Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 336 of 427
Found at i:98008108 original size:21 final size:21
Alignment explanation
Indices: 98008078--98008122 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
98008068 TCTGATATAA
98008078 TCAATCAGCTCCACTGCAACT
1 TCAATCAGCTCCACTGCAACT
* * *
98008099 TCAATTAGCTTCACTGTAACT
1 TCAATCAGCTCCACTGCAACT
98008120 TCA
1 TCA
98008123 GGGATATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (21 bp):
TCAATCAGCTCCACTGCAACT
Found at i:98008328 original size:88 final size:86
Alignment explanation
Indices: 98008192--98008397 Score: 223
Period size: 87 Copynumber: 2.4 Consensus size: 86
98008182 TCCTGAGCTT
* * * * *
98008192 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAACATTAAAAATAGAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACAAAACATT-AAAACAGAAATTGAAAATA
* * *
98008257 GCTCAGCACGTGAGCCAAGGCTC
64 CCTCAGCACGTAACCCAAGGCTC
** **
98008280 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATAC
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACAT-TAAAACAGAAATTGAAAATAC
* * * *
98008345 CTCGGTATGTAACCCGAGGCTC
65 CTCAGCACGTAACCCAAGGCTC
* *
98008367 AACTCACCTCTCGTAATATGAGTTGATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
98008398 GCAAAGCATA
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
87 74 0.75
88 25 0.25
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (86 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACATTAAAACAGAAATTGAAAATACC
TCAGCACGTAACCCAAGGCTC
Found at i:98008577 original size:91 final size:87
Alignment explanation
Indices: 98008436--98008770 Score: 363
Period size: 91 Copynumber: 3.7 Consensus size: 87
98008426 AATAAAAATC
* * *
98008436 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
98008501 TGACAAACATAAATTGAAAAAAAAAAGA
65 TGA-AAACA-AAATTG---AAAAACAGA
* *
98008529 AATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
98008593 GGAAAAACAAAATTTGAAAAGCAGA
66 -G-AAAACAAAA-TTGAAAAACAGA
* ** * *
98008618 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
98008683 TTGAAACACAGAAATTGAAGAACAGA
64 TTGAAA-ACA-AAATTGAAAAACAGA
* * * * *
98008709 AATGGAAAACACCTCAGC--GT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
98008771 TTTTAAAGAC
Statistics
Matches: 209, Mismatches: 25, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
86 6 0.03
87 29 0.14
88 1 0.00
89 29 0.14
90 4 0.02
91 101 0.48
92 18 0.09
93 21 0.10
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (87 bp):
AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAACAAAATTGAAAAACAGA
Found at i:98008656 original size:182 final size:178
Alignment explanation
Indices: 98008438--98008770 Score: 456
Period size: 182 Copynumber: 1.8 Consensus size: 178
98008428 TAAAAATCAA
* * * *
98008438 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTT
1 TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTT
* * * * *
98008502 GACAA-ACATAAATTGAAAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTC
66 GA-AACACAGAAATTG---AAAAAAAGAAATGGAAAACACCTCAGC--GTCCTGAGGCTCAACTC
*
98008566 ACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAGCAGAAT
125 ACCTCTCGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAGCAGAAT
98008620 TTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
* * * *
98008684 TGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTC
65 TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTC
98008749 TCGCAATATGAGCTGATTTTTT
130 TCGCAATATGAGCTGATTTTTT
98008771 TTTTAAAGAC
Statistics
Matches: 134, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
178 40 0.30
180 22 0.16
182 53 0.40
183 19 0.14
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (178 bp):
TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTT
GAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAGCAGAAT
Found at i:98008885 original size:73 final size:73
Alignment explanation
Indices: 98008727--98009214 Score: 665
Period size: 73 Copynumber: 6.6 Consensus size: 73
98008717 ACACCTCAGC
* * * *
98008727 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTTA-AAGACAGAAATTGAA
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGACAA-ACAAAAATTGAA
98008791 AATACCTCAACGT
61 AATACCTCAACGT
* * *
98008804 GTCTTGAGGCTCAATTTACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAATAC
98008869 CTCAACGT
66 CTCAACGT
* * * *
98008877 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTA-AAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAA-ACAAAAATTGAAAAT
98008941 ACCTCAACGT
64 ACCTCAACGT
*
98008951 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAATAC
*
98009016 CTCAGCGT
66 CTCAACGT
* * * *
98009024 GTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAAAT
98009089 ACCTCAACGT
64 ACCTCAACGT
* * * *
98009099 GTCTTGAGGCTCAACTCACCTCTTGCAATATGAGCTGAGTTTTGACAAACAAAAATTGAAATTAC
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAATAC
*
98009164 CTCAGCGT
66 CTCAACGT
* *
98009172 GTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
98009215 TTAGAAACAT
Statistics
Matches: 365, Mismatches: 40, Indels: 16
0.87 0.10 0.04
Matches are distributed among these distances:
73 197 0.54
74 69 0.19
75 65 0.18
77 34 0.09
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (73 bp):
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAATAC
CTCAACGT
Found at i:98008997 original size:147 final size:147
Alignment explanation
Indices: 98008719--98009234 Score: 813
Period size: 147 Copynumber: 3.5 Consensus size: 147
98008709 AATGGAAAAC
* *
98008719 ACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTTAAAGACA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTTTAAAGACA
* *
98008782 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAATTTACCTCTCGCAATATGAGTTGATTTTT
63 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
98008847 GACAAACAAAAATTGAAATT
128 GACAAACAAAAATTGAAATT
* * *
98008867 ACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAGACAGAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAGACAGAA
98008932 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
66 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
98008997 AAACAAAAATTGAAATT
131 AAACAAAAATTGAAATT
* * *
98009014 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-AAAGACAGA
* * *
98009079 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGCTGAGTTTTGA
65 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
98009144 CAAACAAAAATTGAAATT
130 CAAACAAAAATTGAAATT
* * *
98009162 ACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAGAA-ACATA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTA-AAGACAGA
*
98009226 AATTAAAAA
65 AATTGAAAA
98009235 AATGAAAATT
Statistics
Matches: 348, Mismatches: 16, Indels: 9
0.93 0.04 0.02
Matches are distributed among these distances:
147 160 0.46
148 150 0.43
150 38 0.11
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (147 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAGACAGAA
ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
AAACAAAAATTGAAATT
Found at i:98009440 original size:14 final size:12
Alignment explanation
Indices: 98009404--98009446 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 12
98009394 TGATTTTTGA
98009404 AAAACAGAAATT
1 AAAACAGAAATT
98009416 AAAAGCAGAAATT
1 AAAA-CAGAAATT
98009429 GGAAAACAGAAATT
1 --AAAACAGAAATT
98009443 AAAA
1 AAAA
98009447 ATACCTCGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 8 0.29
13 8 0.29
14 8 0.29
15 4 0.14
ACGTcount: A:0.65, C:0.07, G:0.14, T:0.14
Consensus pattern (12 bp):
AAAACAGAAATT
Found at i:98009447 original size:13 final size:13
Alignment explanation
Indices: 98009403--98009447 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
98009393 TTGATTTTTG
98009403 AAAAACAGAAATT
1 AAAAACAGAAATT
*
98009416 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
98009429 GGAAAACAGAAATT
1 -AAAAACAGAAATT
98009443 AAAAA
1 AAAAA
98009448 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.67, C:0.07, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:98009459 original size:100 final size:100
Alignment explanation
Indices: 98009240--98009591 Score: 399
Period size: 100 Copynumber: 3.6 Consensus size: 100
98009230 AAAAAAATGA
* *
98009240 AAATTGAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* ** *
98009303 AAAAGCAGAATTTGTAAGGAAAAATTGAAAAACAG
66 AAAAGCAGAAATTAAAAGCAAAAATTGAAAAACAG
* * *
98009338 AAATTGAAAATACCTCAGCGTGCCCTGATGCTCAACTTACCTCTCGTAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
98009403 AAAAACAGAAATTAAAAGCAGAAATTGGAAAACAG
66 AAAAGCAGAAATTAAAAGCAAAAATTGAAAAACAG
* * * *
98009438 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
98009503 AAAAGCATAAATT----G-----A---AAAAACGG
66 AAAAGCAGAAATTAAAAGCAAAAATTGAAAAACAG
* * *
98009526 AAATTGAACATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
98009591 T
64 T
98009592 TTGAAAGATA
Statistics
Matches: 220, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
88 22 0.10
90 41 0.19
91 1 0.00
96 1 0.00
98 54 0.25
100 101 0.46
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (100 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAGCAGAAATTAAAAGCAAAAATTGAAAAACAG
Found at i:98009580 original size:90 final size:87
Alignment explanation
Indices: 98009416--98009591 Score: 235
Period size: 90 Copynumber: 2.0 Consensus size: 87
98009406 AACAGAAATT
* * * *
98009416 AAAAGCAGAAATTGGAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
98009481 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * * *
98009503 AAAAGCATAAATTGAAAAAACGGAAATTGAACATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
98009568 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
98009592 TTGAAAGATA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
87 13 0.17
88 20 0.26
89 1 0.01
90 42 0.55
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:98011939 original size:20 final size:19
Alignment explanation
Indices: 98011914--98011987 Score: 73
Period size: 20 Copynumber: 3.7 Consensus size: 19
98011904 TGGTTAAAAT
98011914 TTAAAAATAAAAAACATTAA
1 TTAAAAATAAAAAA-ATTAA
98011934 TTAAAAAT--AAAAA-TAA
1 TTAAAAATAAAAAAATTAA
98011950 TTAAAAATATCATCAAAATATTAA
1 TTAAAAATA--A--AAAA-ATTAA
98011974 TTAAAAATAAAAAA
1 TTAAAAATAAAAAA
98011988 GCTTGAAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
16 11 0.24
17 1 0.02
18 4 0.09
20 12 0.26
22 5 0.11
23 1 0.02
24 12 0.26
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
TTAAAAATAAAAAAATTAA
Found at i:98020410 original size:3 final size:3
Alignment explanation
Indices: 98020404--98020439 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
98020394 GTGTTGTGTT
98020404 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
98020440 ATACTTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:98020466 original size:17 final size:18
Alignment explanation
Indices: 98020446--98020485 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
98020436 TTATATACTT
98020446 TAATATAAATATTTAT-A
1 TAATATAAATATTTATAA
*
98020463 TAATA-AAATATTTTTAA
1 TAATATAAATATTTATAA
98020480 TAATAT
1 TAATAT
98020486 TATTTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATATAAATATTTATAA
Found at i:98020482 original size:14 final size:14
Alignment explanation
Indices: 98020444--98020482 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
98020434 TATTATATAC
98020444 TTTAATATAAATATT
1 TTTAATA-AAATATT
98020459 TATATAATAAAATATT
1 T-T-TAATAAAATATT
98020475 TTTAATAA
1 TTTAATAA
98020483 TATTATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.27
15 2 0.09
16 9 0.41
17 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTAATAAAATATT
Found at i:98034572 original size:15 final size:15
Alignment explanation
Indices: 98034552--98034593 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
98034542 CTAGAAAGGT
*
98034552 AATAATAATGACAAC
1 AATAATAATAACAAC
98034567 AATAATAATAACAAC
1 AATAATAATAACAAC
98034582 AATAATAATAAC
1 AATAATAATAAC
98034594 GTTGTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.64, C:0.12, G:0.02, T:0.21
Consensus pattern (15 bp):
AATAATAATAACAAC
Found at i:98039220 original size:53 final size:53
Alignment explanation
Indices: 98039134--98039258 Score: 162
Period size: 53 Copynumber: 2.4 Consensus size: 53
98039124 CATGACGCTG
* * *
98039134 AAGACCATATCGTGGAAGACCATAACTGGTGGGTTA-CAACATCATATGGAAAG
1 AAGACCATATCGTGTAAGACCATAACTGATGGGTTATCAA-ATCATATGGAAAA
* * * *
98039187 AATACCATATTGTGTAAGACCGTAACTGATGGGTTATGAAATCATATGGAAAA
1 AAGACCATATCGTGTAAGACCATAACTGATGGGTTATCAAATCATATGGAAAA
*
98039240 AAGACCATATCATGTAAGA
1 AAGACCATATCGTGTAAGA
98039259 TTGCAACTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
53 59 0.97
54 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (53 bp):
AAGACCATATCGTGTAAGACCATAACTGATGGGTTATCAAATCATATGGAAAA
Found at i:98039275 original size:53 final size:53
Alignment explanation
Indices: 98039174--98039293 Score: 132
Period size: 53 Copynumber: 2.3 Consensus size: 53
98039164 GGGTTACAAC
* * ** * * *
98039174 ATCATATGGAAAGAATACCATATTGTGTAAGACCGTAACTGATGGGTTATGAA
1 ATCATATGGAAAAAAGACCATATCATGTAAGACCGCAACTAATAGGTTATGAA
** **
98039227 ATCATATGGAAAAAAGACCATATCATGTAAGATTGCAACTAATAGGTTATGGC
1 ATCATATGGAAAAAAGACCATATCATGTAAGACCGCAACTAATAGGTTATGAA
*
98039280 ATCATATGGGAAAA
1 ATCATATGGAAAAA
98039294 TTAAAGAAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.27
Consensus pattern (53 bp):
ATCATATGGAAAAAAGACCATATCATGTAAGACCGCAACTAATAGGTTATGAA
Found at i:98039475 original size:29 final size:29
Alignment explanation
Indices: 98039440--98039506 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
98039430 TAAAGGACAA
98039440 CCTTTGTGGCAAAACTCTGGA-AATGAAAG
1 CCTTTGTGGCAAAACTCTGGATAA-GAAAG
* *
98039469 CTTTTGTGGCACAACTCTGGATAAGAAAG
1 CCTTTGTGGCAAAACTCTGGATAAGAAAG
98039498 CCTTTGTGG
1 CCTTTGTGG
98039507 TGAGTACTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 32 0.94
30 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (29 bp):
CCTTTGTGGCAAAACTCTGGATAAGAAAG
Found at i:98041143 original size:27 final size:27
Alignment explanation
Indices: 98041113--98041711 Score: 779
Period size: 27 Copynumber: 22.2 Consensus size: 27
98041103 ATTACCAAAG
* *
98041113 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
98041140 TACCATCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
*
98041167 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041194 TACCCTCGATTTAAAAAATTACAGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
98041221 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041248 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
98041275 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
98041302 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
98041329 TACCCTCGATTTAAAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
*
98041356 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
98041383 TACCCTCAATCTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041410 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
98041437 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
98041464 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
98041491 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041518 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041545 TACCCTCTATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041572 TACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
98041599 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
98041626 TACCCTCGATTTAAAAAATTACAATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
98041653 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
98041680 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
98041707 TACCC
1 TACCC
98041712 CTAGGGTGTT
Statistics
Matches: 499, Mismatches: 69, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 496 0.99
28 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:98042079 original size:27 final size:26
Alignment explanation
Indices: 98042041--98042098 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
98042031 ATATATATAC
*
98042041 ATCTGTTCTGGTGGCTCCGCCACAAT
1 ATCTGTTCTGGTGACTCCGCCACAAT
* *
98042067 ATCTGTATCTGGTGACTTCGTCACAAT
1 ATCTGT-TCTGGTGACTCCGCCACAAT
98042094 ATCTG
1 ATCTG
98042099 GCAGCCTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (26 bp):
ATCTGTTCTGGTGACTCCGCCACAAT
Found at i:98042250 original size:31 final size:31
Alignment explanation
Indices: 98042215--98042324 Score: 100
Period size: 31 Copynumber: 3.5 Consensus size: 31
98042205 TTGCATTCAC
*
98042215 ATTCTGATTTTGATTCTATTATCTGATACTG
1 ATTCTGATTCTGATTCTATTATCTGATACTG
* * * * * **
98042246 ATTCTGATTCTAATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTATTATCTGATACTG
98042277 ATTCTGATTCTGATTCTGA-T-TCTG-TCACATG
1 ATTCTGATTCTGATTCT-ATTATCTGAT-AC-TG
98042308 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
98042325 CATTTTGATT
Statistics
Matches: 61, Mismatches: 15, Indels: 6
0.74 0.18 0.07
Matches are distributed among these distances:
29 1 0.02
30 2 0.03
31 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTATCTGATACTG
Found at i:98042254 original size:6 final size:6
Alignment explanation
Indices: 98042215--98042345 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
98042205 TTGCATTCAC
* * *
98042215 ATTCTG ATTTTG ATTCT- ATTATCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG A-T-TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
98042264 -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACATG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
* *
98042314 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
98042346 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 4 0.04
6 79 0.82
7 10 0.10
8 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:98042334 original size:37 final size:37
Alignment explanation
Indices: 98042236--98042336 Score: 139
Period size: 37 Copynumber: 2.7 Consensus size: 37
98042226 GATTCTATTA
* * *
98042236 TCTGATACTGATTCTGATTCTAATTCTGTCACCTAAT
1 TCTGATTCTGATTCTGATTCTGATTCTGTCACATAAT
* *
98042273 TTTGATTCTGATTCTGATTCTGATTCTGTCACATGAT
1 TCTGATTCTGATTCTGATTCTGATTCTGTCACATAAT
* *
98042310 TCTGATTCTGATTCTCATTTTGATTCT
1 TCTGATTCTGATTCTGATTCTGATTCT
98042337 AGTTCTGATA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (37 bp):
TCTGATTCTGATTCTGATTCTGATTCTGTCACATAAT
Found at i:98044481 original size:3 final size:3
Alignment explanation
Indices: 98044473--98044498 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
98044463 TTTTTATTCT
98044473 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
98044499 TTCTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:98052274 original size:71 final size:71
Alignment explanation
Indices: 98052186--98052327 Score: 239
Period size: 71 Copynumber: 2.0 Consensus size: 71
98052176 CGATTAAAAC
* * * *
98052186 TTAATTAGTTAATTATTCTATTTTCTTTGGCTTTATGGGTTTTGTTATTTTTGGACTATTTGTAC
1 TTAATTAGTTAATTATTCTATTTGCTTTGACTTTATGAGTTTTATTATTTTTGGACTATTTGTAC
98052251 ATTTTG
66 ATTTTG
*
98052257 TTAATTAGTTAATTATTCTATTTGCTTTGACTTTATGAGTTTTATTATTTTTGGACTGTTTGTAC
1 TTAATTAGTTAATTATTCTATTTGCTTTGACTTTATGAGTTTTATTATTTTTGGACTATTTGTAC
98052322 ATTTTG
66 ATTTTG
98052328 GGATTGTTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.20, C:0.07, G:0.15, T:0.58
Consensus pattern (71 bp):
TTAATTAGTTAATTATTCTATTTGCTTTGACTTTATGAGTTTTATTATTTTTGGACTATTTGTAC
ATTTTG
Found at i:98053775 original size:2 final size:2
Alignment explanation
Indices: 98053763--98053793 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
98053753 CCAATTCTCA
*
98053763 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98053794 ATCCGATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98057141 original size:26 final size:26
Alignment explanation
Indices: 98057104--98057239 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
98057094 TGATACAAAT
* * *
98057104 TGATAATAGGTTAGGTAACTGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
98057130 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
98057156 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98057182 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98057208 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
98057234 TGATAA
1 TGATAA
98057240 GAATATCATG
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:98059266 original size:136 final size:137
Alignment explanation
Indices: 98059021--98059306 Score: 495
Period size: 136 Copynumber: 2.1 Consensus size: 137
98059011 GAGTAGTCTC
98059021 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
98059086 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTT-TGGCCCAGTAT
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGG-TTATGGCCCAGTAC
98059150 CACTGTTA
130 CACTGTTA
* *
98059158 CCCAAATGGGCTTGCGTATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
98059222 TGTTATCTGAATAAGGGGTTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTATGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTATGGCCCAGTACC
98059287 ACTGTTA
131 ACTGTTA
**
98059294 CCTGAATGGGCTT
1 CCCAAATGGGCTT
98059307 AGGCCCAATA
Statistics
Matches: 142, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
135 2 0.01
136 121 0.85
137 19 0.13
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTATGGCCCAGTACC
ACTGTTA
Found at i:98063139 original size:49 final size:52
Alignment explanation
Indices: 98063086--98063218 Score: 227
Period size: 49 Copynumber: 2.6 Consensus size: 52
98063076 TGATACAAAT
98063086 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATG-TT-A
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
98063135 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
98063187 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
98063219 GAATTCATGT
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
49 33 0.42
50 13 0.16
51 2 0.03
52 31 0.39
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:98063172 original size:26 final size:26
Alignment explanation
Indices: 98063086--98063218 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
98063076 TGATACAAAT
98063086 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98063112 TGATAAT-GGTTAGGTAAATGTT--A
1 TGATAATAGGTTAGGTAAATGTTCCA
98063135 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98063161 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98063187 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98063213 TGATAA
1 TGATAA
98063219 GAATTCATGT
Statistics
Matches: 102, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
23 8 0.08
24 15 0.15
25 15 0.15
26 64 0.63
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:98064728 original size:26 final size:26
Alignment explanation
Indices: 98064699--98064751 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
98064689 TTTACAGTTT
98064699 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
98064725 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
98064751 T
1 T
98064752 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:98065238 original size:133 final size:137
Alignment explanation
Indices: 98064999--98065281 Score: 511
Period size: 133 Copynumber: 2.1 Consensus size: 137
98064989 GAGTAGTCTC
98064999 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
98065064 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGG-CCAGTA-C
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
98065126 ACTGTTA
131 ACTGTTA
*
98065133 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
98065197 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
98065262 ACTGTTA
131 ACTGTTA
**
98065269 CCTGAATGGGCTT
1 CCCAAATGGGCTT
98065282 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
133 95 0.66
134 23 0.16
135 6 0.04
136 19 0.13
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:98066283 original size:27 final size:26
Alignment explanation
Indices: 98066246--98066360 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
98066236 AGCATGGCTG
* *
98066246 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
98066272 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
98066300 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
98066327 CCA-AATCAGATATTTGTGGCATAGCCA
1 CCAGAA-CAGATA-ATGTGGCAGAGCCA
*
98066354 CCGGAAC
1 CCAGAAC
98066361 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
26 7 0.09
27 53 0.67
28 19 0.24
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:98066310 original size:54 final size:54
Alignment explanation
Indices: 98066246--98066360 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
98066236 AGCATGGCTG
* *
98066246 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCGTGGCAGAGCCA
* * * *
98066300 CCAGAACAGATATATGTGGCAGAGCCACCAAATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
*
98066354 CCGGAAC
1 CCAGAAC
98066361 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
Found at i:98067985 original size:26 final size:26
Alignment explanation
Indices: 98067949--98068058 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
98067939 CATGAAATTC
98067949 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
98067975 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
98068001 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
98068027 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
98068053 TTATCA
1 TTATCA
98068059 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:98070957 original size:10 final size:10
Alignment explanation
Indices: 98070939--98070986 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
98070929 ATTTTAGCAT
98070939 TTATCTTTAA
1 TTATCTTTAA
*
98070949 TTGTCTTTAA
1 TTATCTTTAA
*
98070959 TTATCTTTAT
1 TTATCTTTAA
*
98070969 TTAT-TTGTAT
1 TTATCTT-TAA
98070979 TTATCTTT
1 TTATCTTT
98070987 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:98074557 original size:36 final size:36
Alignment explanation
Indices: 98074517--98074588 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
98074507 TATTTTATTA
98074517 ATTATTACTTTATTTTGTTTGGATATTAATAAATTT
1 ATTATTACTTTATTTTGTTTGGATATTAATAAATTT
98074553 ATTATTACTTTATTTTGTTTGGATATTAATAAATTT
1 ATTATTACTTTATTTTGTTTGGATATTAATAAATTT
98074589 CTCTTCTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (36 bp):
ATTATTACTTTATTTTGTTTGGATATTAATAAATTT
Found at i:98075883 original size:20 final size:21
Alignment explanation
Indices: 98075852--98075890 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
98075842 ATTCCTAAGC
98075852 AATAATAATAAAAGAAAAATA
1 AATAATAATAAAAGAAAAATA
*
98075873 AATAA-AATAAAATAAAAA
1 AATAATAATAAAAGAAAAA
98075891 ATGATGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (21 bp):
AATAATAATAAAAGAAAAATA
Found at i:98075890 original size:21 final size:21
Alignment explanation
Indices: 98075852--98075892 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
98075842 ATTCCTAAGC
*
98075852 AATAATAATAAAAGAAAAATA
1 AATAATAATAAAAAAAAAATA
98075873 AATAA-AATAAAATAAAAAAT
1 AATAATAATAAAA-AAAAAAT
98075893 GATGTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AATAATAATAAAAAAAAAATA
Found at i:98078098 original size:12 final size:12
Alignment explanation
Indices: 98078083--98078107 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98078073 AATATACCCG
98078083 TGTATATATATA
1 TGTATATATATA
98078095 TGTATATATATA
1 TGTATATATATA
98078107 T
1 T
98078108 ATATCTATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTATATATATA
Found at i:98079305 original size:17 final size:17
Alignment explanation
Indices: 98079271--98079313 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
98079261 ATATTAAAAT
*
98079271 AAAAAAATAAATTTAAA
1 AAAAAAATAAATTCAAA
**
98079288 AAAAAAATAGGTTCAAA
1 AAAAAAATAAATTCAAA
*
98079305 AAATAAATA
1 AAAAAAATA
98079314 TAGGCAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAAAATAAATTCAAA
Found at i:98080977 original size:1 final size:1
Alignment explanation
Indices: 98080971--98080996 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
98080961 CAACAGAACT
98080971 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
98080997 TCTAACTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:98081671 original size:26 final size:24
Alignment explanation
Indices: 98081641--98081690 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
98081631 AAATAAAAAA
98081641 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAATATAA-AAA-CAAATAT
98081667 ATTTAAAAATATAAAAACAAATAT
1 ATTTAAAAATATAAAAACAAATAT
98081691 TAAAACAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 7 0.29
25 3 0.12
26 14 0.58
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAATATAAAAACAAATAT
Found at i:98081688 original size:12 final size:12
Alignment explanation
Indices: 98081673--98081705 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
98081663 ATATATTTAA
98081673 AAATATAAAAAC
1 AAATATAAAAAC
*
98081685 AAATATTAAAAC
1 AAATATAAAAAC
98081697 AAATA-AAAA
1 AAATATAAAA
98081706 TGATACTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 3 0.16
12 16 0.84
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (12 bp):
AAATATAAAAAC
Found at i:98081700 original size:24 final size:25
Alignment explanation
Indices: 98081645--98081706 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 25
98081635 AAAAAAATTT
**
98081645 AAAAATATAATAAATCAAATATATTT
1 AAAAATATAA-AAATCAAATATATAA
98081671 AAAAATATAAAAA-CAAATAT-TAA
1 AAAAATATAAAAATCAAATATATAA
*
98081694 AACAA-ATAAAAAT
1 AAAAATATAAAAAT
98081707 GATACTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 7 0.22
23 5 0.16
24 7 0.22
25 3 0.09
26 10 0.31
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (25 bp):
AAAAATATAAAAATCAAATATATAA
Found at i:98096381 original size:2 final size:2
Alignment explanation
Indices: 98096374--98096398 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98096364 GTCATAAATG
98096374 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
98096399 GATCATGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98125724 original size:2 final size:2
Alignment explanation
Indices: 98125717--98125745 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
98125707 GTATATTTTC
98125717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98125746 AGTCTATGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98134096 original size:28 final size:28
Alignment explanation
Indices: 98134056--98134110 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
98134046 AGGAGGTTGA
98134056 ATCATCCCTTGATTTAATAAGATCTTAT
1 ATCATCCCTTGATTTAATAAGATCTTAT
98134084 ATCATCCCTTGATTTAATAAGATCTTA
1 ATCATCCCTTGATTTAATAAGATCTTA
98134111 GTTCTATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (28 bp):
ATCATCCCTTGATTTAATAAGATCTTAT
Found at i:98135236 original size:29 final size:31
Alignment explanation
Indices: 98135194--98135260 Score: 111
Period size: 29 Copynumber: 2.2 Consensus size: 31
98135184 AAGTTGTGAG
98135194 TTTAGTCTCTGTACTTTA-AT-TTGATCAAT
1 TTTAGTCTCTGTACTTTACATATTGATCAAT
*
98135223 TTTAGTCTCTGTACTTTACATATTGATTAAT
1 TTTAGTCTCTGTACTTTACATATTGATCAAT
98135254 TTTAGTC
1 TTTAGTC
98135261 ATTATATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 18 0.51
30 2 0.06
31 15 0.43
ACGTcount: A:0.24, C:0.13, G:0.10, T:0.52
Consensus pattern (31 bp):
TTTAGTCTCTGTACTTTACATATTGATCAAT
Found at i:98137102 original size:10 final size:10
Alignment explanation
Indices: 98137087--98137116 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
98137077 ACCTGCGAGA
*
98137087 AGAAAATAAC
1 AGAAAACAAC
98137097 AGAAAACAAC
1 AGAAAACAAC
98137107 AGAAAACAAC
1 AGAAAACAAC
98137117 TCACAGCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.70, C:0.17, G:0.10, T:0.03
Consensus pattern (10 bp):
AGAAAACAAC
Found at i:98141873 original size:31 final size:32
Alignment explanation
Indices: 98141838--98141906 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
98141828 AGGGAAATAT
98141838 AAAATAAAAATTAA-GAAATA-AATTATATTTA
1 AAAATAAAAATTAATGAAATATAATTATA-TTA
* * *
98141869 AAAATGAGAATTAATTAAATATAATTATATTA
1 AAAATAAAAATTAATGAAATATAATTATATTA
98141901 AAAATA
1 AAAATA
98141907 GGTTTAAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 12 0.38
32 13 0.41
33 7 0.22
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (32 bp):
AAAATAAAAATTAATGAAATATAATTATATTA
Found at i:98141905 original size:17 final size:16
Alignment explanation
Indices: 98141847--98141906 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 16
98141837 TAAAATAAAA
98141847 ATTAAGAAATAAATTAT
1 ATTAA-AAATAAATTAT
98141864 ATTTAAAAATGAGAATTA-
1 A-TTAAAAAT-A-AATTAT
*
98141882 ATTAAATAT-AATTAT
1 ATTAAAAATAAATTAT
98141897 ATTAAAAATA
1 ATTAAAAATA
98141907 GGTTTAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
14 5 0.14
15 8 0.22
17 12 0.33
18 6 0.17
19 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (16 bp):
ATTAAAAATAAATTAT
Found at i:98143624 original size:18 final size:18
Alignment explanation
Indices: 98143601--98143637 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
98143591 TGGGACTGCT
98143601 ATAAATAATTGACATTGA
1 ATAAATAATTGACATTGA
98143619 ATAAATAATTGACATTGA
1 ATAAATAATTGACATTGA
98143637 A
1 A
98143638 AATCTTACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.32
Consensus pattern (18 bp):
ATAAATAATTGACATTGA
Found at i:98149973 original size:129 final size:130
Alignment explanation
Indices: 98149580--98149976 Score: 485
Period size: 131 Copynumber: 3.0 Consensus size: 130
98149570 GTTTATCTAA
* * * * * *
98149580 CATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCGTTACTCTAAATAGTTCGCTGATTTAAT
1 CATGAAAAATTTTCTTTGAGTTAGTTGATTTAATATCGCTACTCTAAATAGCTCACTGATTTAAT
* ** * *
98149645 ATCACAACTAATAATGTTAAGAATCGCTGATTTAAAATCACAGCCTAAGTTCATTCGATTTAATA
66 AT-ACAGCTAATAATGTTAAGGCTCGCTGATTTAATATTACAGCCTAAGTTCATTCGATTTAATA
98149710 T
130 T
* * * * * * *
98149711 CATGAAAATTTTTCTTTGAGTTAGTTGATTTAATACCGCTACTTTAATTAACTTATTGATTTAAT
1 CATGAAAAATTTTCTTTGAGTTAGTTGATTTAATATCGCTACTCTAAATAGCTCACTGATTTAAT
* * * * *
98149776 ATTGCAGCTGATAATGTTAAGGCTCG-TCGATTTAATATTACAACCCAAGTTCATTCGATTCAAT
66 A-TACAGCTAATAATGTTAAGGCTCGCT-GATTTAATATTACAGCCTAAGTTCATTCGATTTAAT
98149840 AT
129 AT
* *
98149842 CAT-AAATAATTTTATTTGAGTTAGTTGATTTAATATTGCTACTCTAAATAGCTCACTGATTTAA
1 CATGAAA-AATTTTCTTTGAGTTAGTTGATTTAATATCGCTACTCTAAATAGCTCACTGATTTAA
* * *
98149906 TAT-CAGCTAATAATGTTAAGGCTCGCTAATTTAATATTATAGCCTAAGTTCATTCGATTTAAAA
65 TATACAGCTAATAATGTTAAGGCTCGCTGATTTAATATTACAGCCTAAGTTCATTCGATTTAATA
98149970 T
130 T
98149971 CATGAA
1 CATGAA
98149977 CGATCTCATC
Statistics
Matches: 222, Mismatches: 39, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
129 56 0.25
130 8 0.04
131 157 0.71
132 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (130 bp):
CATGAAAAATTTTCTTTGAGTTAGTTGATTTAATATCGCTACTCTAAATAGCTCACTGATTTAAT
ATACAGCTAATAATGTTAAGGCTCGCTGATTTAATATTACAGCCTAAGTTCATTCGATTTAATAT
Found at i:98157081 original size:2 final size:2
Alignment explanation
Indices: 98157076--98157125 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
98157066 ATAAAAAATA
98157076 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98157118 AT AT AT AT
1 AT AT AT AT
98157126 CAAGTTATAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98159628 original size:5 final size:5
Alignment explanation
Indices: 98159612--98159662 Score: 66
Period size: 5 Copynumber: 9.4 Consensus size: 5
98159602 ATTTCCATTT
98159612 CCACC TCCACC CCACC CCACC CCACCC CCACC CCACCC CCACCC CCACC
1 CCACC -CCACC CCACC CCACC CCA-CC CCACC CCA-CC CCA-CC CCACC
98159661 CC
1 CC
98159663 CACCACAACT
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
5 22 0.51
6 21 0.49
ACGTcount: A:0.18, C:0.80, G:0.00, T:0.02
Consensus pattern (5 bp):
CCACC
Found at i:98159640 original size:11 final size:11
Alignment explanation
Indices: 98159612--98159666 Score: 85
Period size: 11 Copynumber: 5.0 Consensus size: 11
98159602 ATTTCCATTT
*
98159612 CCACCTCCACC
1 CCACCCCCACC
98159623 CCA-CCCCACC
1 CCACCCCCACC
98159633 CCACCCCCACC
1 CCACCCCCACC
98159644 CCACCCCCACCC
1 CCACCCCCA-CC
98159656 CCACCCCCACC
1 CCACCCCCACC
98159667 ACAACTACAG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
10 9 0.22
11 21 0.51
12 11 0.27
ACGTcount: A:0.18, C:0.80, G:0.00, T:0.02
Consensus pattern (11 bp):
CCACCCCCACC
Found at i:98159663 original size:6 final size:6
Alignment explanation
Indices: 98159612--98159666 Score: 73
Period size: 6 Copynumber: 9.8 Consensus size: 6
98159602 ATTTCCATTT
*
98159612 CCACCT CCA-CC CCA-CC CCA-CC CCACCC CCA-CC CCACCC CCACCC
1 CCACCC CCACCC CCACCC CCACCC CCACCC CCACCC CCACCC CCACCC
98159656 CCACCC CCACC
1 CCACCC CCACC
98159667 ACAACTACAG
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
5 19 0.41
6 27 0.59
ACGTcount: A:0.18, C:0.80, G:0.00, T:0.02
Consensus pattern (6 bp):
CCACCC
Found at i:98159778 original size:3 final size:3
Alignment explanation
Indices: 98159772--98159804 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
98159762 TACCACCATT
98159772 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
98159805 ACCACCACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
TCC
Found at i:98164459 original size:26 final size:26
Alignment explanation
Indices: 98164429--98164482 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
98164419 CAATTAACTT
98164429 CTACGTGAAATTATATGCTGAACACC
1 CTACGTGAAATTATATGCTGAACACC
98164455 CTACGTGAAATTATATGCTGAACACC
1 CTACGTGAAATTATATGCTGAACACC
98164481 CT
1 CT
98164483 GGTCCAATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (26 bp):
CTACGTGAAATTATATGCTGAACACC
Found at i:98165017 original size:10 final size:10
Alignment explanation
Indices: 98165002--98165043 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
98164992 TAAATTTAGG
*
98165002 ATTTATTTTT
1 ATTTATCTTT
98165012 ATTTATCTTT
1 ATTTATCTTT
*
98165022 AATTATCTTT
1 ATTTATCTTT
*
98165032 ATTTATATTT
1 ATTTATCTTT
98165042 AT
1 AT
98165044 CTTTTAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:98166617 original size:5 final size:5
Alignment explanation
Indices: 98166602--98166654 Score: 63
Period size: 5 Copynumber: 10.4 Consensus size: 5
98166592 ATGTTGGTTA
* *
98166602 ATATT AAATT ATATT ATATTTT AAATT ATATT A-ATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATA--TT ATATT ATATT ATATT ATATT ATATT ATATT
98166653 AT
1 AT
98166655 TATGAAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 4 0.10
5 33 0.80
7 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:98167069 original size:15 final size:15
Alignment explanation
Indices: 98167049--98167097 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
98167039 TAAGATATAA
98167049 AGAAAAGAAAGAAAC
1 AGAAAAGAAAGAAAC
*
98167064 AGAAAAG-AAGGAA-
1 AGAAAAGAAAGAAAC
*
98167077 AGAACAGAATAGAAAC
1 AGAAAAGAA-AGAAAC
98167093 -GAAAA
1 AGAAAA
98167098 ACAGGGGAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 6 0.22
14 6 0.22
15 15 0.56
ACGTcount: A:0.69, C:0.06, G:0.22, T:0.02
Consensus pattern (15 bp):
AGAAAAGAAAGAAAC
Found at i:98167084 original size:18 final size:19
Alignment explanation
Indices: 98167055--98167090 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
98167045 ATAAAGAAAA
98167055 GAAAGAAACAGAAAAGAAG
1 GAAAGAAACAGAAAAGAAG
*
98167074 GAAAG-AACAGAATAGAA
1 GAAAGAAACAGAAAAGAA
98167091 ACGAAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.67, C:0.06, G:0.25, T:0.03
Consensus pattern (19 bp):
GAAAGAAACAGAAAAGAAG
Found at i:98167549 original size:12 final size:11
Alignment explanation
Indices: 98167529--98167580 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
98167519 GTTAAGATTA
*
98167529 AAATTGAAATT
1 AAATAGAAATT
98167540 AAAGTAGAAATT
1 AAA-TAGAAATT
*
98167552 GAATAGAAATT
1 AAATAGAAATT
*
98167563 GAATAAGAAATTT
1 AAAT-AGAAA-TT
98167576 AAATA
1 AAATA
98167581 TTAAATGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 15 0.43
12 15 0.43
13 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (11 bp):
AAATAGAAATT
Found at i:98167560 original size:11 final size:11
Alignment explanation
Indices: 98167534--98167574 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
98167524 GATTAAAATT
*
98167534 GAAATTAAAGTA
1 GAAATTGAA-TA
98167546 GAAATTGAATA
1 GAAATTGAATA
98167557 GAAATTGAATAA
1 GAAATTGAAT-A
98167569 GAAATT
1 GAAATT
98167575 TAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 12 0.44
12 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:98168784 original size:22 final size:20
Alignment explanation
Indices: 98168759--98168799 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
98168749 ATTAACAAAA
98168759 CAAACAATAGAATATAACTAAT
1 CAAACAA-A-AATATAACTAAT
*
98168781 CAAAGAAAAATATAACTAA
1 CAAACAAAAATATAACTAA
98168800 ATTTTCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 1 0.06
22 6 0.33
ACGTcount: A:0.63, C:0.12, G:0.05, T:0.20
Consensus pattern (20 bp):
CAAACAAAAATATAACTAAT
Found at i:98171734 original size:177 final size:178
Alignment explanation
Indices: 98170962--98171733 Score: 966
Period size: 177 Copynumber: 4.4 Consensus size: 178
98170952 AAATAGGATG
* * ** * *
98170962 GTGGCTTAAATCTGCTCTATTGCTTATACATGGAGATAAGATTCGCCATCCTCGATCTGCTTCAC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
*
98171027 AACTGCTTAG-G-GAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
66 AACTGCTTAGAGAGACA-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
* ** * *
98171090 ACTA-CAATCGCCAACCCACTCTCTTGCTTCCTTAGAGAGATAAGGCTA
130 ACCATCAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * *
98171138 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCATCCTCAATTTGCTCCAC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
* * * **
98171203 AACTGCTTAAAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGTTACCTCAAAAAGATAAG-
66 AACTGCTTAGAGAGACAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
* * * * *
98171267 CC-TACAATCGCCAATCTGCTTTTTTGCTACGTCAGAGAGATAATGCTA
131 CCAT-CAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * * * * *
98171315 GTGACTAAAATCTGCTTCATTGCCGATACATGGAGATAAGATTCGCCGTATTCGATTTGCTTCTC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
* * * * *
98171380 AACTGCTTAGGGAG-CTAAGATCTACAATCATCAGTCTGCTTCGTTCCTACCTCAGGAAGATAAG
66 AACTGCTTAGAGAGAC-AAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
* ** * *
98171444 ACCA-CCATCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGTTA
130 ACCATCAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * *
98171492 GTGGCTAAAATCTGCTCCATTGCTGATACATGGAGATAAGATTCCCCATCTTCGATCTACTCCAC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
* * *
98171557 TACTGCTTAGAGAGACAAGATCTTCAATCTTCAGTCTGCTTCCTTGTTACCTTAGGAAGATAAGA
66 AACTGCTTAGAGAGACAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
**
98171622 CCATC-ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
131 CCATCAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * *
98171669 GCGGCTAAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTTGGTCTGCTCCAC
1 GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
98171734 TGCAACTTCA
Statistics
Matches: 510, Mismatches: 77, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
176 67 0.13
177 436 0.85
178 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (178 bp):
GTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
AACTGCTTAGAGAGACAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
CCATCAATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
Found at i:98172008 original size:64 final size:64
Alignment explanation
Indices: 98171821--98172013 Score: 314
Period size: 64 Copynumber: 3.0 Consensus size: 64
98171811 TTCATGTATC
* * * * *
98171821 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATAAATCAAATACTCATAATTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* *
98171885 ATGCTGATGTCAAATAATTAGGATGTTAATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCT-ATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
98171950 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
98172014 CTATGAATGA
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
64 62 0.52
65 57 0.48
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:98173136 original size:18 final size:17
Alignment explanation
Indices: 98173095--98173136 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
98173085 TTTTTTAAAA
98173095 TTTTTTTCATTTGATTT
1 TTTTTTTCATTTGATTT
*
98173112 TGATTTTTCATTTCGATTT
1 T-TTTTTTCATTT-GATTT
98173131 TTTTTT
1 TTTTTT
98173137 AAGGTCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 14 0.67
19 6 0.29
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.74
Consensus pattern (17 bp):
TTTTTTTCATTTGATTT
Found at i:98178129 original size:22 final size:20
Alignment explanation
Indices: 98178104--98178144 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
98178094 ATTAACAAAA
98178104 CAAACAATAGAATATAACTAAT
1 CAAACAA-A-AATATAACTAAT
*
98178126 CAAAGAAAAATATAACTAA
1 CAAACAAAAATATAACTAA
98178145 ATTTTCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 1 0.06
22 6 0.33
ACGTcount: A:0.63, C:0.12, G:0.05, T:0.20
Consensus pattern (20 bp):
CAAACAAAAATATAACTAAT
Found at i:98178645 original size:26 final size:30
Alignment explanation
Indices: 98178594--98178648 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
98178584 ACATAAATAA
98178594 ATTTAAAAGAAGAGATATATATACATAAAG
1 ATTTAAAAGAAGAGATATATATACATAAAG
98178624 ATTTAAAAGAA-A-ATAT-T-TACATAAA
1 ATTTAAAAGAAGAGATATATATACATAAA
98178649 ATAATATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 8 0.32
27 1 0.04
28 4 0.16
29 1 0.04
30 11 0.44
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (30 bp):
ATTTAAAAGAAGAGATATATATACATAAAG
Found at i:98178773 original size:22 final size:21
Alignment explanation
Indices: 98178748--98178800 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
98178738 GTAAAAAAAT
*
98178748 AATTTTATGAAGAAACAATATA
1 AATTATATGAA-AAACAATATA
**
98178770 AATTATATTCAAAACAATATA
1 AATTATATGAAAAACAATATA
*
98178791 TA-TATATGAA
1 AATTATATGAA
98178801 TAAATAATGT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 6 0.24
21 11 0.44
22 8 0.32
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (21 bp):
AATTATATGAAAAACAATATA
Found at i:98180291 original size:24 final size:23
Alignment explanation
Indices: 98180263--98180317 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
98180253 AATTGAAATC
*
98180263 GATTGATTTGGTATGTGATAAATTT
1 GATTGATTT-ATATG-GATAAATTT
*
98180288 -ATTGAATTTATATGGATATATTT
1 GATTG-ATTTATATGGATAAATTT
98180311 GATTGAT
1 GATTGAT
98180318 GTGGAAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 10 0.38
24 12 0.46
25 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (23 bp):
GATTGATTTATATGGATAAATTT
Found at i:98180906 original size:48 final size:48
Alignment explanation
Indices: 98180853--98180955 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
98180843 TCTCTAATGG
* *
98180853 TTGACTGTTACTGAATAATAAAGATCAATTGATCGCTACTGAAAAATA
1 TTGACTGTTACTGAATAATAAAGATAAATTGATCGATACTGAAAAATA
* * ** * *
98180901 TTGACTGTTACTGACTGATATTGATAAATTGATTGATATTGAAAAATA
1 TTGACTGTTACTGAATAATAAAGATAAATTGATCGATACTGAAAAATA
98180949 TTGACTG
1 TTGACTG
98180956 ATATTGACCT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (48 bp):
TTGACTGTTACTGAATAATAAAGATAAATTGATCGATACTGAAAAATA
Found at i:98180939 original size:18 final size:19
Alignment explanation
Indices: 98180912--98180962 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
98180902 TGACTGTTAC
*
98180912 TGACTGATATTGATAA-AT
1 TGACTGATATTGAAAATAT
*
98180930 TGATTGATATTGAAAAATAT
1 TGACTGATATTG-AAAATAT
98180950 TGACTGATATTGA
1 TGACTGATATTGA
98180963 CCTTGGAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.39
19 4 0.14
20 13 0.46
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (19 bp):
TGACTGATATTGAAAATAT
Found at i:98180959 original size:10 final size:10
Alignment explanation
Indices: 98180898--98180963 Score: 55
Period size: 10 Copynumber: 6.8 Consensus size: 10
98180888 CTACTGAAAA
98180898 ATATTGACTG
1 ATATTGACTG
* *
98180908 TTACTGACTG
1 ATATTGACTG
98180918 ATATTGA-T-
1 ATATTGACTG
* *
98180926 AAATTGATTG
1 ATATTGACTG
***
98180936 ATATTGAAAA
1 ATATTGACTG
98180946 ATATTGACTG
1 ATATTGACTG
98180956 ATATTGAC
1 ATATTGAC
98180964 CTTGGAATAA
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
8 6 0.14
9 2 0.05
10 34 0.81
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (10 bp):
ATATTGACTG
Found at i:98184730 original size:17 final size:16
Alignment explanation
Indices: 98184697--98184743 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
98184687 AAACCTTTCC
98184697 TATTTTATTTT-TGAAT
1 TATTTTATTTTAT-AAT
98184713 TATTTATATTTTATAAT
1 TATTT-TATTTTATAAT
*
98184730 TTTTTTATTTTATA
1 TATTTTATTTTATA
98184744 TAATTGATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.50
17 13 0.46
18 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (16 bp):
TATTTTATTTTATAAT
Found at i:98185789 original size:25 final size:24
Alignment explanation
Indices: 98185747--98185794 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
98185737 ATTAATTAAT
98185747 TTTTTAAAAATTAAAAATATATTTC
1 TTTTTAAAAATTAAAAAT-TATTTC
98185772 TTTTTAAAAAGTT-AAAATTATTT
1 TTTTTAAAAA-TTAAAAATTATTT
98185795 AAAAGTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.23
25 15 0.68
26 2 0.09
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTTTAAAAATTAAAAATTATTTC
Found at i:98194486 original size:3 final size:3
Alignment explanation
Indices: 98194478--98194512 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
98194468 GTTTCCAACA
98194478 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
98194513 GTGGATAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:98194660 original size:11 final size:11
Alignment explanation
Indices: 98194652--98194685 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
98194642 CAGTAAAACC
98194652 ATAAAAAAAAA
1 ATAAAAAAAAA
98194663 AT-AAAAAAAA
1 ATAAAAAAAAA
98194673 ATAATAAAAAAA
1 ATAA-AAAAAAA
98194685 A
1 A
98194686 CATTTGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
11 3 0.14
12 8 0.38
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (11 bp):
ATAAAAAAAAA
Found at i:98194670 original size:13 final size:13
Alignment explanation
Indices: 98194654--98194685 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
98194644 GTAAAACCAT
98194654 AAAAAAAAAATAA
1 AAAAAAAAAATAA
*
98194667 AAAAAAATAATAA
1 AAAAAAAAAATAA
98194680 AAAAAA
1 AAAAAA
98194686 CATTTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (13 bp):
AAAAAAAAAATAA
Found at i:98209119 original size:75 final size:75
Alignment explanation
Indices: 98209031--98209169 Score: 224
Period size: 75 Copynumber: 1.9 Consensus size: 75
98209021 TTCTGTTTTT
* ** *
98209031 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGAATTTTCAATTTT
98209096 TATCTTTCAA
66 TATCTTTCAA
* *
98209106 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCCGAGGAATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGAATTTTCAATTT
98209170 ATGCTGTTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 58 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGAATTTTCAATTTT
TATCTTTCAA
Found at i:98209265 original size:102 final size:103
Alignment explanation
Indices: 98209085--98209271 Score: 304
Period size: 102 Copynumber: 1.8 Consensus size: 103
98209075 CGTTGAGGTA
* *
98209085 TTTTCAATTTTTATCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTATATCTTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
98209150 CGCCGAGGAATTTTCAATTTATGCTGTTCAATTTCTGTT
65 CGCCGAGGAATTTTCAATTTATGCTGTTCAATTTCTGTT
* *
98209189 TTTTCAATTTATATTTTTC-AGAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTATATCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
* *
98209253 GCTGAGGTATTTTCAATTT
66 GCCGAGGAATTTTCAATTT
98209272 CTGTTTTTTT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 60 0.78
104 17 0.22
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (103 bp):
TTTTCAATTTATATCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
GCCGAGGAATTTTCAATTTATGCTGTTCAATTTCTGTT
Found at i:98209294 original size:16 final size:16
Alignment explanation
Indices: 98209262--98209295 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98209252 CGCTGAGGTA
* *
98209262 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
98209278 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
98209294 TT
1 TT
98209296 CAGAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:98209326 original size:89 final size:90
Alignment explanation
Indices: 98209176--98209447 Score: 358
Period size: 88 Copynumber: 3.1 Consensus size: 90
98209166 ATTTATGCTG
*
98209176 TTCAATTTCTG-TTTTTTCAATTTATATTTTTCAGAAATCAACTCATATTGCGAGAAGTGAGTTG
1 TTCAATTTCTGTTTTTTTCAATTTATATTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTG
*
98209240 AGCCTCAGG-ACACG-CTGAGGTATT
66 AGCCTCAGGCACATGTC-GAGGTATT
* *
98209264 TTCAATTTCTGTTTTTTTCAATTTATATTTTTCAGAAATTAACTCATATCGCGAGAGGTGAGTTG
1 TTCAATTTCTGTTTTTTTCAATTTATATTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
98209329 ATCCTCGGGTCACATGTCGAGGTATT
66 AGCCTCAGG-CACATGTCGAGGTATT
** ** * * *
98209355 TTCAAAATC--TACTTTTCAAATTA-AGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTCAATTTCTGTTTTTTTCAATTTATATTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTG
98209417 AGCCTCAGGTCACATGTCGAGGTATT
66 AGCCTCAGG-CACATGTCGAGGTATT
98209443 TTCAA
1 TTCAA
98209448 AATCTTCTTT
Statistics
Matches: 163, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
88 75 0.46
89 68 0.42
91 19 0.12
92 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (90 bp):
TTCAATTTCTGTTTTTTTCAATTTATATTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGCACATGTCGAGGTATT
Found at i:98209408 original size:88 final size:87
Alignment explanation
Indices: 98209188--98209496 Score: 332
Period size: 88 Copynumber: 3.6 Consensus size: 87
98209178 CAATTTCTGT
* * *
98209188 TTTTTCAATTTATATTTTTCAGAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--AC
1 TTTTTCAATTTATAGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* **
98209251 ACG-CTGAGGTATTTTCAATTTC
66 ATGTC-GAGGTATTTTCAAAATC
* * * * * *
98209273 TGTTTTTTTCAATTTATATTTTTCAGAAATTAACTCATATCGCGAGAGGTGAGTTGATCCTCGGG
1 ----TTTTTCAATTTATAGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
98209338 TCACATGTCGAGGTATTTTCAAAATC
62 TCACATGTCGAGGTATTTTCAAAATC
*
98209364 TACTTTTCAAATTA-AGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
1 T--TTTTCAATTTATAGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
98209428 ACATGTCGAGGTATTTTCAAAATC
64 ACATGTCGAGGTATTTTCAAAATC
* * * *
98209452 ---TTC-TTTTA-AG-TTTCAAAAACCAACTCATACTGTGAGAGGTGAGTT
1 TTTTTCAATTTATAGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
98209497 AAGCTTTGGC
Statistics
Matches: 195, Mismatches: 20, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
81 32 0.16
82 5 0.03
83 3 0.02
87 1 0.01
88 68 0.35
89 66 0.34
91 19 0.10
92 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (87 bp):
TTTTTCAATTTATAGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
ATGTCGAGGTATTTTCAAAATC
Found at i:98214419 original size:33 final size:31
Alignment explanation
Indices: 98214368--98214442 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 31
98214358 ATTTTCATTG
* *
98214368 TTATTTTTTGAATAATTATTTTTCACTTATTA
1 TTATTTTTT-AATAATTATCTTTCAATTATTA
98214400 TTATTTTTTAATTACATTATCTTTCAATTATTA
1 TTATTTTTTAA-TA-ATTATCTTTCAATTATTA
*
98214433 TTCTTTTTTA
1 TTATTTTTTA
98214443 TTTTTTACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 2 0.05
32 11 0.29
33 25 0.66
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (31 bp):
TTATTTTTTAATAATTATCTTTCAATTATTA
Found at i:98215200 original size:17 final size:18
Alignment explanation
Indices: 98215164--98215201 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
98215154 CAAAAAAAAA
*
98215164 TAATTTTAACACTTCATT
1 TAATTTTAACACCTCATT
*
98215182 TAATTTT-ACACCTCTTT
1 TAATTTTAACACCTCATT
98215199 TAA
1 TAA
98215202 CCCTTAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTTTAACACCTCATT
Found at i:98215348 original size:24 final size:25
Alignment explanation
Indices: 98215313--98215362 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
98215303 AAAAATCAAA
*
98215313 TATTATAGAAT-ATTATTATAATTT
1 TATTATAGAATAAATATTATAATTT
*
98215337 TATTATTA-AATAAATATTATATTTT
1 TATTA-TAGAATAAATATTATAATTT
98215362 T
1 T
98215363 CTGAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TATTATAGAATAAATATTATAATTT
Found at i:98223188 original size:14 final size:14
Alignment explanation
Indices: 98223169--98223201 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
98223159 GAATCGAGTG
98223169 AAATTGTTCAAGTT
1 AAATTGTTCAAGTT
*
98223183 AAATTGTTCGAGTT
1 AAATTGTTCAAGTT
98223197 AAATT
1 AAATT
98223202 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (14 bp):
AAATTGTTCAAGTT
Found at i:98224799 original size:24 final size:26
Alignment explanation
Indices: 98224739--98224807 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 26
98224729 AAAAATCTAT
98224739 ACCCTAAACTCTAAAAACCCTTAAAAGA
1 ACCCTAAACTCT--AAACCCTTAAAAGA
* *
98224767 ACTCAAAACTCT-AACCC-TAAAAGA
1 ACCCTAAACTCTAAACCCTTAAAAGA
*
98224791 ACCCTAAAC-ATAAACCC
1 ACCCTAAACTCTAAACCC
98224808 AAAAAATAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 1 0.03
24 19 0.54
25 5 0.14
28 10 0.29
ACGTcount: A:0.49, C:0.32, G:0.03, T:0.16
Consensus pattern (26 bp):
ACCCTAAACTCTAAACCCTTAAAAGA
Found at i:98225437 original size:6 final size:6
Alignment explanation
Indices: 98225422--98225451 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
98225412 TACAAACACT
98225422 TTTTTC -TTTTC TTTTTC TTTTTC TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T
98225452 ATGCAGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:98235259 original size:21 final size:21
Alignment explanation
Indices: 98235233--98235273 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98235223 AGACAAGCGA
* *
98235233 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
98235254 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
98235274 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:98239629 original size:33 final size:29
Alignment explanation
Indices: 98239570--98239638 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 29
98239560 AAGAAAATAT
*
98239570 ATATATATATATATAATAATAGTATTAGAA
1 ATATATATATATATAATAATAATATTA-AA
*
98239600 ATCATATAGTATATATAACTGATAATATTAAA
1 AT-ATATA-TATATATAA-TAATAATATTAAA
98239632 ATATATA
1 ATATATA
98239639 CATAATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 2 0.06
31 10 0.29
32 13 0.38
33 9 0.26
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (29 bp):
ATATATATATATATAATAATAATATTAAA
Found at i:98239862 original size:3 final size:3
Alignment explanation
Indices: 98239854--98239918 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
98239844 ACAAGGATAT
98239854 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
98239902 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
98239919 GAAACACAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:98240026 original size:3 final size:3
Alignment explanation
Indices: 98240018--98240054 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
98240008 AATGTATTTC
98240018 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
98240055 TTGAAATGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:98240548 original size:11 final size:11
Alignment explanation
Indices: 98240532--98240566 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
98240522 GAAAAAAAAA
98240532 GAAGAGAGAGG
1 GAAGAGAGAGG
98240543 GAAGAGAGAGG
1 GAAGAGAGAGG
98240554 G-AGAGAGAAGG
1 GAAGAGAG-AGG
98240565 GA
1 GA
98240567 GGGGAATCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAGG
Found at i:98240677 original size:12 final size:12
Alignment explanation
Indices: 98240660--98240702 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
98240650 AAAGGTAAAT
98240660 TTTTTTTGTATA
1 TTTTTTTGTATA
98240672 TTTTTTTGTATA
1 TTTTTTTGTATA
*
98240684 TCTTTTTGTATA
1 TTTTTTTGTATA
98240696 TTTTTTT
1 TTTTTTT
98240703 TATGTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:98241495 original size:44 final size:44
Alignment explanation
Indices: 98241432--98241530 Score: 101
Period size: 44 Copynumber: 2.2 Consensus size: 44
98241422 TGCATCTTCT
* * *
98241432 GATATATGCTTTGTGGCTTCAATCCACTTTAATGTAACTTCA-A
1 GATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
* ** * *
98241475 GGATATAAGATTTGTAGCTTCGATCTGCTTTACTGTGACTTCAGA
1 -GATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
*
98241520 AATATAAGATT
1 GATATAAGATT
98241531 AACAGCTTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (44 bp):
GATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
Found at i:98242060 original size:72 final size:72
Alignment explanation
Indices: 98241923--98242357 Score: 457
Period size: 72 Copynumber: 5.8 Consensus size: 72
98241913 CATGTGAACC
* * *
98241923 GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAA
98241988 CGTGTCTT
65 CGTGTCTT
**
98241996 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
98242061 GTGTCTT
66 GTGTCTT
*
98242068 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
98242133 GTGTCTT
66 GTGTCTT
* *
98242140 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGACGAACAGAAATTGAAA-AACAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTAC-----
* * *
98242203 TTGAAAATACCTCAG-CGTGT
60 CT---CA-ACGT--GTC-T-T
* * * *
98242223 GA-GCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAAT
1 GAGGCTCA-ACT-----CACCTCTCGCAATATGAGTTGA--ATTTTGA-AAACAGAAATTGAAAT
*
98242287 TACCTCAACGTGTCCT
57 TACCTCAACGTGTCTT
*
98242303 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGACGAACAGAAATTGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAA
98242358 AACAGAAATT
Statistics
Matches: 309, Mismatches: 27, Indels: 53
0.79 0.07 0.14
Matches are distributed among these distances:
71 8 0.03
72 172 0.56
73 30 0.10
75 21 0.07
76 1 0.00
79 1 0.00
80 9 0.03
81 6 0.02
82 7 0.02
83 9 0.03
84 1 0.00
87 1 0.00
88 21 0.07
91 20 0.06
92 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
GTGTCTT
Found at i:98242198 original size:14 final size:14
Alignment explanation
Indices: 98242181--98242209 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98242171 GATTTTGACG
98242181 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98242195 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98242209 A
1 A
98242210 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:98242308 original size:163 final size:163
Alignment explanation
Indices: 98242035--98243221 Score: 1746
Period size: 163 Copynumber: 7.5 Consensus size: 163
98242025 TTGAATTTTG
* * *
98242035 AAAACAGAAATTGAAATTACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-TGAGACTCAACTCACCTCTCGCAATATGAG
* * *
98242097 TTGA--TTTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
65 TTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
98242159 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
130 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
98242193 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
98242258 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
98242323 CAATATGAGTTGATTTTGACGAACAGAAATTGA
131 CAATATGAGTTGATTTTGACGAACAGAAATTGA
*
98242356 AAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
*
98242421 TAATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
***
98242486 CAATATGAGTTGATTTT---------TTTTTGA
131 CAATATGAGTTGATTTTGACGAACAGAAATTGA
* * * * * * *
98242510 AAGACAGAAATTGAGAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
* * **
98242575 TGATTTTTTTGA-AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
66 TGATTTTTTTGATGAACAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
*
98242638 GCAATATGAGTTGA-ATT------------TTG-
130 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
* * *
98242658 AAAACAGAAATTGAAATTACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-TGAGACTCAACTCACCTCTCGCAATATGAG
* * *
98242720 TTGA--TTTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
65 TTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
98242782 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
130 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
98242816 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
98242881 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
98242946 CAATATGAGTTGATTTTGACGAACAGAAATTGA
131 CAATATGAGTTGATTTTGACGAACAGAAATTGA
* *
98242979 AAAACAGAAATTGGAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
98243044 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
*
98243109 CAATATGAGTTGATTTTTTTTGATGAACAGAAATTGA
131 CAATATGAGTTGA----TTTTGACGAACAGAAATTGA
* *
98243146 AAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
98243211 TGATTTTTTTG
66 TGATTTTTTTG
98243222 GTAGAATTTG
Statistics
Matches: 949, Mismatches: 47, Indels: 57
0.90 0.04 0.05
Matches are distributed among these distances:
143 3 0.00
144 65 0.07
145 3 0.00
146 32 0.03
148 25 0.03
149 3 0.00
152 2 0.00
153 56 0.06
154 76 0.08
157 3 0.00
158 56 0.06
160 66 0.07
161 2 0.00
162 14 0.01
163 450 0.47
167 93 0.10
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (163 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTGACGAACAGAAATTGA
Found at i:98242361 original size:14 final size:14
Alignment explanation
Indices: 98242344--98242372 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98242334 GATTTTGACG
98242344 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98242358 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98242372 A
1 A
98242373 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:98242683 original size:72 final size:72
Alignment explanation
Indices: 98242356--98242980 Score: 557
Period size: 72 Copynumber: 8.2 Consensus size: 72
98242346 CAGAAATTGA
* * * *
98242356 AAAACAGAAATTGAAAATACCTCAGCGCGTGAGC-TGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCACCTCTCGCAATATGAG
98242420 TT-AATTTTTTTG
63 TTGAA---TTTTG
* * *
98242432 ATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
98242497 GATTTTTTTTTG
65 GA----ATTTTG
* * * *
98242509 AAAGACAGAAATTGAGAA-TACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATA
1 AAA-ACAGAAATTGA-AATTACCTCA--ACGTG-TCTTGAGGCTCAACTCACCTCTCGCAATATG
*
98242572 AGTTGATTTTTTTG
61 AGTTGA--ATTTTG
* **
98242586 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
98242651 AATTTTG
66 AATTTTG
98242658 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
98242723 ATTTTTG
66 AATTTTG
98242730 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
98242795 -ATTTTG
66 AATTTTG
* * * * * *
98242801 ACGAACAGAAATTGAAA-AACAGAAATTGAAAATACCTCAG-CGTGTGA-GCTGAGACTCAACTC
1 A-AAACAGAAATTGAAATTAC-----CT---CA-ACGT--GTC-T-TGAGGCTCA-ACT-----C
*
98242863 ACCTCTCGCAATATGAGTTGATTTTTTTG
46 ACCTCTCGCAATATGAGTTGA--ATTTTG
* * *
98242892 ATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
98242957 G-ATTTTG
65 GAATTTTG
*
98242964 ACGAACAGAAATTGAAA
1 A-AAACAGAAATTGAAA
98242981 AACAGAAATT
Statistics
Matches: 466, Mismatches: 43, Indels: 84
0.79 0.07 0.14
Matches are distributed among these distances:
71 8 0.02
72 172 0.37
73 1 0.00
74 35 0.08
75 58 0.12
76 22 0.05
77 54 0.12
78 2 0.00
79 37 0.08
80 10 0.02
81 6 0.01
82 7 0.02
83 9 0.02
84 1 0.00
87 1 0.00
88 21 0.05
91 20 0.04
92 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
AATTTTG
Found at i:98242821 original size:14 final size:14
Alignment explanation
Indices: 98242804--98242832 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98242794 GATTTTGACG
98242804 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98242818 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98242832 A
1 A
98242833 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:98243062 original size:623 final size:623
Alignment explanation
Indices: 98241840--98243221 Score: 2532
Period size: 623 Copynumber: 2.2 Consensus size: 623
98241830 AGTGTGTGAT
* *
98241840 CTGAAGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGACAGAAATTGAGAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTTGAAAGACAGAAATTGAGAA
98241905 TACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAAACA
64 TACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACA
98241969 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
129 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
98242034 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
194 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
98242099 GATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
259 GATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
98242164 ATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTG
324 ATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTG
98242229 AGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCA
389 AGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCA
98242294 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAA
454 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAA
98242359 ACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAA
519 ACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAA
98242424 TTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
584 TTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
98242464 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAGAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAGAATA
98242529 CCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGA
66 CCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGA
98242594 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
131 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
98242659 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
196 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
98242724 TTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
261 TTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
98242789 GAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAG
326 GAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAG
98242854 ACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAAC
391 ACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAAC
98242919 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAAC
456 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAAC
* *
98242984 AGAAATTGGAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATT
521 AGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAATT
98243049 TTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
586 TTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
98243087 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGATGAACAGAAATTGAAAAACA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT--T-----GAAA--G----ACA
* ** * * *
98243152 GAAATTGAAAATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
53 GAAATTGAGAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
98243217 TTTTG
118 TTTTG
98243222 GTAGAATTTG
Statistics
Matches: 734, Mismatches: 10, Indels: 16
0.97 0.01 0.02
Matches are distributed among these distances:
622 79 0.11
623 549 0.75
624 33 0.04
625 1 0.00
630 4 0.01
632 1 0.00
636 67 0.09
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (623 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAGAATA
CCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGA
AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAG
ACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAAC
GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAAC
AGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAATT
TTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
Found at i:98243151 original size:14 final size:14
Alignment explanation
Indices: 98243134--98243162 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98243124 TTTTTTGATG
98243134 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98243148 AACAGAAATTGAAA
1 AACAGAAATTGAAA
98243162 A
1 A
98243163 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:98255676 original size:31 final size:30
Alignment explanation
Indices: 98255604--98255676 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 30
98255594 TGGTACTAAG
*
98255604 AAAATATATATATATATAAATAATAGTATT
1 AAAATATATATATATATAAATAATAATATT
* *
98255634 AGAAATCATATAGTATATATAACTGATAATATT
1 A-AAAT-ATATA-TATATATAAATAATAATATT
98255667 AAAATATATA
1 AAAATATATA
98255677 CATAATATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.03
31 9 0.24
32 9 0.24
33 18 0.49
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (30 bp):
AAAATATATATATATATAAATAATAATATT
Found at i:98255900 original size:3 final size:3
Alignment explanation
Indices: 98255892--98255950 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
98255882 ACAAGGATAT
98255892 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
98255940 ATA ATA ATA AT
1 ATA ATA ATA AT
98255951 TGAAACACAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:98256057 original size:3 final size:3
Alignment explanation
Indices: 98256049--98256082 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
98256039 AATGTATTTC
98256049 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
98256083 TTGAAATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:98256572 original size:11 final size:11
Alignment explanation
Indices: 98256556--98256589 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
98256546 AAGAAAAAAA
98256556 AAGAGAGAGGG
1 AAGAGAGAGGG
98256567 AAGAGAGAGGG
1 AAGAGAGAGGG
98256578 -AGAGAGAAGGG
1 AAGAGAG-AGGG
98256589 A
1 A
98256590 GGGAATCCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (11 bp):
AAGAGAGAGGG
Found at i:98256721 original size:11 final size:11
Alignment explanation
Indices: 98256688--98256712 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98256678 AAAAAAAAAA
98256688 TTTGTATATTT
1 TTTGTATATTT
98256699 TTTGTATATTT
1 TTTGTATATTT
98256710 TTT
1 TTT
98256713 TTATGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTGTATATTT
Found at i:98257136 original size:35 final size:35
Alignment explanation
Indices: 98257096--98257166 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
98257086 GGAGTGTGTG
*
98257096 ATGGTGTTGGTGGCAGACAGCATGGGAGAATGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
*
98257131 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
98257166 A
1 A
98257167 GAGGCAAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.46, T:0.18
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
Found at i:98259304 original size:39 final size:39
Alignment explanation
Indices: 98259250--98259412 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
98259240 TGTGAATGAA
98259250 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
98259289 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** * *
98259328 TGTGCGAGCTATGATATCCGAGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
98259367 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
98259407 TGTGCG
1 TGTGCG
98259413 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:98259428 original size:40 final size:39
Alignment explanation
Indices: 98259250--98259442 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
98259240 TGTGAATGAA
* *
98259250 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
98259289 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
98259328 TGTGCGAGCTATGATATCCGAGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
98259367 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
98259407 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
98259443 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:98261564 original size:13 final size:13
Alignment explanation
Indices: 98261542--98261575 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
98261532 ATCGTGTGAA
98261542 GGACACGGGCTAG
1 GGACACGGGCTAG
*
98261555 GGACATGGGCTAG
1 GGACACGGGCTAG
98261568 GGACACGG
1 GGACACGG
98261576 ACGTGTGCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.47, T:0.09
Consensus pattern (13 bp):
GGACACGGGCTAG
Found at i:98262013 original size:48 final size:48
Alignment explanation
Indices: 98261952--98262315 Score: 466
Period size: 48 Copynumber: 7.6 Consensus size: 48
98261942 CAATGTGTCT
* * *
98261952 GTGTAAGACCATGTCTGGGACATGGCATCTGCAATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* * * * *
98262000 GTGTAAGACCATGTCTGGGACATGGTACCGGTGATGATATATGTACCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* * *
98262048 GTGTAAGACCATGTCTGGGACATGGTATCAGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* *
98262096 GTGAAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* *
98262144 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATATTCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* *
98262192 GTGTAAGACCATGTC-GAGGACATGGCATCGGTGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTG-GGACATGGCATCGGCGATGATATATGTGCCA
* ** * *
98262240 GTGTAAGACTATGTCTGGGACATGGCATCGTTGATGATATGTG-GATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG--CCA
98262289 -TGTAAGACCATGTC-GAGGACATGGCAT
1 GTGTAAGACCATGTCTG-GGACATGGCAT
98262316 TGGTACTTTA
Statistics
Matches: 284, Mismatches: 27, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
47 3 0.01
48 278 0.98
49 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
Found at i:98264834 original size:46 final size:46
Alignment explanation
Indices: 98264777--98265094 Score: 154
Period size: 46 Copynumber: 6.7 Consensus size: 46
98264767 TCATTTGTGT
*
98264777 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCACATTA-GA
* *
98264823 GAGCCAGTGTAAGACCATGTCTGGGACCTGGCATC-G--GCATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCACATT-AGA
* * * **
98264868 CGAGTGCTAGTGTAAGACATGTCTAGGACAT-GCATCAGCCTCAGGACGTA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCACATTA-G-A
* * ** * *
98264918 -AGCCAGTATAAGACAGGTCTGGGACAT-GCATTGGCTAC--GAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCACATTAGA
* ** *
98264960 TGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGGTTATGTGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCAC-ATTA---GA
* * * * *
98265011 AAGCCAGTGTAAGCCTATGTCTGGGACATGGCATCGGCCTCA-AAGA
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCAGCCACATTAGA
* * *
98265057 TGATAGCCAGTATAAGATCATGTTTGGGGCATGGCATC
1 -G--AGCCAGTGTAAGA-CATGTCTGGGACATGGCATC
98265095 GGCACTTCAC
Statistics
Matches: 205, Mismatches: 40, Indels: 51
0.69 0.14 0.17
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.05
45 21 0.10
46 57 0.28
47 27 0.13
48 19 0.09
49 33 0.16
50 31 0.15
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCACATTAGA
Found at i:98265015 original size:94 final size:93
Alignment explanation
Indices: 98264779--98265048 Score: 272
Period size: 94 Copynumber: 2.9 Consensus size: 93
98264769 ATTTGTGTGA
* *
98264779 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTA-TGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGGTTAGTGAAAGCCAGTGTAAGA-CATG
*
98264842 TCTGGGACCTGGCATCGGCATTGAGACGAGT
65 TCTGGGACAT-GCATCGGCA-TGAGACGAGT
* * * *
98264873 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCAGG--ACGT--AAGCCAGTATAAGACAG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-GGTTA-GTGAAAGCCAGTGTAAGACAT
*
98264934 GTCTGGGACATGCATTGGC-T-ACGA-GATGT
64 GTCTGGGACATGCATCGGCATGA-GACGA-GT
* *
98264963 GTTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGGTTATGTGAAAGCCAGTGTAAGCCT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACGGTTA-GTGAAAGCCAGTGTAAGAC-
98265027 ATGTCTGGGACATGGCATCGGC
62 ATGTCTGGGACAT-GCATCGGC
98265049 CTCAAAGATG
Statistics
Matches: 146, Mismatches: 16, Indels: 26
0.78 0.09 0.14
Matches are distributed among these distances:
89 3 0.02
90 18 0.12
91 15 0.10
92 17 0.12
93 12 0.08
94 61 0.42
95 12 0.08
96 8 0.05
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGGTTAGTGAAAGCCAGTGTAAGACATGT
CTGGGACATGCATCGGCATGAGACGAGT
Done.