37 Consensus pattern (51 bp): TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA Found at i:8495047 original size:27 final size:26 Alignment explanation
Indices: 8495007--8495147 Score: 174 Period size: 27 Copynumber: 5.2 Consensus size: 26 8494997 AGGAAGCGTC * 8495007 CTGGTGGCTATGCCACAATTATCTGAT 1 CTGGTGGCTCTGCCAC-ATTATCTGAT * * 8495034 CTGGTGGCTCTGCCACATATATTTGTT 1 CTGGTGGCTCTGCCACAT-TATCTGAT * 8495061 CTGGTGGCTATGCCACGATTATCTGAT 1 CTGGTGGCTCTGCCAC-ATTATCTGAT * 8495088 CTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTCTGCCACAT-TATCTGAT * 8495115 CTGGTGGCTCTGCCACAATATCTGTAT 1 CTGGTGGCTCTGCCACATTATCTG-AT * 8495142 TTGGTG 1 CTGGTG 8495148 ACTTCGTCAC Statistics Matches: 99, Mismatches: 11, Indels: 8 0.84 0.09 0.07 Matches are distributed among these distances: 26 10 0.10 27 87 0.88 28 2 0.02 ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36 Consensus pattern (26 bp): CTGGTGGCTCTGCCACATTATCTGAT Found at i:8495089 original size:54 final size:53 Alignment explanation
Indices: 8495007--8495147 Score: 219 Period size: 54 Copynumber: 2.6 Consensus size: 53 8494997 AGGAAGCGTC * 8495007 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTTGTT 1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 8495061 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT * * * 8495115 CTGGTGGCTCTGCCACAATATCTGTATTTGGTG 1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG 8495148 ACTTCGTCAC Statistics Matches: 81, Mismatches: 5, Indels: 2 0.92 0.06 0.02 Matches are distributed among these distances: 53 7 0.09 54 74 0.91 ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36 Consensus pattern (53 bp): CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT Found at i:8501126 original size:15 final size:16 Alignment explanation
Indices: 8501106--8501145 Score: 57 Period size: 15 Copynumber: 2.6 Consensus size: 16 8501096 AAAAAAAATC 8501106 TTATTTTATTTTTA-T 1 TTATTTTATTTTTACT 8501121 TTATTTTA-TTTTACT 1 TTATTTTATTTTTACT 8501136 TTGATTTTAT 1 TT-ATTTTAT 8501146 GTTAAATTAG Statistics Matches: 22, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 14 5 0.23 15 11 0.50 16 6 0.27 ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75 Consensus pattern (16 bp): TTATTTTATTTTTACT Found at i:8503428 original size:2 final size:2 Alignment explanation
Indices: 8503421--8503446 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 8503411 TCAATCTCAC 8503421 AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 8503447 CACATACCTG Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:8503745 original size:38 final size:38 Alignment explanation
Indices: 8503568--8503762 Score: 212 Period size: 38 Copynumber: 5.0 Consensus size: 38 8503558 AAACCCAAAC * * * * 8503568 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT 1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT * * * * 8503608 ATAGTACCAACACTAGGCCTGCGGGATTTAACCCGGAT 1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT * * 8503646 ATAATACCAGCACGAAGCTTGCGGGATTTAACCTGGAT 1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT * 8503684 ATAATACCAGCACGAAGCTTGCGGGATTTAACCCGGAT 1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT * * * 8503722 ATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT 1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGAT 8503762 A 1 A 8503763 CACATCAAAT Statistics Matches: 133, Mismatches: 19, Indels: 6 0.84 0.12 0.04 Matches are distributed among these distances: 37 1 0.01 38 96 0.72 39 8 0.06 40 28 0.21 ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22 Consensus pattern (38 bp): ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT Found at i:8514856 original size:24 final size:24 Alignment explanation
Indices: 8514824--8514876 Score: 88 Period size: 24 Copynumber: 2.2 Consensus size: 24 8514814 CACAGGAGGA * * 8514824 TCATCAATGTTTGCACTTTCTGGT 1 TCATTAATGTTTGCACTTTCTAGT 8514848 TCATTAATGTTTGCACTTTCTAGT 1 TCATTAATGTTTGCACTTTCTAGT 8514872 TCATT 1 TCATT 8514877 TTCAGCTGGT Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 24 27 1.00 ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49 Consensus pattern (24 bp): TCATTAATGTTTGCACTTTCTAGT Found at i:8526267 original size:239 final size:241 Alignment explanation
Indices: 8525848--8526329 Score: 828 Period size: 239 Copynumber: 2.0 Consensus size: 241 8525838 TGGATTTTTT 8525848 ATGTTTCAATATAATATTAATAGGTTTCAAACCAAGACTTTAGTGGGAACTACAAATAAATATGA 1 ATGTTTCAATATAATATTAATAGGTTTCAAACCAAGACTTTAGTGGGAACTACAAATAAATATGA * 8525913 CATTTTTTTATTAAGTTCTCCTTTTTTTTAAAAGGAATTTATCTAAAATTTTGATAAAATTATGG 66 CA-TTTTTTATTAAGTTCTCCTTTTTTTTAAAAGGAATTTATCTAAAATTTTGATAAAATTATGA * 8525978 GGGACCAATTGTGATAATATTTCATTTTTTCCGAAGCATAGAAACAAGTTGTTTTTATGCTCAAC 130 GGGACCAATTGTGATAATATTTCATTTTTTCCGAAGCATAGAAACAAGTTGTTCTTATGCTCAAC 8526043 TATATGTAAAATAGAA-T-TAC-TAGCTCTAAGCATCTTAATTATCC 195 TATATGTAAAATAGAATTATACTTAGCTCTAAGCATCTTAATTATCC * 8526087 ATGTTTCAATATAATATTAATAGGTTTCAAACCAAGACTTTAGTGGGAACTACAAATAAATATGT 1 ATGTTTCAATATAATATTAATAGGTTTCAAACCAAGACTTTAGTGGGAACTACAAATAAATATGA * * * 8526152 CA-TTTTTATTAATTTCTCCTCTTTTTTTTTACAGGAATTTATCTAAAATTTTGATAAAATTATG 66 CATTTTTTATTAAGTTCT-C-CTTTTTTTTAAAAGGAATTTATCTAAAATTTTGATAAAATTATG * 8526216 AGGGACCAATTGTGATAGTATTTCATTTTTTCCGAAGCATAGAAACAAGTTGTTCTTATGCTCAA 129 AGGGACCAATTGTGATAATATTTCATTTTTTCCGAAGCATAGAAACAAGTTGTTCTTATGCTCAA 8526281 CTATATGTAAAATAGAATTACTACTTTAGCTCTAAGCATCTTAATTATC 194 CTATATGTAAAATAGAATTA-TAC-TTAGCTCTAAGCATCTTAATTATC 8526330 ACTTGCACAT Statistics Matches: 229, Mismatches: 7, Indels: 9 0.93 0.03 0.04 Matches are distributed among these distances: 237 14 0.06 238 1 0.00 239 187 0.82 240 1 0.00 242 3 0.01 244 23 0.10 ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40 Consensus pattern (241 bp): ATGTTTCAATATAATATTAATAGGTTTCAAACCAAGACTTTAGTGGGAACTACAAATAAATATGA CATTTTTTATTAAGTTCTCCTTTTTTTTAAAAGGAATTTATCTAAAATTTTGATAAAATTATGAG GGACCAATTGTGATAATATTTCATTTTTTCCGAAGCATAGAAACAAGTTGTTCTTATGCTCAACT ATATGTAAAATAGAATTATACTTAGCTCTAAGCATCTTAATTATCC Found at i:8526928 original size:6 final size:6 Alignment explanation
Indices: 8526917--8526944 Score: 56 Period size: 6 Copynumber: 4.7 Consensus size: 6 8526907 TTATTTAGTT 8526917 TTTTTA TTTTTA TTTTTA TTTTTA TTTT 1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT 8526945 ATTAATTTAG Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 22 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (6 bp): TTTTTA Found at i:8526953 original size:13 final size:11 Alignment explanation
Indices: 8526902--8526947 Score: 56 Period size: 12 Copynumber: 3.9 Consensus size: 11 8526892 AAAGAAGATA 8526902 TTATTTTATTT 1 TTATTTTATTT * 8526913 AGTTTTTTTATTT 1 --TTATTTTATTT 8526926 TTATTTTTATTT 1 TTA-TTTTATTT 8526938 TTATTTTATT 1 TTATTTTATT 8526948 AATTTAGCTT Statistics Matches: 30, Mismatches: 2, Indels: 4 0.83 0.06 0.11 Matches are distributed among these distances: 11 9 0.30 12 11 0.37 13 10 0.33 ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80 Consensus pattern (11 bp): TTATTTTATTT Found at i:8536586 original size:25 final size:25 Alignment explanation
Indices: 8536556--8536606 Score: 102 Period size: 25 Copynumber: 2.0 Consensus size: 25 8536546 ATTATTTTCC 8536556 AAAGTTTGTCACTTTCATACAATTT 1 AAAGTTTGTCACTTTCATACAATTT 8536581 AAAGTTTGTCACTTTCATACAATTT 1 AAAGTTTGTCACTTTCATACAATTT 8536606 A 1 A 8536607 GAGGAATAAT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 25 26 1.00 ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43 Consensus pattern (25 bp): AAAGTTTGTCACTTTCATACAATTT Found at i:8540969 original size:23 final size:24 Alignment explanation
Indices: 8540933--8540978 Score: 76 Period size: 23 Copynumber: 2.0 Consensus size: 24 8540923 TATATACTAA 8540933 ATATATATATTTTTATTTTTAATC 1 ATATATATATTTTTATTTTTAATC * 8540957 ATATTTATA-TTTTATTTTTAAT 1 ATATATATATTTTTATTTTTAAT 8540979 TTTAATATGA Statistics Matches: 21, Mismatches: 1, Indels: 1 0.91 0.04 0.04 Matches are distributed among these distances: 23 13 0.62 24 8 0.38 ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65 Consensus pattern (24 bp): ATATATATATTTTTATTTTTAATC Found at i:8542931 original size:18 final size:18 Alignment explanation
Indices: 8542879--8542931 Score: 79 Period size: 18 Copynumber: 2.9 Consensus size: 18 8542869 CGTTTACAGT * * * 8542879 ACTATTTACGCATACGAC 1 ACTATTCACGTATACGGC 8542897 ACTATTCACGTATACGGC 1 ACTATTCACGTATACGGC 8542915 ACTATTCACGTATACGG 1 ACTATTCACGTATACGG 8542932 TAGTTGGGAT Statistics Matches: 32, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 18 32 1.00 ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28 Consensus pattern (18 bp): ACTATTCACGTATACGGC Found at i:8549134 original size:13 final size:13 Alignment explanation
Indices: 8549116--8549150 Score: 52 Period size: 13 Copynumber: 2.7 Consensus size: 13 8549106 ATTAAACTTT * 8549116 TCAAAAATATTTC 1 TCAAAAACATTTC * 8549129 TCAAAAACATTTT 1 TCAAAAACATTTC 8549142 TCAAAAACA 1 TCAAAAACA 8549151 AGCCTAAATT Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 13 20 1.00 ACGTcount: A:0.51, C:0.17, G:0.00, T:0.31 Consensus pattern (13 bp): TCAAAAACATTTC Found at i:8558041 original size:13 final size:13 Alignment explanation
Indices: 8558023--8558048 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 8558013 GAGATGACTA 8558023 AAATTTTAAAATT 1 AAATTTTAAAATT 8558036 AAATTTTAAAATT 1 AAATTTTAAAATT 8558049 TGAAAAGTAC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (13 bp): AAATTTTAAAATT Found at i:8566601 original size:21 final size:21 Alignment explanation
Indices: 8566575--8566615 Score: 64 Period size: 21 Copynumber: 2.0 Consensus size: 21 8566565 AGACGAGCGA * * 8566575 TACTCCACAGCAGGTGGAGTG 1 TACTCCAAAACAGGTGGAGTG 8566596 TACTCCAAAACAGGTGGAGT 1 TACTCCAAAACAGGTGGAGT 8566616 TTGAGCAGAT Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 21 18 1.00 ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20 Consensus pattern (21 bp): TACTCCAAAACAGGTGGAGTG Found at i:8571192 original size:12 final size:12 Alignment explanation
Indices: 8571175--8571207 Score: 66 Period size: 12 Copynumber: 2.8 Consensus size: 12 8571165 TTATTAAATC 8571175 AATCTTTGATAA 1 AATCTTTGATAA 8571187 AATCTTTGATAA 1 AATCTTTGATAA 8571199 AATCTTTGA 1 AATCTTTGA 8571208 CTATAAAGGT Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 21 1.00 ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42 Consensus pattern (12 bp): AATCTTTGATAA Found at i:8572827 original size:17 final size:18 Alignment explanation
Indices: 8572804--8572846 Score: 56 Period size: 17 Copynumber: 2.5 Consensus size: 18 8572794 CGAGTAAAAA 8572804 TATAATTTTAT-TAT-TT 1 TATAATTTTATATATCTT 8572820 TAATAA-TTTATATATCTT 1 T-ATAATTTTATATATCTT 8572838 TATAATTTT 1 TATAATTTT 8572847 TTAAAAATTA Statistics Matches: 23, Mismatches: 0, Indels: 6 0.79 0.00 0.21 Matches are distributed among these distances: 16 6 0.26 17 11 0.48 18 6 0.26 ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63 Consensus pattern (18 bp): TATAATTTTATATATCTT Found at i:8577406 original size:2 final size:2 Alignment explanation
Indices: 8577399--8577432 Score: 68 Period size: 2 Copynumber: 17.0 Consensus size: 2 8577389 AATAAAACTA 8577399 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 8577433 GTGTGTGTTT Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 32 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:8577524 original size:94 final size:93 Alignment explanation
Indices: 8577341--8577524 Score: 278 Period size: 94 Copynumber: 2.0 Consensus size: 93 8577331 AGGTGGCCCT * * 8577341 TGTGTGTTTTGACTTAATGGACACTTTCCGTGTGTTTCCTATCTTTTCAATAAAACTAATATATA 1 TGTGTGTTTTCACTTAATGGACACTTTCCGTGTGTTTCCAATCTTTTCAATAAAACTAATATATA * * * 8577406 TATATATATATATATATATATATATATG 66 TATATATATAGATACACATATATATATG * * * 8577434 TGTGTGTTTTCTCTTAATGGACACTTTCTGTGTGTTTCCCAATCTTTTCAATAAAACTAATCTAT 1 TGTGTGTTTTCACTTAATGGACACTTTCCGTGTGTTT-CCAATCTTTTCAATAAAACTAATATAT * 8577499 ATATATATATAGATACACATTTATAT 65 ATATATATATAGATACACATATATAT 8577525 CAAACATATA Statistics Matches: 81, Mismatches: 9, Indels: 1 0.89 0.10 0.01 Matches are distributed among these distances: 93 34 0.42 94 47 0.58 ACGTcount: A:0.31, C:0.13, G:0.10, T:0.46 Consensus pattern (93 bp): TGTGTGTTTTCACTTAATGGACACTTTCCGTGTGTTTCCAATCTTTTCAATAAAACTAATATATA TATATATATAGATACACATATATATATG Found at i:8577681 original size:25 final size:25 Alignment explanation
Indices: 8577647--8577697 Score: 93 Period size: 25 Copynumber: 2.0 Consensus size: 25 8577637 TCGCATTTAT * 8577647 TTCATATTTATTTATAATGACTTAC 1 TTCATATTTATTTAAAATGACTTAC 8577672 TTCATATTTATTTAAAATGACTTAC 1 TTCATATTTATTTAAAATGACTTAC 8577697 T 1 T 8577698 AGACTATGAA Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 25 1.00 ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51 Consensus pattern (25 bp): TTCATATTTATTTAAAATGACTTAC Found at i:8587911 original size:17 final size:18 Alignment explanation
Indices: 8587878--8587911 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 8587868 GCTATTTGTA 8587878 AATTTACTTTTGAGTAGG 1 AATTTACTTTTGAGTAGG * 8587896 AATTTATTTTTG-GTAG 1 AATTTACTTTTGAGTAG 8587912 CACTACAGGA Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 4 0.27 18 11 0.73 ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50 Consensus pattern (18 bp): AATTTACTTTTGAGTAGG Found at i:8588230 original size:42 final size:43 Alignment explanation
Indices: 8588046--8588244 Score: 199 Period size: 42 Copynumber: 4.7 Consensus size: 43 8588036 CGTTTATTTA * ** * 8588046 CAAAAATGCCGCTAAAGACCATGATTTTTAGCGGCGCTTTTCC 1 CAAAAATGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCT * * * 8588089 CACAAAT-TTCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCT 1 CAAAAATGCT-GCTAAAGACCATGACCTTTAGCGGCGCTTTTCT * * 8588132 -AAAAAAG-TCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCT 1 CAAAAATGCT-GCTAAAGACCATGACCTTTAGCGGCGCTTTTCT * * * * * 8588174 CAAAAACGCCGCT-AAGACCACGACCTTTAGCGGAGCTTTTTT 1 CAAAAATGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCT * * * 8588216 CACAAATGCTGCTAAAAACCATAACCTTT 1 CAAAAATGCTGCTAAAGACCATGACCTTT 8588245 TGCGACACTT Statistics Matches: 128, Mismatches: 23, Indels: 10 0.80 0.14 0.06 Matches are distributed among these distances: 42 72 0.56 43 56 0.44 ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28 Consensus pattern (43 bp): CAAAAATGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCT Found at i:8588230 original size:85 final size:85 Alignment explanation
Indices: 8588047--8588259 Score: 225 Period size: 85 Copynumber: 2.5 Consensus size: 85 8588037 GTTTATTTAC * * * *** * * 8588047 AAAAATGCCGCTAAAGACCATGATTTTTAGCGGCGCTTTTCCCACAAATTTCGCTAAAGATCATG 1 AAAAATGCTGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGACCACG * 8588112 ACCTTTAGCGGCGCTTTTCT 66 ACCTTTAGCGGAGCTTTTCT * * 8588132 AAAAAAG-TCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCTCAAAAACGCCGCT-AAGACCAC 1 AAAAATGCT-GCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGACCAC * 8588195 GACCTTTAGCGGAGCTTTTTT 65 GACCTTTAGCGGAGCTTTTCT * * * * * 8588216 CACAAATGCTGCTAAAAACCATAACCTTTT-GCGACACTTTTCCC 1 -AAAAATGCTGCTAAAGACCATGA-CTTTTAGCGGCGCTTTTCCC 8588260 GCAAACGGCA Statistics Matches: 105, Mismatches: 19, Indels: 8 0.80 0.14 0.06 Matches are distributed among these distances: 84 25 0.24 85 74 0.70 86 6 0.06 ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28 Consensus pattern (85 bp): AAAAATGCTGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGACCACG ACCTTTAGCGGAGCTTTTCT Found at i:8591148 original size:12 final size:12 Alignment explanation
Indices: 8591128--8591165 Score: 67 Period size: 12 Copynumber: 3.2 Consensus size: 12 8591118 TTTGAGAGTA * 8591128 AAAGGAGATGAG 1 AAAGAAGATGAG 8591140 AAAGAAGATGAG 1 AAAGAAGATGAG 8591152 AAAGAAGATGAG 1 AAAGAAGATGAG 8591164 AA 1 AA 8591166 GCGGGTAACC Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 12 25 1.00 ACGTcount: A:0.58, C:0.00, G:0.34, T:0.08 Consensus pattern (12 bp): AAAGAAGATGAG Found at i:8591756 original size:15 final size:15 Alignment explanation
Indices: 8591723--8591765 Score: 54 Period size: 15 Copynumber: 3.0 Consensus size: 15 8591713 TTATCTCTTA * 8591723 CATAA-CCATAAA-T 1 CATAATCCATAAACC * 8591736 CATAATCCCTAAACC 1 CATAATCCATAAACC 8591751 CATAATCCATAAACC 1 CATAATCCATAAACC 8591766 TTAAAATAAT Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 13 5 0.20 14 6 0.24 15 14 0.56 ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21 Consensus pattern (15 bp): CATAATCCATAAACC Found at i:8591770 original size:22 final size:22 Alignment explanation
Indices: 8591728--8591770 Score: 52 Period size: 22 Copynumber: 2.0 Consensus size: 22 8591718 TCTTACATAA * 8591728 CCATAAATCATAATCCCTAAAC 1 CCATAAATCATAAACCCTAAAC * 8591750 CCAT-AATCCATAAACCTTAAA 1 CCATAAAT-CATAAACCCTAAA 8591771 ATAATAGCTC Statistics Matches: 18, Mismatches: 2, Indels: 2 0.82 0.09 0.09 Matches are distributed among these distances: 21 3 0.17 22 15 0.83 ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23 Consensus pattern (22 bp): CCATAAATCATAAACCCTAAAC Found at i:8591933 original size:7 final size:7 Alignment explanation
Indices: 8591898--8592025 Score: 66 Period size: 7 Copynumber: 18.0 Consensus size: 7 8591888 ACTAATTAAT 8591898 CTAAACC 1 CTAAACC * 8591905 TTAAACTC 1 CTAAAC-C * 8591913 CTAATCC 1 CTAAACC * 8591920 ATAAACC 1 CTAAACC * 8591927 TTAAACC 1 CTAAACC * 8591934 CTAAAAC 1 CTAAACC * 8591941 ATAAACC 1 CTAAACC 8591948 CTAAACC 1 CTAAACC * 8591955 CTGAACCC 1 CT-AAACC * 8591963 CT-CACC 1 CTAAACC * 8591969 CTTAACCC 1 C-TAAACC 8591977 CT-AACC 1 CTAAACC * 8591983 CTTAACCC 1 C-TAAACC 8591991 CT-AACAC 1 CTAAAC-C 8591998 CTAAACC 1 CTAAACC * 8592005 TTAAACC 1 CTAAACC * 8592012 C-CAACC 1 CTAAACC 8592018 CTTAAACC 1 C-TAAACC 8592026 ACCTTTAAAC Statistics Matches: 88, Mismatches: 23, Indels: 19 0.68 0.18 0.15 Matches are distributed among these distances: 6 14 0.16 7 49 0.56 8 25 0.28 ACGTcount: A:0.38, C:0.41, G:0.01, T:0.20 Consensus pattern (7 bp): CTAAACC Found at i:8591943 original size:21 final size:21 Alignment explanation
Indices: 8591899--8591956 Score: 80 Period size: 21 Copynumber: 2.7 Consensus size: 21 8591889 CTAATTAATC ** 8591899 TAAACCTTAAACTCCTAATCCA 1 TAAACCTTAAAC-CCTAAAACA 8591921 TAAACCTTAAACCCTAAAACA 1 TAAACCTTAAACCCTAAAACA * 8591942 TAAACCCTAAACCCT 1 TAAACCTTAAACCCT 8591957 GAACCCCTCA Statistics Matches: 33, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 21 21 0.64 22 12 0.36 ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22 Consensus pattern (21 bp): TAAACCTTAAACCCTAAAACA Found at i:8591969 original size:14 final size:14 Alignment explanation
Indices: 8591946--8591995 Score: 73 Period size: 14 Copynumber: 3.5 Consensus size: 14 8591936 AAAACATAAA * 8591946 CCCTAAACCCTGAAC 1 CCCT-AACCCTTAAC * 8591961 CCCTCACCCTTAAC 1 CCCTAACCCTTAAC 8591975 CCCTAACCCTTAAC 1 CCCTAACCCTTAAC 8591989 CCCTAAC 1 CCCTAAC 8591996 ACCTAAACCT Statistics Matches: 32, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 14 28 0.88 15 4 0.12 ACGTcount: A:0.28, C:0.52, G:0.02, T:0.18 Consensus pattern (14 bp): CCCTAACCCTTAAC Found at i:8592729 original size:39 final size:39 Alignment explanation
Indices: 8592603--8592741 Score: 145 Period size: 39 Copynumber: 3.5 Consensus size: 39 8592593 ACTTTGCAAA * * * 8592603 ATTCTTTTGCGGCGTTTTTTAAAAAGCGCCGCTAAAGGT- 1 ATTCTTTAGCGGCG-TTTTTAAAAAGCGCCGCTAATGCTC * * * * 8592642 GTACTTATAGCGGCCTTTCTTAAAAAAGCGCCGCTAATACTC 1 ATTCTT-TAGCGGCGTTT-TT-AAAAAGCGCCGCTAATGCTC * * 8592684 AATCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTC 1 ATTCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAATGCTC * 8592723 ATTCTTTAGTGGCGTTTTT 1 ATTCTTTAGCGGCGTTTTT 8592742 CATTCAAACG Statistics Matches: 81, Mismatches: 15, Indels: 8 0.78 0.14 0.08 Matches are distributed among these distances: 39 42 0.52 40 10 0.12 41 26 0.32 42 3 0.04 ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35 Consensus pattern (39 bp): ATTCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAATGCTC Found at i:8592858 original size:29 final size:31 Alignment explanation
Indices: 8592798--8592862 Score: 80 Period size: 29 Copynumber: 2.2 Consensus size: 31 8592788 CAATAGTAGA * * 8592798 ATATAATTTTATAAATTTTTAGAGTTTTTAT 1 ATATAATTTTATAAATTTTTAGAATTTATAT * * 8592829 ATATCATTTTA-ATATTTTTA-AATTTATAT 1 ATATAATTTTATAAATTTTTAGAATTTATAT 8592858 ATATA 1 ATATA 8592863 TTATTTTCTA Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 29 11 0.38 30 8 0.28 31 10 0.34 ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57 Consensus pattern (31 bp): ATATAATTTTATAAATTTTTAGAATTTATAT Found at i:8604684 original size:39 final size:39 Alignment explanation
Indices: 8604630--8604852 Score: 322 Period size: 39 Copynumber: 5.7 Consensus size: 39 8604620 AATGTTCGGA 8604630 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * 8604669 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * 8604708 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * 8604747 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTCG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * * ** * 8604786 TGATATCCGGGTTAAGTCCCGATGGCCTTTGTGCGAGTTAC 1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTT-G * * 8604827 T-ATAACCGGGCTATGTCCCGAAGGCA 1 TGATATCCGGGCTAAG-CCCGAAGGCA 8604853 TTTGGACGAG Statistics Matches: 166, Mismatches: 16, Indels: 3 0.90 0.09 0.02 Matches are distributed among these distances: 39 127 0.77 40 38 0.23 41 1 0.01 ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25 Consensus pattern (39 bp): TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG Found at i:8612923 original size:39 final size:39 Alignment explanation
Indices: 8612869--8613052 Score: 226 Period size: 39 Copynumber: 4.7 Consensus size: 39 8612859 AATTTTCGGA * 8612869 TGATATCCGGGCTAAGCCCGAAGGCAATTATGCGAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * * 8612908 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCTAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * 8612947 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTCG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG * * ** * * 8612986 TGATATCTGGGTTAAGTCCCGAAGGCCTTTGTGCAAGTTAC 1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTT-G * * 8613027 T-ATAACCGGGCTATGTCCCGAAGGCA 1 TGATATCCGGGCTAAG-CCCGAAGGCA 8613053 TTTGGACGAG Statistics Matches: 125, Mismatches: 18, Indels: 3 0.86 0.12 0.02 Matches are distributed among these distances: 39 86 0.69 40 38 0.30 41 1 0.01 ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25 Consensus pattern (39 bp): TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG Found at i:8615894 original size:24 final size:23 Alignment explanation
Indices: 8615849--8615896 Score: 62 Period size: 24 Copynumber: 2.0 Consensus size: 23 8615839 GTTGCTTGTG 8615849 AAAGAAACAAACAGAACTTTGCAA 1 AAAGAAACAAACAGAAC-TTGCAA 8615873 AAAGAAACAATAACAGAA-TTGCAA 1 AAAGAAAC-A-AACAGAACTTGCAA 8615897 GCAAGAAATA Statistics Matches: 22, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 24 14 0.64 25 1 0.05 26 7 0.32 ACGTcount: A:0.60, C:0.15, G:0.12, T:0.12 Consensus pattern (23 bp): AAAGAAACAAACAGAACTTGCAA Found at i:8618379 original size:40 final size:40 Alignment explanation
Indices: 8618335--8618561 Score: 337 Period size: 40 Copynumber: 5.7 Consensus size: 40 8618325 CCAACCCAAT * * ** * 8618335 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA 1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA * * * 8618375 TGCCTTCGGGACTTAATCCAGAAATAGCAACCAGCACGAA 1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA * * 8618415 TGCCTTCGAGACTTAACCCGAAAATAACAACCAGCACGAA 1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA * 8618455 TGCCTTCGGGACTTAACCCAGAAATAACAACCAGCACGAA 1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA * 8618495 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA 1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA * 8618535 TGCCTTCGGGACTTAACCCGGATATAA 1 TGCCTTCGGGACTTAACCCGGAAATAA 8618562 TCCTCAATTG Statistics Matches: 168, Mismatches: 19, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 40 168 1.00 ACGTcount: A:0.34, C:0.28, G:0.19, T:0.18 Consensus pattern (40 bp): TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA Found at i:8619643 original size:15 final size:15 Alignment explanation
Indices: 8619623--8619652 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 8619613 ACATAATTTA 8619623 TTCAGCTTCTAACTC 1 TTCAGCTTCTAACTC 8619638 TTCAGCTTCTAACTC 1 TTCAGCTTCTAACTC 8619653 GACTCCCACA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40 Consensus pattern (15 bp): TTCAGCTTCTAACTC Found at i:8624285 original size:3 final size:3 Alignment explanation
Indices: 8624266--8624499 Score: 135 Period size: 3 Copynumber: 77.3 Consensus size: 3 8624256 GGCAATAAAG * * * * 8624266 AAT AAT GAT AGT AAT AAT AAT AAT -AT AAT GAT AA- AA- AAC AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT * * * * * * 8624311 AA- AAGG AAC AAA AAT AAT AGT AAT AAT AA- AGAT ATTT AAT AAT AGT 1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT * * 8624357 AAT AAT AAC AAT AAT -AT AAAT AAT AAT ATAT ACAT AAA AAT AAT AATT 1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT A-AT A-AT AAT AAT AAT AA-T ** * * ** * 8624405 GTT AGA- AAT AA- AA- AAT AAT GGAAGT AGT AAT AAC AAT GGT AAG AAT 1 AAT A-AT AAT AAT AAT AAT AAT --AA-T AAT AAT AAT AAT AAT AAT AAT 8624451 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 8624499 A 1 A 8624500 TATTTAATTC Statistics Matches: 179, Mismatches: 36, Indels: 32 0.72 0.15 0.13 Matches are distributed among these distances: 2 16 0.09 3 145 0.81 4 15 0.08 5 2 0.01 6 1 0.01 ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29 Consensus pattern (3 bp): AAT Found at i:8626212 original size:44 final size:43 Alignment explanation
Indices: 8626150--8626917 Score: 173 Period size: 43 Copynumber: 17.7 Consensus size: 43 8626140 AATCTTTAGC * * 8626150 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTCGTTACTTTTGAT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTC-TTACATTTGAT * ** * * * 8626194 CTGTTTCCCTACTACTTAGGATGATAA-GATCTGTAAATTTGA- 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCT-TACATTTGAT * * * * * 8626236 CTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATCACCTTCGAT 1 C-TGTTACCCTACTACTTAGGGGGTTAAGGCTC-TTACATTTGAT * * * * 8626281 CTGTTTCCCTA-T-CGTTTAGGGGGTTAA-GATC-TGCAATTTGGT 1 CTGTTACCCTACTAC--TTAGGGGGTTAAGGCTCTTAC-ATTTGAT * ** * * * * 8626323 CTGTTACCTTACTGTTTAGGGGTTTAAGACCCTT-CGTTTTCGAT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCTTAC-ATTT-GAT * * * * * * 8626367 CTGTTTCCCTACTGCTTAGGGTGTTAA-GATC-TACAAATTCGGT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCTTAC--ATTTGAT * * ** * * 8626410 CTGTTACCCTACTGCTTAGGGGTTTAAGG-TCCATCGCCTTCGAT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCT-C-TTACATTTGAT * * * * * * 8626454 CTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTA-AATTCAGC 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCT-TACATTTGA-T * * * * ** * * 8626497 CTGTTACCCTACTGCTTAGGGGTTTAAGCCTGTCGCCTTCGAT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCTTACATTTGAT * * * * * * * 8626540 CTGCT-CCACTACTGCTTAGGGAGATAA-GATC-TGCAATTTGGT 1 CTGTTACC-CTACTACTTAGGGGGTTAAGGCTCTTAC-ATTTGAT * * * * 8626582 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTT-CGTCTTCGAT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCTTACAT-TT-GAT ** * * * * * 8626626 CTACT-CCACTACTGCTTAGGGAGATAA-GATCTGTA-ATTTGGT 1 CTGTTACC-CTACTACTTAGGGGGTTAAGGCTCT-TACATTTGAT * * * * ** * 8626668 CTGTTACCCAACTGCTTAGGGGTTTAAGGCCCATCGCTTTTGAT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTC-TTACATTTGAT * * * * * ** * 8626712 CTATTTCCCTACTGCTTAGGGGGTTTA-GATCTGTACATTCAAC 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCT-TACATTTGAT ** ** * * 8626755 CTGTTACCCTACTGTTTAGGGATTTAAGG-TCTGTAAATTTG-G 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCTCT-TACATTTGAT * * * 8626797 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCAT-CATCTTTGAT 1 C-TGTTACCCTACTACTTAGGGGGTTAAGGCTCTTACA--TTTGAT * * * * * * * 8626842 CTATTTCCCTACTGCTTAGGGTGG-TAA-GATCTGTAGATATTTAGC 1 CTGTTACCCTACTACTTAGGG-GGTTAAGGCTCT-TACAT-TTGA-T * * 8626887 CTGCTACCCTACTGCTTAGGGGGTTAAGGCT 1 CTGTTACCCTACTACTTAGGGGGTTAAGGCT 8626918 TGGTGGTTTG Statistics Matches: 515, Mismatches: 157, Indels: 102 0.67 0.20 0.13 Matches are distributed among these distances: 41 3 0.01 42 82 0.16 43 200 0.39 44 200 0.39 45 27 0.05 46 3 0.01 ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36 Consensus pattern (43 bp): CTGTTACCCTACTACTTAGGGGGTTAAGGCTCTTACATTTGAT Found at i:8626368 original size:86 final size:86 Alignment explanation
Indices: 8626150--8626783 Score: 629 Period size: 86 Copynumber: 7.3 Consensus size: 86 8626140 AATCTTTAGC * * * * 8626150 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTCGTTAC-T-TTTGATCTGTTTCCCTACTACTTAG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGGC-CCTT-CGTCTTCGATCTGTTTCCCTACTGCTTAG ** * * * * 8626213 GATGATAAGATCTGTAAATT-TGA 64 GGGGTTAAGATCTG-CAATTCGGT * * * * ** * 8626236 CTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATCACCTTCGATCTGTTTCCCTA-TCGTTTAG 1 C-TGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACT-GCTTAG * 8626300 GGGGTTAAGATCTGCAATTTGGT 64 GGGGTTAAGATCTGCAATTCGGT * * * * 8626323 CTGTTACCTTACTGTTTAGGGGTTTAAGACCCTTCGTTTTCGATCTGTTTCCCTACTGCTTAGGG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG * * 8626388 TGTTAAGATCTACAAATTCGGT 66 GGTTAAGATCTGC-AATTCGGT * * * 8626410 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG * * * 8626475 GGTTAAGATCTGTAAATTCAGC 66 GGTTAAGATCTG-CAATTCGGT * * 8626497 CTGTTACCCTACTGCTTAGGGGTTTAA-G-CCTGTCGCCTTCGATCTG-CTCCACTACTGCTTAG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTCGATCTGTTTCC-CTACTGCTTAG * * * 8626559 GGAGATAAGATCTGCAATTTGGT 64 GGGGTTAAGATCTGCAATTCGGT ** 8626582 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCT-ACTCCACTACTGCTTAGG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCC-CTACTGCTTAGG * * * * 8626646 GAGATAAGATCTGTAATTTGGT 65 GGGTTAAGATCTGCAATTCGGT * * * * 8626668 CTGTTACCCAACTGCTTAGGGGTTTAAGGCCCATCG-CTTTTGATCTATTTCCCTACTGCTTAGG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTC-TTCGATCTGTTTCCCTACTGCTTAGG * * *** 8626732 GGGTTTAGATCTGTACATTCAAC 65 GGGTTAAGATCTGCA-ATTCGGT * * 8626755 CTGTTACCCTACTGTTTAGGGATTTAAGG 1 CTGTTACCCTACTGCTTAGGGGTTTAAGG 8626784 TCTGTAAATT Statistics Matches: 467, Mismatches: 65, Indels: 31 0.83 0.12 0.06 Matches are distributed among these distances: 85 39 0.08 86 224 0.48 87 204 0.44 ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36 Consensus pattern (86 bp): CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG GGTTAAGATCTGCAATTCGGT Found at i:8626397 original size:173 final size:172 Alignment explanation
Indices: 8626098--8626783 Score: 688 Period size: 173 Copynumber: 4.0 Consensus size: 172 8626088 AGATTCATAG * ** * * * * * 8626098 CTTCGATCTATTTTGCTACTGCTTAGGGTGATGAGATCTGCAAATCTTTAGCCTGTTACCCTACT 1 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG-AAA--TTTGGTCTGTTACCCTACT * * * * 8626163 GCTTAGGGGGTTAAGGCTCGTTAC-TTTTGATCTGTTTCCCTACTACTTAGGATGATAAGATCTG 63 GCTTAGGGGTTTAAGGC-CCTT-CGTTTTGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTG * * * * * 8626227 TAAATTTGACT-TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCAC 126 TAAATTCG-CTCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC * * * * 8626274 CTTCGATCTGTTTCCCTA-TCGTTTAGGGGGTTAAGATCTGCAATTTGGTCTGTTACCTTACTGT 1 CTTCGATCTGTTTCCCTACT-GCTTAGGGGGTTAAGATCTGAAATTTGGTCTGTTACCCTACTGC * * ** 8626338 TTAGGGGTTTAAGACCCTTCGTTTTCGATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTACAA 65 TTAGGGGTTTAAGGCCCTTCGTTTT-GATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAA * * 8626403 ATTCGGTCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGC 129 ATTCGCTCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC ** * 8626447 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGC 1 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG-AAATTTGGTCTGTTACCCTACTGC * * * * 8626512 TTAGGGGTTTAA-G-CCTGTCGCCTTCGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG- 65 TTAGGGGTTTAAGGCCCT-TCG-TTTTGATCTGTTTCC-CTACTGCTTAGGGTGATAAGATCTGT * * * * * 8626573 CAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGT 127 AAATTCGCTCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC ** * * * * 8626619 CTTCGATCT-ACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTGGTCTGTTACCCAACTGC 1 CTTCGATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGAAATTTGGTCTGTTACCCTACTGC * * * * * * 8626683 TTAGGGGTTTAAGGCCCATCGCTTTTGATCTATTTCCCTACTGCTTAGGGGGTTTAGATCTGTAC 65 TTAGGGGTTTAAGGCCCTTCG-TTTTGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAA * * * 8626748 ATTCAAC-CTGTTACCCTACTGTTTAGGGATTTAAGG 129 ATTC-GCTCTGTTACCCTACTGCTTAGGGGTTTAAGG 8626784 TCTGTAAATT Statistics Matches: 425, Mismatches: 70, Indels: 33 0.80 0.13 0.06 Matches are distributed among these distances: 171 35 0.08 172 121 0.28 173 202 0.48 174 33 0.08 175 3 0.01 176 31 0.07 ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36 Consensus pattern (172 bp): CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGAAATTTGGTCTGTTACCCTACTGCT TAGGGGTTTAAGGCCCTTCGTTTTGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAAT TCGCTCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC Found at i:8626424 original size:43 final size:42 Alignment explanation
Indices: 8626300--8626824 Score: 251 Period size: 43 Copynumber: 12.2 Consensus size: 42 8626290 TATCGTTTAG * * * 8626300 GGGGTTAAGATCTGC-AATTTGGTCTGTTACCTTACTGTTTA 1 GGGGTTAAGATCTGCGAATTCGGTCTGTTACCCTACTGCTTA * * ** * * 8626341 GGGGTTTAAGACCCTTCGTTTTCGATCTGTTTCCCTACTGCTTA 1 GGGG-TTAAGA-TCTGCGAATTCGGTCTGTTACCCTACTGCTTA * * 8626385 GGGTGTTAAGATCTACAAATTCGGTCTGTTACCCTACTGCTTA 1 GGG-GTTAAGATCTGCGAATTCGGTCTGTTACCCTACTGCTTA * ** * * 8626428 GGGGTTTAAGGTCCAT-CGCCTTCGATCTGTTTCCCTACTGCTTA 1 GGGG-TTAAGAT-C-TGCGAATTCGGTCTGTTACCCTACTGCTTA ** * * 8626472 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTA 1 -GGGGTTAAGATCTGCGAATTCGGTCTGTTACCCTACTGCTTA * ** * * 8626515 GGGGTTTAAG-CCTGTCGCCTTCGATCTGCT-CCACTACTGCTTA 1 GGGG-TTAAGATCTG-CGAATTCGGTCTGTTACC-CTACTGCTTA * * 8626558 GGGAGATAAGATCTGC-AATTTGGTCTGTTACCCTACTGCTTA 1 GGG-GTTAAGATCTGCGAATTCGGTCTGTTACCCTACTGCTTA ** * ** * ** 8626600 GGGGTTTAAGGCCCTTCGTCTTCGATCTACT-CCACTACTGCTTA 1 GGGG-TTAA-GATCTGCGAATTCGGTCTGTTACC-CTACTGCTTA * * * * 8626644 GGGAGATAAGATCTG-TAATTTGGTCTGTTACCCAACTGCTTA 1 GGG-GTTAAGATCTGCGAATTCGGTCTGTTACCCTACTGCTTA ** ** * * * * 8626686 GGGGTTTAAGGCCCAT-CGCTTTTGATCTATTTCCCTACTGCTTA 1 GGGG-TTAA-GATC-TGCGAATTCGGTCTGTTACCCTACTGCTTA * * *** * 8626730 GGGGGTTTAGATCTG-TACATTCAACCTGTTACCCTACTGTTTA 1 -GGGGTTAAGATCTGCGA-ATTCGGTCTGTTACCCTACTGCTTA * * ** * 8626773 GGGATTTAAGGTCTGTAAATTTGG-CTTGTTACCCTACTGCTTA 1 GGG-GTTAAGATCTGCGAATTCGGTC-TGTTACCCTACTGCTTA 8626816 GGGGGTTAA 1 -GGGGTTAA 8626825 AGCTCATCAT Statistics Matches: 352, Mismatches: 100, Indels: 62 0.68 0.19 0.12 Matches are distributed among these distances: 41 6 0.02 42 68 0.19 43 154 0.44 44 113 0.32 45 11 0.03 ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36 Consensus pattern (42 bp): GGGGTTAAGATCTGCGAATTCGGTCTGTTACCCTACTGCTTA Found at i:8626501 original size:130 final size:129 Alignment explanation
Indices: 8626367--8626914 Score: 431 Period size: 130 Copynumber: 4.2 Consensus size: 129 8626357 CGTTTTCGAT * 8626367 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTACAAATTCGGTCTGTTACCCTACTGCTTAGGGG 1 CTGTTACCCTACTGCTTAGGGTGTTAAGATCT-CAAATTCGGTCTGTTACCCTACTGCTTAGGGG * * 8626432 TTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC 65 TTTAAGGTCCATCGCCTTTGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC * * *** * * 8626497 CTGTTACCCTACTGCTTAGGG-GTTTAAGCCTGTCGCCTTCGATCTGCT-CCACTACTGCTTAGG 1 CTGTTACCCTACTGCTTAGGGTG-TTAAG-ATCTCAAATTCGGTCTGTTACC-CTACTGCTTAGG * * * * * * * ** 8626560 GAG-ATAAGAT-C-T-GCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGT-- 63 G-GTTTAAGGTCCATCGC-CTTTGATCTATTTCCCTACTGCTTAGGGGGTTAA-GATC-T-GTAA * * 8626619 CTTC-GAT 123 ATTCAG-C ** * * ** * * 8626626 CTACT-CCACTACTGCTTAGGGAGATAAGATCTGTAATTTGGTCTGTTACCCAACTGCTTAGGGG 1 CTGTTACC-CTACTGCTTAGGGTGTTAAGATCTCAAATTCGGTCTGTTACCCTACTGCTTAGGGG * * * * * 8626690 TTTAAGGCCCATCGCTTTTGATCTATTTCCCTACTGCTTAGGGGGTTTAGATCTGTACATTCAAC 65 TTTAAGGTCCATCGCCTTTGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC * * * * 8626755 CTGTTACCCTACTGTTTAGGGAT-TTAAGGTCTGTAAATTTGG-CTTGTTACCCTACTGCTTAGG 1 CTGTTACCCTACTGCTTAGGG-TGTTAAGATCT-CAAATTCGGTC-TGTTACCCTACTGCTTAGG * * ** 8626818 GGGTTAAAG-CTCATCATCTTTGATCTATTTCCCTACTGCTTAGGGTGG-TAAGATCTGTAGATA 63 GGTTTAAGGTC-CATCGCCTTTGATCTATTTCCCTACTGCTTAGGG-GGTTAAGATCTGTA-A-A * 8626881 TTTAGC 124 TTCAGC * * 8626887 CTGCTACCCTACTGCTTAGGGGGTTAAG 1 CTGTTACCCTACTGCTTAGGGTGTTAAG 8626915 GCTTGGTGGT Statistics Matches: 323, Mismatches: 67, Indels: 54 0.73 0.15 0.12 Matches are distributed among these distances: 127 5 0.02 128 60 0.19 129 61 0.19 130 159 0.49 131 9 0.03 132 29 0.09 ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35 Consensus pattern (129 bp): CTGTTACCCTACTGCTTAGGGTGTTAAGATCTCAAATTCGGTCTGTTACCCTACTGCTTAGGGGT TTAAGGTCCATCGCCTTTGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC Found at i:8627073 original size:88 final size:87 Alignment explanation
Indices: 8626971--8627134 Score: 220 Period size: 88 Copynumber: 1.9 Consensus size: 87 8626961 TTCGCCGTCT * * * 8626971 TTTGATCTGCTTCCCTACTACTTAGGGTGATAAGATCTATAAACTTCAGCTTGTTACCCTACTGC 1 TTTGATCTGCTTCCCTACTACTTAGGGGGATAAGATCTATAAA-TTCAGCCTGTAACCCTACTGC 8627036 TTAGAGGGTTAAAGCTCGTTGCC 65 TTAGAGGGTTAAAGCTCGTTGCC * * * * * * * 8627059 TTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTTAGCCTGTAACTCTACTGCT 1 TTTGATCTGCTTCCCTACTACTTAGGGGGATAAGATCTATAAATTCAGCCTGTAACCCTACTGCT * 8627124 TAGGGGGTTAA 66 TAGAGGGTTAA 8627135 GGCTTGTGAA Statistics Matches: 65, Mismatches: 11, Indels: 1 0.84 0.14 0.01 Matches are distributed among these distances: 87 28 0.43 88 37 0.57 ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37 Consensus pattern (87 bp): TTTGATCTGCTTCCCTACTACTTAGGGGGATAAGATCTATAAATTCAGCCTGTAACCCTACTGCT TAGAGGGTTAAAGCTCGTTGCC Found at i:8627310 original size:64 final size:64 Alignment explanation
Indices: 8627208--8627335 Score: 211 Period size: 64 Copynumber: 2.0 Consensus size: 64 8627198 TCATGTATCT ** 8627208 ATGCTTATGCCAAATAATTAGGATGCAATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG 1 ATGCTTATGCCAAATAATTAGGATGCAATGATCAAAATGAATCAAATGCTCCTAACTAAATGTG * * * 8627272 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG 1 ATGCTTATGCCAAATAATTAGGATGCAATGATCAAAATGAATCAAATGCTCCTAACTAAATGTG 8627336 TTATTATATG Statistics Matches: 59, Mismatches: 5, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 64 59 1.00 ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30 Consensus pattern (64 bp): ATGCTTATGCCAAATAATTAGGATGCAATGATCAAAATGAATCAAATGCTCCTAACTAAATGTG Found at i:8629149 original size:3 final size:3 Alignment explanation
Indices: 8629141--8629171 Score: 53 Period size: 3 Copynumber: 10.3 Consensus size: 3 8629131 CTTTCTATGA * 8629141 TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT T 1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T 8629172 TTTTATGATT Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 3 26 1.00 ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71 Consensus pattern (3 bp): TCT Found at i:8629163 original size:15 final size:15 Alignment explanation
Indices: 8629143--8629174 Score: 64 Period size: 15 Copynumber: 2.1 Consensus size: 15 8629133 TTCTATGATC 8629143 TTCTTCTTCTTCTTT 1 TTCTTCTTCTTCTTT 8629158 TTCTTCTTCTTCTTT 1 TTCTTCTTCTTCTTT 8629173 TT 1 TT 8629175 TATGATTTGA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 17 1.00 ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75 Consensus pattern (15 bp): TTCTTCTTCTTCTTT Found at i:8631861 original size:9 final size:10 Alignment explanation
Indices: 8631848--8631893 Score: 53 Period size: 9 Copynumber: 4.8 Consensus size: 10 8631838 GGGAAAGTCT 8631848 AATGCAAAT- 1 AATGCAAATG 8631857 AATGC-AATG 1 AATGCAAATG 8631866 CAATGCAAATG 1 -AATGCAAATG * 8631877 CATG-AAATG 1 AATGCAAATG 8631886 AATGCAAA 1 AATGCAAA 8631894 AGAAAGAAAG Statistics Matches: 31, Mismatches: 2, Indels: 7 0.77 0.05 0.17 Matches are distributed among these distances: 8 3 0.10 9 13 0.42 10 11 0.35 11 4 0.13 ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20 Consensus pattern (10 bp): AATGCAAATG Found at i:8631872 original size:19 final size:19 Alignment explanation
Indices: 8631848--8631893 Score: 58 Period size: 19 Copynumber: 2.4 Consensus size: 19 8631838 GGGAAAGTCT * 8631848 AATGCAAAT-AATGCAATG 1 AATGCAAATGAATGAAATG * 8631866 CAATGCAAATGCATGAAATG 1 -AATGCAAATGAATGAAATG 8631886 AATGCAAA 1 AATGCAAA 8631894 AGAAAGAAAG Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 19 17 0.71 20 7 0.29 ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20 Consensus pattern (19 bp): AATGCAAATGAATGAAATG Found at i:8634486 original size:3 final size:3 Alignment explanation
Indices: 8634467--8634730 Score: 191 Period size: 3 Copynumber: 86.3 Consensus size: 3 8634457 GGCAATAAAG * * * * 8634467 AAT AAT GAT AGT AAT AAT AAT AAT -AT AAT GAT AA- AA- AAC AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT * * * * * * 8634512 AA- AAGG AAC AAA AAT AAT AGT AAT AAT AA- AGAT ATTT AAT AAT AGT 1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT * * 8634558 AAT AAT AAC AAT AAT -AT AAAT AAT AAT ATAT ACAT AAA AAT AAT AAT 1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT A-AT A-AT AAT AAT AAT AAT * * * * ** * 8634605 AGTT AGA- AAT AAA AAT AAT GGAAGT AGT AAT AAC AAT GGT AAT AGT 1 A-AT A-AT AAT AAT AAT AAT --AA-T AAT AAT AAT AAT AAT AAT AAT 8634651 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT * 8634697 AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A 8634731 TATTTAATTC Statistics Matches: 208, Mismatches: 38, Indels: 30 0.75 0.14 0.11 Matches are distributed among these distances: 2 12 0.06 3 173 0.83 4 20 0.10 5 2 0.01 6 1 0.00 ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29 Consensus pattern (3 bp): AAT Found at i:8635526 original size:45 final size:45 Alignment explanation
Indices: 8635465--8635557 Score: 186 Period size: 45 Copynumber: 2.1 Consensus size: 45 8635455 ATCACCTTTG 8635465 TTTTCTAGATGTCTGATTCTTGGTATTTGTTTTCCAATTTAGTGT 1 TTTTCTAGATGTCTGATTCTTGGTATTTGTTTTCCAATTTAGTGT 8635510 TTTTCTAGATGTCTGATTCTTGGTATTTGTTTTCCAATTTAGTGT 1 TTTTCTAGATGTCTGATTCTTGGTATTTGTTTTCCAATTTAGTGT 8635555 TTT 1 TTT 8635558 CTCTTGATTG Statistics Matches: 48, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 45 48 1.00 ACGTcount: A:0.15, C:0.11, G:0.17, T:0.57 Consensus pattern (45 bp): TTTTCTAGATGTCTGATTCTTGGTATTTGTTTTCCAATTTAGTGT Found at i:8643093 original size:18 final size:17 Alignment explanation
Indices: 8643070--8643119 Score: 57 Period size: 18 Copynumber: 2.8 Consensus size: 17 8643060 AGGCAACCCA 8643070 ATTTTTATTTTTTATCTT 1 ATTTTTATTTTTTAT-TT * 8643088 ATTTTTATATTTT-TTT 1 ATTTTTATTTTTTATTT 8643104 ATTACTTTATTTTTTA 1 ATT--TTTATTTTTTA 8643120 CTATTTATTA Statistics Matches: 27, Mismatches: 2, Indels: 5 0.79 0.06 0.15 Matches are distributed among these distances: 16 5 0.19 17 1 0.04 18 21 0.78 ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76 Consensus pattern (17 bp): ATTTTTATTTTTTATTT Found at i:8643124 original size:18 final size:16 Alignment explanation
Indices: 8643070--8643125 Score: 51 Period size: 18 Copynumber: 3.2 Consensus size: 16 8643060 AGGCAACCCA 8643070 ATTTTTATTTTTTATCTT 1 ATTTTTATTTTTTA-C-T * 8643088 ATTTTTATATTTTT-TT 1 ATTTTTAT-TTTTTACT 8643104 ATTACTTTATTTTTTACT 1 ATT--TTTATTTTTTACT 8643122 ATTT 1 ATTT 8643126 ATTACTTTAT Statistics Matches: 32, Mismatches: 2, Indels: 10 0.73 0.05 0.23 Matches are distributed among these distances: 16 5 0.16 17 5 0.16 18 17 0.53 19 5 0.16 ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75 Consensus pattern (16 bp): ATTTTTATTTTTTACT Found at i:8643136 original size:12 final size:12 Alignment explanation
Indices: 8643101--8643137 Score: 51 Period size: 12 Copynumber: 3.2 Consensus size: 12 8643091 TTTATATTTT 8643101 TTTATTACTTTA 1 TTTATTACTTTA * 8643113 TTTTTTAC--TA 1 TTTATTACTTTA 8643123 TTTATTACTTTA 1 TTTATTACTTTA 8643135 TTT 1 TTT 8643138 TCTTTGGATA Statistics Matches: 21, Mismatches: 2, Indels: 4 0.78 0.07 0.15 Matches are distributed among these distances: 10 9 0.43 12 12 0.57 ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70 Consensus pattern (12 bp): TTTATTACTTTA Found at i:8645120 original size:10 final size:10 Alignment explanation
Indices: 8645105--8645154 Score: 75 Period size: 10 Copynumber: 5.0 Consensus size: 10 8645095 TAATTTTAAA 8645105 ATTTATCTTT 1 ATTTATCTTT 8645115 ATTTATCTTT 1 ATTTATCTTT * 8645125 AATTATCTTT 1 ATTTATCTTT 8645135 ATTTAT-TTGT 1 ATTTATCTT-T 8645145 ATTTATCTTT 1 ATTTATCTTT 8645155 TATAATTTAA Statistics Matches: 36, Mismatches: 2, Indels: 4 0.86 0.05 0.10 Matches are distributed among these distances: 9 2 0.06 10 32 0.89 11 2 0.06 ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68 Consensus pattern (10 bp): ATTTATCTTT Found at i:8650093 original size:41 final size:41 Alignment explanation
Indices: 8650030--8650163 Score: 132 Period size: 41 Copynumber: 3.3 Consensus size: 41 8650020 CATTTGCATT * * 8650030 AAAACGCCAC-AAAAAGCTGAGCAATAGCGACGTTTTTTATC 1 AAAACGCCGCTAAAAA-CTGAGCAATAGCGACGTTTTTAATC * * * * 8650071 CAAACGCCGCTAAAAA-TAGAGCAATAGTGGCGTTTTTAATT 1 AAAACGCCGCTAAAAACT-GAGCAATAGCGACGTTTTTAATC * * * 8650112 AAAACGCCGCTAAAAACTGAACAATAGCGGCGCTTTTGAA-- 1 AAAACGCCGCTAAAAACTGAGCAATAGCGACG-TTTTTAATC 8650152 AAAACGCCGCTA 1 AAAACGCCGCTA 8650164 TAGATCGAGC Statistics Matches: 79, Mismatches: 10, Indels: 9 0.81 0.10 0.09 Matches are distributed among these distances: 40 13 0.16 41 54 0.68 42 12 0.15 ACGTcount: A:0.39, C:0.22, G:0.19, T:0.21 Consensus pattern (41 bp): AAAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTAATC Found at i:8650197 original size:41 final size:41 Alignment explanation
Indices: 8650136--8650323 Score: 218 Period size: 40 Copynumber: 4.6 Consensus size: 41 8650126 AACTGAACAA * 8650136 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTT 1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTT * * * * * 8650177 TAGCAGCGCTTTTTAGAAAACGCCGCTATTGCTC-AGTTTT 1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTT * * * 8650217 TAGCAGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT 1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTT * * * * * 8650258 TAGCGGCGCTTTTGAAAAAACGCCGCTATTGCT-TAGTTTT 1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTT * * 8650298 TAGCGGCGCTTTTGGAAAAACGCCGC 1 TAGCAGCGCTTTTGAAAAAACGCCGC 8650324 GATTGCTCAA Statistics Matches: 125, Mismatches: 21, Indels: 3 0.84 0.14 0.02 Matches are distributed among these distances: 40 63 0.50 41 62 0.50 ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29 Consensus pattern (41 bp): TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTT Found at i:8650200 original size:81 final size:82 Alignment explanation
Indices: 8650112--8650285 Score: 199 Period size: 81 Copynumber: 2.1 Consensus size: 82 8650102 GTTTTTAATT * * * 8650112 AAAACGCCGCTAAAAACTGA-ACAATAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTT 1 AAAACGCCGCTAAAAACTCAGACAATAGCAGCGCTTTTGAAAAAACGCCACTATAGATCGAGCTT * * 8650176 TTAGCAGCGCTTTTTAG 66 TTAGCAGCGCTTTTGAA *** **** * * 8650193 AAAACGCCGCT-ATTGCTCAGTTTTTAGCAGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTT 1 AAAACGCCGCTAAAAACTCAGACAATAGCAGCGCTTTTGAAAAAACGCCACTATAGATCGAGCTT * 8650257 TTAGCGGCGCTTTTGAA 66 TTAGCAGCGCTTTTGAA 8650274 AAAACGCCGCTA 1 AAAACGCCGCTA 8650286 TTGCTTAGTT Statistics Matches: 76, Mismatches: 15, Indels: 3 0.81 0.16 0.03 Matches are distributed among these distances: 80 4 0.05 81 72 0.95 ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25 Consensus pattern (82 bp): AAAACGCCGCTAAAAACTCAGACAATAGCAGCGCTTTTGAAAAAACGCCACTATAGATCGAGCTT TTAGCAGCGCTTTTGAA Found at i:8650286 original size:81 final size:81 Alignment explanation
Indices: 8650136--8650321 Score: 300 Period size: 81 Copynumber: 2.3 Consensus size: 81 8650126 AACTGAACAA * * * * 8650136 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGCTTTTAGCAGCGCTTTTTAGAAAACGCC 1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGCTTTTAGCAGCGCTTTTGAAAAAACGCC 8650201 GCTATTGCTCAGTTTT 66 GCTATTGCTCAGTTTT * * * 8650217 TAGCAGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTTTAGCGGCGCTTTTGAAAAAACGCC 1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGCTTTTAGCAGCGCTTTTGAAAAAACGCC * 8650282 GCTATTGCTTAGTTTT 66 GCTATTGCTCAGTTTT 8650298 TAGCGGCGCTTTTGGAAAAACGCC 1 TAGCGGCGCTTTTGGAAAAACGCC 8650322 GCGATTGCTC Statistics Matches: 96, Mismatches: 9, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 81 96 1.00 ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30 Consensus pattern (81 bp): TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGCTTTTAGCAGCGCTTTTGAAAAAACGCC GCTATTGCTCAGTTTT Found at i:8650518 original size:2 final size:2 Alignment explanation
Indices: 8650511--8650542 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 8650501 ATTATTTTAA 8650511 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 8650543 CAAAATGGGT Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:8650792 original size:21 final size:21 Alignment explanation
Indices: 8650746--8650839 Score: 55 Period size: 22 Copynumber: 4.4 Consensus size: 21 8650736 TTAATTATCA * * 8650746 TTATAGTTTAGGGTTTATGGT 1 TTATGGTTAAGGGTTTATGGT * 8650767 ATATGGTTAAGGGTTTAAT-GT 1 TTATGGTTAAGGGTTT-ATGGT **** * 8650788 TTATGAGTTACTATTTTAAGGT 1 TTATG-GTTAAGGGTTTATGGT * * * 8650810 TTATGGATTATGGTTTTATGGA 1 TTATGG-TTAAGGGTTTATGGT 8650832 TTATGGTT 1 TTATGGTT 8650840 TATGGGTTAA Statistics Matches: 55, Mismatches: 14, Indels: 8 0.71 0.18 0.10 Matches are distributed among these distances: 21 23 0.42 22 32 0.58 ACGTcount: A:0.23, C:0.01, G:0.26, T:0.50 Consensus pattern (21 bp): TTATGGTTAAGGGTTTATGGT Found at i:8650826 original size:22 final size:22 Alignment explanation
Indices: 8650801--8650844 Score: 61 Period size: 22 Copynumber: 2.0 Consensus size: 22 8650791 TGAGTTACTA * 8650801 TTTTAAGGTTTATGGATTATGG 1 TTTTAAGGATTATGGATTATGG * * 8650823 TTTTATGGATTATGGTTTATGG 1 TTTTAAGGATTATGGATTATGG 8650845 GTTAAGGGTT Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 22 19 1.00 ACGTcount: A:0.20, C:0.00, G:0.27, T:0.52 Consensus pattern (22 bp): TTTTAAGGATTATGGATTATGG Found at i:8650829 original size:15 final size:14 Alignment explanation
Indices: 8650807--8650844 Score: 67 Period size: 15 Copynumber: 2.6 Consensus size: 14 8650797 ACTATTTTAA 8650807 GGTTTATGGATTAT 1 GGTTTATGGATTAT 8650821 GGTTTTATGGATTAT 1 GG-TTTATGGATTAT 8650836 GGTTTATGG 1 GGTTTATGG 8650845 GTTAAGGGTT Statistics Matches: 23, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 14 9 0.39 15 14 0.61 ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50 Consensus pattern (14 bp): GGTTTATGGATTAT Found at i:8650853 original size:7 final size:7 Alignment explanation
Indices: 8650843--8650926 Score: 80 Period size: 7 Copynumber: 11.7 Consensus size: 7 8650833 TATGGTTTAT 8650843 GGGTTAA 1 GGGTTAA 8650850 GGGTTAA 1 GGGTTAA * 8650857 GGTTTAA 1 GGGTTAA ** 8650864 GTTTTAGA 1 GGGTTA-A * 8650872 GGGGTT-G 1 -GGGTTAA 8650879 GGGTTTAA 1 GGG-TTAA * * 8650887 GGTTTAT 1 GGGTTAA 8650894 GGGTTAA 1 GGGTTAA 8650901 GGGTTAA 1 GGGTTAA 8650908 GGGTTAA 1 GGGTTAA 8650915 GGGTTAA 1 GGGTTAA 8650922 GGGTT 1 GGGTT 8650927 TATGTTTTAT Statistics Matches: 63, Mismatches: 10, Indels: 8 0.78 0.12 0.10 Matches are distributed among these distances: 6 3 0.05 7 54 0.86 8 3 0.05 9 3 0.05 ACGTcount: A:0.23, C:0.00, G:0.42, T:0.36 Consensus pattern (7 bp): GGGTTAA Found at i:8650949 original size:7 final size:7 Alignment explanation
Indices: 8650802--8650949 Score: 62 Period size: 7 Copynumber: 20.6 Consensus size: 7 8650792 GAGTTACTAT 8650802 TTTAAGG 1 TTTAAGG * 8650809 TTTATGG 1 TTTAAGG * * 8650816 ATTATGG 1 TTTAAGG * 8650823 TTTTATGG 1 -TTTAAGG * * 8650831 ATTATGG 1 TTTAAGG * 8650838 TTTATGG 1 TTTAAGG * 8650845 GTTAAGG 1 TTTAAGG * 8650852 GTTAAGG 1 TTTAAGG * 8650859 TTTAAGT 1 TTTAAGG 8650866 TTTAGAGGG 1 TTTA-A-GG * ** 8650875 GTTGGGG 1 TTTAAGG 8650882 TTTAAGG 1 TTTAAGG * 8650889 TTTATGG 1 TTTAAGG * 8650896 GTTAAGG 1 TTTAAGG * 8650903 GTTAAGG 1 TTTAAGG * 8650910 GTTAAGG 1 TTTAAGG * 8650917 GTTAAGGG 1 TTTAA-GG * * 8650925 TTTATGT 1 TTTAAGG * * 8650932 TTTATGA 1 TTTAAGG 8650939 TTTAAGG 1 TTTAAGG 8650946 TTTA 1 TTTA 8650950 TGGGTCAGAG Statistics Matches: 112, Mismatches: 25, Indels: 8 0.77 0.17 0.06 Matches are distributed among these distances: 7 97 0.87 8 12 0.11 9 3 0.03 ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44 Consensus pattern (7 bp): TTTAAGG Found at i:8656719 original size:42 final size:42 Alignment explanation
Indices: 8656667--8656802 Score: 184 Period size: 42 Copynumber: 3.2 Consensus size: 42 8656657 GTTTATGATT * * * 8656667 TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCGTGAT- 1 TTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCATGGTC * 8656709 TTTAGCGGCGTTTGCAGGAAAAGCGCCGCTAAAGGTCATGGTC 1 TTTAGCGGCGTTTG-TGGAAAAGCGCCGCTAAAGGTCATGGTC ** * 8656752 TTTAGCGGCGTTTGTAAAAAAGCGCCGCTAAAAGTCATGGTC 1 TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCATGGTC 8656794 TTTAGCGGC 1 TTTAGCGGC 8656803 TTTTTTAAAT Statistics Matches: 84, Mismatches: 8, Indels: 4 0.88 0.08 0.04 Matches are distributed among these distances: 42 70 0.83 43 14 0.17 ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26 Consensus pattern (42 bp): TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCATGGTC Found at i:8658456 original size:46 final size:46 Alignment explanation
Indices: 8658406--8658581 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 8658396 TATTTGGGCA 8658406 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * * * 8658452 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG * 8658499 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * 8658545 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 8658582 GCGGGTTACA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 4 0.04 45 2 0.02 46 67 0.60 47 33 0.29 48 2 0.02 50 4 0.04 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG Found at i:8658561 original size:93 final size:93 Alignment explanation
Indices: 8658402--8658573 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 8658392 TGGATATTTG * * 8658402 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 8658467 TTGAGTCCGAGTTCGTGAGATGTAACTA 66 TTGAGTCCGAGTTCGTGAGATGTAACTA * 8658495 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 8658560 TTGAGTCCGAGTTC 66 TTGAGTCCGAGTTC 8658574 ACTTATGGGC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTA Found at i:8661573 original size:15 final size:15 Alignment explanation
Indices: 8661534--8661612 Score: 83 Period size: 15 Copynumber: 5.4 Consensus size: 15 8661524 GTATCTTGGG * 8661534 TTTCTTTATCCTGGA 1 TTTCTTTATTCTGGA * 8661549 TCTCTTTATTCTGGA 1 TTTCTTTATTCTGGA * 8661564 TTTCTTTATTC-GGG 1 TTTCTTTATTCTGGA * 8661578 TTTCTCTA-TCTTGGA 1 TTTCTTTATTC-TGGA * 8661593 TTTCTTTATTC-GGT 1 TTTCTTTATTCTGGA 8661607 TTTCTT 1 TTTCTT 8661613 GTTATCTTTG Statistics Matches: 53, Mismatches: 8, Indels: 7 0.78 0.12 0.10 Matches are distributed among these distances: 13 2 0.04 14 17 0.32 15 32 0.60 16 2 0.04 ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58 Consensus pattern (15 bp): TTTCTTTATTCTGGA Found at i:8661597 original size:29 final size:29 Alignment explanation
Indices: 8661525--8661611 Score: 95 Period size: 29 Copynumber: 3.0 Consensus size: 29 8661515 CATAGTATCG * * * * 8661525 TATCTTGGGTTTCTTTATCCTGGATCTCTT 1 TATCTTGGATTTCTTTATTC-GGATTTCTC * 8661555 TAT-TCTGGATTTCTTTATTCGGGTTTCTC 1 TATCT-TGGATTTCTTTATTCGGATTTCTC * 8661584 TATCTTGGATTTCTTTATTCGGTTTTCT 1 TATCTTGGATTTCTTTATTCGGATTTCT 8661612 TGTTATCTTT Statistics Matches: 49, Mismatches: 6, Indels: 5 0.82 0.10 0.08 Matches are distributed among these distances: 29 32 0.65 30 17 0.35 ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56 Consensus pattern (29 bp): TATCTTGGATTTCTTTATTCGGATTTCTC Found at i:8664043 original size:46 final size:46 Alignment explanation
Indices: 8663993--8664168 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 8663983 TATTTGGGCA 8663993 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * * * 8664039 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG * 8664086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * 8664132 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 8664169 GCGGGTTACA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 4 0.04 45 2 0.02 46 67 0.60 47 33 0.29 48 2 0.02 50 4 0.04 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG Found at i:8664148 original size:93 final size:93 Alignment explanation
Indices: 8663989--8664160 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 8663979 TGGATATTTG * * 8663989 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 8664054 TTGAGTCCGAGTTCGTGAGATGTAACTA 66 TTGAGTCCGAGTTCGTGAGATGTAACTA * 8664082 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 8664147 TTGAGTCCGAGTTC 66 TTGAGTCCGAGTTC 8664161 ACTTATGGGC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTA Found at i:8666341 original size:39 final size:39 Alignment explanation
Indices: 8666295--8666379 Score: 100 Period size: 40 Copynumber: 2.2 Consensus size: 39 8666285 TGATAATTAT * * * 8666295 ATAATTTAGAATGCTCAGAAGC-CAAATTCACTAATTTGC 1 ATAATTTA-AAGGATCAGAAGCACAAATTCACCAATTTGC * * 8666334 ATAATTTAAAGGATTAGGAGCATCAAATTCACCAATTTGC 1 ATAATTTAAAGGATCAGAAGCA-CAAATTCACCAATTTGC 8666374 ATAATT 1 ATAATT 8666380 AATCATCCAA Statistics Matches: 39, Mismatches: 5, Indels: 3 0.83 0.11 0.06 Matches are distributed among these distances: 38 9 0.23 39 8 0.21 40 22 0.56 ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32 Consensus pattern (39 bp): ATAATTTAAAGGATCAGAAGCACAAATTCACCAATTTGC Found at i:8667240 original size:43 final size:43 Alignment explanation
Indices: 8667193--8667308 Score: 108 Period size: 54 Copynumber: 2.5 Consensus size: 43 8667183 CCAGGACCTT 8667193 TAGCGGTGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTA 1 TAGCGGTGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTA 8667236 TAGCGGACCTTTAGTGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTA 1 TAGC-G-------GT---GTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTA * * 8667290 TAGCGGCG-CTTTTATAAAA 1 TAGCGGTGTTTTTTATAAAA 8667309 AATGCCGCTA Statistics Matches: 60, Mismatches: 2, Indels: 23 0.71 0.02 0.27 Matches are distributed among these distances: 42 10 0.17 43 5 0.08 44 1 0.02 46 1 0.02 51 2 0.03 53 1 0.02 54 40 0.67 ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35 Consensus pattern (43 bp): TAGCGGTGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTA Found at i:8667268 original size:54 final size:54 Alignment explanation
Indices: 8667186--8667295 Score: 202 Period size: 54 Copynumber: 2.0 Consensus size: 54 8667176 CCAAAGACCA * 8667186 GGACCTTTAGCGGTGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAGC 1 GGACCTTTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAGC * 8667240 GGACCTTTAGTGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAGC 1 GGACCTTTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAGC 8667294 GG 1 GG 8667296 CGCTTTTATA Statistics Matches: 54, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 54 54 1.00 ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35 Consensus pattern (54 bp): GGACCTTTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAGC Done.