Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 334 of 427
Found at i:97367044 original size:27 final size:27
Alignment explanation
Indices: 97366990--97367049 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
97366980 TTGGTTTTTC
*
97366990 TATATATTTTCTATAATTTTTTATATA
1 TATATATTTTCTATAATTTTTAATATA
97367017 TATATATTTT-T-TAATTTTTAA-ATA
1 TATATATTTTCTATAATTTTTAATATA
*
97367041 -ATATTTTTT
1 TATATATTTT
97367050 GAATTAGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 8 0.26
24 3 0.10
25 9 0.29
26 1 0.03
27 10 0.32
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (27 bp):
TATATATTTTCTATAATTTTTAATATA
Found at i:97367479 original size:12 final size:11
Alignment explanation
Indices: 97367462--97367495 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
97367452 TAAAATCTAA
97367462 ATTATATTTTAT
1 ATTATATTTT-T
97367474 ATTATATTTTT
1 ATTATATTTTT
97367485 ATTAATATTTT
1 ATT-ATATTTT
97367496 CTGAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTATATTTTT
Found at i:97370794 original size:59 final size:59
Alignment explanation
Indices: 97370718--97370837 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
97370708 TGATAAAAGA
97370718 AAGAGGGTTTAAAAGGCAAATAGACCCAAGGTCTATTTAGGCTGGACGACAAGGGCATG
1 AAGAGGGTTTAAAAGGCAAATAGACCCAAGGTCTATTTAGGCTGGACGACAAGGGCATG
* * *
97370777 AAGATGGTTTAAAAGGCAAATAGACCCAAGGTCTATTTGGGCTGGACGGCAAGGGCATG
1 AAGAGGGTTTAAAAGGCAAATAGACCCAAGGTCTATTTAGGCTGGACGACAAGGGCATG
97370836 AA
1 AA
97370838 ATCAATAAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (59 bp):
AAGAGGGTTTAAAAGGCAAATAGACCCAAGGTCTATTTAGGCTGGACGACAAGGGCATG
Found at i:97372653 original size:48 final size:48
Alignment explanation
Indices: 97372581--97372677 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
97372571 TGGATAAGTG
* *
97372581 GTAGTGAGTTTATACAAGGGAACTCACCAATGATTGTGGTTAACAAAT
1 GTAGTAAGTTTATACAAGGAAACTCACCAATGATTGTGGTTAACAAAT
97372629 GTAGTAAGTTTATACAAGGAAACTCACCAATGATTGTGGTTAACAAAT
1 GTAGTAAGTTTATACAAGGAAACTCACCAATGATTGTGGTTAACAAAT
97372677 G
1 G
97372678 AACTTAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (48 bp):
GTAGTAAGTTTATACAAGGAAACTCACCAATGATTGTGGTTAACAAAT
Found at i:97373402 original size:18 final size:18
Alignment explanation
Indices: 97373381--97373418 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
97373371 GGTAAAAAGG
97373381 TTAGGTAATTTAAATATA
1 TTAGGTAATTTAAATATA
*
97373399 TTAGGTAATTTAATTATA
1 TTAGGTAATTTAAATATA
97373417 TT
1 TT
97373419 TATCCTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (18 bp):
TTAGGTAATTTAAATATA
Found at i:97376794 original size:20 final size:20
Alignment explanation
Indices: 97376749--97376798 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
97376739 ATTTATTTTC
97376749 ATTTATCTTTATCTATCTTT
1 ATTTATCTTTATCTATCTTT
*
97376769 AATTATCTTTAAT-TAT-TTGT
1 ATTTATCTTT-ATCTATCTT-T
97376789 ATTTATCTTT
1 ATTTATCTTT
97376799 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTATCTTTATCTATCTTT
Found at i:97377546 original size:17 final size:18
Alignment explanation
Indices: 97377518--97377551 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
97377508 TATTCTTCAT
97377518 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGTAATTTA
97377536 TTTAA-TTTCGTAATTT
1 TTTAATTTTCGTAATTT
97377552 CGATTCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (18 bp):
TTTAATTTTCGTAATTTA
Found at i:97377605 original size:34 final size:34
Alignment explanation
Indices: 97377565--97377650 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 34
97377555 TTCAACTTAA
*
97377565 AATTCTGTTTTTATTTTTCTAGATCGAAAATCTT
1 AATTCTGTTTTTATTTTTCCAGATCGAAAATCTT
97377599 AATTCTGTTTTTATTTTTCCAGATCGAAAATCTT
1 AATTCTGTTTTTATTTTTCCAGATCGAAAATCTT
*
97377633 AATTCTATTTTTATTTTT
1 AATTCTGTTTTTATTTTT
97377651 TAGGAATGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.26, C:0.12, G:0.07, T:0.56
Consensus pattern (34 bp):
AATTCTGTTTTTATTTTTCCAGATCGAAAATCTT
Found at i:97380413 original size:5 final size:5
Alignment explanation
Indices: 97380397--97380453 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
97380387 ACCCAAATTT
* *
97380397 TTTTA -TTT- TTTTA TTTTA CTTTA TCTTA CTATTTA --TTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -T-TTTA TTTTA TTTTA TTTTA
97380445 TTTTA TTTT
1 TTTTA TTTT
97380454 GGATGTTGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
3 3 0.07
4 6 0.14
5 29 0.69
6 1 0.02
7 3 0.07
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:97382029 original size:10 final size:10
Alignment explanation
Indices: 97382003--97382062 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
97381993 TAAATTTAGG
97382003 ATTTAT-TTT
1 ATTTATCTTT
97382012 CATTTATCTTT
1 -ATTTATCTTT
*
97382023 ATCTATCTTT
1 ATTTATCTTT
*
97382033 AATTATCTTT
1 ATTTATCTTT
97382043 ATTTAT-TTAT
1 ATTTATCTT-T
97382053 ATTTATCTTT
1 ATTTATCTTT
97382063 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:97392681 original size:26 final size:26
Alignment explanation
Indices: 97392646--97392708 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
97392636 CACCATACGG
97392646 GTGGCCCAAAGAATCACCATCAAGGT
1 GTGGCCCAAAGAATCACCATCAAGGT
97392672 GTGGCCCAAAGAATCACCATCAAGGT
1 GTGGCCCAAAGAATCACCATCAAGGT
97392698 GTGGCCCAAAG
1 GTGGCCCAAAG
97392709 GAACGACGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.14
Consensus pattern (26 bp):
GTGGCCCAAAGAATCACCATCAAGGT
Found at i:97392902 original size:21 final size:21
Alignment explanation
Indices: 97392878--97392918 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97392868 AACCAATTGT
*
97392878 GAGACCATCAATTTTGACCAG
1 GAGACCACCAATTTTGACCAG
*
97392899 GAGACCCCCAATTTTGACCA
1 GAGACCACCAATTTTGACCA
97392919 TAGGCAGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (21 bp):
GAGACCACCAATTTTGACCAG
Found at i:97396743 original size:32 final size:32
Alignment explanation
Indices: 97396707--97396803 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
97396697 TGTATGCATT
97396707 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
97396739 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
97396771 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
97396803 T
1 T
97396804 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:97399956 original size:12 final size:12
Alignment explanation
Indices: 97399939--97399985 Score: 94
Period size: 12 Copynumber: 3.9 Consensus size: 12
97399929 ACTCGGGGAA
97399939 GAGGCCGTGGTC
1 GAGGCCGTGGTC
97399951 GAGGCCGTGGTC
1 GAGGCCGTGGTC
97399963 GAGGCCGTGGTC
1 GAGGCCGTGGTC
97399975 GAGGCCGTGGT
1 GAGGCCGTGGT
97399986 AGTACTCAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.09, C:0.23, G:0.51, T:0.17
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:97404840 original size:25 final size:27
Alignment explanation
Indices: 97404800--97404875 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 27
97404790 TGTATGCATT
97404800 TTAGCATTTTAATAGTTAATGAT-GCA
1 TTAGCATTTTAATAGTTAATGATGGCA
97404826 TTAGCA-TTTAATAGTTAATGATGATGGCA
1 TTAGCATTTTAATAGTT-A--ATGATGGCA
97404855 TTAGCATTTTAATAGTTAATG
1 TTAGCATTTTAATAGTTAATG
97404876 GATGATGGGC
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
25 10 0.22
26 7 0.16
27 3 0.07
28 5 0.11
29 10 0.22
30 10 0.22
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (27 bp):
TTAGCATTTTAATAGTTAATGATGGCA
Found at i:97406395 original size:26 final size:26
Alignment explanation
Indices: 97406366--97406418 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
97406356 TTTACAGTTT
97406366 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
97406392 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
97406418 T
1 T
97406419 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:97412357 original size:31 final size:31
Alignment explanation
Indices: 97412321--97412415 Score: 165
Period size: 31 Copynumber: 3.0 Consensus size: 31
97412311 TGTATGCATT
97412321 TTAGCATTTTAATAGTTAATGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGATGATGGGCA
97412352 TTAGCATTTTAATAGTTAATGAATGAT-GGCA
1 TTAGCATTTTAATAGTTAATG-ATGATGGGCA
97412383 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAAT-GATGATGGGCA
97412415 T
1 T
97412416 GATAAGCATT
Statistics
Matches: 61, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
31 50 0.82
32 11 0.18
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (31 bp):
TTAGCATTTTAATAGTTAATGATGATGGGCA
Found at i:97415004 original size:11 final size:11
Alignment explanation
Indices: 97414988--97415021 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
97414978 CGGGGAAGAG
97414988 GCCGTGGTCGA
1 GCCGTGGTCGA
97414999 GCCGT-GTCGA
1 GCCGTGGTCGA
97415009 GGCCGTGGTCGA
1 -GCCGTGGTCGA
97415021 G
1 G
97415022 GCCGAGGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 5 0.24
11 11 0.52
12 5 0.24
ACGTcount: A:0.09, C:0.26, G:0.47, T:0.18
Consensus pattern (11 bp):
GCCGTGGTCGA
Found at i:97415021 original size:12 final size:12
Alignment explanation
Indices: 97414985--97415025 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
97414975 ACTCGGGGAA
97414985 GAGGCCGTGGTC
1 GAGGCCGTGGTC
97414997 GA-GCCGT-GTC
1 GAGGCCGTGGTC
97415007 GAGGCCGTGGTC
1 GAGGCCGTGGTC
97415019 GAGGCCG
1 GAGGCCG
97415026 AGGTAGTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.19
11 10 0.37
12 12 0.44
ACGTcount: A:0.10, C:0.27, G:0.49, T:0.15
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:97419897 original size:32 final size:32
Alignment explanation
Indices: 97419861--97419956 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
97419851 TGTATGCATT
97419861 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
97419893 TTAGCATTTTAATAGTTAATGAATGAT-GGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
97419924 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
97419956 T
1 T
97419957 GATAAGCATT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.49
32 31 0.51
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:97419927 original size:31 final size:31
Alignment explanation
Indices: 97419861--97419952 Score: 166
Period size: 31 Copynumber: 2.9 Consensus size: 31
97419851 TGTATGCATT
97419861 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGAT-GGCA
*
97419893 TTAGCATTTTAATAGTTAATGAATGATGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGCA
97419924 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
97419953 GCATGATAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
31 32 0.55
32 26 0.45
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (31 bp):
TTAGCATTTTAATAGTTAATGGATGATGGCA
Found at i:97424519 original size:21 final size:21
Alignment explanation
Indices: 97424459--97424521 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
97424449 ATTTATATTC
97424459 TTTATATTTATTTACGTA-CTTA
1 TTTATATTTA-TTA-GTATCTTA
*
97424481 TTTATTTATTTCTT--TATCTTA
1 TTTA--TATTTATTAGTATCTTA
97424502 TTTATATTTATTAGTATCTT
1 TTTATATTTATTAGTATCTT
97424522 CCTTTTAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
19 7 0.21
20 2 0.06
21 14 0.41
22 4 0.12
23 2 0.06
24 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTATATTTATTAGTATCTTA
Found at i:97424625 original size:3 final size:3
Alignment explanation
Indices: 97424617--97424671 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
97424607 TTTAGATTTC
97424617 ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
97424664 ATT ATT AT
1 ATT ATT AT
97424672 ATGTTAGTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:97426393 original size:20 final size:22
Alignment explanation
Indices: 97426360--97426415 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
97426350 TATTAATTAC
* *
97426360 TTTTATTATTATTA-ATAA-AT
1 TTTTAATATAATTATATAATAT
97426380 TTTTAATATAATTATATAATAT
1 TTTTAATATAATTATATAATAT
*
97426402 TTATAAATATAATT
1 TT-TTAATATAATT
97426416 TCATAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.40
21 4 0.13
22 4 0.13
23 10 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTAATATAATTATATAATAT
Found at i:97427021 original size:14 final size:15
Alignment explanation
Indices: 97426997--97427034 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
97426987 TTTAATTTTT
97426997 ATATAATATAAATAA
1 ATATAATATAAATAA
97427012 ATAT-ATATAAATAA
1 ATATAATATAAATAA
97427026 A-ATAATATA
1 ATATAATATA
97427035 TTATACCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 16 0.73
15 4 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATAATATAAATAA
Found at i:97427039 original size:19 final size:20
Alignment explanation
Indices: 97426995--97427039 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 20
97426985 CATTTAATTT
97426995 TTATATAATATAAATAAATA
1 TTATATAATATAAATAAATA
97427015 -TATATAA-ATAAAATAATATA
1 TTATATAATAT-AAATAA-ATA
97427035 TTATA
1 TTATA
97427040 CCTTATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.09
19 13 0.59
20 3 0.14
21 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TTATATAATATAAATAAATA
Found at i:97444045 original size:35 final size:36
Alignment explanation
Indices: 97443928--97444093 Score: 196
Period size: 35 Copynumber: 4.6 Consensus size: 36
97443918 TCCTCATTGA
** *
97443928 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
97443963 AATGCCA-ACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
97444002 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
97444037 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
*
97444072 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
97444094 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
34 22 0.19
35 64 0.56
38 2 0.02
39 7 0.06
40 20 0.17
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:97446168 original size:12 final size:14
Alignment explanation
Indices: 97446150--97446185 Score: 58
Period size: 12 Copynumber: 2.7 Consensus size: 14
97446140 TCGTAAAGAA
97446150 ATGATAAATTG-AT
1 ATGATAAATTGAAT
97446163 -TGATAAATTGAAT
1 ATGATAAATTGAAT
97446176 ATGATAAATT
1 ATGATAAATT
97446186 ACAATTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (14 bp):
ATGATAAATTGAAT
Found at i:97447866 original size:38 final size:39
Alignment explanation
Indices: 97447799--97447879 Score: 112
Period size: 38 Copynumber: 2.1 Consensus size: 39
97447789 GTGTTTTACT
* *
97447799 TTCTGTTTGGCGTGATTGGGTGGATCAGCTCTTACGAGC
1 TTCTGTTTGGCGTGATTGGGAGGACCAGCTCTTACGAGC
*
97447838 TTCTG-TTGGCGT-ATTCGGGAGGACCAGCTCTTATGAGC
1 TTCTGTTTGGCGTGATT-GGGAGGACCAGCTCTTACGAGC
97447876 TTCT
1 TTCT
97447880 ATTGACTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 3 0.08
38 30 0.79
39 5 0.13
ACGTcount: A:0.14, C:0.20, G:0.31, T:0.36
Consensus pattern (39 bp):
TTCTGTTTGGCGTGATTGGGAGGACCAGCTCTTACGAGC
Found at i:97451063 original size:1 final size:1
Alignment explanation
Indices: 97451059--97451083 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
97451049 TAAGTCCTTG
97451059 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
97451084 ACAAAGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:97452011 original size:12 final size:12
Alignment explanation
Indices: 97451980--97452013 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
97451970 TAATTAGATA
*
97451980 TATATTTATATT
1 TATATTTGTATT
97451992 TATATTTGTATT
1 TATATTTGTATT
*
97452004 TGTATTTGTA
1 TATATTTGTA
97452014 GTACTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (12 bp):
TATATTTGTATT
Found at i:97453317 original size:15 final size:15
Alignment explanation
Indices: 97453293--97453340 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
97453283 GTGTTTAAAA
*
97453293 ATAATATAAAAATAT
1 ATAATTTAAAAATAT
97453308 ATAATTTAAAAATA-
1 ATAATTTAAAAATAT
*
97453322 ATTAATTATAATAATAT
1 A-TAATT-TAAAAATAT
97453339 AT
1 AT
97453341 GAAATATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 1 0.04
15 18 0.64
16 8 0.29
17 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAATTTAAAAATAT
Found at i:97455090 original size:9 final size:9
Alignment explanation
Indices: 97455033--97455092 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
97455023 AATCAATATG
97455033 AATTAAATT
1 AATTAAATT
*
97455042 AA-AAAATT
1 AATTAAATT
*
97455050 GATTAAACTGAT
1 AATTAAA-T--T
*
97455062 AATTAAATC
1 AATTAAATT
97455071 AATTAAATT
1 AATTAAATT
*
97455080 AATTAATTT
1 AATTAAATT
97455089 AATT
1 AATT
97455093 TTTAATATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
8 6 0.15
9 25 0.62
10 1 0.03
11 1 0.03
12 7 0.17
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (9 bp):
AATTAAATT
Found at i:97457395 original size:50 final size:51
Alignment explanation
Indices: 97457261--97457397 Score: 170
Period size: 50 Copynumber: 2.7 Consensus size: 51
97457251 TGATATAATG
* *
97457261 ATAAATTTAGCCTTTAAAATTTACACATTCTATCAATTTGATTTTCAATTA
1 ATAAATTTAGCCTTCAAAATTTACACATTCTATCAATTTGATATTCAATTA
* * * *
97457312 ATAAATTTAG-CTTGCAACATTTACACATCCTATCAA-TTGATATTGATTTA
1 ATAAATTTAGCCTT-CAAAATTTACACATTCTATCAATTTGATATTCAATTA
* * *
97457362 ATAAATTTAGCCTTCAATATTTATACTTTCTATCAA
1 ATAAATTTAGCCTTCAAAATTTACACATTCTATCAA
97457398 CATTTATACA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
50 42 0.57
51 32 0.43
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.43
Consensus pattern (51 bp):
ATAAATTTAGCCTTCAAAATTTACACATTCTATCAATTTGATATTCAATTA
Found at i:97462669 original size:51 final size:51
Alignment explanation
Indices: 97462593--97462696 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
97462583 CTACAGAGGT
97462593 TGCAGATTATGTAGTTGGGGGTGTGATGCCTTGTGACAGCTCTCGTTTCTA
1 TGCAGATTATGTAGTTGGGGGTGTGATGCCTTGTGACAGCTCTCGTTTCTA
97462644 TGCAGATTATGTAGTTGGGGGTGTGATGCCTTGTGACAGCTCTCGTTTCTA
1 TGCAGATTATGTAGTTGGGGGTGTGATGCCTTGTGACAGCTCTCGTTTCTA
97462695 TG
1 TG
97462697 TTATTATAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.15, C:0.15, G:0.32, T:0.38
Consensus pattern (51 bp):
TGCAGATTATGTAGTTGGGGGTGTGATGCCTTGTGACAGCTCTCGTTTCTA
Found at i:97463902 original size:18 final size:19
Alignment explanation
Indices: 97463879--97463935 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
97463869 ACTGTTTTTA
97463879 TTGTTGTT-TTTTACTATT
1 TTGTTGTTATTTTACTATT
*
97463897 TTGTTGTTATTTTATTATT
1 TTGTTGTTATTTTACTATT
*
97463916 ATT-TT-TTA-TTTATTATT
1 -TTGTTGTTATTTTACTATT
97463933 TTG
1 TTG
97463936 CTACAATTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
16 2 0.06
17 9 0.26
18 11 0.31
19 11 0.31
20 2 0.06
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.74
Consensus pattern (19 bp):
TTGTTGTTATTTTACTATT
Found at i:97463975 original size:22 final size:22
Alignment explanation
Indices: 97463915--97463975 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
97463905 ATTTTATTAT
*
97463915 TATT-TTTTATTTATTATTTTGC
1 TATTATTTTA-TTATTATGTTGC
** *
97463937 TACAATTTCATTATTATGTTGC
1 TATTATTTTATTATTATGTTGC
*
97463959 TATTATTTTATTCTTAT
1 TATTATTTTATTATTAT
97463976 TATTTAGATA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (22 bp):
TATTATTTTATTATTATGTTGC
Found at i:97464430 original size:16 final size:18
Alignment explanation
Indices: 97464395--97464431 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
97464385 GAAACTTTTA
*
97464395 TTTTAATGTTTTTAATAT
1 TTTTAATGTTATTAATAT
97464413 TTTTAATG-TATT-ATAT
1 TTTTAATGTTATTAATAT
97464429 TTT
1 TTT
97464432 AAAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATGTTATTAATAT
Found at i:97464764 original size:37 final size:37
Alignment explanation
Indices: 97464717--97464798 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
97464707 AAATTTAGAA
* *
97464717 TTTAGTTTCTATACTTTCATTTTCAAGAATTTAATTT
1 TTTACTTTCTATACTTTCATTTTCAAGAATTAAATTT
97464754 TTTACTTTCTATACTTTCATTTTCAAGAATTAAATTT
1 TTTACTTTCTATACTTTCATTTTCAAGAATTAAATTT
*
97464791 TCTACTTT
1 TTTACTTT
97464799 TTTTAAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (37 bp):
TTTACTTTCTATACTTTCATTTTCAAGAATTAAATTT
Found at i:97467110 original size:19 final size:19
Alignment explanation
Indices: 97467086--97467123 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97467076 AATGTAACAT
97467086 GTTAAAAAATGACTACTGC
1 GTTAAAAAATGACTACTGC
*
97467105 GTTAAAAAATTACTACTGC
1 GTTAAAAAATGACTACTGC
97467124 AAAACAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (19 bp):
GTTAAAAAATGACTACTGC
Found at i:97471301 original size:16 final size:16
Alignment explanation
Indices: 97471280--97471316 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
97471270 AACCCTAAAT
97471280 TTTCCTTTTCTT-TTTC
1 TTTCCTTTT-TTCTTTC
97471296 TTTCCTTTTTTCTTTC
1 TTTCCTTTTTTCTTTC
97471312 TTTCC
1 TTTCC
97471317 CTGCTCTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCCTTTTTTCTTTC
Found at i:97471350 original size:9 final size:9
Alignment explanation
Indices: 97471336--97471376 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
97471326 TTTGTTTTCA
97471336 TTATTTCTT
1 TTATTTCTT
97471345 TTATTTCTT
1 TTATTTCTT
*
97471354 TCT-TTTATT
1 T-TATTTCTT
97471363 TTATTT-TT
1 TTATTTCTT
97471371 TTATTT
1 TTATTT
97471377 AATTACTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 9 0.31
9 19 0.66
10 1 0.03
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (9 bp):
TTATTTCTT
Found at i:97471355 original size:13 final size:12
Alignment explanation
Indices: 97471325--97471376 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
97471315 CCCTGCTCTG
*
97471325 TTTTGTTTTCATT
1 TTTTCTTTT-ATT
*
97471338 ATTTCTTTTATT
1 TTTTCTTTTATT
97471350 TCTTTCTTTTATT
1 T-TTTCTTTTATT
*
97471363 TTATTTTTTTATT
1 TT-TTCTTTTATT
97471376 T
1 T
97471377 AATTACTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 4 0.12
13 29 0.88
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTATT
Found at i:97473932 original size:43 final size:44
Alignment explanation
Indices: 97473879--97473965 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
97473869 CATAGGGTTC
* * * *
97473879 CGATATGTGATTT-CGTGTAGGATCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTTACATGTAAGACCACATCTGGGACGTTGGCAT
*
97473922 CGATTTGTGATTTACATGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATGTGATTTACATGTAAGACCACATCTGGGACGTTGGCAT
97473966 TGTACGAGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
43 12 0.32
44 26 0.68
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (44 bp):
CGATATGTGATTTACATGTAAGACCACATCTGGGACGTTGGCAT
Found at i:97474588 original size:29 final size:29
Alignment explanation
Indices: 97474555--97474641 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
97474545 ATTTGGCTAT
97474555 ATGGTTTGGCTTGATTATTAAGTTAGTTG
1 ATGGTTTGGCTTGATTATTAAGTTAGTTG
* *
97474584 ATGGTTTTGG-TT-A-T-TT-GGCTA--T-
1 ATGG-TTTGGCTTGATTATTAAGTTAGTTG
97474606 ATGGTTTGGCTTGATTATTAAGTTAGTTG
1 ATGGTTTGGCTTGATTATTAAGTTAGTTG
97474635 ATGGTTT
1 ATGGTTT
97474642 AGTAATTTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
21 5 0.11
22 6 0.13
23 2 0.04
24 1 0.02
25 5 0.11
26 5 0.11
27 1 0.02
28 2 0.04
29 13 0.29
30 5 0.11
ACGTcount: A:0.18, C:0.03, G:0.28, T:0.51
Consensus pattern (29 bp):
ATGGTTTGGCTTGATTATTAAGTTAGTTG
Found at i:97474616 original size:51 final size:51
Alignment explanation
Indices: 97474540--97474641 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
97474530 CATGCGAAAA
97474540 TGGTTATTTGGCTATATGGTTTGGCTTGATTATTAAGTTAGTTGATGGTTT
1 TGGTTATTTGGCTATATGGTTTGGCTTGATTATTAAGTTAGTTGATGGTTT
97474591 TGGTTATTTGGCTATATGGTTTGGCTTGATTATTAAGTTAGTTGATGGTTT
1 TGGTTATTTGGCTATATGGTTTGGCTTGATTATTAAGTTAGTTGATGGTTT
97474642 AGTAATTTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.18, C:0.04, G:0.27, T:0.51
Consensus pattern (51 bp):
TGGTTATTTGGCTATATGGTTTGGCTTGATTATTAAGTTAGTTGATGGTTT
Found at i:97474992 original size:13 final size:13
Alignment explanation
Indices: 97474976--97475000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97474966 ATATGCTTCA
97474976 TGATTGTTTTGGC
1 TGATTGTTTTGGC
97474989 TGATTGTTTTGG
1 TGATTGTTTTGG
97475001 TATGGATCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.04, G:0.32, T:0.56
Consensus pattern (13 bp):
TGATTGTTTTGGC
Found at i:97478851 original size:16 final size:16
Alignment explanation
Indices: 97478830--97478861 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97478820 CATATTACAA
97478830 TATATCACATACATAG
1 TATATCACATACATAG
97478846 TATATCACATACATAG
1 TATATCACATACATAG
97478862 CTTACACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
TATATCACATACATAG
Found at i:97480753 original size:41 final size:41
Alignment explanation
Indices: 97480671--97480765 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
97480661 TTGTGTCTGA
* * *
97480671 TTGGGCTGAGGCCCTAATATATTCCTGACTCTGTATATGAG
1 TTGGGCTAAGGCCCTAATATATTCCTAACTCTATATATGAG
* * *
97480712 TTGGGCTAAGGCCCTAATTTATAT-CTAATTCTATATTTGAG
1 TTGGGCTAAGGCCCTAATATAT-TCCTAACTCTATATATGAG
*
97480753 -TGGGCTATGGCCC
1 TTGGGCTAAGGCCC
97480766 ACACTGATTC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
40 12 0.26
41 33 0.72
42 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (41 bp):
TTGGGCTAAGGCCCTAATATATTCCTAACTCTATATATGAG
Found at i:97489815 original size:21 final size:21
Alignment explanation
Indices: 97489773--97489817 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
97489763 TTTCACGAGA
*
97489773 TAAACAAAAATCTTACTAAAC
1 TAAACAAAAATCTTACCAAAC
*
97489794 TAAACAAAAATCTTACCGAAC
1 TAAACAAAAATCTTACCAAAC
97489815 TAA
1 TAA
97489818 CTATATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAACAAAAATCTTACCAAAC
Found at i:97492819 original size:16 final size:16
Alignment explanation
Indices: 97492783--97492813 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
97492773 ATTTTATTTT
97492783 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
97492799 AATAA-AAATTTTAAA
1 AATAATAAATTTTAAA
97492814 TCATAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:97493793 original size:31 final size:31
Alignment explanation
Indices: 97493736--97493795 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
97493726 AAAATTTCAA
** *
97493736 AATTCAAAAAATATAGGTATTCAAATTGACC
1 AATTCAAAAAATATAGAAATTAAAATTGACC
*
97493767 AATTTAAAAAATATAGAAATTAAAATTGA
1 AATTCAAAAAATATAGAAATTAAAATTGA
97493796 TCAAATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30
Consensus pattern (31 bp):
AATTCAAAAAATATAGAAATTAAAATTGACC
Found at i:97510071 original size:16 final size:15
Alignment explanation
Indices: 97510037--97510071 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
97510027 AACCCTAAAT
*
97510037 TTTCCCTTTTTTTTG
1 TTTCCCTTTTTTTTA
97510052 TTTCCCTTTTTCTTTA
1 TTTCCCTTTTT-TTTA
97510068 TTTC
1 TTTC
97510072 TTTCCCTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.03, C:0.23, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTCCCTTTTTTTTA
Found at i:97515589 original size:22 final size:22
Alignment explanation
Indices: 97515561--97515610 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
97515551 GAATAGTACC
* *
97515561 ACACGCCCATGTGGCTGGTGTG
1 ACACGCCCATATGGCTGATGTG
*
97515583 ACACGCCCGTATGGCTGATGTG
1 ACACGCCCATATGGCTGATGTG
97515605 ACACGC
1 ACACGC
97515611 TCGTGTCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (22 bp):
ACACGCCCATATGGCTGATGTG
Found at i:97517619 original size:17 final size:18
Alignment explanation
Indices: 97517598--97517640 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
97517588 ATATAATATA
97517598 ATATAATATAATTTACTT
1 ATATAATATAATTTACTT
* *
97517616 -TATATTATTATTTACTT
1 ATATAATATAATTTACTT
97517633 ATATAATA
1 ATATAATA
97517641 AGTAAATACA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
ATATAATATAATTTACTT
Found at i:97517838 original size:19 final size:20
Alignment explanation
Indices: 97517804--97517841 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
97517794 AGTCCTTTCA
97517804 CTAAATTAACCTTAATTAAG
1 CTAAATTAACCTTAATTAAG
*
97517824 CTAAATTTA-CTTAATTAA
1 CTAAATTAACCTTAATTAA
97517842 AATCTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
CTAAATTAACCTTAATTAAG
Found at i:97525190 original size:93 final size:93
Alignment explanation
Indices: 97525078--97525249 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97525068 GCCCATAAGT
* *
97525078 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97525143 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97525171 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97525236 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
97525250 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97525245 original size:46 final size:46
Alignment explanation
Indices: 97525070--97525245 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
97525060 TGTAACCCGC
* * *
97525070 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97525116 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97525166 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
97525209 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97525246 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97527666 original size:30 final size:30
Alignment explanation
Indices: 97527622--97527710 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
97527612 CAAAGATAAC
97527622 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
97527651 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
97527681 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
97527711 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:97527670 original size:15 final size:15
Alignment explanation
Indices: 97527622--97527701 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
97527612 CAAAGATAAC
*
97527622 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
97527636 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
97527651 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
97527666 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
97527681 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
97527696 AAGAAA
1 AAGAAA
97527702 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:97527710 original size:15 final size:15
Alignment explanation
Indices: 97527633--97527710 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
97527623 AGAAAACCGA
97527633 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
97527648 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
97527662 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
97527677 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97527693 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97527708 ATA
1 ATA
97527711 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97530771 original size:93 final size:93
Alignment explanation
Indices: 97530659--97530830 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97530649 GCCCATAAGT
* *
97530659 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97530724 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97530752 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97530817 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
97530831 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97530826 original size:46 final size:46
Alignment explanation
Indices: 97530651--97530826 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
97530641 TGTAACCCGC
* * *
97530651 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
97530697 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
97530747 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
97530790 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97530827 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:97532606 original size:15 final size:16
Alignment explanation
Indices: 97532586--97532615 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97532576 TATTTAAATT
97532586 TTAAAATT-ATTATTG
1 TTAAAATTCATTATTG
97532601 TTAAAATTCATTATT
1 TTAAAATTCATTATT
97532616 AAAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
TTAAAATTCATTATTG
Found at i:97541793 original size:26 final size:24
Alignment explanation
Indices: 97541763--97541812 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
97541753 AAATAAAAAA
*
97541763 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
97541789 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
97541813 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:97541832 original size:21 final size:21
Alignment explanation
Indices: 97541783--97541841 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
97541773 ATAATAAATC
*
97541783 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
97541803 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
97541825 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
97541842 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:97542695 original size:24 final size:21
Alignment explanation
Indices: 97542642--97542695 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 21
97542632 CTTTTTTAAA
*
97542642 ATTATAAAATAATAATATTTT
1 ATTATTAAATAATAATATTTT
97542663 ATTTAATTAAATAAATAATTATTATT
1 A-TT-ATTAAAT-AATAA-TATT-TT
97542689 ATTATTA
1 ATTATTA
97542696 TAATGCGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 1 0.04
22 2 0.07
23 6 0.22
24 9 0.33
25 6 0.22
26 3 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTAAATAATAATATTTT
Found at i:97544991 original size:74 final size:75
Alignment explanation
Indices: 97544843--97545008 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
97544833 GAAAAGTGTG
** *
97544843 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
97544903 CTGAGCTGTG
66 CCGAGCTGAA
97544913 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
97544976 ACCGAGTTGAA
65 ACCGAGCTGAA
97544987 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
97545009 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:97545006 original size:35 final size:35
Alignment explanation
Indices: 97544843--97545006 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
97544833 GAAAAGTGTG
* **
97544843 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
97544878 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
97544913 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
97544952 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
97544987 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
97545007 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:97552476 original size:74 final size:75
Alignment explanation
Indices: 97552328--97552493 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
97552318 GCAAAGTGTG
** *
97552328 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
97552388 CTGAGCTGTG
66 CCGAGCTGAA
97552398 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
97552461 ACCGAGTTGAA
65 ACCGAGCTGAA
97552472 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
97552494 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:97552491 original size:35 final size:35
Alignment explanation
Indices: 97552328--97552491 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
97552318 GCAAAGTGTG
* **
97552328 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
97552363 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
97552398 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
97552437 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
97552472 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
97552492 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:97553799 original size:31 final size:30
Alignment explanation
Indices: 97553764--97553828 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
97553754 CCCAATAACT
* *
97553764 TAAATAAAAATTTTTAAATAGTTTAATGAC
1 TAAATAAAAAATTTTAAATAATTTAATGAC
*
97553794 GTAAATAAAAAATTTTGAATAATTTAATGAC
1 -TAAATAAAAAATTTTAAATAATTTAATGAC
97553825 TAAA
1 TAAA
97553829 CTGTAATTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (30 bp):
TAAATAAAAAATTTTAAATAATTTAATGAC
Found at i:97555508 original size:22 final size:22
Alignment explanation
Indices: 97555461--97555518 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
97555451 TTATATTTCT
* **
97555461 TTTTCATTCAATTTCATCCATC
1 TTTTCTTTCAATTTCAAACATC
97555483 TTTTCTTTCAATTTCAAAC-TC
1 TTTTCTTTCAATTTCAAACATC
97555504 ATTTTCTCTT-AATTT
1 -TTTTCT-TTCAATTT
97555519 TCCATCTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTCTTTCAATTTCAAACATC
Found at i:97556492 original size:40 final size:40
Alignment explanation
Indices: 97556371--97556505 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
97556361 GATTTCAAGT
* *
97556371 CGATGAGACACTGGGTGTCAATTTACTACTTTGGATTAATT
1 CGATGAGACACTGGGTGTCAAATTACTACTTTGGATT-ATC
* * * * *
97556412 CGATGAGGCACTGGGTG-CCAATT--TACTTCGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTACTACTTTGGATTATC
*
97556449 CGATGAGACACTGGGTGTCAAATTACTACTTTGAATTATC
1 CGATGAGACACTGGGTGTCAAATTACTACTTTGGATTATC
*
97556489 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
97556506 CCAGATTGGT
Statistics
Matches: 77, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 17 0.22
38 14 0.18
40 30 0.39
41 16 0.21
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTACTACTTTGGATTATC
Found at i:97561590 original size:27 final size:27
Alignment explanation
Indices: 97561560--97561612 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
97561550 GTGGGAGTAA
97561560 GTTCTATATTTGGTTTTATATGTTAAG
1 GTTCTATATTTGGTTTTATATGTTAAG
97561587 GTTCTATATTTGGTTTTATATGTTAA
1 GTTCTATATTTGGTTTTATATGTTAA
97561613 TGGCATATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.04, G:0.17, T:0.57
Consensus pattern (27 bp):
GTTCTATATTTGGTTTTATATGTTAAG
Found at i:97561606 original size:12 final size:12
Alignment explanation
Indices: 97561564--97561607 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
97561554 GAGTAAGTTC
97561564 TATATTTGGTTT
1 TATATTTGGTTT
*
97561576 TATATGTTAAGGTTC
1 TATAT-TT--GGTTT
97561591 TATATTTGGTTT
1 TATATTTGGTTT
97561603 TATAT
1 TATAT
97561608 GTTAATGGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 14 0.52
13 2 0.07
14 2 0.07
15 9 0.33
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.59
Consensus pattern (12 bp):
TATATTTGGTTT
Found at i:97564027 original size:4 final size:4
Alignment explanation
Indices: 97564018--97564043 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
97564008 GTAATGATAT
97564018 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
97564044 GTGTGGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:97568527 original size:25 final size:25
Alignment explanation
Indices: 97568489--97568536 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97568479 GGACACACCA
** *
97568489 CAGCTCGTTTGAGCTTACCGATTTG
1 CAGCTCGTGAGAGCATACCGATTTG
97568514 CAGCTCGTGAGAGCATACCGATT
1 CAGCTCGTGAGAGCATACCGATT
97568537 CATAACTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (25 bp):
CAGCTCGTGAGAGCATACCGATTTG
Found at i:97570848 original size:18 final size:18
Alignment explanation
Indices: 97570817--97570857 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
97570807 GAATTAGAAT
*
97570817 ATTAATTAAACTAATTAA
1 ATTAAGTAAACTAATTAA
* *
97570835 ATTAAGTAACCTAATTTA
1 ATTAAGTAAACTAATTAA
97570853 ATTAA
1 ATTAA
97570858 CCTAATGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (18 bp):
ATTAAGTAAACTAATTAA
Found at i:97573937 original size:7 final size:8
Alignment explanation
Indices: 97573923--97573965 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
97573913 AAAAAACAAT
97573923 TAAAAAAA
1 TAAAAAAA
97573931 TAAAAAAA
1 TAAAAAAA
97573939 TAAAAAACGA
1 TAAAAAA--A
*
97573949 TTTAAAAAA
1 -TAAAAAAA
97573958 TAAAAAAA
1 TAAAAAAA
97573966 ATGGAAAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 22 0.73
9 1 0.03
10 1 0.03
11 6 0.20
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:97573973 original size:28 final size:27
Alignment explanation
Indices: 97573913--97573965 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
97573903 AGAGTGAGAA
97573913 AAAAAACAATTAAAAAAATAAAAAAAT
1 AAAAAACAATTAAAAAAATAAAAAAAT
* *
97573940 AAAAAACGATTTAAAAAATAAAAAAA
1 AAAAAACAATTAAAAAAATAAAAAAA
97573966 ATGGAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (27 bp):
AAAAAACAATTAAAAAAATAAAAAAAT
Found at i:97573974 original size:19 final size:17
Alignment explanation
Indices: 97573914--97573967 Score: 54
Period size: 19 Copynumber: 3.0 Consensus size: 17
97573904 GAGTGAGAAA
*
97573914 AAAAACAATTAAAAAAAT
1 AAAAA-AATAAAAAAAAT
*
97573932 AAAAAAATAAAAAACGATT
1 AAAAAAATAAAAAA--AAT
*
97573951 TAAAAAATAAAAAAAAT
1 AAAAAAATAAAAAAAAT
97573968 GGAAAAACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 10 0.33
18 5 0.17
19 15 0.50
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAT
Found at i:97574779 original size:15 final size:16
Alignment explanation
Indices: 97574759--97574791 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
97574749 TATATTTATT
97574759 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
97574774 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
97574791 T
1 T
97574792 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:97574863 original size:20 final size:21
Alignment explanation
Indices: 97574838--97574884 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
97574828 GTTTTAAGAA
*
97574838 TTGTTTTAGTA-TTATTTTAT
1 TTGTTTTAATATTTATTTTAT
97574858 TTGTTTTAATATTTATTTT-T
1 TTGTTTTAATATTTATTTTAT
*
97574878 ATGTTTT
1 TTGTTTT
97574885 TAAATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (21 bp):
TTGTTTTAATATTTATTTTAT
Found at i:97574912 original size:26 final size:24
Alignment explanation
Indices: 97574866--97574925 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
97574856 ATTTGTTTTA
*
97574866 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
97574890 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
97574916 TTTTTTATTT
1 ATATTTATTT
97574926 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:97575318 original size:19 final size:19
Alignment explanation
Indices: 97575294--97575341 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
97575284 TTAGAAATAA
* *
97575294 GTTTTAAGATTATATTTTT
1 GTTTTAAGATTAGATTTGT
*
97575313 GTTTTAAAAATTAGATTTGT
1 GTTTT-AAGATTAGATTTGT
97575333 G-TTTAAGAT
1 GTTTTAAGAT
97575342 ACATGGATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 4 0.17
19 8 0.33
20 12 0.50
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (19 bp):
GTTTTAAGATTAGATTTGT
Found at i:97575599 original size:47 final size:47
Alignment explanation
Indices: 97575509--97575600 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
97575499 GGGAATGAGT
* **
97575509 TGTTTGTATTTATATATTTTTAATAAAGATACATGGATATTAGTTTA
1 TGTTTATATTTATATATTTTTAATAAAGATACATAAATATTAGTTTA
* *
97575556 TGTTTATATTTATATATTTTTAATAAAGATACTTAAATTTTAGTT
1 TGTTTATATTTATATATTTTTAATAAAGATACATAAATATTAGTT
97575601 GAAAAATATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (47 bp):
TGTTTATATTTATATATTTTTAATAAAGATACATAAATATTAGTTTA
Found at i:97581392 original size:39 final size:39
Alignment explanation
Indices: 97581338--97581416 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
97581328 GTTAGCATTT
* * * *
97581338 ATTTTTTTATTTTTTTATACTTTTT-TAATTGTAAAAATA
1 ATTTTTTGAATTTTTTA-AATTTTTAAAATTGTAAAAATA
*
97581377 ATTTTTTGAATTTTTTAAATTTTTAAAATTTTAAAAATA
1 ATTTTTTGAATTTTTTAAATTTTTAAAATTGTAAAAATA
97581416 A
1 A
97581417 AGTAAATACT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 6 0.18
39 28 0.82
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (39 bp):
ATTTTTTGAATTTTTTAAATTTTTAAAATTGTAAAAATA
Found at i:97589651 original size:22 final size:22
Alignment explanation
Indices: 97589626--97589676 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
97589616 AGATATAATC
97589626 AAAACATATA-ATAAAATTATTA
1 AAAACATATATATAAAATTA-TA
* **
97589648 AAAAAAT-TATATTTAATTATA
1 AAAACATATATATAAAATTATA
97589669 AAAACATA
1 AAAACATA
97589677 AAATTACGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAACATATATATAAAATTATA
Found at i:97595643 original size:18 final size:20
Alignment explanation
Indices: 97595607--97595648 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
97595597 TTAATTAGTC
97595607 AAAATACTTTATTGCAA-TT
1 AAAATACTTTATTGCAATTT
97595626 AAAATA-TTTATGTG-AATTT
1 AAAATACTTTAT-TGCAATTT
97595645 AAAA
1 AAAA
97595649 ATTATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (20 bp):
AAAATACTTTATTGCAATTT
Found at i:97602928 original size:22 final size:22
Alignment explanation
Indices: 97602891--97602933 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
97602881 AGTAAATTAT
*
97602891 TTTATTATATTTATATTATAAG
1 TTTATTATATTTATATCATAAG
97602913 TTTA-TATATTTCATATCATAA
1 TTTATTATATTT-ATATCATAA
97602934 TACTAATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTATTATATTTATATCATAAG
Found at i:97604429 original size:21 final size:21
Alignment explanation
Indices: 97604368--97604435 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
97604358 TTACTTTTAA
*
97604368 AAATTTTTAAATATATATTTA
1 AAATTTTTAAATATATATTTT
* *
97604389 AAATATTT-AATATATTTTTT
1 AAATTTTTAAATATATATTTT
*
97604409 TAATTTTTAAATATATATTTT
1 AAATTTTTAAATATATATTTT
97604430 GAAATT
1 -AAATT
97604436 ACTTTTTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 16 0.42
21 18 0.47
22 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
AAATTTTTAAATATATATTTT
Found at i:97604459 original size:22 final size:21
Alignment explanation
Indices: 97604425--97604479 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
97604415 TTAAATATAT
*
97604425 ATTTTGAA-ATTACTTTTTTAA
1 ATTTTAAATATTACTTTTTT-A
97604446 ATTTTAAATATTACTTTTTTA
1 ATTTTAAATATTACTTTTTTA
*
97604467 GTATTTAAATATT
1 AT-TTTAAATATT
97604480 TTAAATTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 9 0.30
22 21 0.70
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (21 bp):
ATTTTAAATATTACTTTTTTA
Found at i:97604542 original size:31 final size:30
Alignment explanation
Indices: 97604438--97604544 Score: 91
Period size: 31 Copynumber: 3.6 Consensus size: 30
97604428 TTGAAATTAC
*
97604438 TTTTTTAA-ATTTTAAATATTACTTT-TTTAG
1 TTTTATAATATTTTAAATATTA-TTTATTT-G
* *
97604468 TATTTA-AATATTTTAAAT-TT-GTTATTAG
1 T-TTTATAATATTTTAAATATTATTTATTTG
*
97604496 TTTTACAAT-TGTTTAAATATTATTTAATTTG
1 TTTTATAATAT-TTTAAATATTATTT-ATTTG
97604527 TTTTATAATATTTTAAAT
1 TTTTATAATATTTTAAAT
97604545 TATAATTTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
27 5 0.08
28 14 0.23
29 4 0.06
30 7 0.11
31 31 0.50
32 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.60
Consensus pattern (30 bp):
TTTTATAATATTTTAAATATTATTTATTTG
Found at i:97604554 original size:14 final size:15
Alignment explanation
Indices: 97604529--97604561 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
97604519 TTAATTTGTT
97604529 TTATAATATTTTAAA
1 TTATAATATTTTAAA
97604544 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
97604558 TTAT
1 TTAT
97604562 TTTTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:97604659 original size:35 final size:35
Alignment explanation
Indices: 97604620--97604689 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
97604610 TAATTATCAA
*
97604620 AATGACCCATTTTTTTAATTTGGCTCCACCGACTT
1 AATGACCCATTTTTTTAATTTGGCTCCACCAACTT
97604655 AATGACCCATTTTTTTAATTTGGCTCCACCAACTT
1 AATGACCCATTTTTTTAATTTGGCTCCACCAACTT
97604690 TTACTGTAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (35 bp):
AATGACCCATTTTTTTAATTTGGCTCCACCAACTT
Found at i:97605238 original size:21 final size:22
Alignment explanation
Indices: 97605212--97605265 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
97605202 GAAAGTTTAA
97605212 AATATTT-AAATATTAAAAAA-T
1 AATATTTAAAAT-TTAAAAAAGT
97605233 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTTAAAAAAGT
*
97605255 AAT-TTCAAAAT
1 AATATTTAAAAT
97605266 ATATATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 22 0.73
22 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAGT
Found at i:97605770 original size:22 final size:22
Alignment explanation
Indices: 97605742--97605794 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
97605732 CTGTACTTTT
97605742 ATTTTATTATTA-TTTTTGAATA
1 ATTTTATTATTAGTTTTT-AATA
*
97605764 ATTTTATTA-TAGTTTTTAATC
1 ATTTTATTATTAGTTTTTAATA
*
97605785 ATTTTTTTAT
1 ATTTTATTAT
97605795 ATAATGATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (22 bp):
ATTTTATTATTAGTTTTTAATA
Found at i:97605788 original size:21 final size:21
Alignment explanation
Indices: 97605742--97605796 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
97605732 CTGTACTTTT
97605742 ATTTTATTATTATTTTTGAATA
1 ATTTTATTA-TATTTTTGAATA
*
97605764 ATTTTATTATAGTTTTT-AATC
1 ATTTTATTATA-TTTTTGAATA
*
97605785 ATTTTTTTATAT
1 ATTTTATTATAT
97605797 AATGATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 15 0.50
22 14 0.47
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (21 bp):
ATTTTATTATATTTTTGAATA
Found at i:97606429 original size:30 final size:31
Alignment explanation
Indices: 97606373--97606431 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
97606363 AAAATTTCAA
*
97606373 AATTCAAAAAGTACATGAACTAAAATTGACC
1 AATTCAAAAAATACATGAACTAAAATTGACC
* *
97606404 AATTCAAAAAATACA-GGATTAAAATTGA
1 AATTCAAAAAATACATGAACTAAAATTGA
97606432 TCAAATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24
Consensus pattern (31 bp):
AATTCAAAAAATACATGAACTAAAATTGACC
Found at i:97614813 original size:3 final size:3
Alignment explanation
Indices: 97614805--97614845 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
97614795 AAAAAGTGCT
97614805 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97614846 TGTGATTTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97620088 original size:18 final size:18
Alignment explanation
Indices: 97620040--97620094 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
97620030 AACATTATTA
*
97620040 TTAC-TATTAGTATTATAT
1 TTACTTATTATTATT-TAT
97620058 TT-CTT-TTATTTATTTAT
1 TTACTTATTA-TTATTTAT
97620075 TTACTTATTATTATTT-T
1 TTACTTATTATTATTTAT
97620092 TTA
1 TTA
97620095 AATACACTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
17 13 0.41
18 16 0.50
19 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
TTACTTATTATTATTTAT
Found at i:97620191 original size:3 final size:3
Alignment explanation
Indices: 97620169--97620218 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
97620159 TTAGGTATTC
* * * *
97620169 TAT TAGT TAC TAT CAT TAT TAT TAA TAT TAT TAT CAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97620215 TAT T
1 TAT T
97620219 TTTAAACTGT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:97632255 original size:96 final size:95
Alignment explanation
Indices: 97631989--97632414 Score: 359
Period size: 96 Copynumber: 4.5 Consensus size: 95
97631979 TTGTTATGGC
* * * *
97631989 AAATCTTATCTCTCTAAAGTTGCAGTGGAGTAGATTAAAGC--C--A---CAAACCTTATCTTCC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATTGCAAACCTTATCTCCC
* * *
97632047 TGAAGTTGTAGTGGAGCAGG-TAAAAGATAGA
66 TGAAGTTGCAGTAGAGAAGGTTAAAA-ATA-A
* * ** * * *
97632078 AAATCTTATTTCCCTAAGGTTGTTGTGGAACAGATTAAAGCTATCGAAGTT-CAAACCTTATCTC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTA-C-AAATTGCAAACCTTATCTC
* *
97632142 CCTGAAGTTACAGTAGAGAAGGTTAAAAATCAC
64 CCTGAAGTTGCAGTAGAGAAGGTTAAAAAT-AA
* * * ** *
97632175 AAATCTAAACTCCCTGAAGTTGCAACAGAGCAGATTAAAGCTACAAATTGCAAATCTTATCTCCC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATTGCAAACCTTATCTCCC
* * ** * *
97632240 TAAAGTTGCAGTAGAGCAGACTGAAAATAGT
66 TGAAGTTGCAGTAGAGAAGGTTAAAAATA-A
* * * * * * *
97632271 GAATCTTATTTTCCTAAAGTTGCAGTAGATCAAAATAAAGCTACAAATTGCAAACCTTATCTCCT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATTGCAAACCTTATCTCCC
*
97632336 TGAAGTTGCAGTGGAGCAA-GTTAAAAATAAA
66 TGAAGTTGCAGTAGAG-AAGGTTAAAAAT-AA
* * *
97632367 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGTTACAAAT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAAT
97632415 CTCATACCCC
Statistics
Matches: 260, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
89 34 0.13
92 1 0.00
95 5 0.02
96 148 0.57
97 66 0.25
98 6 0.02
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (95 bp):
AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTACAAATTGCAAACCTTATCTCCC
TGAAGTTGCAGTAGAGAAGGTTAAAAATAA
Found at i:97632405 original size:45 final size:45
Alignment explanation
Indices: 97632129--97632720 Score: 254
Period size: 44 Copynumber: 12.9 Consensus size: 45
97632119 TATCGAAGTT
* * * * * * *
97632129 CAAACCTTATCTCCCTGAAGTTACAGTAGAGAAGGTTAAAAATCA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* * * ***
97632174 CAAATCTAAACTCCCTGAAGTTGCAACAGAGCAGATTAAAGCTACA-AA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA---A-ATAA
* * * *
97632222 TTGCAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAAATAG
1 ---CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
** * * * * * *
97632270 TGAATCTTATTTTCCTAAAGTTGCAGTAGATCAAAATAAAGCTACA-AA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA---A-ATAA
* * *
97632318 TTGCAAACCTTATCTCCTTGAAGTTGCAGTGGAGCA-AGTTAAAAATAA
1 ---CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TTAAAAATAA
* * * *
97632366 AAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATT-AAAGTTA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* * * **
97632410 CAAATCTCATAC-CCCTAAAGTTTGCAATGG-G-ATGGATTGAAGTTATTATGG
1 CAAATCTTAT-CTCCCTAAAG-TTGCAGTGGAGCA--GATT-AA---A-AATAA
* * ** *
97632461 C-AATCTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACT-A
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* * * * * *
97632504 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATT-GAAGTCA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* * * * *
97632548 CGAATCTTATCTCCCTAAAGTTACAGTGAAGCAGATTAAAGATAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* ** * * * *
97632593 CAAACCTTATCTCTTTAAAGTTGCAGTAGAGCAGGTT-GAAATTA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* * * * * * * *
97632637 CAAGTCTTATCTCCTTGAAGTTGCAATAGAGCAGACTGAAAATAT
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
* *
97632682 C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA
97632721 GTGACAAATC
Statistics
Matches: 408, Mismatches: 104, Indels: 71
0.70 0.18 0.12
Matches are distributed among these distances:
43 5 0.01
44 151 0.37
45 144 0.35
46 1 0.00
47 3 0.01
48 11 0.03
49 12 0.03
50 17 0.04
51 64 0.16
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (45 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATAA
Found at i:97632525 original size:44 final size:43
Alignment explanation
Indices: 97632462--97632753 Score: 259
Period size: 44 Copynumber: 6.6 Consensus size: 43
97632452 TTATTATGGC
* * *
97632462 AATCTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACTACA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAA-TACA
* * *
97632506 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTCACG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAAT-ACA
* * *
97632550 AATCTTATCTCCCTAAAGTTACAGT-GAAGCAGATTAAAGATAGCA
1 AATCTTATCTCTCTGAAGTTGCAGTAG-AGCAGATTAAA-ATA-CA
* * * * *
97632595 AACCTTATCTCTTTAAAGTTGCAGTAGAGCAGGTTGAAATTACA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATT-AAAATACA
* * *
97632639 AGTCTTATCTC-CTTGAAGTTGCAATAGAGCAGACTGAAAATATC-
1 AATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGA-TTAAAATA-CA
* * * *
97632683 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGACA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAAT-ACA
*
97632727 AATCCTATAC-CTCTGAAGTTGCAGTAG
1 AATCTTAT-CTCTCTGAAGTTGCAGTAG
97632754 GTCGGATTAA
Statistics
Matches: 200, Mismatches: 35, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
43 8 0.04
44 152 0.76
45 36 0.18
46 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAATACA
Found at i:97632632 original size:89 final size:87
Alignment explanation
Indices: 97632461--97632717 Score: 254
Period size: 89 Copynumber: 2.9 Consensus size: 87
97632451 GTTATTATGG
* * *
97632461 CAATCTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAATCTTATCTCTCTGAAGTT
1 CAATCTTATCTCCCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAACCTTATCTCTCTAAAGTT
*
97632526 GCAGTAGAGCAGATTGAAGTCA
66 GCAGTAGAGCAGATTGAAATCA
* *
97632548 CGAATCTTATCTCCCTAAAGTT-ACAGTGAAGCAGATTAAAGA-TAGCAAACCTTATCTCTTTAA
1 C-AATCTTATCTCCCTAAAGTTGA-AGTAAAGCAGATTAAA-ACTA-CAAACCTTATCTCTCTAA
* *
97632611 AGTTGCAGTAGAGCAGGTTGAAATTA
62 AGTTGCAGTAGAGCAGATTGAAATCA
* * * * * * *
97632637 CAAGTCTTATCTCCTTGAAGTTGCAA-TAGAGCAGACTGAAAA-TATC-AATCTTATCTCCCTGA
1 CAA-TCTTATCTCCCTAAAGTTG-AAGTAAAGCAGA-TTAAAACTA-CAAACCTTATCTCTCTAA
* *
97632699 AGTTGCAGTGGAGCGGATT
62 AGTTGCAGTAGAGCAGATT
97632718 AAAGTGACAA
Statistics
Matches: 141, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
87 2 0.01
88 66 0.47
89 67 0.48
90 5 0.04
91 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (87 bp):
CAATCTTATCTCCCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAACCTTATCTCTCTAAAGTT
GCAGTAGAGCAGATTGAAATCA
Found at i:97632649 original size:133 final size:133
Alignment explanation
Indices: 97632465--97632721 Score: 340
Period size: 133 Copynumber: 1.9 Consensus size: 133
97632455 TTATGGCAAT
97632465 CTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAATCTTATCT-CTCTGAAGTTGCA
1 CTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAATCTTATCTCCT-TGAAGTTGCA
* * *
97632529 GTAGAGCAGATTG-AAGTCA-CGAATCTTATCTCCCTAAAGTTACAGTGAAGCAGATTAAAGATA
65 ATAGAGCAGACTGAAAAT-ATC-AATCTTATCTCCCTAAAGTTACAGTGAAGCAGATTAAAGATA
97632592 GCAAAC
128 GCAAAC
* * * * * * *
97632598 CTTATCTCTTTAAAGTTGCAGTAGAGCAGGTTGAAATTACAAGTCTTATCTCCTTGAAGTTGCAA
1 CTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAATCTTATCTCCTTGAAGTTGCAA
* * * *
97632663 TAGAGCAGACTGAAAATATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAG
66 TAGAGCAGACTGAAAATATCAATCTTATCTCCCTAAAGTTACAGTGAAGCAGATTAAAG
97632722 TGACAAATCC
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
133 101 0.94
134 6 0.06
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (133 bp):
CTTATCTCTCTAAAGTTGAAGTAAAGCAGATTAAAACTACAAATCTTATCTCCTTGAAGTTGCAA
TAGAGCAGACTGAAAATATCAATCTTATCTCCCTAAAGTTACAGTGAAGCAGATTAAAGATAGCA
AAC
Found at i:97633409 original size:28 final size:30
Alignment explanation
Indices: 97633356--97633422 Score: 93
Period size: 28 Copynumber: 2.3 Consensus size: 30
97633346 TTTTGAATAC
*
97633356 AAAAAAAAAAGAACACAAGATTGAATCCAA
1 AAAAAAAAAAGAACACAAGATCGAATCCAA
*
97633386 AAAAAAAAAAGAAGAC-A-ATCGAATCCAA
1 AAAAAAAAAAGAACACAAGATCGAATCCAA
*
97633414 ACAAAAAAA
1 AAAAAAAAA
97633423 CAGAGAAAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 18 0.53
29 1 0.03
30 15 0.44
ACGTcount: A:0.70, C:0.13, G:0.09, T:0.07
Consensus pattern (30 bp):
AAAAAAAAAAGAACACAAGATCGAATCCAA
Found at i:97633557 original size:2 final size:2
Alignment explanation
Indices: 97633550--97633576 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97633540 ACATACATAC
97633550 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
97633577 AATACAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97634372 original size:3 final size:3
Alignment explanation
Indices: 97634350--97634403 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
97634340 TTAGGTATTC
* * * *
97634350 TAT TAGT TAC TAT CAT TAT TAT TAA TAT TAT TAT CAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97634396 TAT TAT TA
1 TAT TAT TA
97634404 ATTTTAAACT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:97635424 original size:24 final size:23
Alignment explanation
Indices: 97635380--97635424 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
97635370 TTTTATTAAA
* * *
97635380 ATAATATAAATATTTACATATTT
1 ATAATATAAAAATTCAAATATTT
97635403 ATAATTATAAAAATTCAAATAT
1 ATAA-TATAAAAATTCAAATAT
97635425 GTAATTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAATATAAAAATTCAAATATTT
Found at i:97636178 original size:2 final size:2
Alignment explanation
Indices: 97636171--97636195 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97636161 ATGAAAAACA
97636171 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
97636196 AAACATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97641228 original size:53 final size:53
Alignment explanation
Indices: 97641162--97641293 Score: 183
Period size: 53 Copynumber: 2.5 Consensus size: 53
97641152 GCAAGATTGT
** * *
97641162 AACTGGTGGGTTATGGCATTATATGGGGAAAAGACTATATTGTATAAGACCGC
1 AACTGGTAAGTTATGGCATCATATGGGGAAAAGACTATATTATATAAGACCGC
* * * * *
97641215 AATTGGTAAGTTATGGCATCATATGGGGAGAAGACTATATTATGTAATACCGT
1 AACTGGTAAGTTATGGCATCATATGGGGAAAAGACTATATTATATAAGACCGC
97641268 AACTGGTAAGTTATGGCATCATATGG
1 AACTGGTAAGTTATGGCATCATATGG
97641294 AAAATAATAA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 69 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.30
Consensus pattern (53 bp):
AACTGGTAAGTTATGGCATCATATGGGGAAAAGACTATATTATATAAGACCGC
Found at i:97641533 original size:32 final size:31
Alignment explanation
Indices: 97641442--97641550 Score: 114
Period size: 32 Copynumber: 3.5 Consensus size: 31
97641432 TCTGGACAGA
*
97641442 AAAGCCTTTGTGGCGAGTAGTGGTTGTAAAGG
1 AAAGCCTTTGTGGCGAGTAGT-GATGTAAAGG
* *
97641474 AAAGCC-TTGTGGCTAGTAGTGCATGTAAATG
1 AAAGCCTTTGTGGCGAGTAGTG-ATGTAAAGG
* * *
97641505 ATAGCCTTTGTAGCGAGTACTAGATGTAAAGG
1 AAAGCCTTTGTGGCGAGTAGT-GATGTAAAGG
97641537 ACAA-CCTTTGTGGC
1 A-AAGCCTTTGTGGC
97641551 ATAATTCTAG
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
30 1 0.02
31 25 0.40
32 35 0.56
33 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (31 bp):
AAAGCCTTTGTGGCGAGTAGTGATGTAAAGG
Found at i:97641592 original size:61 final size:60
Alignment explanation
Indices: 97641418--97641692 Score: 182
Period size: 61 Copynumber: 4.5 Consensus size: 60
97641408 AAAAGAACGT
* * * * *
97641418 CTTTGTGGCATAACTCTGGACAGAAAAGCCTTTGTGGCGAGTAGTGGTTGTAAAGGAAAGC
1 CTTTGTGGCATAACTCTAGACAGGAAAGCCTTTGTGACGAGTACTGGATGTAAAGGAAA-C
* * * * *
97641479 C-TTGTGGC-TAGTAGTGC-ATGTAAATGATAGCCTTTGT-AGCGAGTACTAGATGTAAAGGACA
1 CTTTGTGGCATA--ACT-CTA-G-ACAGGAAAGCCTTTGTGA-CGAGTACTGGATGTAAAGGA-A
97641540 AC
59 AC
* * * * *
97641542 CTTTGTGGCATAATTCTAGACAGGAAAGCCTTTGTGACTAGTATTGGATGTAAATGATAGC
1 CTTTGTGGCATAACTCTAGACAGGAAAGCCTTTGTGACGAGTACTGGATGTAAAGGA-AAC
* * * * * * * **
97641603 TTTTGTGGCACAACTCTAGATAGGAAAACCTCTGT-AGCGAGTACTAGATGTAAGGGATGC
1 CTTTGTGGCATAACTCTAGACAGGAAAGCCTTTGTGA-CGAGTACTGGATGTAAAGGAAAC
* * *
97641663 CTTTGTGGCAAAACTCTAGAAAGGTAAGCC
1 CTTTGTGGCATAACTCTAGACAGGAAAGCC
97641693 CTTATGACAA
Statistics
Matches: 165, Mismatches: 37, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
59 2 0.01
60 35 0.21
61 78 0.47
62 5 0.03
63 34 0.21
64 9 0.05
65 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (60 bp):
CTTTGTGGCATAACTCTAGACAGGAAAGCCTTTGTGACGAGTACTGGATGTAAAGGAAAC
Found at i:97641892 original size:146 final size:146
Alignment explanation
Indices: 97641642--97641923 Score: 327
Period size: 146 Copynumber: 1.9 Consensus size: 146
97641632 CTCTGTAGCG
* * **
97641642 AGTACTAGATGTAAGGGATGCCTTTGTGGCAAAACTCTAGAAAGGTAAGCCCTTATGACAATGTC
1 AGTACTAGATGTAAAGGATGCCTTTATGGCAAAACTCTAGAAAGGTAAGCCCTTATGACAACCTC
* * * **
97641707 TGTTTAAGAACGTCTTTATGGTAAATCTCTGAGAAGAAACATCTTTGTGATGATCTCTGTTAAAA
66 TGTTTAAGAACGTCTTTATGGAAAATCTCTGAAAAGAAACATCTTAGTGACAATCTCTGTTAAAA
97641772 GAAAGTCTTTGTGGCA
131 GAAAGTCTTTGTGGCA
* * * * * * * * *
97641788 AGTACTGGATGTAAATGATGCCTTTATGGCAGAACTTTGGAAAGGTAAGTCCTTGTGGCAACCTT
1 AGTACTAGATGTAAAGGATGCCTTTATGGCAAAACTCTAGAAAGGTAAGCCCTTATGACAACCTC
* *
97641853 TGTTTAAGAACG-CTTT-TGTAGAAAATCT-TTAAAAGGAAACATCTTAGTGGCAATCTCTGTTA
66 TGTTTAAGAACGTCTTTATG--GAAAATCTCTGAAAA-GAAACATCTTAGTGACAATCTCTGTTA
*
97641915 AAGGAAAGT
128 AAAGAAAGT
97641924 TTTTCTGGTA
Statistics
Matches: 112, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
144 2 0.02
145 8 0.07
146 102 0.91
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (146 bp):
AGTACTAGATGTAAAGGATGCCTTTATGGCAAAACTCTAGAAAGGTAAGCCCTTATGACAACCTC
TGTTTAAGAACGTCTTTATGGAAAATCTCTGAAAAGAAACATCTTAGTGACAATCTCTGTTAAAA
GAAAGTCTTTGTGGCA
Found at i:97653221 original size:14 final size:14
Alignment explanation
Indices: 97653192--97653225 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
97653182 TTAGAGTTAG
*
97653192 TAAAAG-AAATAAA
1 TAAAAGAAAAGAAA
97653205 TAAAAGAAAAGAAA
1 TAAAAGAAAAGAAA
97653219 TAAAAGA
1 TAAAAGA
97653226 GTTAGTAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (14 bp):
TAAAAGAAAAGAAA
Found at i:97654192 original size:34 final size:35
Alignment explanation
Indices: 97654161--97654228 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
97654151 TCTGACTATT
97654161 GCTGGGCAC-ATAACTGTCGGTTAATCCGACTAGC
1 GCTGGGCACAATAACTGTCGGTTAATCCGACTAGC
* * * *
97654195 GCTGGGCACAATTACTGTTGGTTTATCCAACTAG
1 GCTGGGCACAATAACTGTCGGTTAATCCGACTAG
97654229 AGCTAGGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 9 0.31
35 20 0.69
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (35 bp):
GCTGGGCACAATAACTGTCGGTTAATCCGACTAGC
Found at i:97657222 original size:15 final size:15
Alignment explanation
Indices: 97657202--97657232 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97657192 GAAGTTACTT
*
97657202 AAAAAATTAAAAATA
1 AAAAAATAAAAAATA
97657217 AAAAAATAAAAAATA
1 AAAAAATAAAAAATA
97657232 A
1 A
97657233 TTTAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAAAATAAAAAATA
Done.