Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 335 of 427
Found at i:97662769 original size:23 final size:23
Alignment explanation
Indices: 97662743--97662790 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
97662733 GCGAATAGGG
* *
97662743 GATGGCGAGTTATGGACGTGGGA
1 GATGGCAAGCTATGGACGTGGGA
*
97662766 GATGGCAAGCTGTGGACGTGGGA
1 GATGGCAAGCTATGGACGTGGGA
97662789 GA
1 GA
97662791 AGGTGAGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.23, C:0.10, G:0.48, T:0.19
Consensus pattern (23 bp):
GATGGCAAGCTATGGACGTGGGA
Found at i:97662799 original size:23 final size:23
Alignment explanation
Indices: 97662755--97662802 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
97662745 TGGCGAGTTA
*
97662755 TGGACGTGGGAGATGGCAAGCTG
1 TGGACGTGGGAGAAGGCAAGCTG
**
97662778 TGGACGTGGGAGAAGGTGAGCTG
1 TGGACGTGGGAGAAGGCAAGCTG
97662801 TG
1 TG
97662803 AACATCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.10, G:0.50, T:0.19
Consensus pattern (23 bp):
TGGACGTGGGAGAAGGCAAGCTG
Found at i:97663559 original size:31 final size:31
Alignment explanation
Indices: 97663522--97663598 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
97663512 GGAGTACGAA
97663522 ATTAAATTATAATTTTTATAATTTTTAAAAG
1 ATTAAATTATAATTTTTATAATTTTTAAAAG
* * * **
97663553 ATTAAATCA-AAATTTTATATTTTTTAGGAG
1 ATTAAATTATAATTTTTATAATTTTTAAAAG
*
97663583 ATTAAAATATAATTTT
1 ATTAAATTATAATTTT
97663599 ATTTTTATTA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
30 24 0.65
31 13 0.35
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (31 bp):
ATTAAATTATAATTTTTATAATTTTTAAAAG
Found at i:97663597 original size:30 final size:30
Alignment explanation
Indices: 97663522--97663609 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
97663512 GGAGTACGAA
* *
97663522 ATTAAATTATAATTTTTATAATTTTTAAAAG
1 ATTAAAATATAA-TTTTATATTTTTTAAAAG
* **
97663553 ATT-AAATCAAAATTTTATATTTTTTAGGAG
1 ATTAAAAT-ATAATTTTATATTTTTTAAAAG
97663583 ATTAAAATATAATTTTAT-TTTTATTAA
1 ATTAAAATATAATTTTATATTTT-TTAA
97663610 TTTAAACTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 4 0.09
30 33 0.70
31 10 0.21
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (30 bp):
ATTAAAATATAATTTTATATTTTTTAAAAG
Found at i:97663867 original size:20 final size:21
Alignment explanation
Indices: 97663810--97663886 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 21
97663800 AAATTTATAG
* * *
97663810 TTTAATAAAATTATAAAATTA
1 TTTAAAAAAAATATACAATTA
* *
97663831 TTGAAAAATATAAATATTC-ATTA
1 TT-TAAAA-A-AAATATACAATTA
*
97663854 TTTAAAAAAAATATACAATTT
1 TTTAAAAAAAATATACAATTA
*
97663875 TTTTAAAAAAAT
1 TTTAAAAAAAAT
97663887 TTATAAAAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
20 7 0.16
21 17 0.40
22 7 0.16
23 7 0.16
24 5 0.12
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (21 bp):
TTTAAAAAAAATATACAATTA
Found at i:97685125 original size:19 final size:20
Alignment explanation
Indices: 97685087--97685127 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
97685077 TTTTATATTG
97685087 AAAATTTTAGAATATTATAT
1 AAAATTTTAGAATATTATAT
* *
97685107 AAAATTTT-TAATGTTATAT
1 AAAATTTTAGAATATTATAT
97685126 AA
1 AA
97685128 TTTTCTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTTTAGAATATTATAT
Found at i:97690063 original size:17 final size:17
Alignment explanation
Indices: 97690043--97690078 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
97690033 GAGAAAACAC
97690043 ATTTATTTCTGAATATG
1 ATTTATTTCTGAATATG
97690060 ATTTATTTCTGAATATG
1 ATTTATTTCTGAATATG
97690077 AT
1 AT
97690079 CCATTTCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (17 bp):
ATTTATTTCTGAATATG
Found at i:97690084 original size:17 final size:17
Alignment explanation
Indices: 97690047--97690086 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
97690037 AAACACATTT
**
97690047 ATTTCTGAATATGATTT
1 ATTTCTGAATATGATCC
97690064 ATTTCTGAATATGATCC
1 ATTTCTGAATATGATCC
97690081 ATTTCT
1 ATTTCT
97690087 CTAACTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (17 bp):
ATTTCTGAATATGATCC
Found at i:97693808 original size:25 final size:25
Alignment explanation
Indices: 97693749--97693810 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
97693739 ACCTTAACGC
**
97693749 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACGGCAGT
* * *
97693774 GATATTTGATTATTAGCACGGCAGT
1 GCTCTCTGATTATTAGCACGGCAGT
97693799 GCTCTCTGATTA
1 GCTCTCTGATTA
97693811 GCACATTTGT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.39
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGGCAGT
Found at i:97695152 original size:21 final size:21
Alignment explanation
Indices: 97695114--97695153 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
97695104 GCCAGATAAT
*
97695114 GTTTGAAAAATGTTAAATCTC
1 GTTTGAAAAATGTAAAATCTC
97695135 GTTTGAATAAATG-AAAATC
1 GTTTGAA-AAATGTAAAATC
97695154 GATGGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (21 bp):
GTTTGAAAAATGTAAAATCTC
Found at i:97710849 original size:25 final size:26
Alignment explanation
Indices: 97710815--97710973 Score: 270
Period size: 25 Copynumber: 6.2 Consensus size: 26
97710805 CATGAAATTC
*
97710815 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAACCTA
*
97710840 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAACCTA
97710865 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
97710891 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
97710916 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
97710942 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
97710968 TTATCA
1 TTATCA
97710974 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
25 72 0.56
26 57 0.44
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:97710917 original size:51 final size:51
Alignment explanation
Indices: 97710815--97710973 Score: 268
Period size: 51 Copynumber: 3.1 Consensus size: 51
97710805 CATGAAATTC
*
97710815 TTATCATGAAACATTTACCTAACC-ATTATCATGAAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCCA
97710865 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCCA
*
97710916 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCAT-GAACATTTACCTAACCCA
97710968 TTATCA
1 TTATCA
97710974 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
50 36 0.35
51 45 0.43
52 23 0.22
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (51 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCCA
Found at i:97715120 original size:25 final size:27
Alignment explanation
Indices: 97715083--97715135 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
97715073 TCAAACATGC
97715083 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
97715109 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
97715135 A
1 A
97715136 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:97716655 original size:26 final size:26
Alignment explanation
Indices: 97716619--97716753 Score: 220
Period size: 26 Copynumber: 5.2 Consensus size: 26
97716609 CATGAAATTC
97716619 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
97716645 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
97716670 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
97716696 TTATCATGAAGCATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
97716722 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
97716748 TTATCA
1 TTATCA
97716754 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
25 24 0.24
26 77 0.75
27 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:97716699 original size:51 final size:52
Alignment explanation
Indices: 97716619--97716753 Score: 229
Period size: 51 Copynumber: 2.6 Consensus size: 52
97716609 CATGAAATTC
*
97716619 TTATCATGAAACATTTACCTAA-CTCATTATCATGAAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAACCT-ATTATCATGAAACATTTACCTAACCTA
*
97716670 TTATCATGGAACATTTACCTAACCTATTATCATGAAGCATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTA
97716722 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
97716754 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
51 45 0.56
52 35 0.44
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTA
Found at i:97717644 original size:28 final size:28
Alignment explanation
Indices: 97717613--97717691 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
97717603 CTTGGAAAAC
* *
97717613 TTTTTGATAGTTTAGTGGCCAAATAGTA
1 TTTTTGATAATTAAGTGGCCAAATAGTA
**
97717641 TTTTTTTTAATTAAGTGGCCAAATAGTA
1 TTTTTGATAATTAAGTGGCCAAATAGTA
** *
97717669 TTTTTTTTAATTAAGTGACCAAA
1 TTTTTGATAATTAAGTGGCCAAA
97717692 ACAAAAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.46
Consensus pattern (28 bp):
TTTTTGATAATTAAGTGGCCAAATAGTA
Found at i:97717755 original size:81 final size:81
Alignment explanation
Indices: 97717668--97717829 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
97717658 GCCAAATAGT
97717668 ATTTTTTTTAATTAAGTGACCAAAACAAAAATTTACCCATAATTTAGCCACTAATAGTGTAGTTT
1 ATTTTTTTTAATTAAGTGACCAAAACAAAAATTTACCCATAATTTAGCCACTAATAGTGTAGTTT
97717733 ATCCTTCTTTTTAGCA
66 ATCCTTCTTTTTAGCA
97717749 ATTTTTTTTAATTAAGTGACCAAAACAAAAATTTACCCATAATTTAGCCACTAATAGTGTAGTTT
1 ATTTTTTTTAATTAAGTGACCAAAACAAAAATTTACCCATAATTTAGCCACTAATAGTGTAGTTT
97717814 ATCCTTCTTTTTAGCA
66 ATCCTTCTTTTTAGCA
97717830 TTGTCATGTT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.41
Consensus pattern (81 bp):
ATTTTTTTTAATTAAGTGACCAAAACAAAAATTTACCCATAATTTAGCCACTAATAGTGTAGTTT
ATCCTTCTTTTTAGCA
Found at i:97728629 original size:28 final size:29
Alignment explanation
Indices: 97728597--97728657 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
97728587 ATAAATAAAA
* *
97728597 AAAACATTGTAACGG-ACTTAAATTTATT
1 AAAACATTGTAACGGTACTAAAAATTATT
* *
97728625 AAAACATTTTAATGGTACTAAAAATTATT
1 AAAACATTGTAACGGTACTAAAAATTATT
97728654 AAAA
1 AAAA
97728658 ATTCACATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.34
Consensus pattern (29 bp):
AAAACATTGTAACGGTACTAAAAATTATT
Found at i:97740927 original size:22 final size:22
Alignment explanation
Indices: 97740899--97740941 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
97740889 TCTCTAAGAC
97740899 TCATGAGCTCAAAGAGAATGAA
1 TCATGAGCTCAAAGAGAATGAA
97740921 TCATGAGCTCAAAGAGAATGA
1 TCATGAGCTCAAAGAGAATGA
97740942 GATAAATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (22 bp):
TCATGAGCTCAAAGAGAATGAA
Found at i:97746606 original size:78 final size:77
Alignment explanation
Indices: 97746513--97746661 Score: 201
Period size: 77 Copynumber: 1.9 Consensus size: 77
97746503 TAAAGTATGG
* *
97746513 TTTTAATTAATAATAAAACAAAATAGTATGAGAAAGTAG-TTTTAATTAACAATAAAACAAAATA
1 TTTTAATTAACAATAAAACAAAATAGCATG-GAAAGT-GTTTTTAATTAACAATAAAACAAAATA
*
97746577 GTATGGGGAAATAA
64 GCATGGGGAAATAA
** * * *
97746591 TTTTAATTAACAATAAAACAAAATAGCATGGGGAGTGTTTTTGATTAATAATAAAACAAAGTAGC
1 TTTTAATTAACAATAAAACAAAATAGCATGGAAAGTGTTTTTAATTAACAATAAAACAAAATAGC
97746656 ATGGGG
66 ATGGGG
97746662 GGAGTGGAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 1 0.02
77 33 0.53
78 28 0.45
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (77 bp):
TTTTAATTAACAATAAAACAAAATAGCATGGAAAGTGTTTTTAATTAACAATAAAACAAAATAGC
ATGGGGAAATAA
Found at i:97746647 original size:38 final size:37
Alignment explanation
Indices: 97746512--97746661 Score: 165
Period size: 39 Copynumber: 3.9 Consensus size: 37
97746502 ATAAAGTATG
* * **
97746512 GTTTTAATTAATAATAAAACAAAATAGTATGAGAAAGT
1 GTTTTAATTAACAATAAAACAAAATAGCATG-GGGAGT
* *
97746550 AGTTTTAATTAACAATAAAACAAAATAGTATGGGGAAAT
1 -GTTTTAATTAACAATAAAACAAAATAGCATGGGG-AGT
*
97746589 AATTTTAATTAACAATAAAACAAAATAGCATGGGGAGT
1 -GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT
* * *
97746627 GTTTTTGATTAATAATAAAACAAAGTAGCATGGGG
1 G-TTTTAATTAACAATAAAACAAAATAGCATGGGG
97746662 GGAGTGGAAT
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 33 0.34
39 65 0.66
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (37 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT
Found at i:97747213 original size:2 final size:2
Alignment explanation
Indices: 97747185--97747244 Score: 79
Period size: 2 Copynumber: 31.0 Consensus size: 2
97747175 AAATATTTTA
* * *
97747185 AT AT -T AT AT -T AT GT AT AC AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97747225 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
97747245 CTTTTAATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
1 2 0.04
2 48 0.96
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:97751189 original size:15 final size:15
Alignment explanation
Indices: 97751169--97751199 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97751159 TTTACTTTCC
97751169 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
97751184 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
97751199 A
1 A
97751200 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:97759717 original size:210 final size:209
Alignment explanation
Indices: 97759180--97760144 Score: 1166
Period size: 207 Copynumber: 4.7 Consensus size: 209
97759170 CTTCATCGGG
* * * *
97759180 GCAGATCTAAGATGACGGATCTTATCTCTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTG
1 GCAGATCCAAGATGAC-GATCTTATCTCTCTGTATTCGGCAGGGAGCAAATCGAAGATATAGCTG
*
97759245 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* * * *
97759310 GAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGTAGACACATAGCAGATCTGACCTTCA
130 GAACAAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTACCTTCA
*
97759375 GATGTTTATGCTGAA
195 GATGTTTACGCTGAA
* * * ** * * *
97759390 GCGGATACAAGATG--G-T-TTGGCATC-CT-TGTGTT-TACAAGGAACAAATCGAAGACATAGC
1 GCAGATCCAAGATGACGATCTT---ATCTCTCTGTATTCGGCAGGGAGCAAATCGAAGATATAGC
* * *
97759448 TGATTTGGCTTTCACATGTTTACGTTGAAACAAATCTAAGATGATTTGTCATCTCTGTATTGTCA
63 TGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCA
* * * *
97759513 GAGAACAAATCAAAGTCTGGC-TTTTCCACTTTGATGGA-AGGCAGACATATAGCAGATCTTACA
128 GAGAACAAATCAAAGTTTGGCATCTT-CACTTTGATGGAGA-GCAGACACATAGCAGATCTTACC
97759576 TTCAGATGTTTACGCTGAA
191 TTCAGATGTTTACGCTGAA
* *
97759595 GCAAATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGAC-GATCTTATCTCTCTGTATTCGGCAGGGAGCAAATCGAAGATATAGCTG
97759660 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
*
97759725 GAACAAATCGAAGTTTGGCAT-TTCCACTTTGATGGA-AG--GCACACATAGCA-ATCTTACCTT
130 GAACAAATCAAAGTTTGGCATCTT-CACTTTGATGGAGAGCAG-ACACATAGCAGATCTTACCTT
97759785 CAGATGTTTACGCTGAA
193 CAGATGTTTACGCTGAA
* * *
97759802 GCAGATCCAAGATGACAGATCTTATCTTTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGAC-GATCTTATCTCTCTGTATTCGGCAGGGAGCAAATCGAAGATATAGCTG
* *
97759867 ATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* * ** *
97759932 GAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACATATAGCAGATCTCGCCTTCG
130 GAACAAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTACCTTCA
*
97759997 GATGTTTATGCTGAA
195 GATGTTTACGCTGAA
* ** * ** * * *
97760012 GCGGATCCAAGATG--G-T-TTGGCATC-CT-TATGCTTACAAGGAGCAAATTG-A-ATCATAGT
1 GCAGATCCAAGATGACGATCTTATC-TCTCTGTATTC-GGCAGGGAGCAAATCGAAGAT-ATAGC
* * * *
97760069 TGATTTGGCTTTCACGTGCTTACG-TCAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
63 TGATTTGGCTTTCACGTGTTTACGATGAAA-CAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
*
97760133 AGGGAACAAATC
127 AGAGAACAAATC
97760145 GAAGAAGCAG
Statistics
Matches: 657, Mismatches: 74, Indels: 54
0.84 0.09 0.07
Matches are distributed among these distances:
203 5 0.01
204 77 0.12
205 174 0.26
206 8 0.01
207 190 0.29
208 19 0.03
209 16 0.02
210 167 0.25
211 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (209 bp):
GCAGATCCAAGATGACGATCTTATCTCTCTGTATTCGGCAGGGAGCAAATCGAAGATATAGCTGA
TTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAG
AACAAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTACCTTCAG
ATGTTTACGCTGAA
Found at i:97760300 original size:45 final size:45
Alignment explanation
Indices: 97760223--97760333 Score: 152
Period size: 45 Copynumber: 2.5 Consensus size: 45
97760213 AGTTTGTAAT
* * *
97760223 GAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGG
1 GAGCAGATTGAAGATAGTAGATTTGGCGTCTCTGTAGTAGACGGG
*
97760267 GAGCAGATTGAAGATAATAGATTTGGCGTCTCTGTAGTAGACGGG
1 GAGCAGATTGAAGATAGTAGATTTGGCGTCTCTGTAGTAGACGGG
* **
97760312 GGGCAGATCAAAGATAGTAGAT
1 GAGCAGATTGAAGATAGTAGAT
97760334 ATCGCCTTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 14 0.24
45 44 0.76
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (45 bp):
GAGCAGATTGAAGATAGTAGATTTGGCGTCTCTGTAGTAGACGGG
Found at i:97761571 original size:33 final size:36
Alignment explanation
Indices: 97761547--97761650 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 36
97761537 ATAAAGTATG
*
97761547 GTTTTAATTAATAATAAAACAAAATAGTATGAGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAG-A-GAGAAGTA
* *
97761585 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAG-A--GAGAAGTA
97761624 GTTTTAATTAACAATAAAACAAAATAG
1 GTTTTAATTAACAATAAAACAAAATAG
97761651 CATGGGGAGT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 28 0.46
39 33 0.54
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (36 bp):
GTTTTAATTAACAATAAAACAAAATAGAGAGAAGTA
Found at i:97761628 original size:77 final size:77
Alignment explanation
Indices: 97761547--97761695 Score: 210
Period size: 77 Copynumber: 1.9 Consensus size: 77
97761537 ATAAAGTATG
* *
97761547 GTTTTAATTAATAATAAAACAAAATAGTATGAGAAGTAG-TTTTAATTAACAATAAAACAAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATGAGAAGT-GTTTTTAATTAACAATAAAACAAAATA
*
97761611 GTATGGGGAAATA
65 GCATGGGGAAATA
* * * * *
97761624 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTGTTTTTGATTAATAATAAAACAAAGTAG
1 GTTTTAATTAACAATAAAACAAAATAGCATGAGAAGTGTTTTTAATTAACAATAAAACAAAATAG
97761689 CATGGGG
66 CATGGGG
97761696 GGAGTGGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
76 1 0.02
77 62 0.98
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.30
Consensus pattern (77 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGAGAAGTGTTTTTAATTAACAATAAAACAAAATAG
CATGGGGAAATA
Found at i:97761637 original size:39 final size:39
Alignment explanation
Indices: 97761547--97761695 Score: 196
Period size: 38 Copynumber: 3.9 Consensus size: 39
97761537 ATAAAGTATG
* * *
97761547 GTTTTAATTAATAATAAAACAAAATAGTAT-GAGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAAGTA
* *
97761585 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAAGTA
97761624 GTTTTAATTAACAATAAAACAAAATAGCATGGGG-AGT-
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAAGTA
* * *
97761661 GTTTTTGATTAATAATAAAACAAAGTAGCATGGGG
1 G-TTTTAATTAACAATAAAACAAAATAGCATGGGG
97761696 GGAGTGGAAT
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 61 0.60
39 39 0.39
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.30
Consensus pattern (39 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGGGAAGTA
Found at i:97762243 original size:2 final size:2
Alignment explanation
Indices: 97762215--97762270 Score: 71
Period size: 2 Copynumber: 29.0 Consensus size: 2
97762205 AAATATTTTA
* * *
97762215 AT AT -T AT AT -T AT GT AT AC AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97762255 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
97762271 TTTTAATATT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
1 2 0.04
2 44 0.96
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:97766192 original size:15 final size:15
Alignment explanation
Indices: 97766172--97766202 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97766162 TTTACTTTCC
97766172 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
97766187 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
97766202 A
1 A
97766203 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:97774439 original size:204 final size:207
Alignment explanation
Indices: 97774164--97775082 Score: 1088
Period size: 204 Copynumber: 4.5 Consensus size: 207
97774154 CGGGGAGCAT
* *
97774164 ATCGAAGATATAGTTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCG
1 ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCG
* *
97774229 TCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTT-CACTTTGATGGAGAGTAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTTCCACTTTGATGGA-AGCAGACACAT
* *
97774293 AGCAGATCTGACCTTCAGATGTTTATGCTGAAGCGGATACAAGATG-G-T-TTGGCATCTTGTGT
130 AGCAGATCTGACCTTCAGATGTTTACGCTGAAGCGGATCCAAGATGAGATCTTGGCATCTTGTGT
97774355 TTACAAGGAACAA
195 TTACAAGGAACAA
* * * *
97774368 ATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAACAAATCTAAGATGATTTGTCA
1 ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCG
* * * *
97774433 TCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGC-TTTTCCACTTTGATGGAAGGCAGACATAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTTCCACTTTGATGGAA-GCAGACACAT
* * * **
97774497 AGCAGATCTTACATTCAGATGTTTACGCTGAAGC-AATCCAAGATGACAGATCTTATC-TCTCTG
130 AGCAGATCTGACCTTCAGATGTTTACGCTGAAGCGGATCCAAGATG--AGATCTTGGCATCT-TG
* ** * * *
97774560 TATTCGGCAGGGAGCAG
192 TGTT-TACAAGGAACAA
97774577 ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCG
1 ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCG
97774642 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCAT-TTCCACTTTGATGGAAG--GCACACAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTTCCACTTTGATGGAAGCAG-ACACAT
* * * *
97774704 AGCAAATCTTACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTT---ATCTTTC
130 AGCAGATCTGACCTTCAGATGTTTACGCTGAAGCGGATCCAAGATG--AGATCTTGGCATC-TTG
* * *
97774766 TGTATTCGGCAGGGAACAG
192 TGT-TT--ACAAGGAACAA
* *
97774785 ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCG
1 ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCG
* * *
97774850 TCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTT-CACTTTGATGGAGAGCAGACATAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTTCCACTTTGATGGA-AGCAGACACAT
* * *
97774914 AGCAGATCTCG-CCTTCGGATGTTTATGCTGAAGCGGATCCAAGATG-G-T-TTGGCATCCTTAT
130 AGCAGATCT-GACCTTCAGATGTTTACGCTGAAGCGGATCCAAGATGAGATCTTGGCAT-CTTGT
* *
97774975 GCTTACAAGGAGCAA
193 GTTTACAAGGAACAA
* * * * *
97774990 ATTG-A-ATCATAGTTGATTTGGCTTTCACGTGCTTACG-TCAAAGCAAATCTAAGATGATTTGG
1 ATCGAAGAT-ATAGCTGATTTGGCTTTCACGTGTTTACGATGAAA-CAAATCTAAGATGATTTGT
* *
97775052 CATCTCTGTATTGTCAGGGAACAAATCGAAG
64 CGTCTCTGTATTGTCAGAGAACAAATCGAAG
97775083 AAGCAGATTT
Statistics
Matches: 621, Mismatches: 66, Indels: 56
0.84 0.09 0.08
Matches are distributed among these distances:
203 18 0.03
204 214 0.34
205 12 0.02
206 8 0.01
207 46 0.07
208 154 0.25
209 122 0.20
210 46 0.07
211 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (207 bp):
ATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCG
TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTTCCACTTTGATGGAAGCAGACACATA
GCAGATCTGACCTTCAGATGTTTACGCTGAAGCGGATCCAAGATGAGATCTTGGCATCTTGTGTT
TACAAGGAACAA
Found at i:97774827 original size:208 final size:210
Alignment explanation
Indices: 97774115--97774959 Score: 1153
Period size: 208 Copynumber: 4.1 Consensus size: 210
97774105 CTTCATCGGG
* * * * * *
97774115 GCAGATCTAAGATGACGGATCTTATCTCTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
*
97774180 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* * * *
97774245 GAACGAATCGAAGTTTGGCATCTTCACTTTGATGG-AGAGTAGACACATAGCAGATCTGACCTTC
131 GAACAAATCAAAGTTTGGCATCTTCACTTTGATGGAAGAGCA-ACACATAGCAGATCTTACCTTC
*
97774309 AGATGTTTATGCTGAA
195 AGATGTTTACGCTGAA
* * ** * ** * * *
97774325 GCGGATACAAGATG---G-T-TTGGCATCT-TGTGTT-TACAAGGAACAAATCGAAGACATAGCT
1 GCAGATCCAAGATGACAGATCTTATC-TCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCT
* * *
97774383 GATTTGGCTTTCACATGTTTACGTTGAAACAAATCTAAGATGATTTGTCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
* * * *
97774448 AGAACAAATCAAAGTCTGGC-TTTTCCACTTTGATGGAAG-GCAGACATATAGCAGATCTTACAT
130 AGAACAAATCAAAGTTTGGCATCTT-CACTTTGATGGAAGAGCA-ACACATAGCAGATCTTACCT
97774511 TCAGATGTTTACGCTGAA
193 TCAGATGTTTACGCTGAA
*
97774529 GCA-ATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
97774593 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* *
97774658 GAACAAATCGAAGTTTGGCAT-TTCCACTTTGATGGAAG-GC-ACACATAGCAAATCTTACCTTC
131 GAACAAATCAAAGTTTGGCATCTT-CACTTTGATGGAAGAGCAACACATAGCAGATCTTACCTTC
97774720 AGATGTTTACGCTGAA
195 AGATGTTTACGCTGAA
*
97774736 GCAGATCCAAGATGACAGATCTTATCTTTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
* *
97774801 ATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* * **
97774866 GAACGAATCAAAGTTTGGCATCTTCACTTTGATGG-AGAGCAGACATATAGCAGATCTCGCCTTC
131 GAACAAATCAAAGTTTGGCATCTTCACTTTGATGGAAGAGCA-ACACATAGCAGATCTTACCTTC
* *
97774930 GGATGTTTATGCTGAA
195 AGATGTTTACGCTGAA
*
97774946 GCGGATCCAAGATG
1 GCAGATCCAAGATG
97774960 GTTTGGCATC
Statistics
Matches: 560, Mismatches: 59, Indels: 32
0.86 0.09 0.05
Matches are distributed among these distances:
203 12 0.02
204 147 0.26
205 10 0.02
206 5 0.01
207 45 0.08
208 162 0.29
209 122 0.22
210 57 0.10
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCATCTTCACTTTGATGGAAGAGCAACACATAGCAGATCTTACCTTCA
GATGTTTACGCTGAA
Found at i:97775234 original size:45 final size:45
Alignment explanation
Indices: 97775157--97775267 Score: 152
Period size: 45 Copynumber: 2.5 Consensus size: 45
97775147 AGTTTGTAAT
* * *
97775157 GAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGG
1 GAGCAGATTGAAGATAGTAGATTTGGCGTCTCTGTAGTAGACGGG
*
97775201 GAGCAGATTGAAGATAATAGATTTGGCGTCTCTGTAGTAGACGGG
1 GAGCAGATTGAAGATAGTAGATTTGGCGTCTCTGTAGTAGACGGG
* **
97775246 GGGCAGATCAAAGATAGTAGAT
1 GAGCAGATTGAAGATAGTAGAT
97775268 ATCGCCTTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 14 0.24
45 44 0.76
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (45 bp):
GAGCAGATTGAAGATAGTAGATTTGGCGTCTCTGTAGTAGACGGG
Found at i:97776575 original size:78 final size:77
Alignment explanation
Indices: 97776493--97776642 Score: 203
Period size: 77 Copynumber: 1.9 Consensus size: 77
97776483 ATAAAGTATG
* *
97776493 GTTTTAATTAATAATAAAACAAAATAGTATGAGAAAGTAG-TTTTAATTAACAATAAAACAAAAT
1 GTTTTAATTAACAATAAAACAAAATAGCATG-GAAAGT-GTTTTTAATTAACAATAAAACAAAAT
*
97776557 AGTATGGGGAAATA
64 AGCATGGGGAAATA
** * * *
97776571 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTGTTTTTGATTAATAATAAAACAAAGTAG
1 GTTTTAATTAACAATAAAACAAAATAGCATGGAAAGTGTTTTTAATTAACAATAAAACAAAATAG
97776636 CATGGGG
66 CATGGGG
97776643 GGAGTGGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 1 0.02
77 33 0.52
78 29 0.46
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.29
Consensus pattern (77 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGAAAGTGTTTTTAATTAACAATAAAACAAAATAG
CATGGGGAAATA
Found at i:97776628 original size:38 final size:38
Alignment explanation
Indices: 97776493--97776642 Score: 185
Period size: 39 Copynumber: 3.9 Consensus size: 38
97776483 ATAAAGTATG
* * **
97776493 GTTTTAATTAATAATAAAACAAAATAGTATGAGAAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGCATG-GGGAGTA
* *
97776532 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGG-AGTA
97776571 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTA
* * *
97776608 GTTTTTGATTAATAATAAAACAAAGTAGCATGGGG
1 G-TTTTAATTAACAATAAAACAAAATAGCATGGGG
97776643 GGAGTGGAAT
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
37 1 0.01
38 33 0.33
39 66 0.66
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.29
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTA
Found at i:97777214 original size:25 final size:24
Alignment explanation
Indices: 97777161--97777225 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
97777151 CCATGTAAAT
*
97777161 ATTTTAATATTATATTATGTATAC
1 ATTTTAATATTATATTATATATAC
97777185 ATTTT-ATATATATATATATATATATC
1 ATTTTAATAT-TATAT-TATATATA-C
*
97777211 -TTTTAATATTGTATT
1 ATTTTAATATTATATT
97777226 TTTATTGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
23 4 0.11
24 11 0.31
25 15 0.43
26 5 0.14
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (24 bp):
ATTTTAATATTATATTATATATAC
Found at i:97779515 original size:25 final size:25
Alignment explanation
Indices: 97779487--97779534 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
97779477 GAGAGTTAAA
97779487 TTTTTTTAAAATCAAGACTAAATAG
1 TTTTTTTAAAATCAAGACTAAATAG
97779512 TTTTTTTAAAATCAAGACTAAAT
1 TTTTTTTAAAATCAAGACTAAAT
97779535 TAACATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (25 bp):
TTTTTTTAAAATCAAGACTAAATAG
Found at i:97784210 original size:15 final size:15
Alignment explanation
Indices: 97784190--97784220 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97784180 GATGGGAGGT
97784190 AGCTTAAAATACTAA
1 AGCTTAAAATACTAA
97784205 AGCTTAAAATACTAA
1 AGCTTAAAATACTAA
97784220 A
1 A
97784221 ATGTTGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (15 bp):
AGCTTAAAATACTAA
Found at i:97789431 original size:18 final size:18
Alignment explanation
Indices: 97789408--97789444 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97789398 AGATATCATT
**
97789408 ATCTAAAATTTATTAAAA
1 ATCTAAAATAAATTAAAA
97789426 ATCTAAAATAAATTAAAA
1 ATCTAAAATAAATTAAAA
97789444 A
1 A
97789445 ATATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATCTAAAATAAATTAAAA
Found at i:97789850 original size:15 final size:15
Alignment explanation
Indices: 97789830--97789862 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
97789820 AAGTTAATGA
97789830 AATCTATTTTTTATT
1 AATCTATTTTTTATT
97789845 AATCTATTTTTTATT
1 AATCTATTTTTTATT
97789860 AAT
1 AAT
97789863 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (15 bp):
AATCTATTTTTTATT
Found at i:97796885 original size:30 final size:31
Alignment explanation
Indices: 97796851--97796924 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 31
97796841 GATGATATGT
97796851 AAATATTTAATTAATATTTTA-AAATTTTAA
1 AAATATTTAATTAATATTTTATAAATTTTAA
* * **
97796881 AAATATTT-TTTTATATTTTATACTTTTTAA
1 AAATATTTAATTAATATTTTATAAATTTTAA
*
97796911 TAA-ATTTAATTAAT
1 AAATATTTAATTAAT
97796925 TTTAATTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
29 14 0.40
30 21 0.60
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (31 bp):
AAATATTTAATTAATATTTTATAAATTTTAA
Found at i:97798414 original size:21 final size:19
Alignment explanation
Indices: 97798377--97798415 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
97798367 TCTAAATCTC
*
97798377 TGTTTAACTATGTTTTCTT
1 TGTTTAACTATATTTTCTT
97798396 TGTTGTAACTTATATTTTCT
1 TGTT-TAAC-TATATTTTCT
97798416 CGATAGTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (19 bp):
TGTTTAACTATATTTTCTT
Found at i:97807923 original size:11 final size:10
Alignment explanation
Indices: 97807879--97807920 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
97807869 CACAATAGTC
97807879 CTCTCACAATT
1 CTCTCA-AATT
97807890 CTCTCTAAATT
1 CTCTC-AAATT
97807901 -TCTCCAAATT
1 CTCT-CAAATT
97807911 CTCTCAAATT
1 CTCTCAAATT
97807921 TCTTTCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 14 0.50
11 13 0.46
12 1 0.04
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:97809052 original size:7 final size:7
Alignment explanation
Indices: 97809036--97809082 Score: 76
Period size: 7 Copynumber: 6.7 Consensus size: 7
97809026 TAGTCGTTTC
97809036 GTATTTA
1 GTATTTA
*
97809043 GTACTTA
1 GTATTTA
97809050 GTATTTA
1 GTATTTA
97809057 GTATTTA
1 GTATTTA
*
97809064 TTATTTA
1 GTATTTA
97809071 GTATTTA
1 GTATTTA
97809078 GTATT
1 GTATT
97809083 ACGTATATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (7 bp):
GTATTTA
Found at i:97809645 original size:30 final size:30
Alignment explanation
Indices: 97809583--97809646 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
97809573 ACGATGCGGA
* *
97809583 CCCATCAGCAGCGCCCACATAATCACCGGG
1 CCCATCAGCAGCGCCCACACAACCACCGGG
* *
97809613 CCCATCAGCAGCGCCCACACAGCCACCTGG
1 CCCATCAGCAGCGCCCACACAACCACCGGG
97809643 CCCA
1 CCCA
97809647 ACACTTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.48, G:0.19, T:0.08
Consensus pattern (30 bp):
CCCATCAGCAGCGCCCACACAACCACCGGG
Found at i:97810295 original size:131 final size:130
Alignment explanation
Indices: 97810123--97810840 Score: 1120
Period size: 131 Copynumber: 5.4 Consensus size: 130
97810113 ACCAACATTG
*
97810123 ACTTTTTTTAATTTTATTAAAATTAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTTTAT
1 ACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTTTAT
97810188 ATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTT
66 ATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTT
* * *
97810253 ACTTTTTTAAAATTTTATTAAAATAAATATTCTTTTAAATTAGACAATATTTTTTATTAATTTTA
1 ACTTTTTT-TAATTTTATTAAAATAAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTTTA
97810318 TATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTT
65 TATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTT
97810383 T
130 T
97810384 ACTTTTTTTTAATTTTATTAAAAATAAATGTTCTTTTAAATTA-ACCAATATTTTTTTATTATTT
1 AC-TTTTTTTAATTTTATT-AAAATAAATGTTCTTTTAAATTAGA-CAATA-TTTTTTATTATTT
97810448 TTATATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTA
62 TTATATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTA
*
97810513 CTTC
127 CTTT
*
97810517 ACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATA-TTTTTATTATTTTTAT
1 ACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTTTAT
* *
97810581 ATATATATATATTTTATATAGTTTCAATTAATAAAATAAAAGTTATTTTTAATATTTTAATCGTA
66 AT-T-TA-AT-TTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTA
97810646 CTTT
127 CTTT
*
97810650 ACTTTTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATA-TTTTTATTATTTT
1 AC---TTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTT
* * *
97810714 TATATCT-ATTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTAT
63 TATATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTAC
97810778 TTT
128 TTT
* * * * * *
97810781 ACTTTTTTTAAAATTTTAATACAATAAATATTCTTTTAAATTAGTCAATAATTTTCATTA
1 ACTTTTTTT--AATTTTATTAAAATAAATGTTCTTTTAAATTAGACAATATTTTTTATTA
97810841 GAATAAATAT
Statistics
Matches: 550, Mismatches: 22, Indels: 31
0.91 0.04 0.05
Matches are distributed among these distances:
128 7 0.01
129 18 0.03
130 44 0.08
131 224 0.41
132 53 0.10
133 139 0.25
134 1 0.00
136 64 0.12
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (130 bp):
ACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTTTAT
ATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTT
Found at i:97810727 original size:264 final size:260
Alignment explanation
Indices: 97810125--97810840 Score: 1148
Period size: 264 Copynumber: 2.7 Consensus size: 260
97810115 CAACATTGAC
* *
97810125 TTTTTTTAATTTTATTAAAATTAATGTTCTTTTAAATTAGACAATATTTTTTATTATTTTTATAT
1 TTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTTATTATTTTTATAT
97810190 TTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTAC
66 TTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTAC
*
97810255 TTTTTTAAAATTTTATTAAAATAAATATTCTTTTAAATTAGACAATATTTTTTATTAATTTTATA
131 TTTTTT-TAATTTTATTAAAATAAATATTCTTTTAAATTAGACAATA-TTTTTATTAATTTTATA
* *
97810320 TTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTA
194 TTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTATTTTTAATATTTTAATCGTACTTTA
97810385 CT
259 CT
*
97810387 TTTTTTTAATTTTATTAAAAATAAATGTTCTTTTAAATTAACCAATATTTTTTTATTATTTTTAT
1 TTTTTTTAATTTTATT-AAAATAAATGTTCTTTTAAATTAGCCAATA-TTTTTTATTATTTTTAT
*
97810452 ATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTC
64 ATTTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTT
* * *
97810517 ACTTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATA
129 ACTTTTTTTAATTTTATTAAAATAAATATTCTTTTAAATTAGACAATATTTTTATTAATTTTATA
97810582 TATATATATATTTTATATAGTTTCAATTAATAAAATAAAAGTTATTTTTAATATTTTAATCGTAC
194 T-T-TA-AT-TTTTATATAGTTTCAATTAATAAAATAAAAGTTATTTTTAATATTTTAATCGTAC
97810647 TTTACTTT
255 TTTAC--T
97810655 TTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATA-TTTTTATTATTTTTATAT
1 TTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTTATTATTTTTATAT
* * *
97810719 CT-ATTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTATTTTAC
66 TTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTAC
* * * *
97810783 TTTTTTTAAAATTTTAATACAATAAATATTCTTTTAAATTAGTCAATAATTTTCATTA
131 TTTTTTT--AATTTTATTAAAATAAATATTCTTTTAAATTAGACAAT-ATTTTTATTA
97810841 GAATAAATAT
Statistics
Matches: 423, Mismatches: 20, Indels: 17
0.92 0.04 0.04
Matches are distributed among these distances:
262 33 0.08
263 65 0.15
264 157 0.37
265 21 0.05
266 92 0.22
267 38 0.09
268 17 0.04
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (260 bp):
TTTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTTATTATTTTTATAT
TTAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTAC
TTTTTTTAATTTTATTAAAATAAATATTCTTTTAAATTAGACAATATTTTTATTAATTTTATATT
TAATTTTTATATAGTTTCAATTAATAAAATAAAAGTTATTTTTAATATTTTAATCGTACTTTACT
Found at i:97814141 original size:125 final size:125
Alignment explanation
Indices: 97813920--97814226 Score: 458
Period size: 125 Copynumber: 2.5 Consensus size: 125
97813910 AGTCTAAGGC
* * * * * *
97813920 TTTTTCAGATACTACTATAGCAATAAATCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGAT
1 TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGAGAGCTTTTTTCCGTAATTTTGCGGAC
*
97813985 AGTGCATCCTGCTTGAAGCGTTTTGACACTATTT-TTTCAGAAACATCTTCTCAAAATTAT
66 AGTCCATCCTGCTTGAAGCGTTTTGACACTATTTGTTT-AGAAACATCTTCTCAAAATTAT
* *
97814045 TTTTTCAAATACTACTGTAGCAAAAAAGCGTCCATGTGAGAG-TTTTTTCCGTAATTTTGCGGAC
1 TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGAGAGCTTTTTTCCGTAATTTTGCGGAC
*
97814109 AGTCCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTAT
66 AGTCCATCCTGCTTGAAGCG-TTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTAT
* *
97814170 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACAT-AGGAGCTTTTTTCCGTAATT
1 TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGA-GAGCTTTTTTCCGTAATT
97814227 AATAGTTAAT
Statistics
Matches: 164, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
124 39 0.24
125 108 0.66
126 17 0.10
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (125 bp):
TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGAGAGCTTTTTTCCGTAATTTTGCGGAC
AGTCCATCCTGCTTGAAGCGTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTAT
Found at i:97814277 original size:5 final size:5
Alignment explanation
Indices: 97814267--97814311 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
97814257 GCCCTAAACC
97814267 TTAAT TTAAT TTAAT TT--T TTAAT TTAAT AGTTAAT TTAA- TTAAT T
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT --TTAAT TTAAT TTAAT T
97814312 AACCCTTAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
3 3 0.09
4 4 0.11
5 23 0.66
7 5 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TTAAT
Found at i:97814289 original size:13 final size:13
Alignment explanation
Indices: 97814270--97814313 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
97814260 CTAAACCTTA
97814270 ATTTAATTTAATT
1 ATTTAATTTAATT
*
97814283 TTTTAATTTAA-T
1 ATTTAATTTAATT
*
97814295 AGTTAATTTAATT
1 ATTTAATTTAATT
*
97814308 AATTAA
1 ATTTAA
97814314 CCCTTAACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (13 bp):
ATTTAATTTAATT
Found at i:97814597 original size:28 final size:27
Alignment explanation
Indices: 97814550--97814602 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
97814540 GCTTTCGGGG
*
97814550 AAAATGGCCATTTCCGGTAAATAATAA
1 AAAATGGCCATTTCCAGTAAATAATAA
97814577 AAAATAGGCCCATTT-CAGTAAATAAT
1 AAAAT-GG-CCATTTCCAGTAAATAAT
97814603 GATATAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 12 0.52
29 6 0.26
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.26
Consensus pattern (27 bp):
AAAATGGCCATTTCCAGTAAATAATAA
Found at i:97814796 original size:22 final size:22
Alignment explanation
Indices: 97814761--97814802 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
97814751 TGGTTGTTGC
* *
97814761 GAAATTTAATTATAATTTTTTA
1 GAAATTAAAATATAATTTTTTA
97814783 GAAATTAAAATATAATTTTT
1 GAAATTAAAATATAATTTTT
97814803 CTCATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
GAAATTAAAATATAATTTTTTA
Found at i:97815014 original size:20 final size:20
Alignment explanation
Indices: 97814989--97815037 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
97814979 TGTATAATCG
*
97814989 GTTAATTGACTCGAATTACC
1 GTTAATTGACTCAAATTACC
*
97815009 GTTAATTGACTCAAATTACT
1 GTTAATTGACTCAAATTACC
*
97815029 ATTAATTGA
1 GTTAATTGA
97815038 ATTAATCGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (20 bp):
GTTAATTGACTCAAATTACC
Found at i:97816514 original size:53 final size:53
Alignment explanation
Indices: 97816456--97816557 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
97816446 CTCAATACTG
97816456 AAAAAAAAATTAAACAATTTTGTTCAAGACC-GAGAACATTGTGTATTACAAAC
1 AAAAAAAAATTAAACAATTTTGTTCAAGACCGGA-AACATTGTGTATTACAAAC
* * * *
97816509 AAAAAATAATTAAACACTTTTGTTCAATACCGGAAACATTGTGTCTTAC
1 AAAAAAAAATTAAACAATTTTGTTCAAGACCGGAAACATTGTGTATTAC
97816558 CAATTGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 42 0.95
54 2 0.05
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (53 bp):
AAAAAAAAATTAAACAATTTTGTTCAAGACCGGAAACATTGTGTATTACAAAC
Found at i:97817701 original size:23 final size:23
Alignment explanation
Indices: 97817675--97817718 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
97817665 AAATATTTTC
*
97817675 TAAAAAAAATATAATAATAAATT
1 TAAAAAAAATATAAAAATAAATT
**
97817698 TAAAAATCATATAAAAATAAA
1 TAAAAAAAATATAAAAATAAA
97817719 AATGTTGTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
TAAAAAAAATATAAAAATAAATT
Found at i:97817702 original size:54 final size:52
Alignment explanation
Indices: 97817639--97817809 Score: 156
Period size: 53 Copynumber: 3.2 Consensus size: 52
97817629 ATTTGATCCC
97817639 AATTCTAAAAAATTCA-AAAAATACATAAATATTTTCTAAAAAAAATATAATAATA
1 AATT-TAAAAAATTCATAAAAATA-ATAAATATTTTC--AAAAAAATATAATAATA
* *
97817694 AATTT-AAAAA-TCATATAAAAATAA-AAATGTTGTTCACAACAAATAATAATATATAA
1 AATTTAAAAAATTC--ATAAAAATAATAAATATT-TTCA-AAAAAAT-ATAATA-AT-A
*
97817750 AATTTAAAAAATAT-ATAAAAATAAATAAATATTTTC-AAAAAGTATAATAATA
1 AATTTAAAAAAT-TCATAAAAAT-AATAAATATTTTCAAAAAAATATAATAATA
97817802 AATTTAAA
1 AATTTAAA
97817810 TTTTATATTA
Statistics
Matches: 98, Mismatches: 5, Indels: 29
0.74 0.04 0.22
Matches are distributed among these distances:
52 12 0.12
53 19 0.19
54 18 0.18
55 18 0.18
56 14 0.14
57 10 0.10
58 6 0.06
59 1 0.01
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (52 bp):
AATTTAAAAAATTCATAAAAATAATAAATATTTTCAAAAAAATATAATAATA
Found at i:97817779 original size:18 final size:18
Alignment explanation
Indices: 97817741--97817781 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97817731 AACAAATAAT
*
97817741 AATATATAAAATTTAAAA
1 AATATATAAAATATAAAA
97817759 AATATATAAAA-ATAAATA
1 AATATATAAAATATAAA-A
97817777 AATAT
1 AATAT
97817782 TTTCAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATATATAAAATATAAAA
Found at i:97817812 original size:29 final size:30
Alignment explanation
Indices: 97817735--97817814 Score: 74
Period size: 29 Copynumber: 2.7 Consensus size: 30
97817725 GTTCACAACA
* *
97817735 AATAATAATATATAAAATTTAAAAAATATAT
1 AATAATAA-ATTTAAATTTTAAAAAATATAT
* * * *
97817766 AAAAATAAA-TAAATATTTTCAAAAA-GTAT
1 AATAATAAATTTAA-ATTTTAAAAAATATAT
97817795 AATAATAAATTTAAATTTTA
1 AATAATAAATTTAAATTTTA
97817815 TATTAATATT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
29 18 0.47
30 13 0.34
31 7 0.18
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (30 bp):
AATAATAAATTTAAATTTTAAAAAATATAT
Found at i:97819222 original size:6 final size:6
Alignment explanation
Indices: 97819211--97819290 Score: 56
Period size: 6 Copynumber: 13.2 Consensus size: 6
97819201 GCTGGGCAAT
* * * *
97819211 AAAAGA AAAAGA AGAAGCA AAGAAGA AAAAGA AAAAGA AGAA-C AAGAGA
1 AAAAGA AAAAGA AAAAG-A AA-AAGA AAAAGA AAAAGA AAAAGA AAAAGA
* * *
97819260 AGAAGA AGAAGA AAGAGA AAAA-A AATAAGA A
1 AAAAGA AAAAGA AAAAGA AAAAGA AA-AAGA A
97819291 GAGGAAGAGG
Statistics
Matches: 57, Mismatches: 12, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
5 5 0.09
6 42 0.74
7 7 0.12
8 3 0.05
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.01
Consensus pattern (6 bp):
AAAAGA
Found at i:97819269 original size:35 final size:34
Alignment explanation
Indices: 97819211--97819312 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 34
97819201 GCTGGGCAAT
97819211 AAAAGAAAA-AGAAGAAGCAAAGAAGAAAAAGAAAA
1 AAAAGAAAAGAGAAGAAG--AAGAAGAAAAAGAAAA
* *
97819246 AGAAGAACAAGAGAAGAAGAAGAAGAAAGAGAAAA
1 AAAAGAA-AAGAGAAGAAGAAGAAGAAAAAGAAAA
*
97819281 AAAATAAGAAGAGGAAGAGGAGAAG-AGAAAAA
1 AAAAGAA-AAGA-GAAGA--AGAAGAAGAAAAA
97819313 TTCTAGAATG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
35 30 0.54
36 7 0.12
37 14 0.25
38 5 0.09
ACGTcount: A:0.71, C:0.02, G:0.26, T:0.01
Consensus pattern (34 bp):
AAAAGAAAAGAGAAGAAGAAGAAGAAAAAGAAAA
Found at i:97819278 original size:26 final size:26
Alignment explanation
Indices: 97819211--97819275 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
97819201 GCTGGGCAAT
97819211 AAAAGAAAAAGAAGAAGCAAAGAAGA
1 AAAAGAAAAAGAAGAAGCAAAGAAGA
97819237 AAAAGAAAAAGAAGAA-CAAGAGAAGA
1 AAAAGAAAAAGAAGAAGCAA-AGAAGA
*
97819263 AGAAGAAGAAAGA
1 AAAAGAA-AAAGA
97819276 GAAAAAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
25 3 0.08
26 28 0.78
27 5 0.14
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (26 bp):
AAAAGAAAAAGAAGAAGCAAAGAAGA
Found at i:97819289 original size:18 final size:18
Alignment explanation
Indices: 97819229--97819290 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
97819219 AAGAAGAAGC
*
97819229 AAAGAAGAAAAAGAAAAA
1 AAAGAAGAAAGAGAAAAA
* * *
97819247 GAAGAA-CAAGAGAAGAA
1 AAAGAAGAAAGAGAAAAA
*
97819264 GAAGAAGAAAGAGAAAAA
1 AAAGAAGAAAGAGAAAAA
*
97819282 AAATAAGAA
1 AAAGAAGAA
97819291 GAGGAAGAGG
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
17 14 0.40
18 21 0.60
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.02
Consensus pattern (18 bp):
AAAGAAGAAAGAGAAAAA
Found at i:97819292 original size:3 final size:3
Alignment explanation
Indices: 97819213--97819272 Score: 61
Period size: 3 Copynumber: 20.7 Consensus size: 3
97819203 TGGGCAATAA
* * * * *
97819213 AAG AAA AAG AAG AAG CA- AAG AAG AAA AAG AAA AAG AAG AAC AAG -AG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
97819259 AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AA
97819273 AGAGAAAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
2 3 0.07
3 42 0.93
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:97819311 original size:27 final size:27
Alignment explanation
Indices: 97819230--97819298 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 27
97819220 AGAAGAAGCA
* * * *
97819230 AAGAAGAAAAAGAAAAAGAAGAACAAGAG
1 AAGAAGAAGAAGAAAGAGAA-AA-AAAAT
97819259 AAGAAGAAGAAGAAAGAGAAAAAAAAT
1 AAGAAGAAGAAGAAAGAGAAAAAAAAT
*
97819286 AAGAAGAGGAAGA
1 AAGAAGAAGAAGA
97819299 GGAGAAGAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 15 0.43
28 2 0.06
29 18 0.51
ACGTcount: A:0.71, C:0.01, G:0.26, T:0.01
Consensus pattern (27 bp):
AAGAAGAAGAAGAAAGAGAAAAAAAAT
Found at i:97828813 original size:46 final size:45
Alignment explanation
Indices: 97828761--97828964 Score: 197
Period size: 46 Copynumber: 4.5 Consensus size: 45
97828751 GTCGATGCCG
* * *
97828761 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
97828807 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
97828851 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
97828897 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
97828943 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
97828965 AGCCCTCGTC
Statistics
Matches: 139, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.04
44 33 0.24
45 4 0.03
46 97 0.70
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:97841385 original size:13 final size:13
Alignment explanation
Indices: 97841369--97841398 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
97841359 TCCTTTTCTT
97841369 CTCTCTTTTTCCC
1 CTCTCTTTTTCCC
*
97841382 CTCTCTTTTTTCC
1 CTCTCTTTTTCCC
97841395 CTCT
1 CTCT
97841399 GACCACTGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (13 bp):
CTCTCTTTTTCCC
Found at i:97853077 original size:30 final size:29
Alignment explanation
Indices: 97853017--97853077 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
97853007 AGGCATAAAC
* *
97853017 ATATTGGGCCATTTAATCAAAAATTAAAA
1 ATATTGGGCCATTTAATAAAAAATGAAAA
* * *
97853046 ATATTGGGTCATTTATTTAAAAAATGGAAA
1 ATATTGGGCCATTTA-ATAAAAAATGAAAA
97853076 AT
1 AT
97853078 GAAGGACAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (29 bp):
ATATTGGGCCATTTAATAAAAAATGAAAA
Found at i:97856620 original size:29 final size:28
Alignment explanation
Indices: 97856565--97856627 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
97856555 CTGACTCGAA
*
97856565 TATATTATGTTATAAAAATATTTATATTAAT
1 TATA-TATGTTATAAAAATAATTATA-T-AT
*
97856596 TATATATGTTA-AATAATAATTATATAT
1 TATATATGTTATAAAAATAATTATATAT
97856623 TATAT
1 TATAT
97856628 TTATATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.23
28 1 0.03
29 11 0.37
30 7 0.23
31 4 0.13
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
TATATATGTTATAAAAATAATTATATAT
Found at i:97856622 original size:31 final size:31
Alignment explanation
Indices: 97856565--97856633 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 31
97856555 CTGACTCGAA
97856565 TATATTATGTTATAAAAATATTTATATTA-AT
1 TATA-TATGTTATAAAAATATTTATATTATAT
*
97856596 TATATATGTTA-AATAATAATTATATATTATAT
1 TATATATGTTATAAAAAT-ATT-TATATTATAT
97856628 T-TATAT
1 TATATAT
97856634 TAAATCACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 5 0.15
30 10 0.29
31 16 0.47
32 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
TATATATGTTATAAAAATATTTATATTATAT
Found at i:97856815 original size:39 final size:39
Alignment explanation
Indices: 97856736--97856824 Score: 128
Period size: 39 Copynumber: 2.3 Consensus size: 39
97856726 AAAAATTATA
*
97856736 TTTAATACAATAAAATATTTATTATATTTATTTGTA-TTT
1 TTTAATATAATAAAATATTTATTATATTTA-TTGTATTTT
97856775 TTTAATATAATAAAATATTTATTATATTTA-TGATAGTTTT
1 TTTAATATAATAAAATATTTATTATATTTATTG-TA-TTTT
97856815 TTTAATATAA
1 TTTAATATAA
97856825 ATATTTGTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
37 2 0.04
38 2 0.04
39 29 0.63
40 13 0.28
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (39 bp):
TTTAATATAATAAAATATTTATTATATTTATTGTATTTT
Found at i:97857507 original size:13 final size:13
Alignment explanation
Indices: 97857489--97857518 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
97857479 TAAAATTTAA
97857489 ATTAGTTAATATT
1 ATTAGTTAATATT
97857502 ATTAGTTAATATT
1 ATTAGTTAATATT
97857515 ATTA
1 ATTA
97857519 TATTTTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (13 bp):
ATTAGTTAATATT
Found at i:97866150 original size:60 final size:60
Alignment explanation
Indices: 97866079--97866200 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
97866069 ACATTCAAAA
97866079 AATCGAATATGCAAGGTTGACTACTTTCGAAGATTCTACCACATTCACCTACTGCCTTAG
1 AATCGAATATGCAAGGTTGACTACTTTCGAAGATTCTACCACATTCACCTACTGCCTTAG
*
97866139 AATCGAATATGCAAGGTTGACTATTTTCGAAGATTCTACCACATTCACCTACTGCCTTAG
1 AATCGAATATGCAAGGTTGACTACTTTCGAAGATTCTACCACATTCACCTACTGCCTTAG
97866199 AA
1 AA
97866201 GTAAAGAGAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (60 bp):
AATCGAATATGCAAGGTTGACTACTTTCGAAGATTCTACCACATTCACCTACTGCCTTAG
Found at i:97868091 original size:47 final size:47
Alignment explanation
Indices: 97868027--97868137 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
97868017 GACATTGAGT
*
97868027 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
97868074 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
97868121 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
97868138 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:97873883 original size:11 final size:11
Alignment explanation
Indices: 97873855--97873889 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
97873845 AATGGTCAAG
97873855 ATCAAAAGGAAA
1 ATCAAAA-GAAA
*
97873867 AACAAAAGAAA
1 ATCAAAAGAAA
97873878 ATCAAAAGAAA
1 ATCAAAAGAAA
97873889 A
1 A
97873890 ACAAGACGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.74, C:0.09, G:0.11, T:0.06
Consensus pattern (11 bp):
ATCAAAAGAAA
Found at i:97879283 original size:22 final size:23
Alignment explanation
Indices: 97879238--97879283 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97879228 AATACACTTT
*
97879238 TTCTCTAAATTTCTTGTTAGGTA
1 TTCTCTAAATTTCATGTTAGGTA
* *
97879261 TTCTCTCAATTT-ATGTTATGTA
1 TTCTCTAAATTTCATGTTAGGTA
97879283 T
1 T
97879284 GGTTGCATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.22, C:0.13, G:0.11, T:0.54
Consensus pattern (23 bp):
TTCTCTAAATTTCATGTTAGGTA
Found at i:97887383 original size:39 final size:39
Alignment explanation
Indices: 97887329--97887404 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
97887319 GAAAAGTCTG
97887329 AATTCATGTGGGTAAACCTAATGGTATATTAACACTCTA
1 AATTCATGTGGGTAAACCTAATGGTATATTAACACTCTA
97887368 AATTCATGTGGGTAAACCTAATGGTATATTAACACTC
1 AATTCATGTGGGTAAACCTAATGGTATATTAACACTC
97887405 AACCACAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (39 bp):
AATTCATGTGGGTAAACCTAATGGTATATTAACACTCTA
Found at i:97894573 original size:25 final size:26
Alignment explanation
Indices: 97894516--97894574 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
97894506 TTTTTCCCAG
*
97894516 TAAAATTTTGGTAGTTTTACCCTCGA
1 TAAAATTTTGATAGTTTTACCCTCGA
97894542 TAAAATTTTGAT-GATTTTACCC-CGA
1 TAAAATTTTGATAG-TTTTACCCTCGA
97894567 TAAAATTT
1 TAAAATTT
97894575 CAAGAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
25 12 0.39
26 19 0.61
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (26 bp):
TAAAATTTTGATAGTTTTACCCTCGA
Found at i:97896468 original size:12 final size:12
Alignment explanation
Indices: 97896442--97896480 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
97896432 TTTAAATGAA
97896442 TTCATTTCCCATT
1 TTCATTT-CCATT
* *
97896455 TTTATTTTCATT
1 TTCATTTCCATT
97896467 TTCATTTCCATT
1 TTCATTTCCATT
97896479 TT
1 TT
97896481 GAGGAAACCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCATTTCCATT
Found at i:97900236 original size:30 final size:30
Alignment explanation
Indices: 97900180--97900237 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
97900170 TAAGCACTTC
*
97900180 CACACGGGTGATCCACAGGCTCGTGTGTGA
1 CACACGGGTGATCCACAGCCTCGTGTGTGA
97900210 CACACGGGTAGA-CCACACGCCT-GTGTGT
1 CACACGGGT-GATCCACA-GCCTCGTGTGT
97900238 CATGATCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (30 bp):
CACACGGGTGATCCACAGCCTCGTGTGTGA
Found at i:97918392 original size:55 final size:52
Alignment explanation
Indices: 97918267--97918449 Score: 168
Period size: 55 Copynumber: 3.4 Consensus size: 52
97918257 CTTAACATTT
* * *
97918267 CCATGTCTTGACATGGTCTTACGTGGTATCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTGCCTTATGAACTCACCAATG
* * * ** * *
97918319 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATC-TTGCCTTAT-G-AACTCACCAATG
*** * *
97918374 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGAT-CTTGCCTTAT-GAACTCACCAATG
* *
97918428 CCATGCCTTGGCATGGTCTTAC
1 CCATGTCTTGACATGGTCTTAC
97918450 TTGGTATCCT
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
52 26 0.25
53 8 0.08
54 30 0.29
55 40 0.38
56 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (52 bp):
CCATGTCTTGACATGGTCTTACATGGGATCTTGCCTTATGAACTCACCAATG
Found at i:97921771 original size:20 final size:21
Alignment explanation
Indices: 97921734--97921773 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
97921724 TCATTCTTGG
*
97921734 AAGGTGGATATTGCGATACCC
1 AAGGTGGATATCGCGATACCC
*
97921755 AAGG-GGATATCGTGATACC
1 AAGGTGGATATCGCGATACC
97921774 ATAGAAGGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (21 bp):
AAGGTGGATATCGCGATACCC
Found at i:97932671 original size:25 final size:25
Alignment explanation
Indices: 97932643--97932725 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
97932633 GAATAATGGA
* * *
97932643 AAGCTCATGCAAGTTGAATAACAAG
1 AAGCTCATGCAAGCTAAATAACAGG
* * **
97932668 AAGCTCATACGAGCTAAATAATGGG
1 AAGCTCATGCAAGCTAAATAACAGG
*
97932693 AAGCTCTTGCAAGCTAAATAACAGG
1 AAGCTCATGCAAGCTAAATAACAGG
97932718 AAGCTCAT
1 AAGCTCAT
97932726 AAGAGCTGTG
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.20
Consensus pattern (25 bp):
AAGCTCATGCAAGCTAAATAACAGG
Found at i:97932697 original size:50 final size:50
Alignment explanation
Indices: 97932618--97932732 Score: 149
Period size: 50 Copynumber: 2.3 Consensus size: 50
97932608 TGTAAATAGT
* * * * *
97932618 AAGCTCTTTCGAGCTGAATAATGGAAAGCTCATGCAAGTTGAATAACAAG
1 AAGCTCATACGAGCTAAATAATGGAAAGCTCATGCAAGCTAAATAACAAG
* * *
97932668 AAGCTCATACGAGCTAAATAATGGGAAGCTCTTGCAAGCTAAATAACAGG
1 AAGCTCATACGAGCTAAATAATGGAAAGCTCATGCAAGCTAAATAACAAG
*
97932718 AAGCTCATAAGAGCT
1 AAGCTCATACGAGCT
97932733 GTGGTGTGTT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (50 bp):
AAGCTCATACGAGCTAAATAATGGAAAGCTCATGCAAGCTAAATAACAAG
Found at i:97938918 original size:24 final size:25
Alignment explanation
Indices: 97938891--97938937 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
97938881 TTATACCATG
* *
97938891 AAAATGACCGTT-TGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
97938915 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
97938938 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:97939006 original size:20 final size:20
Alignment explanation
Indices: 97938981--97939039 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
97938971 TAAATATGGT
97938981 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
97939001 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
97939021 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
97939040 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:97939021 original size:11 final size:11
Alignment explanation
Indices: 97938985--97939039 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97938975 TATGGTATGT
97938985 ATGATATGCAC
1 ATGATATGCAC
* *
97938996 ATGAAATG--T
1 ATGATATGCAC
97939005 ATGATATGCAC
1 ATGATATGCAC
*
97939016 ATGATATG--T
1 ATGATATGCAC
97939025 ATGATATGCAC
1 ATGATATGCAC
97939036 ATGA
1 ATGA
97939040 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:97939117 original size:24 final size:24
Alignment explanation
Indices: 97939090--97939208 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
97939080 GAGGAAGTGA
*
97939090 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
97939114 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
97939137 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
97939161 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97939185 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97939209 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:97939159 original size:47 final size:48
Alignment explanation
Indices: 97939090--97939208 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
97939080 GAGGAAGTGA
97939090 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
97939137 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
97939185 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97939209 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:97939484 original size:30 final size:31
Alignment explanation
Indices: 97939400--97939493 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
97939390 CGTTTACAGT
97939400 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
97939431 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
97939462 AAAGGCTTCGG-CCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
97939492 AA
1 AA
97939494 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 20 0.32
31 42 0.68
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:97945902 original size:13 final size:13
Alignment explanation
Indices: 97945884--97945909 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97945874 GGCCCATTGG
97945884 GCTTTCGGGCCCA
1 GCTTTCGGGCCCA
97945897 GCTTTCGGGCCCA
1 GCTTTCGGGCCCA
97945910 TTTGGGTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.38, G:0.31, T:0.23
Consensus pattern (13 bp):
GCTTTCGGGCCCA
Found at i:97946196 original size:25 final size:25
Alignment explanation
Indices: 97946168--97946215 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97946158 TTATACCATG
* * *
97946168 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
97946193 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
97946216 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:97946284 original size:20 final size:20
Alignment explanation
Indices: 97946259--97946317 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
97946249 TAAATATGGT
97946259 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
97946279 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
97946299 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
97946318 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:97946299 original size:11 final size:11
Alignment explanation
Indices: 97946263--97946317 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97946253 TATGGTATGT
97946263 ATGATATGCAC
1 ATGATATGCAC
* *
97946274 ATGAAATG--T
1 ATGATATGCAC
97946283 ATGATATGCAC
1 ATGATATGCAC
*
97946294 ATGATATG--T
1 ATGATATGCAC
97946303 ATGATATGCAC
1 ATGATATGCAC
97946314 ATGA
1 ATGA
97946318 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:97946395 original size:24 final size:24
Alignment explanation
Indices: 97946368--97946510 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
97946358 GAGGAAGTGA
97946368 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
97946392 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
97946416 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
97946439 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
97946463 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
97946487 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97946511 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:97946461 original size:47 final size:47
Alignment explanation
Indices: 97946368--97946510 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
97946358 GAGGAAGTGA
97946368 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
97946416 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
97946463 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
97946511 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:97946484 original size:71 final size:72
Alignment explanation
Indices: 97946368--97946511 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
97946358 GAGGAAGTGA
*
97946368 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
97946431 CCAGTTAT
65 CCAGTTAT
** * *
97946439 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
97946504 CAGTTAT
66 CAGTTAT
97946511 A
1 A
97946512 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:97946786 original size:30 final size:31
Alignment explanation
Indices: 97946702--97946795 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
97946692 CGTTTACAGT
97946702 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
97946733 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
97946764 AAAGGCTTCGG-CCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
97946794 AA
1 AA
97946796 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 20 0.32
31 42 0.68
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:97955505 original size:25 final size:24
Alignment explanation
Indices: 97955467--97955515 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
97955457 AAATAAAAAA
*
97955467 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
97955493 ATTT-AAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
97955516 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 3 0.14
25 8 0.36
26 4 0.18
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:97955535 original size:21 final size:21
Alignment explanation
Indices: 97955487--97955544 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
97955477 ATAATAAATC
97955487 AAAT-ATATTTAAAAC--ATAA
1 AAATAATA-TTAAAACAAATAA
*
97955506 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
* *
97955528 AAATAATACTGAAACAA
1 AAATAATATTAAAACAA
97955545 TTCTTAAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 3 0.10
20 7 0.23
21 14 0.45
22 7 0.23
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:97957444 original size:177 final size:177
Alignment explanation
Indices: 97957166--97957865 Score: 902
Period size: 177 Copynumber: 4.0 Consensus size: 177
97957156 CACTATAACT
* * * *
97957166 TTAGAGAAATA-GGACTGGTGGCTTAAATCTGCTCCATT-TCCAATACATGGAGATAAGATTCGC
1 TTAGAGAGATATGG-CTAGTGGCTAAAATCTGCTCCATTGT-CGATACATGGAGATAAGATTCGC
* * * * *
97957229 CATCCTT-GATCTACTCCACAACTTCTTAAGGAGATAAGATTTTCAATCTTCAGTCTACTTTCTT
64 CAT-CTTCGATCTGCTCCACAACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTT
* *
97957293 GTTACCTCAGGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACC
128 GCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACC
* * * *
97957343 TTGGAGAGATAAGGCTAATGGCTAAAATCTGCTCCATTGTCGATACATTGAGATAAGATTCGCCA
1 TTAGAGAGATATGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCA
* * *
97957408 TCTTCGATCTGCTCTACAACTGCTTAGGGAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGCT
66 TCTTCGATCTGCTCCACAACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCT
* *
97957473 ACCTCAGGAAGATAAGACTACAATCACCAACCTTCTCTCTTGCTACC
131 ACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACC
* * * * * *
97957520 TTAGAGAGATATGGCTAGTCGCTAAAATCTGCTCTATTGTTGATACATGAAAATAAAATTCGCCA
1 TTAGAGAGATATGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCA
* * * * * *
97957585 TCTTCGATTTTCCCCACAGCTGCTGAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCTTTGCT
66 TCTTCGATCTGCTCCACAACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCT
* * *
97957650 ACCTCAGGAAGATAAAAGTACAATCGCCAACCTGCTCTCTTGGTACC
131 ACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACC
* * * * * * *
97957697 TCAAAGAGATATGGCTAGTGGCTAAAATTTACTCCATTGCCGATACATGGAGTTAAGATTCACCA
1 TTAGAGAGATATGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCA
* * * * * * *
97957762 TCTTTGATCTGCTCCACAATTGCTCAAGGAGATAAAAACCTCAATCTTCAGTATGCTTCCTTGCT
66 TCTTCGATCTGCTCCACAACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCT
*
97957827 ACCTCAGGAAAATAAGACTACAATCGCCAACCTGCTCTC
131 ACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTC
97957866 CTACTAATGG
Statistics
Matches: 450, Mismatches: 70, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
176 3 0.01
177 444 0.99
178 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (177 bp):
TTAGAGAGATATGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCA
TCTTCGATCTGCTCCACAACTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCT
ACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACC
Found at i:97958003 original size:158 final size:158
Alignment explanation
Indices: 97957715--97958003 Score: 393
Period size: 158 Copynumber: 1.8 Consensus size: 158
97957705 ATATGGCTAG
* * * *
97957715 TGGCTAAAATTTACTCCATTGCCGATACATGGAGTTAAGATTCACCATCTTTGATCTGCTCCACA
1 TGGCTAAAATCTACTCCATTACCGAAACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACA
* * *
97957780 ATTGCTCAAGGAGATAAAAACCTCAATCTTCAGTATGCTTCCTTGCTACCTCAGGAAAATAAGAC
66 ACTGCTCAAGGAGATAAAAACCTAAATCTTCAATATGCTTCCTTGCTACCTCAGGAAAATAAGAC
97957845 TACAATCGCCAACCTGCTCTCCTACTAA
131 TACAATCGCCAACCTGCTCTCCTACTAA
* * *
97957873 TGGCTAAAATCTGCTCCATTACCGAAACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCACT
1 TGGCTAAAATCTACTCCATTACCGAAACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACA
* * * * * * *
97957938 ACTGC-CTAGGGAGATAAGATCTGTAAAT-TTCAATTTGTTTCCTTGCTACCTCAGGAAGATAAG
66 ACTGCTC-AAGGAGATAAAAAC-CTAAATCTTCAATATGCTTCCTTGCTACCTCAGGAAAATAAG
97958001 ACT
129 ACT
97958004 TGTATATTGA
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 107 0.96
159 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (158 bp):
TGGCTAAAATCTACTCCATTACCGAAACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACA
ACTGCTCAAGGAGATAAAAACCTAAATCTTCAATATGCTTCCTTGCTACCTCAGGAAAATAAGAC
TACAATCGCCAACCTGCTCTCCTACTAA
Found at i:97958327 original size:45 final size:45
Alignment explanation
Indices: 97958235--97958362 Score: 134
Period size: 45 Copynumber: 2.8 Consensus size: 45
97958225 TTATTTATAA
* * *
97958235 CTTCTATCTATTCCACTACAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCGATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * *
97958280 CTTC-ATTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TAAT
1 CTTCGA-TCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCT-AT
* * *
97958325 CTTCGATCTACTCTACTGGAACTTCAGAGAAATAAGAT
1 CTTCGATCTACTCCACTGCAACTTCAGGGAAATAAGAT
97958363 CTGACTTCAC
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
44 2 0.03
45 65 0.96
46 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (45 bp):
CTTCGATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
Found at i:97958530 original size:64 final size:64
Alignment explanation
Indices: 97958428--97958683 Score: 386
Period size: 64 Copynumber: 4.0 Consensus size: 64
97958418 TTCATGTATC
* * ** *
97958428 ATGCTTATGCCAAATAATTAGGATACTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
97958492 ATGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTA
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
97958556 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
97958620 ATGTTGATGTCAAATAATTAGGACGCTATGATCGAAATGAAGCACATGCTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
97958684 TTATGAATGA
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 173 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (64 bp):
ATGCTGATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:97958656 original size:128 final size:128
Alignment explanation
Indices: 97958428--97958682 Score: 447
Period size: 128 Copynumber: 2.0 Consensus size: 128
97958418 TTCATGTATC
97958428 ATGCTTATGCCAAATAATTAGGATACTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGA
1 ATGCTTATGCCAAATAATTAGGATACTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGA
*
97958493 TGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTA
66 TGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAAGCAAATGCTCCTAACTAAATGTA
* * *
97958556 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGA
1 ATGCTTATGCCAAATAATTAGGATACTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGA
* * *
97958621 TGTTGATGTCAAATAATTAGGACGCTATGATCGAAATGAAGCACATGCTCCTAACTAGATGT
66 TGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAAGCAAATGCTCCTAACTAAATGT
97958683 GTTATGAATG
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 120 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (128 bp):
ATGCTTATGCCAAATAATTAGGATACTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGA
TGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAAGCAAATGCTCCTAACTAAATGTA
Found at i:97966681 original size:14 final size:14
Alignment explanation
Indices: 97966662--97966692 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
97966652 ATTGAACTTG
97966662 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
97966676 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
97966690 ATT
1 ATT
97966693 TCTGGTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (14 bp):
ATTATTTTAGTTTT
Found at i:97975639 original size:25 final size:25
Alignment explanation
Indices: 97975611--97975662 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
97975601 TTTGGCTTGA
*
97975611 CATTTACTAAGAAATTTCAAATATT
1 CATTTACTAAGAAATATCAAATATT
* * *
97975636 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGAAATATCAAATATT
97975661 CA
1 CA
97975663 AATTACTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (25 bp):
CATTTACTAAGAAATATCAAATATT
Found at i:97979783 original size:21 final size:21
Alignment explanation
Indices: 97979759--97979811 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
97979749 TGCCTGAAAT
97979759 GACACACGAGGTACCTGATAC
1 GACACACGAGGTACCTGATAC
97979780 GACACACGAGGTACCTGATAC
1 GACACACGAGGTACCTGATAC
*
97979801 -ACACATGAGGT
1 GACACACGAGGT
97979812 GCCTAAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.34, C:0.26, G:0.25, T:0.15
Consensus pattern (21 bp):
GACACACGAGGTACCTGATAC
Found at i:97979840 original size:43 final size:41
Alignment explanation
Indices: 97979735--97979843 Score: 103
Period size: 41 Copynumber: 2.6 Consensus size: 41
97979725 CCTGATCAGT
* *
97979735 ATACGACACATAAGTGCCTGAAATGACACACGAGGTACCTG
1 ATACGACACATAAGTGCCTGAAATCACACACGAGGTACCTA
* * * * * *
97979776 ATACGACACACGAGGTACCTGATA-CACACATGAGGTGCCTAAA
1 ATACGACACA-TAAGTGCCTGAAATCACACACGAGGTACCT--A
97979819 ATACGACACATAAAGTGCCTGAAAT
1 ATACGACACAT-AAGTGCCTGAAAT
97979844 ATGACACATA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
41 23 0.45
42 9 0.18
43 19 0.37
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTGAAATCACACACGAGGTACCTA
Found at i:97979862 original size:23 final size:23
Alignment explanation
Indices: 97979735--97979863 Score: 94
Period size: 23 Copynumber: 6.0 Consensus size: 23
97979725 CCTGATCAGT
97979735 ATACGACACAT-AAGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
** * *
97979757 AT--GACACACGAGGTACCTG--
1 ATACGACACATAAAGTGCCTGAA
** * *
97979776 ATACGACACACGAGGTACCTG--
1 ATACGACACATAAAGTGCCTGAA
* * *
97979797 ATAC-ACACATGAGGTGCCTAAA
1 ATACGACACATAAAGTGCCTGAA
97979819 ATACGACACATAAAGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
*
97979842 ATATGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
97979864 TCGGCAAAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
19 2 0.02
20 19 0.21
21 28 0.31
22 6 0.07
23 36 0.40
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:97982269 original size:43 final size:42
Alignment explanation
Indices: 97982222--97982334 Score: 104
Period size: 43 Copynumber: 2.6 Consensus size: 42
97982212 TTTGATTACG
** **
97982222 TGTAAGACCATGTCTGGGATATTGGCATCGTTAAT-CGATTTCA
1 TGTAAGACCATGTCTGGGATA-TGGCATCAAT-ATGCGATAACA
* * *
97982265 TGTAAGACTC-TGTCTGGAACAGTGGCATCAATATGTGATAACA
1 TGTAAGAC-CATGTCTGGGATA-TGGCATCAATATGCGATAACA
*
97982308 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGATATGGCAT
97982335 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
42 9 0.16
43 46 0.82
44 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGATATGGCATCAATATGCGATAACA
Found at i:97982324 original size:86 final size:85
Alignment explanation
Indices: 97982172--97982334 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
97982162 ACCGAGATGT
* ** * * * *
97982172 GATTACATGTAAGACTATGTCTGGAACATTAGCATTGTATTTTGATTACGTGTAAGACCATGTCT
1 GATTACATGTAAGACTATGTCTGGAACAGTAGCATAATATTGTGATAACATGTAAGACCATATCT
97982237 GGGATATTGGCATCGTTAATC
66 GGGATA-TGGCATCGTTAATC
* * *
97982258 GATTTCATGTAAGACTCTGTCTGGAACAGTGGCATCAATA-TGTGATAACATGTAAGACCATATC
1 GATTACATGTAAGACTATGTCTGGAACAGTAGCAT-AATATTGTGATAACATGTAAGACCATATC
97982322 TGGGATATGGCAT
65 TGGGATATGGCAT
97982335 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
85 6 0.09
86 58 0.88
87 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (85 bp):
GATTACATGTAAGACTATGTCTGGAACAGTAGCATAATATTGTGATAACATGTAAGACCATATCT
GGGATATGGCATCGTTAATC
Found at i:97991380 original size:18 final size:18
Alignment explanation
Indices: 97991353--97991392 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
97991343 CACCAATCTG
97991353 TTATTCGAGTTATTCAAA
1 TTATTCGAGTTATTCAAA
* *
97991371 TTATTTGAGTTATTCGAA
1 TTATTCGAGTTATTCAAA
97991389 TTAT
1 TTAT
97991393 AAAATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.50
Consensus pattern (18 bp):
TTATTCGAGTTATTCAAA
Found at i:97993258 original size:40 final size:40
Alignment explanation
Indices: 97993199--97993300 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
97993189 AAATTGAATA
* * * *
97993199 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGTTAAGACCCGAAGACAATTATGCTAGAAACT
* * ***
97993239 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGTTAAGACCCGAAGACAATTATGCTAGAAACT
97993279 ATATCCGGGTTAAGACCCGAAG
1 ATATCCGGGTTAAGACCCGAAG
97993301 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGTTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:97993301 original size:40 final size:40
Alignment explanation
Indices: 97993238--97993366 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
97993228 TGCTGGAAAT
* *
97993238 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
97993278 TATATCCGGGTTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGTTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * * *
97993318 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGA-GTGAC
97993358 TATATCCGG
1 TATATCCGG
97993367 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:98006738 original size:25 final size:23
Alignment explanation
Indices: 98006686--98006740 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
98006676 TATAAATAGT
98006686 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
98006709 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
98006734 AATAGTG
1 AATAGTG
98006741 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:98006878 original size:27 final size:28
Alignment explanation
Indices: 98006848--98006919 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
98006838 TAATATAATT
98006848 AAAATATATACATAAGATAACAT-GTA-G
1 AAAATATATACATAA-ATAACATAGTATG
* * * * *
98006875 AAAAAAAATATATAAATAATATAGTATT
1 AAAATATATACATAAATAACATAGTATG
98006903 AAAGATATATACATAAA
1 AAA-ATATATACATAAA
98006920 ATAGTATAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
26 6 0.18
27 15 0.44
28 3 0.09
29 10 0.29
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAATATATACATAAATAACATAGTATG
Found at i:98006910 original size:25 final size:25
Alignment explanation
Indices: 98006804--98006999 Score: 95
Period size: 25 Copynumber: 7.9 Consensus size: 25
98006794 ATATAAAAAA
* * * *
98006804 ATATGTACATAATATAGTGTAAAAA
1 ATATATACATAATATAGTATTAAAG
*
98006829 ATACATACATAATATA--ATTAAA-
1 ATATATACATAATATAGTATTAAAG
* ** *
98006851 ATATATACATAAGATAACATGTAGAAAAAAA
1 ATATATACAT-A-AT-ATA-GT--ATTAAAG
*
98006882 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
98006907 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
98006932 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
98006956 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
98006978 A-ATATATATAATATAATATTAA
1 ATATATACATAATATAGTATTAA
98007000 GAAATACAAT
Statistics
Matches: 129, Mismatches: 28, Indels: 29
0.69 0.15 0.16
Matches are distributed among these distances:
21 1 0.01
22 24 0.19
23 19 0.15
24 10 0.08
25 54 0.42
26 1 0.01
27 2 0.02
28 2 0.02
29 2 0.02
30 5 0.04
31 9 0.07
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:98007333 original size:16 final size:16
Alignment explanation
Indices: 98007295--98007333 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98007285 CTCCAAAAAA
*
98007295 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
98007311 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
98007327 AATAACT
1 AAAAACT
98007334 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:98007519 original size:18 final size:18
Alignment explanation
Indices: 98007496--98007549 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
98007486 ACAAGTGGTG
98007496 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
98007514 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
98007526 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
98007544 GTGGAG
1 GTGGAG
98007550 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:98007528 original size:30 final size:30
Alignment explanation
Indices: 98007492--98007559 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
98007482 AGGTACAAGT
98007492 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
98007522 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
98007552 GGTGGTGG
1 GGTGGTGG
98007560 CAAAGGCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.16, C:0.06, G:0.53, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Done.