Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 333 of 427
Found at i:97112664 original size:1 final size:1
Alignment explanation
Indices: 97112658--97112724 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
97112648 GGCCTCTCCA
* * * * * * * * *
97112658 TTTTTTTTTTCTTTTTTTTCTTTTTTTCTTTTTATTTATTTCTTTTCTTTTCTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
97112723 TT
1 TT
97112725 GAAATAGAAG
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:97112674 original size:9 final size:9
Alignment explanation
Indices: 97112660--97112724 Score: 69
Period size: 9 Copynumber: 6.9 Consensus size: 9
97112650 CCTCTCCATT
97112660 TTTTTTTTC
1 TTTTTTTTC
97112669 TTTTTTTTC
1 TTTTTTTTC
97112678 -TTTTTTTC
1 TTTTTTTTC
*
97112686 TTTTTATTTA
1 TTTTT-TTTC
*
97112696 TTTCTTTTCTT
1 TTT-TTTT-TC
97112707 TTCTTTTTTC
1 TT-TTTTTTC
97112717 TTTTTTTT
1 TTTTTTTT
97112725 GAAATAGAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
8 8 0.17
9 19 0.40
10 11 0.23
11 9 0.19
12 1 0.02
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:97112681 original size:14 final size:13
Alignment explanation
Indices: 97112658--97112724 Score: 66
Period size: 12 Copynumber: 5.2 Consensus size: 13
97112648 GGCCTCTCCA
*
97112658 TTTTTTT-TTTCT
1 TTTTTTTCTTTTT
97112670 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
* *
97112683 TTCTTTTTATTTAT
1 TT-TTTTTCTTTTT
*
97112697 TTCTTTTC-TTTT
1 TTTTTTTCTTTTT
*
97112709 CTTTTTTCTTTTT
1 TTTTTTTCTTTTT
97112722 TTT
1 TTT
97112725 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
12 16 0.37
13 16 0.37
14 11 0.26
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:97112700 original size:31 final size:29
Alignment explanation
Indices: 97112658--97112724 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 29
97112648 GGCCTCTCCA
97112658 TTTTTTTTTTCTTTT-TTTTCTTTTTTTCT
1 TTTTTTTTTTCTTTTCTTTTC-TTTTTTCT
97112687 TTTTATTTATTTCTTTTCTTTTCTTTTTTCT
1 TTTT-TTT-TTTCTTTTCTTTTCTTTTTTCT
97112718 TTTTTTT
1 TTTTTTT
97112725 GAAATAGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
29 4 0.11
30 6 0.17
31 20 0.57
32 5 0.14
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (29 bp):
TTTTTTTTTTCTTTTCTTTTCTTTTTTCT
Found at i:97118372 original size:22 final size:21
Alignment explanation
Indices: 97118342--97118407 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
97118332 TACAAATTAA
97118342 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
97118364 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
97118385 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
97118404 ATCT
1 ATCT
97118408 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:97118394 original size:19 final size:19
Alignment explanation
Indices: 97118359--97118420 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
97118349 AGATTACAAG
97118359 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
97118380 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97118399 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97118418 ATC
1 ATC
97118421 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:97118937 original size:62 final size:62
Alignment explanation
Indices: 97118829--97118947 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
97118819 TAAAATTGTA
* **
97118829 AACAGTAAGTCACACGGCCTGGACACATGCCCGTGTCAATGGCCTGTGTGAACTCTAAAAGC
1 AACAGTAAGTCACACGGCCTGGACACATGCCCATGTCAATAACCTGTGTGAACTCTAAAAGC
* ** *
97118891 AACAGTAAGTCACACGGCCTGGACACATGCTCATGTCCCTAACCTGTGTGATCTCTA
1 AACAGTAAGTCACACGGCCTGGACACATGCCCATGTCAATAACCTGTGTGAACTCTA
97118948 TCTTGTACTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (62 bp):
AACAGTAAGTCACACGGCCTGGACACATGCCCATGTCAATAACCTGTGTGAACTCTAAAAGC
Found at i:97120429 original size:11 final size:11
Alignment explanation
Indices: 97120413--97120437 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97120403 ATTGGTATGC
97120413 TTTAAATGTGT
1 TTTAAATGTGT
97120424 TTTAAATGTGT
1 TTTAAATGTGT
97120435 TTT
1 TTT
97120438 GGTCATGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTAAATGTGT
Found at i:97121369 original size:17 final size:17
Alignment explanation
Indices: 97121339--97121371 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
97121329 AAAAAAAGAC
97121339 GATAAAAGATAAGAAAG
1 GATAAAAGATAAGAAAG
97121356 GATAAGAAGA-AAGAAA
1 GATAA-AAGATAAGAAA
97121372 TTATCATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (17 bp):
GATAAAAGATAAGAAAG
Found at i:97125492 original size:28 final size:28
Alignment explanation
Indices: 97125452--97125508 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
97125442 AAACGTATAG
* *
97125452 AAATGGACTCCTTTGTGGTAATCTATGA
1 AAATGGACTCCTTTATGGCAATCTATGA
97125480 AAATGGA-TGCCTTTATGGCAATCTATGA
1 AAATGGACT-CCTTTATGGCAATCTATGA
97125508 A
1 A
97125509 TAGACGCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (28 bp):
AAATGGACTCCTTTATGGCAATCTATGA
Found at i:97125746 original size:53 final size:53
Alignment explanation
Indices: 97125652--97125759 Score: 128
Period size: 53 Copynumber: 2.0 Consensus size: 53
97125642 GAAAGAAAGA
** * * * * *
97125652 AATAGTAAGTATGGTGAACTCTGAAAGAATGATGCGAATGGCTAATTCTGAAG
1 AATAGTAAGTATGGAAAACCCTAAAAGAATGATGAGAATGGCAAACTCTGAAG
*
97125705 AATAGTAAGTATGGAAAACCCTAAAAGAATGAT-ATATATGGCAAACTCTGAAG
1 AATAGTAAGTATGGAAAACCCTAAAAGAATGATGAGA-ATGGCAAACTCTGAAG
97125758 AA
1 AA
97125760 ATGGTTACGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.02
53 45 0.98
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (53 bp):
AATAGTAAGTATGGAAAACCCTAAAAGAATGATGAGAATGGCAAACTCTGAAG
Found at i:97128859 original size:27 final size:27
Alignment explanation
Indices: 97128829--97129035 Score: 252
Period size: 27 Copynumber: 7.7 Consensus size: 27
97128819 TTTGGTTTAC
97128829 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * * *
97128856 AAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
97128883 AAAATCACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * **
97128910 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
97128937 AAAATTACCAAAATAACCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * * *
97128964 AAAATTACTAAAATACACTTTGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
97128991 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
97129018 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
97129036 ATATAGGGTA
Statistics
Matches: 148, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:97128893 original size:54 final size:54
Alignment explanation
Indices: 97128820--97129035 Score: 351
Period size: 54 Copynumber: 4.0 Consensus size: 54
97128810 TTAGAATACT
*
97128820 TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCC
1 TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
* * *
97128874 TTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
* * *
97128928 TTGGTTTACAAAATTACCAAAATAACCCTGGTTTGTAAAATTACTAAAATACAC
1 TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
* *
97128982 TTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
1 TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
97129036 ATATAGGGTA
Statistics
Matches: 147, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 147 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
Found at i:97128967 original size:81 final size:82
Alignment explanation
Indices: 97128823--97129032 Score: 280
Period size: 81 Copynumber: 2.6 Consensus size: 82
97128813 GAATACTTTG
* *
97128823 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAAT-ACCCTTGGTTTATAAAA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATAACCCTTGGTTTATAAAA
*
97128887 TCACCAAAATACCCCTA
66 TCACCAAAATACACCTA
* * * ** * *
97128904 GTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATAACCC-TGGTTTGTAAAA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATAACCCTTGGTTTATAAAA
* * * *
97128968 TTACTAAAATACACTTT
66 TCACCAAAATACACCTA
97128985 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATA
97129033 CCCATATAGG
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 104 0.96
82 4 0.04
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (82 bp):
GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATAACCCTTGGTTTATAAAA
TCACCAAAATACACCTA
Found at i:97129050 original size:27 final size:27
Alignment explanation
Indices: 97128993--97129615 Score: 720
Period size: 27 Copynumber: 23.3 Consensus size: 27
97128983 TTGTTTATAA
* ** *
97128993 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** * *
97129020 AATTACTAAAATACCCATATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
97129047 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
97129074 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
97129101 AATTACTAAAATACACCCTGTAGGGTAG
1 AATTACCGAAATAC-CCCTGTAGGGTAG
*
97129129 AATTACCGAAATA-CCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97129155 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
97129182 AATTACCGAAATA-CCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
97129208 AAATATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
97129235 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
97129262 AATTACCGAAATTCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
97129289 AATTACCGAAATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
97129315 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97129342 AAATACCGAAATA-CCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
97129368 AAATATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97129395 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
97129422 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97129449 AATTACCAAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
97129476 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97129503 AATTATCGTAATACCCCTGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
97129529 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
97129556 AATTACTAAAATACCCCTGTATGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
97129583 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
97129609 AATTACC
1 AATTACC
97129616 ATTTTACCCC
Statistics
Matches: 516, Mismatches: 73, Indels: 15
0.85 0.12 0.02
Matches are distributed among these distances:
26 130 0.25
27 363 0.70
28 23 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:97129051 original size:54 final size:51
Alignment explanation
Indices: 97128829--97129062 Score: 261
Period size: 54 Copynumber: 4.4 Consensus size: 51
97128819 TTTGGTTTAC
*
97128829 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGG---AT
* * *
97128883 AAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGG---AT
* * * *
97128937 AAAATTACCAAAATAACCCTGGTTTGTAAAATTACTAAAATACACTTTGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATAC-CCTTG--GAT
*
97128991 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCATATAGGGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC-T-T-GGAT
* *
97129045 AGAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
97129063 TTGTAGGGTA
Statistics
Matches: 156, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 149 0.96
55 5 0.03
56 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (51 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGAT
Found at i:97129272 original size:107 final size:108
Alignment explanation
Indices: 97128993--97129615 Score: 720
Period size: 107 Copynumber: 5.8 Consensus size: 108
97128983 TTGTTTATAA
* ** * ** * *
97128993 AATTACCAAAATACCCCTAGT-TTGTAAAATTACTAAAATACCCATATAGGGTAGAATTACCGAA
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
* * * *
97129057 ATACCCTTGTAGGGTAGAAATACTGAAATACCCCTATAGGGTAG
65 ATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
** * * *
97129101 AATTACTAAAATACACCCTGTAGGGTAGAATTACCGAAATA-CCTTGTAGGGTAGAAATATCGAA
1 AATTACCGAAATAC-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
*
97129165 ATACCCCTGTAGGGTAGAATTACCGAAATA-CCTTGTAGGGTAG
65 ATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* ** * *
97129208 AAATATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * * *
97129273 TTCCCCTGTAGGGTAGAATTACCGAAATA-CCTTGTGGGGTAA
66 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
97129315 AAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATA-CCTTGTAGGGTAGAAATATCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * * *
97129379 TACCCTTATAGGGTAGAAATATCGAAATACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
97129422 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCCGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
97129487 TACCCCTGTAGGGTAAAATTATCGTAATACCCCTGTAGGGT-G
66 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * ** * * *
97129529 AATTATCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTATGGTGGAATTACCGAGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
97129594 TA-CCTTGTGGGGTAAAATTACC
66 TACCCCTGTAGGGTAGAATTACC
97129616 ATTTTACCCC
Statistics
Matches: 448, Mismatches: 62, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
106 86 0.19
107 227 0.51
108 117 0.26
109 18 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (108 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:97129627 original size:80 final size:81
Alignment explanation
Indices: 97129028--97129613 Score: 561
Period size: 80 Copynumber: 7.3 Consensus size: 81
97129018 AAAATTACTA
* * * * * *
97129028 AAATACCCATATAGGGTAGAATTA-CCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCT
1 AAATACCCCTGTAGGGTAAAATTATCC-AAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
* **
97129092 ATAGGGTAGAATTACTA
65 GTAGGGTAGAATTACCG
* * * *
97129109 AAATACACCCTGTAGGGTAGAATTA-CCGAAATA-CCTTGTAGGGTAGAAATA-TCGAAATACCC
1 AAATAC-CCCTGTAGGGTAAAATTATCC-AAATACCCCTATAGGGTAGAATTACT-GAAATACCC
97129171 CTGTAGGGTAGAATTACCG
63 CTGTAGGGTAGAATTACCG
* ** * * * *
97129190 AAATA-CCTTGTAGGGTAGAAA-TATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT
1 AAATACCCCTGTAGGGTA-AAATTATCCAAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
97129253 GTAGGGTAGAATTACCG
65 GTAGGGTAGAATTACCG
* * * * * * * *
97129270 AAATTCCCCTGTAGGGTAGAATTA-CCGAAATA-CCTTGTGGGGTAAAAATACCGAAATACCCCT
1 AAATACCCCTGTAGGGTAAAATTATCC-AAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
*
97129333 GTAGGGTAGAAATACCG
65 GTAGGGTAGAATTACCG
* * * *
97129350 AAATA-CCTTGTAGGGTAGAAA-TATCGAAATACCCTTATAGGGTAGAAATA-TCGAAATACCCC
1 AAATACCCCTGTAGGGTA-AAATTATCCAAATACCCCTATAGGGTAGAATTACT-GAAATACCCC
97129412 TGTAGGGTAGAATTACCG
64 TGTAGGGTAGAATTACCG
* ** *
97129430 AAATACCCCTGTAGGGTAGAATTA-CCAAAATACCCCCGTAGGGTAGAATTACCGAAATACCCCT
1 AAATACCCCTGTAGGGTAAAATTATCC-AAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
* *
97129494 GTAGGGTAAAATTATCG
65 GTAGGGTAGAATTACCG
* * * *
97129511 TAATACCCCTGTAGGGT-GAATTATCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTG
1 AAATACCCCTGTAGGGTAAAATTATCCAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTG
* *
97129575 TATGGTGGAATTACCG
66 TAGGGTAGAATTACCG
* * *
97129591 AGATA-CCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAAAATTA
97129614 CCATTTTACC
Statistics
Matches: 434, Mismatches: 52, Indels: 39
0.83 0.10 0.07
Matches are distributed among these distances:
79 45 0.10
80 217 0.50
81 148 0.34
82 24 0.06
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAAAATTATCCAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTG
TAGGGTAGAATTACCG
Found at i:97130094 original size:22 final size:22
Alignment explanation
Indices: 97130042--97130106 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
97130032 TTAAACCCTT
* *
97130042 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
97130064 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* * *
97130086 GTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
97130107 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:97130295 original size:27 final size:27
Alignment explanation
Indices: 97130265--97130365 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
97130255 ATTCTGTTAA
*
97130265 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTTTGCCACAATATCTATTTCTG
* *
97130292 GTGGCTATGCCACAACTATCT-GTTCTG
1 GTGGCTTTGCCACAA-TATCTATTTCTG
* *
97130319 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTTTGCCACAATATCTATTTCTG
* *
97130346 GTGACTTTGTCACAATATCT
1 GTGGCTTTGCCACAATATCT
97130366 GATAACTGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.08
27 53 0.84
28 5 0.08
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTATTTCTG
Found at i:97130323 original size:54 final size:53
Alignment explanation
Indices: 97130265--97130366 Score: 141
Period size: 54 Copynumber: 1.9 Consensus size: 53
97130255 ATTCTGTTAA
* * * *
97130265 GTGGCTTTGCCACATTATCTATTTCTGGTGGCTATGCCACAACTATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAA-TATCTGTTCTG
* *
97130319 GTGGCTCTGCCACAATATCTATATCTGGTGACTTTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTG
97130367 ATAACTGAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 6 0.14
54 36 0.86
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:97130528 original size:6 final size:6
Alignment explanation
Indices: 97130491--97130589 Score: 112
Period size: 6 Copynumber: 16.3 Consensus size: 6
97130481 TTGCATTCAC
* * *
97130491 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
97130540 ATTATG ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
97130588 AT
1 AT
97130590 AATGTTTCAT
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
5 3 0.04
6 71 0.90
7 4 0.05
8 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97138882 original size:25 final size:26
Alignment explanation
Indices: 97138821--97138882 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
97138811 TTTTAAGCCA
97138821 ATATCATCAAAATTATAATTAATCTAG
1 ATAT-ATCAAAATTATAATTAATCTAG
* *
97138848 TTA-ATAAAAATTA-AATATAATC-AG
1 ATATATCAAAATTATAAT-TAATCTAG
97138872 ATATATCAAAA
1 ATATATCAAAA
97138883 AATTAACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
24 7 0.24
25 20 0.69
27 2 0.07
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (26 bp):
ATATATCAAAATTATAATTAATCTAG
Found at i:97140589 original size:27 final size:27
Alignment explanation
Indices: 97140561--97140678 Score: 112
Period size: 27 Copynumber: 4.4 Consensus size: 27
97140551 TAGTTTCTTG
*
97140561 GGACAATAAAAACGGAGTAGTCCGCTG
1 GGACAATAAAAACGGAGTAGTCCGCTA
* * * *
97140588 GGATAATAAACACGGGGTAGTCCACTA
1 GGACAATAAAAACGGAGTAGTCCGCTA
* *
97140615 GGACAATAAAAACAGGA-TAGTCTGCCA
1 GGACAATAAAAAC-GGAGTAGTCCGCTA
* * * **
97140642 GAACAATAAAAACGGGGTAGTTCATTA
1 GGACAATAAAAACGGAGTAGTCCGCTA
97140669 GGACAATAAA
1 GGACAATAAA
97140679 CACTAGGTAG
Statistics
Matches: 70, Mismatches: 19, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
26 2 0.03
27 66 0.94
28 2 0.03
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (27 bp):
GGACAATAAAAACGGAGTAGTCCGCTA
Found at i:97140619 original size:54 final size:54
Alignment explanation
Indices: 97140561--97140678 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 54
97140551 TAGTTTCTTG
** * * *
97140561 GGACAATAAAAAC-GGAGTAGTCCGCTGGGATAATAAACACGGGGTAGTCCACTA
1 GGACAATAAAAACAGGA-TAGTCCGCCAGAACAATAAAAACGGGGTAGTCCACTA
* * *
97140615 GGACAATAAAAACAGGATAGTCTGCCAGAACAATAAAAACGGGGTAGTTCATTA
1 GGACAATAAAAACAGGATAGTCCGCCAGAACAATAAAAACGGGGTAGTCCACTA
97140669 GGACAATAAA
1 GGACAATAAA
97140679 CACTAGGTAG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 52 0.95
55 3 0.05
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (54 bp):
GGACAATAAAAACAGGATAGTCCGCCAGAACAATAAAAACGGGGTAGTCCACTA
Found at i:97145911 original size:25 final size:24
Alignment explanation
Indices: 97145883--97145973 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 24
97145873 ATGCTCATTT
97145883 GAGCTGAAGATCAGTATGCTCTCAC
1 GAGCT-AAGATCAGTATGCTCTCAC
* * *
97145908 GAGCTATGAATCGGTATGCTCTTAC
1 GAGCTAAG-ATCAGTATGCTCTCAC
* * *
97145933 GAGCTATAAATTAGTATGCTCTGAC
1 GAGCTA-AGATCAGTATGCTCTCAC
*
97145958 GAGCTATAAATCAGTA
1 GAGCTA-AGATCAGTA
97145974 ACCCTAATGA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.04
25 53 0.96
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
GAGCTAAGATCAGTATGCTCTCAC
Found at i:97145922 original size:50 final size:50
Alignment explanation
Indices: 97145864--97145969 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 50
97145854 ATATAAGTTG
* *
97145864 TGAATCGGTATGCTCATT-TGAGCTGA-AGATCAGTATGCTCTCACGAGCTA
1 TGAATCGGTATGCTC-TTACGAGCT-ATAAATCAGTATGCTCTCACGAGCTA
* *
97145914 TGAATCGGTATGCTCTTACGAGCTATAAATTAGTATGCTCTGACGAGCTA
1 TGAATCGGTATGCTCTTACGAGCTATAAATCAGTATGCTCTCACGAGCTA
*
97145964 TAAATC
1 TGAATC
97145970 AGTAACCCTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 3 0.06
50 46 0.94
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (50 bp):
TGAATCGGTATGCTCTTACGAGCTATAAATCAGTATGCTCTCACGAGCTA
Found at i:97149442 original size:27 final size:27
Alignment explanation
Indices: 97149407--97149459 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
97149397 TTTGTAATAG
97149407 TTAGGCTAACTTAGGTGCATTTAAAGT
1 TTAGGCTAACTTAGGTGCATTTAAAGT
*
97149434 TTAGGCTAACTTGGGTGCATTTAAAG
1 TTAGGCTAACTTAGGTGCATTTAAAG
97149460 CTAAAAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (27 bp):
TTAGGCTAACTTAGGTGCATTTAAAGT
Found at i:97150471 original size:12 final size:11
Alignment explanation
Indices: 97150444--97150482 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
97150434 AATGAAACAA
*
97150444 TAAATAAGCTT
1 TAAATAAGTTT
*
97150455 TAAATAATTTAT
1 TAAATAAGTT-T
97150467 TAAATAAGTTT
1 TAAATAAGTTT
97150478 TAAAT
1 TAAAT
97150483 GAACATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.44
Consensus pattern (11 bp):
TAAATAAGTTT
Found at i:97152453 original size:62 final size:62
Alignment explanation
Indices: 97152380--97152876 Score: 568
Period size: 62 Copynumber: 8.1 Consensus size: 62
97152370 GTGTAGGGTT
* * * *
97152380 CACACGGCCAGGGACACGGGTGCGTGCCCAGGCCATGTAACTCACTATTTGTGCTTAAGAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* * * * * *
97152442 CACACGGCCAGGGACAGGGGTGTGCGCCCAAGCTATGTAACTCACTGTTTGTGCTTAAGAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* * * * * *
97152504 CACATGTCCAGGGATACGGGCGTGTGCCCAGGTCGTGTAACTCACTGTTTGTACTTAAAAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* * * * * ** *
97152566 CATACGGCCAAGGACATGAGCGTGAGCCCAGGCTGTATAACTCACTGTTTGTACTTAAGAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* * * * *
97152628 CACACGGCCAGGGACACGGGCATGTGGCCAGGCCTTGTAACTCACTGTTTGTGCTTAAGAGC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* * * *
97152690 CACACGGCCAGGGACACGGGCATGTACCCAGGCCTTGTAA---ACTGTTTGTACTTAATAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* *** * * * *
97152749 CATATAACCATGGACACGGACGTGTGCCTAGGCCGTGTAACTCACTGTTTGTACTTAAGAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
* * * *
97152811 CACACGGCTAGAGACACGGGCGTGTGTCCAGGCCATGTAACTCACTGTTTGTACTTAAAAAC
1 CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
97152873 CACA
1 CACA
97152877 ACGCCAAGGC
Statistics
Matches: 362, Mismatches: 70, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
59 46 0.13
62 316 0.87
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (62 bp):
CACACGGCCAGGGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTGTACTTAAGAAC
Found at i:97152829 original size:183 final size:184
Alignment explanation
Indices: 97152403--97152911 Score: 616
Period size: 183 Copynumber: 2.8 Consensus size: 184
97152393 ACACGGGTGC
* * *
97152403 GTGCCCAGGCCATGTAACTCACTATTTGTGCTTAAGAACCACACGGCCAGGGACA-GGG-GTGTG
1 GTGCCCAGGCCGTGTAACTCACTGTTTGTACTTAAGAACCACACGGCCAGGGACACGGGCGTGTG
* * * * * *
97152466 CGCCCAAG-CTATGTAACTCACTGTTTGTGCTTAAGAACCACATGTCCAGGGATACGGGCGTGTG
66 -G-CCAGGCCT-TGTAACTCACTGTTTGTGCTTAAGAACCACACGGCCAGGGACACGGGCATGTA
* ** *
97152530 CCCAGGTCGTGTAACTCACTGTTTGTACTTAAAAACCATACGGCCAAGGACATGAGCGT
128 CCCAGGCCGTGTAA--CACTGTTTGTACTTAAAAACCATACAACCAAGGACAGGAGCGT
* * * *
97152589 GAGCCCAGGCTGTATAACTCACTGTTTGTACTTAAGAACCACACGGCCAGGGACACGGGCATGTG
1 GTGCCCAGGCCGTGTAACTCACTGTTTGTACTTAAGAACCACACGGCCAGGGACACGGGCGTGTG
*
97152654 GCCAGGCCTTGTAACTCACTGTTTGTGCTTAAGAGCCACACGGCCAGGGACACGGGCATGTACCC
66 GCCAGGCCTTGTAACTCACTGTTTGTGCTTAAGAACCACACGGCCAGGGACACGGGCATGTACCC
* * * *
97152719 AGGCCTTGTAA-ACTGTTTGTACTTAATAACCATATAACCATGGACACGGA-CGT
131 AGGCCGTGTAACACTGTTTGTACTTAAAAACCATACAACCAAGGACA-GGAGCGT
* * *
97152772 GTGCCTAGGCCGTGTAACTCACTGTTTGTACTTAAGAACCACACGGCTAGAGACACGGGCGTGTG
1 GTGCCCAGGCCGTGTAACTCACTGTTTGTACTTAAGAACCACACGGCCAGGGACACGGGCGTGTG
* * * * * * *
97152837 TCCAGGCCATGTAACTCACTGTTTGTACTTAAAAACCACAAC-GCCAAGGCAGAGGGGCATGTAC
66 GCCAGGCCTTGTAACTCACTGTTTGTGCTTAAGAACCAC-ACGGCC-AGGGACACGGGCATGTAC
97152901 CCAGGCCGTGT
129 CCAGGCCGTGT
97152912 GGCATGGTGT
Statistics
Matches: 279, Mismatches: 38, Indels: 14
0.84 0.11 0.04
Matches are distributed among these distances:
183 128 0.46
184 29 0.10
186 112 0.40
187 6 0.02
188 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (184 bp):
GTGCCCAGGCCGTGTAACTCACTGTTTGTACTTAAGAACCACACGGCCAGGGACACGGGCGTGTG
GCCAGGCCTTGTAACTCACTGTTTGTGCTTAAGAACCACACGGCCAGGGACACGGGCATGTACCC
AGGCCGTGTAACACTGTTTGTACTTAAAAACCATACAACCAAGGACAGGAGCGT
Found at i:97154706 original size:15 final size:15
Alignment explanation
Indices: 97154686--97154716 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97154676 TTTTATAATA
97154686 TTAAAAATATATATT
1 TTAAAAATATATATT
97154701 TTAAAAATATATATT
1 TTAAAAATATATATT
97154716 T
1 T
97154717 AACATAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAAAAATATATATT
Found at i:97154710 original size:13 final size:15
Alignment explanation
Indices: 97154679--97154718 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
97154669 GATTTGATTT
*
97154679 TATA-ATATTAAAAA
1 TATATATATTTAAAA
97154693 TATATAT-TTTAAAA
1 TATATATATTTAAAA
97154707 -ATATATATTTAA
1 TATATATATTTAA
97154719 CATAATGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 15 0.65
15 2 0.09
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATATATTTAAAA
Found at i:97155016 original size:12 final size:13
Alignment explanation
Indices: 97154989--97155019 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97154979 AAGTTAATGT
97154989 ATTAAAAATAATA
1 ATTAAAAATAATA
97155002 ATTAAAAATAA-A
1 ATTAAAAATAATA
97155014 ATTAAA
1 ATTAAA
97155020 GCTTAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATTAAAAATAATA
Found at i:97156572 original size:12 final size:12
Alignment explanation
Indices: 97156555--97156585 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97156545 GAAGCAGGGG
97156555 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
97156567 AGAAAAAGGGAA
1 AGAAAAAGAGAA
97156579 AGAAAAA
1 AGAAAAA
97156586 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:97159674 original size:15 final size:16
Alignment explanation
Indices: 97159637--97159675 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
97159627 AGATTTTAAT
*
97159637 ATAATTTTATTATGAA
1 ATAATATTATTATGAA
97159653 ATAATATTATTAT-AA
1 ATAATATTATTATGAA
*
97159668 ATTATATT
1 ATAATATT
97159676 GAAAATGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
ATAATATTATTATGAA
Found at i:97160377 original size:12 final size:13
Alignment explanation
Indices: 97160359--97160391 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
97160349 AATTTAGTAC
97160359 TTAAATTTTA-AA
1 TTAAATTTTATAA
*
97160371 TTTAATTTTATAA
1 TTAAATTTTATAA
97160384 TTAAATTT
1 TTAAATTT
97160392 GACTTTAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTAAATTTTATAA
Found at i:97173473 original size:3 final size:3
Alignment explanation
Indices: 97173441--97173495 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
97173431 GTGCAATTTG
*
97173441 TAA TAA -AA TACA TAAA TAAA TAA TAC TAA TAA TAGA TAA -AA TAA TAA
1 TAA TAA TAA TA-A T-AA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
97173488 TAA TAA TA
1 TAA TAA TA
97173496 GTGAGAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 4 0.09
3 29 0.64
4 11 0.24
5 1 0.02
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:97173505 original size:24 final size:25
Alignment explanation
Indices: 97173441--97173495 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
97173431 GTGCAATTTG
*
97173441 TAATAA-AATACAT-AAATAAATAA
1 TAATAATAATAGATAAAATAAATAA
*
97173464 TACTAATAATAGATAAAAT-AATAA
1 TAATAATAATAGATAAAATAAATAA
97173488 TAATAATA
1 TAATAATA
97173496 GTGAGAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 5 0.19
24 18 0.67
25 4 0.15
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (25 bp):
TAATAATAATAGATAAAATAAATAA
Found at i:97174058 original size:24 final size:23
Alignment explanation
Indices: 97174022--97174067 Score: 58
Period size: 26 Copynumber: 1.9 Consensus size: 23
97174012 GCATAAATTA
97174022 AAAAAAACCATTTGCTTCTCTTTTAG
1 AAAAAAA-CATTT-CTT-TCTTTTAG
97174048 AAAAAAA-ATTTCTTTCTTTT
1 AAAAAAACATTTCTTTCTTTT
97174068 CATTTTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 4 0.20
26 7 0.35
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (23 bp):
AAAAAAACATTTCTTTCTTTTAG
Found at i:97174985 original size:44 final size:44
Alignment explanation
Indices: 97174904--97175039 Score: 111
Period size: 44 Copynumber: 3.1 Consensus size: 44
97174894 TTCGTTCTAA
* * *
97174904 TCCACTACAACTTCAGGGATATAGGAATTGTCACTTCAGTCTGC
1 TCCACTACAACTTCAGAGATATAAGAATTGTCACTTCAATCTGC
*
97174948 TCCACTACAACTTCAGAGAGT-TAAG-ATTAGT-AGCTTCAATTTGC
1 TCCACTACAACTTCAGAGA-TATAAGAATT-GTCA-CTTCAATCTGC
* * * * *
97174992 TCCACTGCAAGTTCAGGGAAATAAG-ATTCG-CATCTTCAATCTAC
1 TCCACTACAACTTCAGAGATATAAGAATT-GTCA-CTTCAATCTGC
97175036 TCCA
1 TCCA
97175040 TTGTAACTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.05
44 70 0.93
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (44 bp):
TCCACTACAACTTCAGAGATATAAGAATTGTCACTTCAATCTGC
Found at i:97175054 original size:44 final size:44
Alignment explanation
Indices: 97174981--97175202 Score: 165
Period size: 44 Copynumber: 4.9 Consensus size: 44
97174971 AGATTAGTAG
* * * * * *
97174981 CTTCAATTTGCTCCACTGCAAGTTCAGGGAAATAAGATTCGCAT
1 CTTCAATCTACTCCACTGTAACTTTAGGGAGATAAGATTCGCAT
* * * *
97175025 CTTCAATCTACTCCATTGTAACTTTAGGGAGATAAGATTTGTAA
1 CTTCAATCTACTCCACTGTAACTTTAGGGAGATAAGATTCGCAT
* * * * * *
97175069 CTTGTAGCATTAATCCATTCCACTGAAACTTTAAGGAAATAAGATTTGCAT
1 C-T-T--C---AATCTACTCCACTGTAACTTTAGGGAGATAAGATTCGCAT
* * ** *
97175120 CTTCAATCTGCTCCACTGTAACTTCAAAGAGATAAGATTCGTAT
1 CTTCAATCTACTCCACTGTAACTTTAGGGAGATAAGATTCGCAT
* * *
97175164 TTTCAATCTACTCCACTGCATCTTTAGGGAGATAAGATT
1 CTTCAATCTACTCCACTGTAACTTTAGGGAGATAAGATT
97175203 TGTAACTTGG
Statistics
Matches: 137, Mismatches: 34, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
44 98 0.72
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 33 0.24
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTAACTTTAGGGAGATAAGATTCGCAT
Found at i:97175155 original size:139 final size:139
Alignment explanation
Indices: 97174981--97175254 Score: 370
Period size: 139 Copynumber: 2.0 Consensus size: 139
97174971 AGATTAGTAG
* * ** * *
97174981 CTTCAATTTGCTCCACTGCAAGTTCAGGGAAATAAGATTCGCATCTTCAATCTACTCCATTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAAAGAAATAAGATTCGCATCTTCAATCTACTCCACTGCAA
* *
97175046 CTTTAGGGAGATAAGATTTGTAACTTGTAGCATTAATCCATTCCACTGA-AACTTTAAGGAAATA
66 CTTTAGGGAGATAAGATTTGTAACTTGGAGCATTAATACATTCCACT-ACAACTTTAAGGAAATA
97175110 AGATTTGCAT
130 AGATTTGCAT
* * * * *
97175120 CTTCAATCTGCTCCACTGTAACTTCAAAGAGATAAGATTCGTATTTTCAATCTACTCCACTGCAT
1 CTTCAATCTGCTCCACTGCAACTTCAAAGAAATAAGATTCGCATCTTCAATCTACTCCACTGCAA
* ** * *
97175185 CTTTAGGGAGATAAGATTTGTAACTTGGAGCTTTAATATGTTCTACTACAACTTTAAGGAGATAA
66 CTTTAGGGAGATAAGATTTGTAACTTGGAGCATTAATACATTCCACTACAACTTTAAGGAAATAA
97175250 GATTT
131 GATTT
97175255 ATGACTTTAA
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
138 1 0.01
139 115 0.99
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (139 bp):
CTTCAATCTGCTCCACTGCAACTTCAAAGAAATAAGATTCGCATCTTCAATCTACTCCACTGCAA
CTTTAGGGAGATAAGATTTGTAACTTGGAGCATTAATACATTCCACTACAACTTTAAGGAAATAA
GATTTGCAT
Found at i:97175268 original size:51 final size:51
Alignment explanation
Indices: 97175175--97175302 Score: 139
Period size: 51 Copynumber: 2.5 Consensus size: 51
97175165 TTCAATCTAC
* * * * *
97175175 TCCACTGCATCTTTAGGGAGATAAGATTTGTAACTTGGAGCTTTAATATGT
1 TCCACTACAACTTTAGGGAGATAAGATTTATAACTTGAAGCTTTAATATAT
* * * * * *
97175226 TCTACTACAACTTTAAGGAGATAAGATTTATGACTTTAAGCTTTAGTCTAT
1 TCCACTACAACTTTAGGGAGATAAGATTTATAACTTGAAGCTTTAATATAT
* *
97175277 TCCACTGCAACTTTAGGGTGATAAGA
1 TCCACTACAACTTTAGGGAGATAAGA
97175303 CTTGCTATGG
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (51 bp):
TCCACTACAACTTTAGGGAGATAAGATTTATAACTTGAAGCTTTAATATAT
Found at i:97175487 original size:44 final size:44
Alignment explanation
Indices: 97175330--97176348 Score: 318
Period size: 44 Copynumber: 22.5 Consensus size: 44
97175320 AATCTGACTT
* * * * *
97175330 ACTGCAACTTTAGAG-GTATAGGACTTGTCGCTTCAATCTACTCC
1 ACTGCAACTTTAGAGAG-ATAAGATTTGTAGCTTCAATATGCTCC
* * * *
97175374 ACTGCAACTTTAGGGAGATAAGATTAGTAGTTTTAATATGCTCC
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* * *
97175418 ACTGCAACTTCA-AGGAGATAAGATTTGTAGCTTCAATTTGCTCT
1 ACTGCAACTTTAGA-GAGATAAGATTTGTAGCTTCAATATGCTCC
* * * *
97175462 ATTACAACTTTAGAGAGATAAGATTTGCTATCTTCGAT-TGCTATCTTC
1 ACTGCAACTTTAGAGAGATAAGATTTG-TAGCTTCAATATGC--TC--C
* ** ** * ** *
97175510 GATCTACTCCACTACA-ACTTCAGGGAGATAAGATCTGTAACTTCAATATGCTCC
1 -A-CTGCAACTTTAGAGAGAT-A---AGAT----T-TGTAGCTTCAATATGCTCC
* * * *
97175564 ATTGCAACTTCAG-GAAGATAAGATTTGTAATTTGTAGCTTTAATATGTTCC
1 ACTGCAACTTTAGAG-AGAT-A-A---G--ATTTGTAGCTTCAATATGCTCC
* * * * * * * *
97175615 TCTGCAACTTCAGGGAAATAAGATTCGATATCTTCAGTCTGCTCC
1 ACTGCAACTTTAGAGAGATAAGATTTG-TAGCTTCAATATGCTCC
* * * * ** **
97175660 ACTGTAACTTTTGGGAGATAAGACTTGTAATTTCAACCTGCTCC
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* * * * * ** **
97175704 ACTGCAACTTTA-AGGAGGTAAGGTTTATAACTTTAAGCTGCTTT
1 ACTGCAACTTTAGA-GAGATAAGATTTGTAGCTTCAATATGCTCC
* ** * *
97175748 ACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAATTTGTTCC
1 ACTGCAACTTTAGAGAGATAAGATTTG-TAGCTTCAATATGCTCC
* * * * * * ** *
97175793 ATTGCAATTTTAGGGAGATAAGACTTATAACTTCAACCTACTCC
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* * * * * * *
97175837 ACTGCAACATCAG-GAAAATAAGATTCGCATCTTTAATATGCTCC
1 ACTGCAACTTTAGAG-AGATAAGATTTGTAGCTTCAATATGCTCC
* * *** * * * *
97175881 ATTGCAACTTCAGAGAGATAAGATTCACATCTTCAATCTACTCT
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* * * * ** *
97175925 ACTGTATCTTCAGAGAGATAAGATTTGTAACTTCAACCTACTCC
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* * * * *
97175969 ACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATATGCTCT
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* *
97176013 ACTGCAACTTTAGAGAGATAAGATTTGTTATCTTCAATCTGCTCC
1 ACTGCAACTTTAGAGAGATAAGATTTG-TAGCTTCAATATGCTCC
* * * * * *
97176058 ATTGCAACTTTAGGGAGATAAGACTTGTAACTTATAGCATTAATCCATTCC
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGC-T-T--CAAT-ATGC--TCC
* * * * * ** *
97176109 ATTGCAACTTTAGGGAAATAAGATTCGCATATTCAATCTGCTCC
1 ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
* * * * * ** *
97176153 ATTACAACTTCAGGGAGATAAGACTTT-TAACTTCAACCTACTCC
1 ACTGCAACTTTAGAGAGATAAGA-TTTGTAGCTTCAATATGCTCC
* * * * * *
97176197 ACTGCAACTTTA-AGGAGATAAGGTTTATAGCTTTAATCTACTCT
1 ACTGCAACTTTAGA-GAGATAAGATTTGTAGCTTCAATATGCTCC
** * * * *
97176241 ACTATAACTTCAGAGGGATAAGATTTGCTATCTTCAATCA-GCTCA
1 ACTGCAACTTTAGAGAGATAAGATTTG-TAGCTTCAAT-ATGCTCC
* * * *
97176286 ACTGCAACTTCA-AGGAGATAAGA-TTGTGGCTTTAATCTGCTCC
1 ACTGCAACTTTAGA-GAGATAAGATTTGTAGCTTCAATATGCTCC
* *
97176329 ACTACAACTTCAG-GAGATAA
1 ACTGCAACTTTAGAGAGATAA
97176349 TATTCACCAT
Statistics
Matches: 718, Mismatches: 206, Indels: 104
0.70 0.20 0.10
Matches are distributed among these distances:
42 7 0.01
43 26 0.04
44 418 0.58
45 144 0.20
46 6 0.01
47 3 0.00
48 3 0.00
49 7 0.01
50 10 0.01
51 60 0.08
52 6 0.01
53 8 0.01
54 2 0.00
56 4 0.01
57 9 0.01
58 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (44 bp):
ACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATATGCTCC
Found at i:97175504 original size:13 final size:13
Alignment explanation
Indices: 97175486--97175512 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97175476 GAGATAAGAT
97175486 TTGCTATCTTCGA
1 TTGCTATCTTCGA
97175499 TTGCTATCTTCGA
1 TTGCTATCTTCGA
97175512 T
1 T
97175513 CTACTCCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (13 bp):
TTGCTATCTTCGA
Found at i:97175770 original size:88 final size:89
Alignment explanation
Indices: 97175617--97176348 Score: 441
Period size: 88 Copynumber: 8.2 Consensus size: 89
97175607 TATGTTCCTC
* * * * * * * * ** *
97175617 TGCAACTTCAGGGAAATAAGATTCGATATCTTCAGTCTGCTCCACTGTAACTTTTGGGAGATAAG
1 TGCAACTTTAGGGAGATAAGATT-TATAACTTCAATCTACTCTACTGCAACTTCAGAGAGATAAG
* * *
97175682 ACTTGTAAT-TTCAACCTGCTCCAC
65 ATTTGTAATCTTCAATCTGCTCCAT
* * * * * * *
97175706 TGCAACTTTAAGGAGGTAAGGTTTATAACTTTAAGCTGCTTTACTGCAACTTCAGAGAGATAAGA
1 TGCAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGA
* * * *
97175771 TTTGTTATATTCAATTTGTTCCAT
66 TTTGTAATCTTCAATCTGCTCCAT
* * * * * *
97175795 TGCAATTTTAGGGAGATAAGACTTATAACTTCAACCTACTCCACTGCAACATCAG-GAAAATAAG
1 TGCAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCTACTGCAACTTCAGAG-AGATAAG
* * * *
97175859 ATTCG-CATCTTTAATATGCTCCAT
65 ATTTGTAATCTTCAATCTGCTCCAT
* * * * * * *
97175883 TGCAACTTCAGAGAGATAAGATTCACATCTTCAATCTACTCTACTGTATCTTCAGAGAGATAAGA
1 TGCAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGA
* * *
97175948 TTTGTAA-CTTCAACCTACTCCAC
66 TTTGTAATCTTCAATCTGCTCCAT
* * * * * *
97175971 TGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATATGCTCTACTGCAACTTTAGAGAGATAAGA
1 TGCAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGA
*
97176036 TTTGTTATCTTCAATCTGCTCCAT
66 TTTGTAATCTTCAATCTGCTCCAT
* * * * * *
97176060 TGCAACTTTAGGGAGATAAGACTTGTAACTTATAGCATT-AATCCATTCCATTGCAACTTTAGGG
1 TGCAACTTTAGGGAGATAAGA-TT-T-A--TA-A-C-TTCAATCTACTCTACTGCAACTTCAGAG
* * * *
97176124 AAATAAGATTCG-CATATTCAATCTGCTCCAT
58 AGATAAGATTTGTAATCTTCAATCTGCTCCAT
* * * * *
97176155 TACAACTTCAGGGAGATAAGACTTT-TAACTTCAACCTACTCCACTGCAACTTTA-AGGAGATAA
1 TGCAACTTTAGGGAGATAAGA-TTTATAACTTCAATCTACTCTACTGCAACTTCAGA-GAGATAA
* * * * * * *
97176218 GGTTTAT-AGCTTTAATCTACTCTAC
64 GATTTGTAATCTTCAATCTGCTCCAT
** * * * *
97176243 TATAACTTCAGAGG-GATAAGATTTGCTATCTTCAATC-AGCTCAACTGCAACTTCA-AGGAGAT
1 TGCAACTTTAG-GGAGATAAGATTT-ATAACTTCAATCTA-CTCTACTGCAACTTCAGA-GAGAT
** * *
97176305 AAGA-TTGT-GGCTTTAATCTGCTCCAC
62 AAGATTTGTAATCTTCAATCTGCTCCAT
* *
97176331 TACAACTTCA-GGAGATAA
1 TGCAACTTTAGGGAGATAA
97176349 TATTCACCAT
Statistics
Matches: 505, Mismatches: 117, Indels: 44
0.76 0.18 0.07
Matches are distributed among these distances:
86 2 0.00
87 10 0.02
88 260 0.51
89 154 0.30
90 4 0.01
91 1 0.00
92 1 0.00
94 3 0.01
95 39 0.08
96 29 0.06
97 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (89 bp):
TGCAACTTTAGGGAGATAAGATTTATAACTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGA
TTTGTAATCTTCAATCTGCTCCAT
Found at i:97175814 original size:133 final size:133
Alignment explanation
Indices: 97175601--97176090 Score: 531
Period size: 133 Copynumber: 3.7 Consensus size: 133
97175591 TAATTTGTAG
* * * * * *
97175601 CTTTAATATGTTCCT-CTGCAACTTCAGGGAAATAAGATTCGATATCTTCAGTCTGCTCCACTGT
1 CTTTAATATGCT-CTACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGC
* * *
97175665 AACTTTT-GGGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTTAAGGAGGTAAGGTT
65 AA-TTTTAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTT
97175729 TATAA
129 TATAA
** * * * * * *
97175734 CTTTAAGCTGCTTTACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAATTTGTTCCATTGCA
1 CTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCA
* * * * * *
97175799 ATTTTAGGGAGATAAGACTTATAACTTCAACCTACTCCACTGCAAC-ATCAGGAAAATAAGATTC
66 ATTTTAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGG-AGATAAGGTTT
** *
97175863 GCAT
130 ATAA
* * * * * * *
97175867 CTTTAATATGCTCCATTGCAACTTCAGAGAGATAAGA-TTCACATCTTCAATCTACTCTACTG-T
1 CTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCA
* * * *
97175930 ATCTTCAGAGAGATAAGATTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTT
66 AT-TTTAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTT
*
97175995 ATAG
130 ATAA
* * *
97175999 CTTTAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGTTATCTTCAATCTGCTCCATTGCA
1 CTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCA
*
97176064 ACTTTAGGGAGATAAGACTTGTAACTT
66 ATTTTAGGGAGATAAGACTTGTAACTT
97176091 ATAGCATTAA
Statistics
Matches: 282, Mismatches: 68, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
131 2 0.01
132 108 0.38
133 171 0.61
134 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (133 bp):
CTTTAATATGCTCTACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCA
ATTTTAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTA
TAA
Found at i:97175971 original size:265 final size:270
Alignment explanation
Indices: 97175601--97176206 Score: 744
Period size: 265 Copynumber: 2.3 Consensus size: 270
97175591 TAATTTGTAG
* * * * *
97175601 CTTTAATATGTTCC-TCTGCAACTTCAGGGAAATAAGATTCGATATCTTCAGTCTGCTCCACTGT
1 CTTTAATATGCTCCAT-TGCAACTTCAGGGAGATAAGATTCGACATCTTCAATCTACTCCACTGT
** * * * *
97175665 AACTTTTGGGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTTAAGGAGGTAAGGTTT
65 AACTTCAGAGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTT
* * * *
97175730 ATAACTTTAAGCTGCTTTACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAATTTGTTCCAT
130 ATAACTTTAAGATGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAATCTGCTCCAT
*
97175795 TGCAATTTTAGGGAGATAAGACTTATAAC-T-T-C-AA-CCTACTCCACTGCAACATCAGGAAAA
195 TGCAACTTTAGGGAGATAAGACTTATAACTTATACTAATCC-ACTCCACTGCAACATCAGGAAAA
97175855 TAAGATTCGCAT
259 TAAGATTCGCAT
* *
97175867 CTTTAATATGCTCCATTGCAACTTCAGAGAGATAAGATTC-ACATCTTCAATCTACTCTACTGTA
1 CTTTAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCGACATCTTCAATCTACTCCACTGTA
* * *
97175931 TCTTCAGAGAGATAAGATTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTTA
66 ACTTCAGAGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTA
* * * *
97175996 TAGCTTTAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGTTATCTTCAATCTGCTCCATT
131 TAACTTTAAGATGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAATCTGCTCCATT
* * * * * *
97176061 GCAACTTTAGGGAGATAAGACTTGTAACTTATAGCATTAATCCATTCCATTGCAACTTTAGGGAA
196 GCAACTTTAGGGAGATAAGACTTATAACTTATA-C--TAATCCACTCCACTGCAACATCAGGAAA
97176126 ATAAGATTCGCAT
258 ATAAGATTCGCAT
* * * * ** * *
97176139 ATTCAATCTGCTCCATTACAACTTCAGGGAGATAAGACTTTTA-A-CTTCAACCTACTCCACTGC
1 CTTTAATATGCTCCATTGCAACTTCAGGGAGATAAGA-TTCGACATCTTCAATCTACTCCACTGT
97176202 AACTT
65 AACTT
97176207 TAAGGAGATA
Statistics
Matches: 288, Mismatches: 41, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
265 159 0.55
266 36 0.12
267 2 0.01
269 1 0.00
272 84 0.29
273 5 0.02
274 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (270 bp):
CTTTAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCGACATCTTCAATCTACTCCACTGTA
ACTTCAGAGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTA
TAACTTTAAGATGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAATCTGCTCCATT
GCAACTTTAGGGAGATAAGACTTATAACTTATACTAATCCACTCCACTGCAACATCAGGAAAATA
AGATTCGCAT
Found at i:97176186 original size:228 final size:227
Alignment explanation
Indices: 97175878--97176312 Score: 620
Period size: 228 Copynumber: 1.9 Consensus size: 227
97175868 TTTAATATGC
* * * ** *
97175878 TCCATTGCAACTTCAGAGAGATAAGATTCACATCTTCAATCTACTCTACTGTATCTTCAGAGAGA
1 TCCATTGCAACTTCAGAGAAATAAGATTCACATATTCAATCTACTCCACTACAACTTCAGAGAGA
*
97175943 TAAGATTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATAT
66 TAAGATTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTATAGCTTTAATAT
* * * * * * * * *
97176008 GCTCTACTGCAACTTTAGAGAGATAAGATTTGTTATCTTCAATCTGCTCCATTGCAACTTTAGGG
131 ACTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCAGCTCAACTGCAACTTCAAGG
97176073 AGATAAGACTTGTAACTTATAGCATTAATCCAT
196 AGATAAGA-TTGTAACTTATAGCATTAATCCAT
* * * * * *
97176106 TCCATTGCAACTTTAGGGAAATAAGATTCGCATATTCAATCTGCTCCATTACAACTTCAGGGAGA
1 TCCATTGCAACTTCAGAGAAATAAGATTCACATATTCAATCTACTCCACTACAACTTCAGAGAGA
*
97176171 TAAGACTTT-TAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTATAGCTTTAATC
66 TAAGA-TTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTATAGCTTTAATA
* *
97176235 TACTCTACTATAACTTCAGAGGGATAAGATTTGCTATCTTCAATCAGCTCAACTGCAACTTCAAG
130 TACTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCAGCTCAACTGCAACTTCAAG
97176300 GAGATAAGATTGT
195 GAGATAAGATTGT
97176313 GGCTTTAATC
Statistics
Matches: 181, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
227 4 0.02
228 174 0.96
229 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (227 bp):
TCCATTGCAACTTCAGAGAAATAAGATTCACATATTCAATCTACTCCACTACAACTTCAGAGAGA
TAAGATTTGTAACTTCAACCTACTCCACTGCAACTTTAAGGAGATAAGGTTTATAGCTTTAATAT
ACTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCAGCTCAACTGCAACTTCAAGG
AGATAAGATTGTAACTTATAGCATTAATCCAT
Found at i:97179989 original size:17 final size:17
Alignment explanation
Indices: 97179956--97180000 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
97179946 ATTCATACAA
*
97179956 ATGATTTGTTTATAGTT
1 ATGATTTGTATATAGTT
97179973 ATGATTTGTGATA-AGTT
1 ATGATTTGT-ATATAGTT
97179990 -T-ATTTGTATAT
1 ATGATTTGTATAT
97180001 GGTTTACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 3 0.12
15 6 0.24
16 1 0.04
17 13 0.52
18 2 0.08
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.56
Consensus pattern (17 bp):
ATGATTTGTATATAGTT
Found at i:97181331 original size:65 final size:65
Alignment explanation
Indices: 97181209--97181331 Score: 149
Period size: 65 Copynumber: 1.9 Consensus size: 65
97181199 CTGACTTTTC
* * ** *
97181209 CCCACGACCAACAGACACGCCCGTGTGCTATGGCCATGTGATACTTAGCCAGCTACTGAATTAAG
1 CCCACGACCAACAAACACGCCCATGTGCTATGGCCATGTGATACTTAAACAGATACTGAATTAAG
* * * *
97181274 CCCACGACC-ACATAACACGCCTATGTGTTATGGCCGTGTGATACTTAAAGAGATACTG
1 CCCACGACCAACA-AACACGCCCATGTGCTATGGCCATGTGATACTTAAACAGATACTG
97181332 CTTTGCATAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
64 3 0.06
65 45 0.94
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (65 bp):
CCCACGACCAACAAACACGCCCATGTGCTATGGCCATGTGATACTTAAACAGATACTGAATTAAG
Found at i:97184622 original size:46 final size:46
Alignment explanation
Indices: 97184562--97184881 Score: 525
Period size: 46 Copynumber: 7.0 Consensus size: 46
97184552 TTTGACATGA
* * * * * *
97184562 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
97184608 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97184654 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
97184700 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97184746 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
97184792 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
97184838 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
97184882 AGAGCACACT
Statistics
Matches: 260, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 256 0.98
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:97187304 original size:30 final size:30
Alignment explanation
Indices: 97187237--97187304 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
97187227 CACCCTTAAA
* * *
97187237 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
97187267 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
97187296 AGTATTTAC
1 A-TATTTAC
97187305 TCTTGGGCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:97189865 original size:24 final size:24
Alignment explanation
Indices: 97189824--97189875 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
97189814 AAAGCAGAAA
97189824 TTTAAAAAAAAATCATTTGCTTCTCT
1 TTTAAAAAAAAA-CATTTGCTT-TCT
* *
97189850 TTTAGAAAAAAA-ATTTTCTTTCT
1 TTTAAAAAAAAACATTTGCTTTCT
97189873 TTT
1 TTT
97189876 CGTTTTCTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 7 0.29
26 11 0.46
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.48
Consensus pattern (24 bp):
TTTAAAAAAAAACATTTGCTTTCT
Found at i:97200105 original size:18 final size:19
Alignment explanation
Indices: 97200073--97200113 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
97200063 TAATCTCAGA
97200073 TTTGGAAGAAAAAAAGTTT
1 TTTGGAAGAAAAAAAGTTT
97200092 TTTGGAAGAAAAAAAGTTT
1 TTTGGAAGAAAAAAAGTTT
97200111 TTT
1 TTT
97200114 TCTCAAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (19 bp):
TTTGGAAGAAAAAAAGTTT
Found at i:97205474 original size:15 final size:16
Alignment explanation
Indices: 97205454--97205486 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
97205444 AAAGCAGGGG
97205454 AAGG-AAAGAAAGAAA
1 AAGGAAAAGAAAGAAA
97205469 AAGGAAAAGAAAGAAA
1 AAGGAAAAGAAAGAAA
97205485 AA
1 AA
97205487 AAAGGGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (16 bp):
AAGGAAAAGAAAGAAA
Found at i:97205482 original size:20 final size:20
Alignment explanation
Indices: 97205457--97205496 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
97205447 GCAGGGGAAG
97205457 GAAAGAAAGAAAAA-GGAAAA
1 GAAAGAAA-AAAAAGGGAAAA
97205477 GAAAGAAAAAAAAGGGAAAA
1 GAAAGAAAAAAAAGGGAAAA
97205497 TCAAAGGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (20 bp):
GAAAGAAAAAAAAGGGAAAA
Found at i:97207472 original size:46 final size:46
Alignment explanation
Indices: 97207420--97207601 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
97207410 AGTGTACTCT
* *
97207420 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
97207466 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97207512 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
97207558 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
97207602 TCATGTCAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97218552 original size:25 final size:26
Alignment explanation
Indices: 97218481--97218553 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
97218471 TAGCTCTTAC
*
97218481 GAGCATCCCGA-TATATGGCTCTTCGT
1 GAGCTTCCCGATTA-ATGGCTCTTCGT
* *
97218507 GAGCTTCCCGATTAAAGGCTCTTTGT
1 GAGCTTCCCGATTAATGGCTCTTCGT
*
97218533 GAGCTTCCTG-TTAATGGCTCT
1 GAGCTTCCCGATTAATGGCTCT
97218554 CCAGAGCTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 10 0.24
26 29 0.71
27 2 0.05
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
GAGCTTCCCGATTAATGGCTCTTCGT
Found at i:97218633 original size:24 final size:25
Alignment explanation
Indices: 97218481--97218649 Score: 89
Period size: 24 Copynumber: 6.8 Consensus size: 25
97218471 TAGCTCTTAC
* *
97218481 GAGCATCCCGATATATGGCTCTTCGT
1 GAGCTTCCCGATA-ATGGCTCTTCGA
* * *
97218507 GAGCTTCCCGATTAAAGGCTCTTTGT
1 GAGCTTCCCGA-TAATGGCTCTTCGA
* * *
97218533 GAGCTTCCTGTTAATGGCTC-TCCA
1 GAGCTTCCCGATAATGGCTCTTCGA
* * *
97218557 GAGCTTCTCGATATTAGCATGCTT-GA
1 GAGCTTCCCGATAATGGC-T-CTTCGA
* * * *
97218583 -ACCTTCCCGACATTGGCTCGT--A
1 GAGCTTCCCGATAATGGCTCTTCGA
*
97218605 TGAGCTTCCCGATAATGGCTC-TCCA
1 -GAGCTTCCCGATAATGGCTCTTCGA
*
97218630 GAGCTTCCCGTTACATGGCT
1 GAGCTTCCCGATA-ATGGCT
97218650 TACATGAGCT
Statistics
Matches: 110, Mismatches: 24, Indels: 19
0.72 0.16 0.12
Matches are distributed among these distances:
22 1 0.01
23 3 0.03
24 43 0.39
25 29 0.26
26 31 0.28
27 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGATAATGGCTCTTCGA
Found at i:97218658 original size:25 final size:25
Alignment explanation
Indices: 97218604--97218749 Score: 95
Period size: 25 Copynumber: 5.9 Consensus size: 25
97218594 ATTGGCTCGT
*
97218604 ATGAGCTTCCCGATA-ATGGCTCTCC
1 ATGAGCTTCCCGTTACATGGCT-TCC
*
97218629 A-GAGCTTCCCGTTACATGGCTTAC
1 ATGAGCTTCCCGTTACATGGCTTCC
** *
97218653 ATGAGCTTCTTGTTATATGGC-TCC
1 ATGAGCTTCCCGTTACATGGCTTCC
* *
97218677 AAAGAGCTTCGCGTTACATGGC-TCGC
1 -ATGAGCTTCCCGTTACATGGCTTC-C
* ***
97218703 ATAAGCTTCTTATTACATGGC-TCGC
1 ATGAGCTTCCCGTTACATGGCTTC-C
* * *
97218728 ATAAGCTTCCTGTTATATGGCT
1 ATGAGCTTCCCGTTACATGGCT
97218750 CGAAAGAGTT
Statistics
Matches: 98, Mismatches: 18, Indels: 9
0.78 0.14 0.07
Matches are distributed among these distances:
24 17 0.17
25 80 0.82
26 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACATGGCTTCC
Found at i:97218685 original size:50 final size:51
Alignment explanation
Indices: 97218629--97218750 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 51
97218619 ATGGCTCTCC
* * * *
97218629 AGAGCTTCCCGTTACATGGCTTACATGAGCTTCTTGTTATATGGCTC-CAA
1 AGAGCTTCCCGTTACATGGCTCACATAAGCTTCTTATTACATGGCTCGCAA
* * *
97218679 AGAGCTTCGCGTTACATGGCTCGCATAAGCTTCTTATTACATGGCTCGCAT
1 AGAGCTTCCCGTTACATGGCTCACATAAGCTTCTTATTACATGGCTCGCAA
* *
97218730 A-AGCTTCCTGTTATATGGCTC
1 AGAGCTTCCCGTTACATGGCTC
97218751 GAAAGAGTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 58 0.95
51 3 0.05
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (51 bp):
AGAGCTTCCCGTTACATGGCTCACATAAGCTTCTTATTACATGGCTCGCAA
Found at i:97218750 original size:25 final size:25
Alignment explanation
Indices: 97218631--97218751 Score: 120
Period size: 25 Copynumber: 4.8 Consensus size: 25
97218621 GGCTCTCCAG
* ** *
97218631 AGCTTCCCGTTACATGGCTTACATG
1 AGCTTCCTGTTACATGGCTCGCATA
* * *
97218656 AGCTTCTTGTTATATGGCTC-CAAA
1 AGCTTCCTGTTACATGGCTCGCATA
97218680 GAGCTTCGC-GTTACATGGCTCGCATA
1 -AGCTTC-CTGTTACATGGCTCGCATA
* *
97218706 AGCTTCTTATTACATGGCTCGCATA
1 AGCTTCCTGTTACATGGCTCGCATA
*
97218731 AGCTTCCTGTTATATGGCTCG
1 AGCTTCCTGTTACATGGCTCG
97218752 AAAGAGTTTC
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
24 2 0.03
25 73 0.94
26 3 0.04
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (25 bp):
AGCTTCCTGTTACATGGCTCGCATA
Found at i:97219831 original size:72 final size:72
Alignment explanation
Indices: 97219754--97219944 Score: 235
Period size: 72 Copynumber: 2.7 Consensus size: 72
97219744 AGCATGCTTA
* * *
97219754 AAATTA-TCCACACAGCCTAGCATACAGG-TGTGTGGCTTGGCCGTGTGACCCTGCACCTATTTT
1 AAATTACT-CACACAGCCTAGCATAC-GGACGTGTAGCTTGGCCGTGTGACCCTACACCTATTTT
97219817 ATGCAAATT
64 ATGCAAATT
* *
97219826 AAATTACTCACACGGCCTAGCATACGGACGTGTAGCTTGGCCGTGTGACCTTACACCTATTTTAT
1 AAATTACTCACACAGCCTAGCATACGGACGTGTAGCTTGGCCGTGTGACCCTACACCTATTTTAT
97219891 GCAAATT
66 GCAAATT
* * * * * *
97219898 AAATTACTCATATAGCCTAACACACGGGCGTGT-GACTTGACCGTGTG
1 AAATTACTCACACAGCCTAGCATACGGACGTGTAG-CTTGGCCGTGTG
97219945 TTTCAAGTCA
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
71 3 0.03
72 100 0.96
73 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (72 bp):
AAATTACTCACACAGCCTAGCATACGGACGTGTAGCTTGGCCGTGTGACCCTACACCTATTTTAT
GCAAATT
Found at i:97222511 original size:18 final size:18
Alignment explanation
Indices: 97222488--97222526 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
97222478 CTCTTCGGAG
97222488 ATGTTTTCTTATTTAGTT
1 ATGTTTTCTTATTTAGTT
97222506 ATGTTTTCTTATTTAGTT
1 ATGTTTTCTTATTTAGTT
97222524 ATG
1 ATG
97222527 AACTAAACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.18, C:0.05, G:0.13, T:0.64
Consensus pattern (18 bp):
ATGTTTTCTTATTTAGTT
Found at i:97232462 original size:88 final size:86
Alignment explanation
Indices: 97232343--97232514 Score: 218
Period size: 88 Copynumber: 2.0 Consensus size: 86
97232333 TTTCCTTTTA
* * * * *
97232343 TTTTTTTCACTCGATTGAGCACTTGAGCTTTCAAAATATATCAAAAAGGCCCTCAAACTTCTTCA
1 TTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAATTCTTC-
97232408 AAAAAAAGCAATTAAGCCCCTGC
65 -AAAAAAGCAATTAAGCCCCTGC
* * * * * *
97232431 TTTTTTTTACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAGAAGACCCTCAAAATTTTTCA
1 TTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAATTCTTCA
*
97232496 AAAAAGCAATTACGCCCCT
66 AAAAAGCAATTAAGCCCCT
97232515 TCTCTTATTA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
86 19 0.26
88 53 0.74
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (86 bp):
TTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGACCCTCAAAATTCTTCA
AAAAAGCAATTAAGCCCCTGC
Found at i:97232584 original size:18 final size:19
Alignment explanation
Indices: 97232553--97232600 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
97232543 TAACAAATAA
97232553 AAAATTTTAGAT-AAATTATT
1 AAAATTTTA-ATAAAATT-TT
97232573 -AAATTTTAATAAAATTTT
1 AAAATTTTAATAAAATTTT
97232591 AAAATTTTAA
1 AAAATTTTAA
97232601 AATTTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
AAAATTTTAATAAAATTTT
Found at i:97232635 original size:9 final size:9
Alignment explanation
Indices: 97232591--97232657 Score: 57
Period size: 9 Copynumber: 7.4 Consensus size: 9
97232581 ATAAAATTTT
*
97232591 AAAATTTTA
1 AAAATTATA
*
97232600 AAATTTATA
1 AAAATTATA
*
97232609 AAAAATAGTA
1 AAAATTA-TA
97232619 AAAA--ATA
1 AAAATTATA
97232626 AAAATTATA
1 AAAATTATA
*
97232635 AAATTTTATA
1 AAA-ATTATA
*
97232645 AAAATCATA
1 AAAATTATA
97232654 AAAA
1 AAAA
97232658 AAAGTAACCA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.13
8 1 0.02
9 26 0.55
10 14 0.30
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAATTATA
Found at i:97232649 original size:35 final size:35
Alignment explanation
Indices: 97232591--97232658 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 35
97232581 ATAAAATTTT
*
97232591 AAAATTTTAAAATTTATAAAAAAT-AGTAAAAAATA
1 AAAATTATAAAATTTATAAAAAATCA-TAAAAAATA
97232626 AAAATTATAAAATTT-TATAAAAATCATAAAAAA
1 AAAATTATAAAATTTATA-AAAAATCATAAAAAA
97232659 AAGTAACCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 2 0.07
35 27 0.90
36 1 0.03
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (35 bp):
AAAATTATAAAATTTATAAAAAATCATAAAAAATA
Found at i:97232894 original size:26 final size:26
Alignment explanation
Indices: 97232836--97232931 Score: 86
Period size: 26 Copynumber: 3.5 Consensus size: 26
97232826 TCTTTACATC
* * *
97232836 TTTTATAATTTTCTAACGACTTTATAAAA
1 TTTTAT-ATTTT-TTACGA-TTTATATAT
*
97232865 TTTTATATTTTTTTA-TATTTATATAT
1 TTTTATA-TTTTTTACGATTTATATAT
*
97232891 TTTTATATTTTTTACGATTTTTATAT
1 TTTTATATTTTTTACGATTTATATAT
*
97232917 TTTTCTAATTTTTTA
1 TTTTAT-ATTTTTTA
97232932 ATAAATTTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
25 7 0.12
26 28 0.49
27 9 0.16
28 3 0.05
29 10 0.18
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (26 bp):
TTTTATATTTTTTACGATTTATATAT
Found at i:97232901 original size:8 final size:8
Alignment explanation
Indices: 97232864--97232920 Score: 60
Period size: 8 Copynumber: 6.8 Consensus size: 8
97232854 ACTTTATAAA
97232864 ATTTTATAT
1 ATTTT-TAT
*
97232873 TTTTTTAT
1 ATTTTTAT
*
97232881 ATTTATAT
1 ATTTTTAT
97232889 ATTTTTAT
1 ATTTTTAT
*
97232897 ATTTTTTACG
1 A-TTTTTA-T
97232907 ATTTTTAT
1 ATTTTTAT
97232915 ATTTTT
1 ATTTTT
97232921 CTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
8 23 0.57
9 16 0.40
10 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (8 bp):
ATTTTTAT
Found at i:97232931 original size:18 final size:16
Alignment explanation
Indices: 97232874--97232929 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 16
97232864 ATTTTATATT
*
97232874 TTTTTATA-TTTATATA
1 TTTTTATATTTTTTA-A
97232890 TTTTTATATTTTTTACGA
1 TTTTTATATTTTTTA--A
97232908 TTTTTATATTTTTCTAA
1 TTTTTATATTTTT-TAA
97232925 TTTTT
1 TTTTT
97232930 TAATAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 8 0.23
17 11 0.31
18 14 0.40
19 2 0.06
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTTATATTTTTTAA
Found at i:97232968 original size:26 final size:27
Alignment explanation
Indices: 97232922--97232973 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
97232912 TATATTTTTC
*
97232922 TAATTTTTTAATAAATTTTTAATAATT
1 TAATTTTTTAATAAATATTTAATAATT
*
97232949 TAATTTTTTATTAAA-ATTTAATAAT
1 TAATTTTTTAATAAATATTTAATAAT
97232974 ATTTATAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
TAATTTTTTAATAAATATTTAATAATT
Found at i:97233228 original size:88 final size:90
Alignment explanation
Indices: 97233035--97233231 Score: 247
Period size: 89 Copynumber: 2.2 Consensus size: 90
97233025 AATAAAAGCA
* * *
97233035 AGGGCTTAATTGCTTTTTTTGAAAATAGTTTCAACGTCTTTTTTATGCATTTTGAAAGTTCAAGT
1 AGGGCTTAATTGCTTTTTTTGAAAATAGTTTCAACGTCTTTTTGATACATTTTAAAAGTTCAAGT
* * *
97233100 ACTTAATTGAGTGCAAAAAAAAGGT
66 ACTCAATTGAATACAAAAAAAAGGT
** * ** *
97233125 AGGGCTTAATTGCTTTTTTTTTAAA-AGTTTGAGGGTCTTTTTGATACATTTTAAAAGTTTAAGT
1 AGGGCTTAATTGCTTTTTTTGAAAATAGTTTCAACGTCTTTTTGATACATTTTAAAAGTTCAAGT
*
97233189 GCTCAATTGAATAC-AAAAAAAGG-
66 ACTCAATTGAATACAAAAAAAAGGT
97233212 AGAGGCTTAATTGCTTTTTT
1 AG-GGCTTAATTGCTTTTTT
97233232 AAAAAAAAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
87 2 0.02
88 26 0.28
89 42 0.45
90 23 0.25
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (90 bp):
AGGGCTTAATTGCTTTTTTTGAAAATAGTTTCAACGTCTTTTTGATACATTTTAAAAGTTCAAGT
ACTCAATTGAATACAAAAAAAAGGT
Found at i:97233245 original size:88 final size:89
Alignment explanation
Indices: 97233035--97233254 Score: 214
Period size: 89 Copynumber: 2.5 Consensus size: 89
97233025 AATAAAAGCA
* * ** * * * *
97233035 AGGGCTTAATTGCTTTTTTTGAAAATAGTTTCA-ACGTCTTTTTTATGCATTTTGAAAGTTCAAG
1 AGGGCTTAATTGC-TTTTTTAAAAAAAAATTGAGA-GTCTTTTTGATACATTTTAAAAGTTCAAG
* * *
97233099 TACTTAATTGAGTGCAAAAAAAAGGT
64 TACTCAATTGAATACAAAAAAAAGGT
*** ** * * *
97233125 AGGGCTTAATTGCTTTTTTTTTAAAAGTTTGAGGGTCTTTTTGATACATTTTAAAAGTTTAAGTG
1 AGGGCTTAATTGCTTTTTTAAAAAAAAATTGAGAGTCTTTTTGATACATTTTAAAAGTTCAAGTA
97233190 CTCAATTGAATAC-AAAAAAAGG-
66 CTCAATTGAATACAAAAAAAAGGT
97233212 AGAGGCTTAATTGCTTTTTTAAAAAAAAATTGAGAG-CTTTTTG
1 AG-GGCTTAATTGCTTTTTTAAAAAAAAATTGAGAGTCTTTTTG
97233255 CACCTTTAAG
Statistics
Matches: 108, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
87 9 0.08
88 36 0.33
89 50 0.46
90 13 0.12
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (89 bp):
AGGGCTTAATTGCTTTTTTAAAAAAAAATTGAGAGTCTTTTTGATACATTTTAAAAGTTCAAGTA
CTCAATTGAATACAAAAAAAAGGT
Found at i:97237241 original size:27 final size:27
Alignment explanation
Indices: 97237192--97237244 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
97237182 ATATAAATAT
**
97237192 TAATAATTATATTATTCTCAAAAAAAA
1 TAATAATTATATTATAATCAAAAAAAA
97237219 TAATAATTATATTATAAAT-AAAAAAA
1 TAATAATTATATTAT-AATCAAAAAAA
97237245 CATACAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
TAATAATTATATTATAATCAAAAAAAA
Found at i:97240289 original size:21 final size:20
Alignment explanation
Indices: 97240266--97240363 Score: 99
Period size: 21 Copynumber: 4.7 Consensus size: 20
97240256 TACAACGTCT
*
97240266 TTTAAATCGATTGCTCTTATT
1 TTTAAATCGATTG-TCTTATG
*
97240287 TTTAAATCGATTGTCCATATG
1 TTTAAATCGATTGT-CTTATG
* *
97240308 TTTAAATTGATTTTTCTTATG
1 TTTAAATCGA-TTGTCTTATG
97240329 TTTAAATCGATTGT-TTATG
1 TTTAAATCGATTGTCTTATG
*
97240348 TGCTTAAATTGATTGT
1 T--TTAAATCGATTGT
97240364 ATTTTTGTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.09
20 4 0.06
21 52 0.80
22 3 0.05
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.52
Consensus pattern (20 bp):
TTTAAATCGATTGTCTTATG
Found at i:97240326 original size:42 final size:42
Alignment explanation
Indices: 97240266--97240362 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
97240256 TACAACGTCT
* *
97240266 TTTAAATCGATTGCTCTTATTTTTAAATCGATTGTCCATATG
1 TTTAAATTGATTGCTCTTATGTTTAAATCGATTGTCCATATG
** ** *
97240308 TTTAAATTGATTTTTCTTATGTTTAAATCGATTGTTTATGTG
1 TTTAAATTGATTGCTCTTATGTTTAAATCGATTGTCCATATG
*
97240350 CTTAAATTGATTG
1 TTTAAATTGATTG
97240363 TATTTTTGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.52
Consensus pattern (42 bp):
TTTAAATTGATTGCTCTTATGTTTAAATCGATTGTCCATATG
Found at i:97241091 original size:22 final size:23
Alignment explanation
Indices: 97241055--97241099 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
97241045 ATATTTAGCT
97241055 TTGATGTGCATTGTCTTGAGACC
1 TTGATGTGCATTGTCTTGAGACC
*
97241078 TTGATG-GGATTGTCTTGAGACC
1 TTGATGTGCATTGTCTTGAGACC
97241100 AACTTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.38
Consensus pattern (23 bp):
TTGATGTGCATTGTCTTGAGACC
Found at i:97243238 original size:38 final size:39
Alignment explanation
Indices: 97243046--97243250 Score: 272
Period size: 39 Copynumber: 5.3 Consensus size: 39
97243036 TGGGATACTA
* * *
97243046 ATTCTACTGAAAGTGTGCTCAATCGAGCCATAACTACTG
1 ATTCTACTGAAAGTATGCTCAATCGAGCCATACCCACTG
*
97243085 ATTCTACTGAAAGTATGCTCAATC-AGGCCATACCTACTG
1 ATTCTACTGAAAGTATGCTCAATCGA-GCCATACCCACTG
97243124 ATTCTACTGAAAGTATGCTCAATCGAGCCATACCCACTG
1 ATTCTACTGAAAGTATGCTCAATCGAGCCATACCCACTG
* *
97243163 ATTCTACTGAAAGTATGCTCAATTGAGCCATATCCACTG
1 ATTCTACTGAAAGTATGCTCAATCGAGCCATACCCACTG
* * **
97243202 ATTGTACTGAAAGT-TGCTCAAACGA-ATATTACCCACTG
1 ATTCTACTGAAAGTATGCTCAATCGAGCCA-TACCCACTG
*
97243240 ATTATACTGAA
1 ATTCTACTGAA
97243251 TAAAATCTCA
Statistics
Matches: 151, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 28 0.19
39 121 0.80
40 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (39 bp):
ATTCTACTGAAAGTATGCTCAATCGAGCCATACCCACTG
Found at i:97245449 original size:29 final size:29
Alignment explanation
Indices: 97245410--97245484 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
97245400 GGTTGAGAGA
* *
97245410 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
97245439 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
97245468 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
97245485 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:97253329 original size:29 final size:29
Alignment explanation
Indices: 97253294--97253368 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
97253284 CGGTTGTGAG
* *
97253294 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
97253323 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
97253352 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
97253369 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:97255855 original size:15 final size:15
Alignment explanation
Indices: 97255837--97255870 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
97255827 ATGAATTCTA
97255837 AAAAATAAAATA-AAG
1 AAAAATAAAA-ACAAG
97255852 AAAAATAAAAACAAG
1 AAAAATAAAAACAAG
97255867 AAAA
1 AAAA
97255871 TAAGTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.82, C:0.03, G:0.06, T:0.09
Consensus pattern (15 bp):
AAAAATAAAAACAAG
Found at i:97261726 original size:15 final size:15
Alignment explanation
Indices: 97261706--97261736 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97261696 AATTGTTACC
97261706 AGTGAAGGCAGATGG
1 AGTGAAGGCAGATGG
*
97261721 AGTGAAGGTAGATGG
1 AGTGAAGGCAGATGG
97261736 A
1 A
97261737 TGTGCATCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.03, G:0.45, T:0.16
Consensus pattern (15 bp):
AGTGAAGGCAGATGG
Found at i:97265125 original size:16 final size:15
Alignment explanation
Indices: 97265095--97265129 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
97265085 CTATTTTTTC
97265095 TTTT-TCTTTTAATT
1 TTTTATCTTTTAATT
97265109 TTTTATCTTTGTAATT
1 TTTTATCTTT-TAATT
97265125 TTTTA
1 TTTTA
97265130 AACTCAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 10 0.53
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTATCTTTTAATT
Found at i:97268807 original size:22 final size:22
Alignment explanation
Indices: 97268781--97268825 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
97268771 CTATGACGAG
* *
97268781 TTAGGTTTGGAATTTGAAGTTA
1 TTAGGTTTGAAATTTAAAGTTA
97268803 TTAGGTTTGAAATTTAAAGTTA
1 TTAGGTTTGAAATTTAAAGTTA
97268825 T
1 T
97268826 GGTTTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (22 bp):
TTAGGTTTGAAATTTAAAGTTA
Found at i:97273709 original size:15 final size:15
Alignment explanation
Indices: 97273689--97273717 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97273679 CAAAAATGAG
97273689 ATGTCCGAGACTCTA
1 ATGTCCGAGACTCTA
97273704 ATGTCCGAGACTCT
1 ATGTCCGAGACTCT
97273718 GATGCCGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (15 bp):
ATGTCCGAGACTCTA
Found at i:97280261 original size:25 final size:24
Alignment explanation
Indices: 97280218--97280382 Score: 100
Period size: 25 Copynumber: 6.6 Consensus size: 24
97280208 AAGTTCATGC
*
97280218 GAGCCAATAA-CGGGTAGCTCCAAA
1 GAGCC-ATAATCGGGAAGCTCCAAA
* *
97280242 GAGCCATTAATCGGGAAGCTTCAGA
1 GAGCCA-TAATCGGGAAGCTCCAAA
* * * *
97280267 TAGCCATATATCGGGAAGTTCTAAC
1 GAGCCATA-ATCGGGAAGCTCCAAA
* * * ***
97280292 GAACCAT-ATCAGGTAGCTCTGGA
1 GAGCCATAATCGGGAAGCTCCAAA
* *
97280315 GAGCCATTAATCAGGAGGCTCACAAA
1 GAGCCA-TAATCGGGAAGCTC-CAAA
*
97280341 GAGCCTTTAATCGGGAAGCTCACAAA
1 GAGCC-ATAATCGGGAAGCTC-CAAA
97280367 GAGCCATATATCGGGA
1 GAGCCATA-ATCGGGA
97280383 CGTTCATAAG
Statistics
Matches: 106, Mismatches: 27, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
23 16 0.15
24 11 0.10
25 44 0.42
26 35 0.33
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (24 bp):
GAGCCATAATCGGGAAGCTCCAAA
Found at i:97280350 original size:26 final size:26
Alignment explanation
Indices: 97280314--97280373 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
97280304 GTAGCTCTGG
*
97280314 AGAGCCATTAATCAGGAGGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
97280340 AGAGCCTTTAATCGGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
97280366 AGAGCCAT
1 AGAGCCAT
97280374 ATATCGGGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:97282328 original size:19 final size:19
Alignment explanation
Indices: 97282301--97282363 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
97282291 TATGTGTATC
*
97282301 TGTTCTGATTTGATGAAGA
1 TGTTATGATTTGATGAAGA
* **
97282320 TGTTATGATCT-A-G-ATC
1 TGTTATGATTTGATGAAGA
*
97282336 TGTTCTGATTTGATGAAGA
1 TGTTATGATTTGATGAAGA
97282355 TGTTATGAT
1 TGTTATGAT
97282364 CTGGTATCTG
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
16 10 0.31
17 2 0.06
18 2 0.06
19 18 0.56
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.44
Consensus pattern (19 bp):
TGTTATGATTTGATGAAGA
Found at i:97282344 original size:35 final size:35
Alignment explanation
Indices: 97282298--97282365 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
97282288 AAGTATGTGT
97282298 ATCTGTTCTGATTTGATGAAGATGTTATGATCTAG
1 ATCTGTTCTGATTTGATGAAGATGTTATGATCTAG
97282333 ATCTGTTCTGATTTGATGAAGATGTTATGATCT
1 ATCTGTTCTGATTTGATGAAGATGTTATGATCT
97282366 GGTATCTGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (35 bp):
ATCTGTTCTGATTTGATGAAGATGTTATGATCTAG
Found at i:97282568 original size:40 final size:38
Alignment explanation
Indices: 97282503--97282600 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 38
97282493 ACATGCCACC
*
97282503 ACTTGGTGTGTAGGGTTGGAAGGGTTGATTTCATCCCCAT
1 ACTTGGTGTGTAGGGCTGGAAGGGTTGATTTCAT-CCC-T
** *
97282543 ACTTGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCT
1 ACTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCT
* * *
97282581 ACATGGTGTGTTGGGTTGGA
1 ACTTGGTGTGTAGGGCTGGA
97282601 CAGAGATGGT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
38 17 0.34
39 3 0.06
40 30 0.60
ACGTcount: A:0.14, C:0.12, G:0.37, T:0.37
Consensus pattern (38 bp):
ACTTGGTGTGTAGGGCTGGAAGGGTTGATTTCATCCCT
Found at i:97294245 original size:27 final size:27
Alignment explanation
Indices: 97294215--97294280 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
97294205 ACACTCATGC
97294215 CTTTGTTTCAAAAGT-ATAAAATCAAGT
1 CTTTGTTTCAAAA-TCATAAAATCAAGT
97294242 CTTTGTTTCAAAATCATAAAATCAAGT
1 CTTTGTTTCAAAATCATAAAATCAAGT
* *
97294269 CATTGATTCAAA
1 CTTTGTTTCAAA
97294281 TTGAACTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (27 bp):
CTTTGTTTCAAAATCATAAAATCAAGT
Found at i:97294496 original size:20 final size:20
Alignment explanation
Indices: 97294466--97294505 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
97294456 AAGACATCTA
97294466 AACATCTTAGAAAATGTTTTG
1 AACATCTTAGAAAAT-TTTTG
97294487 AACA-CTTAGAAAATTTTTG
1 AACATCTTAGAAAATTTTTG
97294506 GACAAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (20 bp):
AACATCTTAGAAAATTTTTG
Found at i:97298136 original size:25 final size:25
Alignment explanation
Indices: 97298081--97298138 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
97298071 TTGCCAAGCT
97298081 CGAAGCCTGATATAACACATCAGCA
1 CGAAGCCTGATATAACACATCAGCA
* * * *
97298106 CAAAGCCTGATATAATACATCGGCG
1 CGAAGCCTGATATAACACATCAGCA
97298131 CGAAGCCT
1 CGAAGCCT
97298139 TCTAGGCACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.17
Consensus pattern (25 bp):
CGAAGCCTGATATAACACATCAGCA
Found at i:97298182 original size:38 final size:38
Alignment explanation
Indices: 97298133--97298257 Score: 153
Period size: 38 Copynumber: 3.3 Consensus size: 38
97298123 CATCGGCGCG
* *
97298133 AAGCCTTCTAGGCACAGAGCCCGAATATCACCAGCACA
1 AAGCCTACTAGGAACAGAGCCCGAATATCACCAGCACA
* * *
97298171 AAACCTACTAGGAACAGAGCTCGAATATCACCGGCACA
1 AAGCCTACTAGGAACAGAGCCCGAATATCACCAGCACA
** *
97298209 AAGCC-AGCTAGGAACAGAGCATGAATATCATCAGCACA
1 AAGCCTA-CTAGGAACAGAGCCCGAATATCACCAGCACA
*
97298247 ATGCCTACTAG
1 AAGCCTACTAG
97298258 ACACATAGCC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 72 0.97
39 1 0.01
ACGTcount: A:0.38, C:0.29, G:0.19, T:0.14
Consensus pattern (38 bp):
AAGCCTACTAGGAACAGAGCCCGAATATCACCAGCACA
Found at i:97307780 original size:29 final size:30
Alignment explanation
Indices: 97307723--97307784 Score: 99
Period size: 29 Copynumber: 2.0 Consensus size: 30
97307713 TTAAAATAAG
97307723 TATAAAACATATAAAAAAAAATACAATGCTAA
1 TATAAAACATAT--AAAAAAATACAATGCTAA
97307755 TATAAAACATAT-AAAAAATACAATGCTAA
1 TATAAAACATATAAAAAAATACAATGCTAA
97307784 T
1 T
97307785 GTTCATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 18 0.60
32 12 0.40
ACGTcount: A:0.63, C:0.10, G:0.03, T:0.24
Consensus pattern (30 bp):
TATAAAACATATAAAAAAATACAATGCTAA
Found at i:97309229 original size:17 final size:17
Alignment explanation
Indices: 97309209--97309247 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
97309199 AAAACAATAT
*
97309209 TATTTTAATAGATTTAA
1 TATTTGAATAGATTTAA
* *
97309226 TATTTGATTTGATTTAA
1 TATTTGAATAGATTTAA
97309243 TATTT
1 TATTT
97309248 ATCTTAATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (17 bp):
TATTTGAATAGATTTAA
Found at i:97311642 original size:16 final size:16
Alignment explanation
Indices: 97311623--97311653 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97311613 GTACAAAATA
97311623 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
97311639 ATATAACATTTATAA
1 ATATAAAATTTATAA
97311654 AAAAAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:97315061 original size:47 final size:46
Alignment explanation
Indices: 97314763--97315074 Score: 192
Period size: 46 Copynumber: 6.6 Consensus size: 46
97314753 TTTGTGCGCT
* *
97314763 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGA--GATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATAGGC-TTGATGGAT--GAGCC
* * * * *
97314810 AATGTAAGACACGTCTGGGACAT-GCATAGGCCTCA-AGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATAGGCTTGATGGATG--AGCC
* * *
97314856 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-T-ATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATAGGCTTGATG-GATGAGCC
* * **
97314900 AGTGTAAGACCATGTCTGGGACATGCCATGGGTACGGAGATGTGA-GAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATAGG--C-TTGATG-GATGAGCC
* * * ** * *
97314950 AGTGTAAGACCATGTCTAGGACATGGCGTCAGCCTCAATTTTGAT-AGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCAT-AGGCTTGA--TGGATGAGCC
* *
97314999 AGTGTAAGATCATGTCTGGGACATGGCATTGACTTGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATAGGCTTGATGGATGAGCC
*
97315046 AGTGTAAGACCATGTCTGGGACGTGGCAT
1 AGTGTAAGA-CATGTCTGGGACATGGCAT
97315075 CAGCATTACA
Statistics
Matches: 209, Mismatches: 39, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
44 13 0.06
45 17 0.08
46 54 0.26
47 51 0.24
48 6 0.03
49 32 0.15
50 30 0.14
51 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATAGGCTTGATGGATGAGCC
Found at i:97315078 original size:96 final size:99
Alignment explanation
Indices: 97314897--97315078 Score: 255
Period size: 96 Copynumber: 1.9 Consensus size: 99
97314887 TATGAGATGT
97314897 GTCAGTGTAAGACCATGTCTGGGACATGCCATGGGTACGGAGATGTGAGAGCCAGTGTAAGACCA
1 GTCAGTGTAAGACCATGTCTGGGACATGCCATGGGTACGGAGATGTGAGAGCCAGTGTAAGACCA
*
97314962 TGTCTAGGACATGGCGTCAGCCTCAATTTTGATA
66 TGTCTAGGACATGGCATCAGCCTCAATTTTGATA
* * * **
97314996 GTCAGTGTAAGATCATGTCTGGGACATGGCAT-TG-AC-TTGATG-GATGAGCCAGTGTAAGACC
1 GTCAGTGTAAGACCATGTCTGGGACATGCCATGGGTACGGAGATGTGA-GAGCCAGTGTAAGACC
* *
97315057 ATGTCTGGGACGTGGCATCAGC
65 ATGTCTAGGACATGGCATCAGC
97315079 ATTACACCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.03
96 39 0.53
97 2 0.03
98 1 0.01
99 30 0.41
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (99 bp):
GTCAGTGTAAGACCATGTCTGGGACATGCCATGGGTACGGAGATGTGAGAGCCAGTGTAAGACCA
TGTCTAGGACATGGCATCAGCCTCAATTTTGATA
Found at i:97328062 original size:68 final size:69
Alignment explanation
Indices: 97327938--97328072 Score: 191
Period size: 68 Copynumber: 2.0 Consensus size: 69
97327928 TGATTAAACT
** * *
97327938 TAATAACTTTAAAATTAAATTAATGTAATACTTATCAAGATAAATATTAGATTAAATTTAATATT
1 TAATAACTTTAAAATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTAAATTAAATATT
97328003 AAGA
66 AAGA
* * * *
97328007 TAATCACTTTAATATTAAATTAATAAAATA-TTATTAGGATAAATATTAAATTAAATTAAATATT
1 TAATAACTTTAAAATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTAAATTAAATATT
97328071 AA
66 AA
97328073 ATTTATTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
68 32 0.55
69 26 0.45
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (69 bp):
TAATAACTTTAAAATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTAAATTAAATATT
AAGA
Found at i:97328066 original size:17 final size:17
Alignment explanation
Indices: 97327978--97328088 Score: 72
Period size: 17 Copynumber: 6.5 Consensus size: 17
97327968 CTTATCAAGA
*
97327978 TAAATATTAGATTAAAT
1 TAAATATTAAATTAAAT
*
97327995 TTAATATTAAGA-TAATCACT
1 TAAATATTAA-ATTAA--A-T
*
97328015 TTAATATTAAATT-AAT
1 TAAATATTAAATTAAAT
* *
97328031 AAAATATT--ATTAGGA-
1 TAAATATTAAATTA-AAT
97328046 TAAATATTAAATTAAAT
1 TAAATATTAAATTAAAT
*
97328063 TAAATATTAAATT-TAT
1 TAAATATTAAATTAAAT
97328079 TAAAATATTA
1 T-AAATATTA
97328089 TTATTTTTGA
Statistics
Matches: 75, Mismatches: 8, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.04
15 7 0.09
16 12 0.16
17 37 0.49
18 1 0.01
19 3 0.04
20 12 0.16
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (17 bp):
TAAATATTAAATTAAAT
Found at i:97332085 original size:16 final size:16
Alignment explanation
Indices: 97332064--97332095 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97332054 GATTTATGTA
97332064 ATATAATTTATTTAAT
1 ATATAATTTATTTAAT
97332080 ATATAATTTATTTAAT
1 ATATAATTTATTTAAT
97332096 TTACTTTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATAATTTATTTAAT
Found at i:97333120 original size:19 final size:19
Alignment explanation
Indices: 97333096--97333133 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
97333086 TGTGGTTGAG
* *
97333096 AAAATATTTTTTATTTTAA
1 AAAATATTTCTCATTTTAA
97333115 AAAATATTTCTCATTTTAA
1 AAAATATTTCTCATTTTAA
97333134 CAACATCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
AAAATATTTCTCATTTTAA
Found at i:97341231 original size:13 final size:13
Alignment explanation
Indices: 97341215--97341254 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
97341205 TAATTAGAGT
97341215 AAATAATAATATA
1 AAATAATAATATA
*
97341228 AAATTAA-AATCTA
1 AAA-TAATAATATA
97341241 AAATAATAATATA
1 AAATAATAATATA
97341254 A
1 A
97341255 TATAGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.13
13 17 0.74
14 3 0.13
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAATAATATA
Found at i:97345322 original size:133 final size:133
Alignment explanation
Indices: 97345126--97345464 Score: 349
Period size: 134 Copynumber: 2.5 Consensus size: 133
97345116 CGAGAAATCA
* * * * * ** * * *
97345126 CAACCCAGCACGATAGGGCATGATT-CTCGAATTGTCAAACGCCGAATATTGCTTTCGTTTTAAA
1 CAACCCAACACGTTAAGGCACGATTCCGCGAATTGTCAAACATCGAATCTCGCCTTCGTTTTAAA
* * * * * * * **
97345190 TAATTTTTTAAAATATATGAATGAATTTTTGAAGGGGTACTCGATCATTTTAAGCAAACACGAAA
66 GAATTTTTTAAAAGACATGAAGGAAATCTTGAAAGGACACTCGATCATTTTAAGCAAACACGAAA
97345255 TTG
131 TTG
* * *
97345258 CAACCCAACACGTTAAGGCACTATTCCGCGAATTG-CAAAATATCGAATTTCGCCTTCGTTTTAA
1 CAACCCAACACGTTAAGGCACGATTCCGCGAATTGTC-AAACATCGAATCTCGCCTTCGTTTTAA
* * * * * *
97345322 AGAATTCTTTTAAAAGGCATGAGGGAAATCTTGAAAGGACATTCGATTATTTTGAGCAAACGCGA
65 AGAATT-TTTTAAAAGACATGAAGGAAATCTTGAAAGGACACTCGATCATTTTAAGCAAACACGA
97345387 AATTG
129 AATTG
* * * * *
97345392 CCACCCAACACGTTAGGGCACGATTCCGCGAATTGTCAAACATCGAATCTCGTCTTCATTTTGAA
1 CAACCCAACACGTTAAGGCACGATTCCGCGAATTGTCAAACATCGAATCTCGCCTTCGTTTTAAA
97345457 GAATTTTT
66 GAATTTTT
97345465 GAATGAATGA
Statistics
Matches: 168, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
132 21 0.12
133 37 0.22
134 109 0.65
135 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (133 bp):
CAACCCAACACGTTAAGGCACGATTCCGCGAATTGTCAAACATCGAATCTCGCCTTCGTTTTAAA
GAATTTTTTAAAAGACATGAAGGAAATCTTGAAAGGACACTCGATCATTTTAAGCAAACACGAAA
TTG
Found at i:97345547 original size:21 final size:21
Alignment explanation
Indices: 97345523--97345564 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
97345513 ATAAGACAAA
97345523 GTTAAATCATAAAACTTGGGT
1 GTTAAATCATAAAACTTGGGT
97345544 GTTAAATCATAAAACTTGGGT
1 GTTAAATCATAAAACTTGGGT
97345565 TTTAGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (21 bp):
GTTAAATCATAAAACTTGGGT
Found at i:97346169 original size:20 final size:20
Alignment explanation
Indices: 97346146--97346191 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
97346136 TATATGTAAA
* *
97346146 AAAAATAATTTAATT-TTTTT
1 AAAAATAA-ATAATTATTTGT
97346166 AAAAA-AAATAATTATTTGT
1 AAAAATAAATAATTATTTGT
97346185 AAAAATA
1 AAAAATA
97346192 TAAAAATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 5 0.23
19 11 0.50
20 6 0.27
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAAATAAATAATTATTTGT
Found at i:97346256 original size:2 final size:2
Alignment explanation
Indices: 97346249--97346277 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
97346239 AGATTTAGAA
97346249 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97346278 GAATATGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97348275 original size:28 final size:28
Alignment explanation
Indices: 97348222--97348275 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
97348212 TGAAGGATGG
* *
97348222 TAAAAATAGAAAACTATATTTCTAAAAA
1 TAAAAATAGAAAACTATAATTATAAAAA
97348250 TAAAAATAGAAGAACTA-AATTATAAA
1 TAAAAATAGAA-AACTATAATTATAAA
97348276 TGTATGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (28 bp):
TAAAAATAGAAAACTATAATTATAAAAA
Found at i:97353264 original size:16 final size:16
Alignment explanation
Indices: 97353243--97353274 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97353233 AGCAACTCGG
97353243 GAAGTCATCATAAACC
1 GAAGTCATCATAAACC
97353259 GAAGTCATCATAAACC
1 GAAGTCATCATAAACC
97353275 CTATCTTTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (16 bp):
GAAGTCATCATAAACC
Found at i:97356541 original size:32 final size:34
Alignment explanation
Indices: 97356475--97356546 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 34
97356465 TCTCTTCTTT
*
97356475 TTTTTTTCTTTTTGGTTACATGAACTAATTAATTAAC
1 TTTTTTTCTTTTTGGTTACATGAAC--A-CAATTAAC
97356512 TTTTTTT-TTTTTGGTTACATGAAC-CAATTAAC
1 TTTTTTTCTTTTTGGTTACATGAACACAATTAAC
97356544 TTT
1 TTT
97356547 GATTCATTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
32 10 0.29
36 17 0.50
37 7 0.21
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.56
Consensus pattern (34 bp):
TTTTTTTCTTTTTGGTTACATGAACACAATTAAC
Found at i:97356680 original size:17 final size:17
Alignment explanation
Indices: 97356658--97356690 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97356648 TATTTATTTA
*
97356658 TCGATAAACTAATAATC
1 TCGATAAAATAATAATC
97356675 TCGATAAAATAATAAT
1 TCGATAAAATAATAAT
97356691 TTTTTCGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (17 bp):
TCGATAAAATAATAATC
Found at i:97358011 original size:14 final size:15
Alignment explanation
Indices: 97357982--97358013 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
97357972 AAAAACATCA
97357982 TAATTTTATCTATTT
1 TAATTTTATCTATTT
97357997 TAATTTTAT-TATTT
1 TAATTTTATCTATTT
97358011 TAA
1 TAA
97358014 CTATAACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTATCTATTT
Found at i:97365935 original size:19 final size:19
Alignment explanation
Indices: 97365911--97365963 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
97365901 AACTTGGCTC
*
97365911 AATAATTAAATTTAAGGTT
1 AATAATTAAATTTAAGGGT
*
97365930 AATAA-TATATATTAAGGGT
1 AATAATTAAAT-TTAAGGGT
97365949 AATAATGT-AATTTAA
1 AATAAT-TAAATTTAA
97365964 TAATATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 4 0.14
19 21 0.75
20 2 0.07
21 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (19 bp):
AATAATTAAATTTAAGGGT
Found at i:97366367 original size:23 final size:21
Alignment explanation
Indices: 97366313--97366368 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
97366303 AAAAATTCTG
97366313 AAATTTTATAA-TATATAAATA
1 AAATTTTA-AATTATATAAATA
**
97366334 AAATTAAAAATTATATAAAATTA
1 AAATTTTAAATTATAT-AAA-TA
97366357 AAATTTTAAATT
1 AAATTTTAAATT
97366369 TTACTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 11 0.39
22 3 0.11
23 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATTTTAAATTATATAAATA
Found at i:97367001 original size:11 final size:11
Alignment explanation
Indices: 97366985--97367017 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
97366975 TTATTTTGGT
97366985 TTTTCTATATA
1 TTTTCTATATA
97366996 TTTTCTATA-A
1 TTTTCTATATA
*
97367006 TTTTTTATATA
1 TTTTCTATATA
97367017 T
1 T
97367018 ATATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTCTATATA
Found at i:97367031 original size:25 final size:25
Alignment explanation
Indices: 97366990--97367075 Score: 83
Period size: 25 Copynumber: 3.5 Consensus size: 25
97366980 TTGGTTTTTC
97366990 TATATATTTTCTATAATTTTTTATATA
1 TATATATTTT-T-TAATTTTTTATATA
97367017 TATATATTTTTTAA-TTTTTA-A-A
1 TATATATTTTTTAATTTTTTATATA
** *
97367039 TA-ATATTTTTTGAATTAGTTATGTA
1 TATATATTTTTT-AATTTTTTATATA
97367064 T-TATATTTTTTA
1 TATATATTTTTTA
97367076 TTTATATAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
21 9 0.18
22 5 0.10
23 5 0.10
24 7 0.14
25 14 0.27
26 1 0.02
27 10 0.20
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (25 bp):
TATATATTTTTTAATTTTTTATATA
Done.