Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 34 of 427
Found at i:8667365 original size:44 final size:44
Alignment explanation
Indices: 8667290--8667493 Score: 254
Period size: 44 Copynumber: 4.7 Consensus size: 44
8667280 TCTTGGTCTA
* * * *
8667290 TAGCGGCGCTTTTAT-AAAAAATGCCGCTATAGACC-TGTACTTT
1 TAGCGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAAC-TT
*
8667333 TAGTGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAACTT
1 TAGCGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAACTT
* * *
8667377 TAGCGGCGCTTTTGTAAAAAAAGGCCGCTATAGACC-TGTACTTT
1 TAGCGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAAC-TT
* *
8667421 TAGCGGCGCTTTTTTAAAAAAACGTCGCTATAGACCAAGAACTT
1 TAGCGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAACTT
* *
8667465 TAGCGGCGCTTTTTTGAAAAAACG-CGCTA
1 TAGCGGCGCTTTTGTAAAAAAACGCCGCTA
8667494 ATTTGCCCAG
Statistics
Matches: 142, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
43 21 0.15
44 115 0.81
45 6 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
TAGCGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAACTT
Found at i:8667421 original size:88 final size:87
Alignment explanation
Indices: 8667290--8667486 Score: 322
Period size: 88 Copynumber: 2.2 Consensus size: 87
8667280 TCTTGGTCTA
* *
8667290 TAGCGGCGCTTTTATAAAAAATGCCGCTATAGACCTGTACTTTTAGTGGCGCTTTTGTAAAAAAA
1 TAGCGGCGCTTTTATAAAAAAGGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAA
8667355 CGCCGCTATAGACCAAGAACTT
66 CGCCGCTATAGACCAAGAACTT
* *
8667377 TAGCGGCGCTTTTGTAAAAAAAGGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTTTAAAAAA
1 TAGCGGCGCTTTTAT-AAAAAAGGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAA
*
8667442 ACGTCGCTATAGACCAAGAACTT
65 ACGCCGCTATAGACCAAGAACTT
*
8667465 TAGCGGCGCTTTTTTGAAAAAA
1 TAGCGGCGCTTTTAT-AAAAAA
8667487 CGCGCTAATT
Statistics
Matches: 102, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 14 0.14
88 88 0.86
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (87 bp):
TAGCGGCGCTTTTATAAAAAAGGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAA
CGCCGCTATAGACCAAGAACTT
Found at i:8673967 original size:21 final size:21
Alignment explanation
Indices: 8673943--8673982 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8673933 AAATTAATTC
*
8673943 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
8673964 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
8673983 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:8676214 original size:134 final size:133
Alignment explanation
Indices: 8676044--8676296 Score: 479
Period size: 134 Copynumber: 1.9 Consensus size: 133
8676034 GAATTCCACA
8676044 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
8676109 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATG-AAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
8676174 TATT
130 TATT
*
8676178 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCATACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
8676243 TAAGTTGGATAGAAACATGAAAATAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
8676297 GGAATCACCA
Statistics
Matches: 117, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
133 34 0.29
134 83 0.71
ACGTcount: A:0.52, C:0.18, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:8676280 original size:21 final size:20
Alignment explanation
Indices: 8676256--8676295 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8676246 GTTGGATAGA
*
8676256 AACATGAAAATAGACCAAAAG
1 AACATCAAAATA-ACCAAAAG
*
8676277 AACATCTAAATAACCAAAA
1 AACATCAAAATAACCAAAA
8676296 TGGAATCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.12
Consensus pattern (20 bp):
AACATCAAAATAACCAAAAG
Found at i:8677679 original size:26 final size:26
Alignment explanation
Indices: 8677650--8677731 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
8677640 TGGTACAAAT
8677650 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8677676 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8677702 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8677728 TGAT
1 TGAT
8677732 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8680433 original size:26 final size:26
Alignment explanation
Indices: 8680396--8680529 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
8680386 TGATACAAAT
*
8680396 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8680422 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
8680447 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8680472 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8680498 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8680524 TGATAA
1 TGATAA
8680530 GAATTCATGT
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
24 15 0.14
25 18 0.17
26 71 0.68
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8680460 original size:50 final size:52
Alignment explanation
Indices: 8680396--8680529 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
8680386 TGATACAAAT
8680396 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
8680447 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
8680498 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
8680530 GAATTCATGT
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
50 39 0.49
51 18 0.22
52 23 0.29
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:8685156 original size:10 final size:11
Alignment explanation
Indices: 8685140--8685185 Score: 56
Period size: 12 Copynumber: 3.9 Consensus size: 11
8685130 ACCACTTTCC
8685140 ATATATATATTT
1 ATATATAT-TTT
8685152 ATATATATTTT
1 ATATATATTTT
*
8685163 AAAATAATATTTT
1 -ATAT-ATATTTT
8685176 ATATATATTT
1 ATATATATTT
8685186 ATCTTATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 9 0.30
12 14 0.47
13 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATATATTTT
Found at i:8685194 original size:15 final size:15
Alignment explanation
Indices: 8685174--8685205 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8685164 AAATAATATT
*
8685174 TTATATATATTTATC
1 TTATATACATTTATC
8685189 TTATATACATTTATC
1 TTATATACATTTATC
8685204 TT
1 TT
8685206 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:8686065 original size:14 final size:14
Alignment explanation
Indices: 8686046--8686079 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8686036 ATTAAACCTG
8686046 CTTAAACCATATAT-
1 CTTAAACCATA-ATC
8686060 CTTAAACCATAATC
1 CTTAAACCATAATC
8686074 CTTAAA
1 CTTAAA
8686080 ATATAATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 17 0.89
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
CTTAAACCATAATC
Found at i:8686297 original size:41 final size:41
Alignment explanation
Indices: 8686240--8686502 Score: 474
Period size: 41 Copynumber: 6.4 Consensus size: 41
8686230 GGGGTTATGG
8686240 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
8686281 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
8686322 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
*
8686363 GGGTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
*
8686404 GGTTTTTAGCGGCGTTTTACCTAAAGTGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
* *
8686445 AGTTTTTAGCAGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
*
8686486 -GTTTTTACCGGCGTTTT
1 GGTTTTTAGCGGCGTTTT
8686503 TTTTGGAACA
Statistics
Matches: 214, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
40 15 0.07
41 199 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (41 bp):
GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
Found at i:8687306 original size:29 final size:31
Alignment explanation
Indices: 8687274--8687345 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 31
8687264 ATTGATAGTT
*
8687274 CAAGTACCATATTAAACATTTT-T-AAAGTA
1 CAAGTACCAAATTAAACATTTTATGAAAGTA
**
8687303 CAAGTACCAAATTGGACATTTTATGAAAGTA
1 CAAGTACCAAATTAAACATTTTATGAAAGTA
* *
8687334 CATGTGCCAAAT
1 CAAGTACCAAAT
8687346 ATGCATAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
29 19 0.53
30 1 0.03
31 16 0.44
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (31 bp):
CAAGTACCAAATTAAACATTTTATGAAAGTA
Found at i:8688218 original size:29 final size:30
Alignment explanation
Indices: 8688167--8688228 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
8688157 ACTTATTTTA
8688167 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
8688197 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
8688226 TTG
1 TTG
8688229 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:8690018 original size:43 final size:43
Alignment explanation
Indices: 8689942--8690192 Score: 346
Period size: 43 Copynumber: 6.1 Consensus size: 43
8689932 AAAAATTTGT
* * *
8689942 GGCGTTTGTTGGAAAAAACGCCGCTATAGGTCAAGGCTTTTAGC
1 GGCGTTTG-TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
8689986 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
8690029 GGCGTTT-TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
8690071 GGCGTTTGTGGGAAAAGCGCCGCT--A----AAGG-----AGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
8690103 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* * * *
8690146 GGCGTTTGTGGTAGAAGTGCTGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
8690189 GGCG
1 GGCG
8690193 CTTTTTTTAA
Statistics
Matches: 188, Mismatches: 7, Indels: 25
0.85 0.03 0.11
Matches are distributed among these distances:
32 27 0.14
34 1 0.01
37 4 0.02
38 4 0.02
41 1 0.01
42 42 0.22
43 101 0.54
44 8 0.04
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.24
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:8690058 original size:85 final size:85
Alignment explanation
Indices: 8689950--8690215 Score: 338
Period size: 85 Copynumber: 3.2 Consensus size: 85
8689940 GTGGCGTTTG
* *
8689950 TTGGAAAAAACGCCGCTATAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TTGGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
8690015 TCAAGGCTTTTAGCGGCGTT
66 TCAAGGCTTTTAGCGGCGTT
*
8690035 TTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT--A--
1 TTGGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
8690096 --AAGG-----AGCGGCGTT
66 TCAAGGCTTTTAGCGGCGTT
* * * * *
8690109 TGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAGAAGTGCTGCTAAAG
1 T-TGGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
8690174 GTCAAGGCTTTTAGCGGCGCTT
65 GTCAAGGCTTTTAGCGGCG-TT
***
8690196 TTTTTAAAAACGCCGCTAAA
1 TTGGGAAAAACGCCGCTAAA
8690216 TTTGGCAGAT
Statistics
Matches: 157, Mismatches: 11, Indels: 25
0.81 0.06 0.13
Matches are distributed among these distances:
74 10 0.06
75 55 0.35
77 1 0.01
79 4 0.03
81 4 0.03
83 1 0.01
85 57 0.36
86 22 0.14
87 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (85 bp):
TTGGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
TCAAGGCTTTTAGCGGCGTT
Found at i:8690109 original size:32 final size:32
Alignment explanation
Indices: 8690068--8690131 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
8690058 CAAGGCTTTT
8690068 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
8690100 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
8690132 TCAAGGCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.41, T:0.16
Consensus pattern (32 bp):
AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
Found at i:8690148 original size:75 final size:74
Alignment explanation
Indices: 8690026--8690174 Score: 253
Period size: 75 Copynumber: 2.0 Consensus size: 74
8690016 CAAGGCTTTT
8690026 AGCGGCGTTTTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
1 AGCGGCGTTTTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
8690091 CGCTAAAGG
66 CGCTAAAGG
* * *
8690100 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAGAAGTG
1 AGCGGCGTTT-TGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
*
8690165 CTGCTAAAGG
65 CCGCTAAAGG
8690175 TCAAGGCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
74 10 0.14
75 60 0.86
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.22
Consensus pattern (74 bp):
AGCGGCGTTTTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
CGCTAAAGG
Found at i:8690214 original size:43 final size:43
Alignment explanation
Indices: 8690100--8690215 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
8690090 CCGCTAAAGG
*
8690100 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT
1 AGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAGGCTTTT
* * *
8690143 AGCGGCGTTTGTGGTAGAAGTGCTGCTAAAGGTCAAGGCTTTT
1 AGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAGGCTTTT
** *
8690186 AGCGGCGCTTT-TTTTAAAAACGCCGCTAAA
1 AGCGGCG-TTTGTGGTAAAAGCGCCGCTAAA
8690216 TTTGGCAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 59 0.95
44 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
AGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAGGCTTTT
Found at i:8696285 original size:9 final size:9
Alignment explanation
Indices: 8696271--8696486 Score: 125
Period size: 9 Copynumber: 23.6 Consensus size: 9
8696261 TATTTAAGTA
8696271 TTATGTAAG
1 TTATGTAAG
*
8696280 TTATGTAAT
1 TTATGTAAG
*
8696289 TTATGATATG
1 TTATG-TAAG
* * *
8696299 ATATAT-AT
1 TTATGTAAG
*
8696307 TTATGTAAA
1 TTATGTAAG
* *
8696316 TTATAT-AT
1 TTATGTAAG
*
8696324 TTATCTAAG
1 TTATGTAAG
8696333 TTATGTAAG
1 TTATGTAAG
*
8696342 TTATGTAAA
1 TTATGTAAG
*
8696351 TTATGATATAAAA
1 TTATG---T-AAG
*
8696364 TATATTTAAG
1 T-TATGTAAG
8696374 TATTATGTAAG
1 --TTATGTAAG
8696385 TTATGTAAG
1 TTATGTAAG
**
8696394 TTA--TATT
1 TTATGTAAG
*
8696401 TTATCTAAG
1 TTATGTAAG
*
8696410 TTATATAAG
1 TTATGTAAG
*
8696419 TTATATAAG
1 TTATGTAAG
*
8696428 TTATGTATG
1 TTATGTAAG
*
8696437 TTATATAAG
1 TTATGTAAG
8696446 TTATGTAAG
1 TTATGTAAG
* *
8696455 TTATATATG
1 TTATGTAAG
*
8696464 TTATATAAG
1 TTATGTAAG
*
8696473 TTATGTAAA
1 TTATGTAAG
8696482 TTATG
1 TTATG
8696487 ATATCAAATA
Statistics
Matches: 161, Mismatches: 34, Indels: 24
0.74 0.16 0.11
Matches are distributed among these distances:
7 5 0.03
8 10 0.06
9 122 0.76
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:8696322 original size:17 final size:17
Alignment explanation
Indices: 8696300--8696359 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
8696290 TATGATATGA
8696300 TATATATTTATGTAAAT
1 TATATATTTATGTAAAT
* *
8696317 TATATATTTATCTAAGT
1 TATATATTTATGTAAAT
* *
8696334 TATGTAAGTTATGTAAAT
1 TATAT-ATTTATGTAAAT
8696352 TATGATAT
1 TAT-ATAT
8696360 AAAATATATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
17 19 0.58
18 13 0.39
19 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (17 bp):
TATATATTTATGTAAAT
Found at i:8696409 original size:16 final size:16
Alignment explanation
Indices: 8696385--8696415 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8696375 ATTATGTAAG
*
8696385 TTATGTAAGTTATATT
1 TTATCTAAGTTATATT
8696401 TTATCTAAGTTATAT
1 TTATCTAAGTTATAT
8696416 AAGTTATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (16 bp):
TTATCTAAGTTATATT
Found at i:8696614 original size:14 final size:14
Alignment explanation
Indices: 8696595--8696645 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
8696585 AGCGGGATTA
8696595 AATAATATTTAATT
1 AATAATATTTAATT
8696609 AATAATATTT-A-T
1 AATAATATTTAATT
*
8696621 AAAAATTATTTTAATT
1 AATAA-TA-TTTAATT
8696637 AAATAATAT
1 -AATAATAT
8696646 ACATGTCGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
12 5 0.17
13 3 0.10
14 13 0.43
15 2 0.07
16 3 0.10
17 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATAATATTTAATT
Found at i:8696850 original size:24 final size:24
Alignment explanation
Indices: 8696822--8696889 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
8696812 ACTTAAATGG
8696822 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
8696846 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
8696870 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
8696890 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:8698230 original size:25 final size:26
Alignment explanation
Indices: 8698193--8698244 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
8698183 TCAAACATGC
8698193 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
8698219 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
8698244 A
1 A
8698245 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:8699804 original size:25 final size:26
Alignment explanation
Indices: 8699725--8699843 Score: 201
Period size: 25 Copynumber: 4.7 Consensus size: 26
8699715 ATGAAATTCC
8699725 ATCATGGAACATTTACCTAA--CATT
1 ATCATGGAACATTTACCTAACCCATT
8699749 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8699775 ATCATGAAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
8699800 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8699826 ATCAT-GAACATTTACCTA
1 ATCATGGAACATTTACCTA
8699844 TTATCGTATC
Statistics
Matches: 90, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
24 20 0.22
25 37 0.41
26 33 0.37
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8699815 original size:51 final size:49
Alignment explanation
Indices: 8699725--8699843 Score: 211
Period size: 51 Copynumber: 2.4 Consensus size: 49
8699715 ATGAAATTCC
8699725 ATCATGGAACATTTACCTAACATTATCATGGAACATTTACCTAACCCATT
1 ATCAT-GAACATTTACCTAACATTATCATGGAACATTTACCTAACCCATT
8699775 ATCATGAAACATTTACCTAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATG-AACATTTACCTAA-CATTATCATGGAACATTTACCTAACCCATT
8699826 ATCATGAACATTTACCTA
1 ATCATGAACATTTACCTA
8699844 TTATCGTATC
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
49 1 0.01
50 30 0.45
51 36 0.54
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (49 bp):
ATCATGAACATTTACCTAACATTATCATGGAACATTTACCTAACCCATT
Found at i:8705232 original size:25 final size:27
Alignment explanation
Indices: 8705195--8705247 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
8705185 TCAAACATGC
8705195 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
8705221 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
8705247 A
1 A
8705248 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:8706770 original size:26 final size:26
Alignment explanation
Indices: 8706731--8706838 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
8706721 TGAAATTCCA
8706731 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8706757 ATCATGGAAGATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8706783 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8706809 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8706835 ATCA
1 ATCA
8706839 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8707690 original size:21 final size:20
Alignment explanation
Indices: 8707665--8707720 Score: 78
Period size: 19 Copynumber: 2.8 Consensus size: 20
8707655 AAAACAGACT
8707665 TTTAGCGGCGTTTTTTTTGCC
1 TTTAGCGGCG-TTTTTTTGCC
*
8707686 TTTAGCGGCG-CTTTTTGCC
1 TTTAGCGGCGTTTTTTTGCC
8707705 TTTAGCGGCGCTTTTT
1 TTTAGCGGCG-TTTTT
8707721 CCAAAAACGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 18 0.58
21 13 0.42
ACGTcount: A:0.05, C:0.21, G:0.25, T:0.48
Consensus pattern (20 bp):
TTTAGCGGCGTTTTTTTGCC
Found at i:8707719 original size:18 final size:19
Alignment explanation
Indices: 8707678--8707720 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
8707668 AGCGGCGTTT
8707678 TTTTTGCCTTTAGCGGCGC
1 TTTTTGCCTTTAGCGGCGC
8707697 TTTTTGCCTTTAGCGGCGC
1 TTTTTGCCTTTAGCGGCGC
8707716 TTTTT
1 TTTTT
8707721 CCAAAAACGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.05, C:0.23, G:0.23, T:0.49
Consensus pattern (19 bp):
TTTTTGCCTTTAGCGGCGC
Found at i:8708049 original size:19 final size:19
Alignment explanation
Indices: 8708004--8708050 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8707994 TAAATATTAA
*
8708004 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
8708023 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
8708042 AATAAAAAT
1 AATAAAAAT
8708051 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:8708544 original size:23 final size:24
Alignment explanation
Indices: 8708457--8708550 Score: 102
Period size: 23 Copynumber: 4.0 Consensus size: 24
8708447 CAGCAACTAC
** * *
8708457 ACACTTCAATTTGTAGTACTTAAA
1 ACACTTCAATTTACAGCACTTTAA
*
8708481 ACACTTCAATTTACAACA-TTTAA
1 ACACTTCAATTTACAGCACTTTAA
* *
8708504 GCACTTCAATTTATAGCA-TTTAA
1 ACACTTCAATTTACAGCACTTTAA
*
8708527 ACACTTCAATTTGCAGCACTTTAA
1 ACACTTCAATTTACAGCACTTTAA
8708551 TTTAGTAGGG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
23 39 0.67
24 19 0.33
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.36
Consensus pattern (24 bp):
ACACTTCAATTTACAGCACTTTAA
Found at i:8714802 original size:15 final size:15
Alignment explanation
Indices: 8714784--8714824 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
8714774 AATTTTTAAG
8714784 TTTTAAGTTTTTTATT
1 TTTTAA-TTTTTTATT
*
8714800 TTTTTATTTTTTATT
1 TTTTAATTTTTTATT
8714815 TTTTAATTTT
1 TTTTAATTTT
8714825 AAATTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTTAATTTTTTATT
Found at i:8714809 original size:6 final size:7
Alignment explanation
Indices: 8714791--8714824 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
8714781 AAGTTTTAAG
8714791 TTTTTTA
1 TTTTTTA
8714798 TTTTTTTA
1 -TTTTTTA
8714806 TTTTTTA
1 TTTTTTA
8714813 TTTTTTAA
1 TTTTTT-A
8714821 TTTT
1 TTTT
8714825 AAATTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 13 0.52
8 12 0.48
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:8715741 original size:39 final size:39
Alignment explanation
Indices: 8715690--8715778 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
8715680 TTTTTTGGGG
* *
8715690 TTTAGGGTTTTAAGGGTTATAGTTTAGTGTTTAGGGTTTT
1 TTTAGGG-TTTAAGGGTTATAGATTAGTGTTTAGGATTTT
*
8715730 TTTAGGGTTTAAGGGTTATAGATTAGTGTTTATGATTTT
1 TTTAGGGTTTAAGGGTTATAGATTAGTGTTTAGGATTTT
8715769 TTT-GGGTTTA
1 TTTAGGGTTTA
8715779 GGATTTTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 7 0.15
39 32 0.70
40 7 0.15
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (39 bp):
TTTAGGGTTTAAGGGTTATAGATTAGTGTTTAGGATTTT
Found at i:8715858 original size:41 final size:41
Alignment explanation
Indices: 8715801--8715995 Score: 223
Period size: 41 Copynumber: 4.8 Consensus size: 41
8715791 GTTATATGAA
* * *
8715801 TTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * **
8715842 TTTTAGCAGCGTTTTACCGAAAGCATCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
8715883 TTTTAGTGGTGTTTTACCGAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
8715924 TTTTAGCGGCATTTTA-CAGAAAGCGCTGCTAATTCTCTGGT
1 TTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGGT
*
8715965 TTTGTA-CGGCGTTTTACCAAAAGCTCCGCTA
1 TTT-TAGCGGCGTTTTACCAAAAGCGCCGCTA
8715996 TTTTTAGCAG
Statistics
Matches: 128, Mismatches: 23, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
40 1 0.01
41 123 0.96
42 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:8715939 original size:82 final size:82
Alignment explanation
Indices: 8715801--8715995 Score: 250
Period size: 82 Copynumber: 2.4 Consensus size: 82
8715791 GTTATATGAA
* * *
8715801 TTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGTTTTTAGCAGCGTTTTACCGAAAGC
1 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAGTTTTTAGCAGCATTTTACAGAAAGC
*
8715866 -ATCGCTAATGCTCTGGT
66 GCT-GCTAATGCTCTGGT
* * * * *
8715883 TTTTAGTGGTGTTTTACCGAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCATTTTACAGAAAGC
1 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAGTTTTTAGCAGCATTTTACAGAAAGC
*
8715948 GCTGCTAATTCTCTGGT
66 GCTGCTAATGCTCTGGT
* *
8715965 TTTGTA-CGGCGTTTTACCAAAAGCTCCGCTA
1 TTT-TAGTGGCGTTTTACCAAAAGCGCCGCTA
8715996 TTTTTAGCAG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
82 94 0.97
83 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (82 bp):
TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAGTTTTTAGCAGCATTTTACAGAAAGC
GCTGCTAATGCTCTGGT
Found at i:8717065 original size:49 final size:49
Alignment explanation
Indices: 8716988--8717085 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
8716978 ATTTCACGCA
* * *
8716988 ATCCTTGACTCCCAGTTCCGTAAGTTCTTGGGCATACTCGATTTTTATC
1 ATCCTTGACTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
*
8717037 ATCCTTGGCTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
1 ATCCTTGACTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
8717086 TTCCATTGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (49 bp):
ATCCTTGACTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
Found at i:8720239 original size:2 final size:2
Alignment explanation
Indices: 8720232--8720270 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8720222 CCATAGAAAT
8720232 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8720271 TAGCTTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8724501 original size:2 final size:2
Alignment explanation
Indices: 8724494--8724524 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
8724484 TGTCTTGAGC
8724494 TA TA TA TA TA TGA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
8724525 ATAATTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8731357 original size:21 final size:21
Alignment explanation
Indices: 8731331--8731371 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8731321 AGACAAGCGA
* *
8731331 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8731352 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8731372 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8738259 original size:39 final size:39
Alignment explanation
Indices: 8738216--8738312 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 39
8738206 GGCATTTTTT
8738216 GCGGCGTTTTAATAAAAACGCCACT-AAAAATAAGCATTA
1 GCGGCGTTTTAA-AAAAACGCCACTAAAAAATAAGCATTA
* * * * *
8738255 GCGGCACTTCTAAAAAAATGTCACTAAAAAATGAGCATTA
1 GCGGC-GTTTTAAAAAAACGCCACTAAAAAATAAGCATTA
8738295 GCGGCGCTTTTAAAAAAA
1 GCGGCG-TTTTAAAAAAA
8738313 TGCCGCTATA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
39 15 0.31
40 33 0.69
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (39 bp):
GCGGCGTTTTAAAAAAACGCCACTAAAAAATAAGCATTA
Found at i:8738296 original size:40 final size:39
Alignment explanation
Indices: 8738237--8738314 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
8738227 ATAAAAACGC
8738237 CACTAAAAATAAGCATTAGCGGCACTTCTAAAAAAATGT
1 CACTAAAAATAAGCATTAGCGGCACTTCTAAAAAAATGT
* * *
8738276 CACTAAAAAATGAGCATTAGCGGCGCTTTTAAAAAAATG
1 CACT-AAAAATAAGCATTAGCGGCACTTCTAAAAAAATG
8738315 CCGCTATAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (39 bp):
CACTAAAAATAAGCATTAGCGGCACTTCTAAAAAAATGT
Found at i:8738367 original size:43 final size:43
Alignment explanation
Indices: 8738291--8738395 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
8738281 AAAAATGAGC
8738291 ATTAGCGGCGCTTTT---AAAAAAATGCCGCTATAGGTTGACA
1 ATTAGCGGCGCTTTTAGAAAAAAAATGCCGCTATAGGTTGACA
* * *
8738331 ATTAGCGACGCTTTTAGAAAAAAAATGCCTCTATAGGTTGACC
1 ATTAGCGGCGCTTTTAGAAAAAAAATGCCGCTATAGGTTGACA
* *
8738374 ATCAGCGGTGCTTTATAGAAAA
1 ATTAGCGGCGCTTT-TAGAAAA
8738396 CGCCGCAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 14 0.25
43 34 0.62
44 7 0.13
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (43 bp):
ATTAGCGGCGCTTTTAGAAAAAAAATGCCGCTATAGGTTGACA
Found at i:8738531 original size:12 final size:13
Alignment explanation
Indices: 8738501--8738533 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
8738491 CGGCGTTTTT
8738501 CAAAAAAGCGCTG
1 CAAAAAAGCGCTG
8738514 CAAAAAAGCGCTG
1 CAAAAAAGCGCTG
8738527 CAAAAAA
1 CAAAAAA
8738534 CTTAACACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.55, C:0.21, G:0.18, T:0.06
Consensus pattern (13 bp):
CAAAAAAGCGCTG
Found at i:8738869 original size:22 final size:23
Alignment explanation
Indices: 8738826--8738870 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8738816 TATGACTAAT
* *
8738826 TGTTTTTTTATTTATATATTAAA
1 TGTTTTCTTATATATATATTAAA
*
8738849 TGTTTTCTTATATA-ATTTTAAA
1 TGTTTTCTTATATATATATTAAA
8738871 AGAGATAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (23 bp):
TGTTTTCTTATATATATATTAAA
Found at i:8739045 original size:14 final size:14
Alignment explanation
Indices: 8739028--8739058 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8739018 TAGTTGGAGT
*
8739028 TTAAGATTTAGGGG
1 TTAAGAATTAGGGG
8739042 TTAAGAATTAGGGG
1 TTAAGAATTAGGGG
8739056 TTA
1 TTA
8739059 GGGGATAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (14 bp):
TTAAGAATTAGGGG
Found at i:8739061 original size:7 final size:7
Alignment explanation
Indices: 8739035--8739086 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
8739025 AGTTTAAGAT
8739035 TTAGGGG
1 TTAGGGG
* **
8739042 TTAAGAA
1 TTAGGGG
8739049 TTAGGGG
1 TTAGGGG
8739056 TTAGGGG
1 TTAGGGG
* * *
8739063 ATAAGGA
1 TTAGGGG
8739070 TTAGGGG
1 TTAGGGG
8739077 TTAGGGG
1 TTAGGGG
8739084 TTA
1 TTA
8739087 ATAGTTAAGA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.44, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:8739061 original size:21 final size:21
Alignment explanation
Indices: 8739035--8739087 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
8739025 AGTTTAAGAT
8739035 TTAGGGGTTAAGAATTAGGGG
1 TTAGGGGTTAAGAATTAGGGG
* *
8739056 TTAGGGGATAAGGATTAGGGG
1 TTAGGGGTTAAGAATTAGGGG
8739077 TTAGGGGTTAA
1 TTAGGGGTTAA
8739088 TAGTTAAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.43, T:0.28
Consensus pattern (21 bp):
TTAGGGGTTAAGAATTAGGGG
Found at i:8742766 original size:19 final size:19
Alignment explanation
Indices: 8742742--8742781 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
8742732 CACATGTAAA
8742742 CCAACTTCCACTTCATTTG
1 CCAACTTCCACTTCATTTG
*
8742761 CCAACTTTCACTTCATTTG
1 CCAACTTCCACTTCATTTG
8742780 CC
1 CC
8742782 TCGCTTCGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.38
Consensus pattern (19 bp):
CCAACTTCCACTTCATTTG
Found at i:8743020 original size:24 final size:24
Alignment explanation
Indices: 8742993--8743039 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8742983 TTAATAAATT
*
8742993 AAATATTCTCATACGTTTTATCAC
1 AAATATTATCATACGTTTTATCAC
* *
8743017 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCATACGTTTTATCA
8743040 TTTCAGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (24 bp):
AAATATTATCATACGTTTTATCAC
Found at i:8743231 original size:39 final size:39
Alignment explanation
Indices: 8743180--8743411 Score: 428
Period size: 39 Copynumber: 5.9 Consensus size: 39
8743170 GACATGTTAT
*
8743180 TTTAATTAATATAATTTGGATTAATTTATGTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
8743219 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
8743258 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
8743297 TTTAATTAATATAATTTAGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
8743336 TTTAATTAGTATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
8743375 TTTAATTAATATAAATTGGATTAATTTATTTAAATAT
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATAT
8743412 ATAAGAATTT
Statistics
Matches: 187, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 187 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:8743241 original size:15 final size:14
Alignment explanation
Indices: 8743184--8743399 Score: 76
Period size: 14 Copynumber: 16.4 Consensus size: 14
8743174 TGTTATTTTA
8743184 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
8743199 ATTAAT-T--TATG
1 ATTAATATAATTTG
* * *
8743210 -TAAATATTATTTA
1 ATTAATATAATTTG
8743223 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
8743238 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
8743250 A--AATATTATTTA
1 ATTAATATAATTTG
8743262 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
8743277 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
8743289 A--AATATTATTTA
1 ATTAATATAATTTG
8743301 ATTAATATAATTTAG
1 ATTAATATAATTT-G
*
8743316 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
8743328 A--AATATTATTTA
1 ATTAATATAATTTG
*
8743340 ATTAGTATAATTTGG
1 ATTAATATAATTT-G
*
8743355 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
8743367 A--AATATTATTTA
1 ATTAATATAATTTG
*
8743379 ATTAATATAAATTGG
1 ATTAATAT-AATTTG
8743394 ATTAAT
1 ATTAAT
8743400 TTATTTAAAT
Statistics
Matches: 154, Mismatches: 22, Indels: 50
0.68 0.10 0.22
Matches are distributed among these distances:
10 16 0.10
11 26 0.17
12 10 0.06
13 2 0.01
14 62 0.40
15 38 0.25
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATTAATATAATTTG
Found at i:8743530 original size:9 final size:9
Alignment explanation
Indices: 8743513--8743694 Score: 258
Period size: 9 Copynumber: 20.2 Consensus size: 9
8743503 TATATACTTG
8743513 AACTTACAT
1 AACTTACAT
*
8743522 AACTCACAT
1 AACTTACAT
8743531 AACTTACAT
1 AACTTACAT
*
8743540 AACTTATAT
1 AACTTACAT
8743549 AA-TTCACAT
1 AACTT-ACAT
8743558 AACTTACAT
1 AACTTACAT
8743567 AACTTACAT
1 AACTTACAT
*
8743576 AACTTATAT
1 AACTTACAT
8743585 AACTTACAT
1 AACTTACAT
8743594 AACTTACAT
1 AACTTACAT
*
8743603 AACTTATAT
1 AACTTACAT
*
8743612 AACTCACAT
1 AACTTACAT
8743621 AACTTACAT
1 AACTTACAT
*
8743630 AACTCACAT
1 AACTTACAT
8743639 AACTTACAT
1 AACTTACAT
*
8743648 AACTTATAT
1 AACTTACAT
*
8743657 AACTCACAT
1 AACTTACAT
*
8743666 AACTCACAT
1 AACTTACAT
*
8743675 AACTCACAT
1 AACTTACAT
8743684 AACTTACAT
1 AACTTACAT
8743693 AA
1 AA
8743695 TACATAAGTA
Statistics
Matches: 155, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
8 2 0.01
9 151 0.97
10 2 0.01
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:8748994 original size:13 final size:14
Alignment explanation
Indices: 8748978--8749006 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8748968 TTATAAATAT
8748978 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
8748991 TTATAATTGTTTAA
1 TTATAATTGTTTAA
8749005 TT
1 TT
8749007 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:8749441 original size:21 final size:21
Alignment explanation
Indices: 8749417--8749486 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
8749407 CTTAGAGGGA
8749417 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
* * *
8749438 GGCAGTAGTGAGGGAGGCAAC
1 GGCAGCAGAGAGGGAGGCAGC
* * *
8749459 GGCAGCAGCGAGAGAGGCAGA
1 GGCAGCAGAGAGGGAGGCAGC
8749480 GGCAGCA
1 GGCAGCA
8749487 TCGTTGGTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.49, T:0.03
Consensus pattern (21 bp):
GGCAGCAGAGAGGGAGGCAGC
Found at i:8749785 original size:31 final size:31
Alignment explanation
Indices: 8749743--8749803 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
8749733 TGTATTTTTT
**
8749743 ATGTTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGTTACATTTGCTGTTTTTCATTGGATTTC
*
8749774 ATGTTATATTTGCTGTTTTTCATTGGATTT
1 ATGTTACATTTGCTGTTTTTCATTGGATTT
8749804 AATGCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.15, C:0.08, G:0.20, T:0.57
Consensus pattern (31 bp):
ATGTTACATTTGCTGTTTTTCATTGGATTTC
Found at i:8759535 original size:30 final size:29
Alignment explanation
Indices: 8759474--8759535 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
8759464 ATTTAATCCG
* * * *
8759474 ATTTTTATATTATTTTTACTCTTTTTTTT
1 ATTTTTACATTATTTTAACTCTTATTATT
*
8759503 ATTTTTAGCATTATTTTAACTGTTATTATT
1 ATTTTTA-CATTATTTTAACTCTTATTATT
8759533 ATT
1 ATT
8759536 ATTATTACCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.68
Consensus pattern (29 bp):
ATTTTTACATTATTTTAACTCTTATTATT
Found at i:8759979 original size:12 final size:11
Alignment explanation
Indices: 8759961--8759990 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
8759951 CGTATTTTCA
8759961 TTATATATATG
1 TTATATATATG
8759972 TATATATATATG
1 T-TATATATATG
8759984 TTATATA
1 TTATATA
8759991 GCATTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (11 bp):
TTATATATATG
Found at i:8760255 original size:22 final size:21
Alignment explanation
Indices: 8760225--8760267 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
8760215 TACTACGTAC
*
8760225 ACATATTATTATTTTTAATATAT
1 ACATATTA-TATGTTT-ATATAT
8760248 ACAT-TTATATGTTTATATAT
1 ACATATTATATGTTTATATAT
8760268 CGTTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.32
21 6 0.32
22 3 0.16
23 4 0.21
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (21 bp):
ACATATTATATGTTTATATAT
Found at i:8760302 original size:17 final size:17
Alignment explanation
Indices: 8760269--8760302 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8760259 TTTATATATC
* *
8760269 GTTATTATTAGTCTTTT
1 GTTATTATTACTATTTT
8760286 GTTATTATTACTATTTT
1 GTTATTATTACTATTTT
8760303 TAATAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.06, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTATTATTACTATTTT
Found at i:8764600 original size:18 final size:18
Alignment explanation
Indices: 8764563--8764602 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8764553 ACGCTTTTTT
*
8764563 TTGCATTCATCGCATTCA
1 TTGCATTCATCGCATACA
8764581 TTGCATTCAT-GCATCACA
1 TTGCATTCATCGCAT-ACA
8764599 TTGC
1 TTGC
8764603 GTCATACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (18 bp):
TTGCATTCATCGCATACA
Found at i:8784391 original size:12 final size:12
Alignment explanation
Indices: 8784355--8784410 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
8784345 GCAAATGAAT
*
8784355 CATTTATCATTTAT
1 CATTT-TCATTT-C
*
8784369 CATTTCCATTTC
1 CATTTTCATTTC
*
8784381 CATTTTTATTTC
1 CATTTTCATTTC
8784393 CATTTTCATTTC
1 CATTTTCATTTC
*
8784405 TATTTT
1 CATTTT
8784411 GAGAAAATCA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
12 26 0.72
13 5 0.14
14 5 0.14
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.61
Consensus pattern (12 bp):
CATTTTCATTTC
Found at i:8784393 original size:18 final size:18
Alignment explanation
Indices: 8784370--8784409 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8784360 ATCATTTATC
*
8784370 ATTTCCATTTCCATTTTT
1 ATTTCCATTTCCATTTCT
*
8784388 ATTTCCATTTTCATTTCT
1 ATTTCCATTTCCATTTCT
8784406 ATTT
1 ATTT
8784410 TGAGAAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTCCATTTCCATTTCT
Found at i:8789387 original size:23 final size:23
Alignment explanation
Indices: 8789341--8789387 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
8789331 AAATAGAGAA
*
8789341 TTTAATTTTTTATTTTCTTCTTT
1 TTTAATTTTTTATTTTCTTATTT
*
8789364 TTTAA-TTTTTATTTTCTTAATT
1 TTTAATTTTTTATTTTCTTATTT
8789386 TT
1 TT
8789388 ATGAAAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTAATTTTTTATTTTCTTATTT
Found at i:8789389 original size:14 final size:14
Alignment explanation
Indices: 8789345--8789387 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
8789335 AGAGAATTTA
*
8789345 ATTTTTTATTTTCTT
1 ATTTTTTAATTT-TT
*
8789360 CTTTTTTAATTTTT
1 ATTTTTTAATTTTT
8789374 ATTTTCTTAATTTT
1 ATTTT-TTAATTTT
8789388 ATGAAAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (14 bp):
ATTTTTTAATTTTT
Found at i:8796259 original size:3 final size:3
Alignment explanation
Indices: 8796251--8796297 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
8796241 TCTTCACAAG
8796251 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8796298 GAGATAGTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8797361 original size:17 final size:17
Alignment explanation
Indices: 8797339--8797372 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8797329 CCCCTTTCCC
*
8797339 TTCCTTTTCTCTCCATT
1 TTCCTTTCCTCTCCATT
*
8797356 TTCCTTTCCTTTCCATT
1 TTCCTTTCCTCTCCATT
8797373 CTCTCTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.35, G:0.00, T:0.59
Consensus pattern (17 bp):
TTCCTTTCCTCTCCATT
Found at i:8803291 original size:11 final size:11
Alignment explanation
Indices: 8803255--8803291 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
8803245 CAAAATTTAT
8803255 ATTTTTAAAAA
1 ATTTTTAAAAA
**
8803266 ATTAATAAAAA
1 ATTTTTAAAAA
8803277 ATTTTTAAAAA
1 ATTTTTAAAAA
8803288 ATTT
1 ATTT
8803292 AAAATTTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
ATTTTTAAAAA
Found at i:8805156 original size:26 final size:27
Alignment explanation
Indices: 8805096--8805156 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
8805086 GCAATTATTA
8805096 ATAAAGAAATAAAAAATGCAAATGATAT
1 ATAAA-AAATAAAAAATGCAAATGATAT
* * *
8805124 TTCAAAAAA-AAAAATTGCAAATGATCT
1 AT-AAAAAATAAAAAATGCAAATGATAT
8805151 ATAAAA
1 ATAAAA
8805157 TACATGGCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.14
27 17 0.61
28 4 0.14
29 3 0.11
ACGTcount: A:0.62, C:0.07, G:0.08, T:0.23
Consensus pattern (27 bp):
ATAAAAAATAAAAAATGCAAATGATAT
Found at i:8815749 original size:7 final size:7
Alignment explanation
Indices: 8815737--8815773 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
8815727 TAACTAATAC
8815737 ATATAAT
1 ATATAAT
8815744 ATATAAT
1 ATATAAT
*
8815751 AAATAAT
1 ATATAAT
8815758 ATATAAT
1 ATATAAT
8815765 ATATAAT
1 ATATAAT
8815772 AT
1 AT
8815774 CAGTTATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATATAAT
Found at i:8820506 original size:93 final size:93
Alignment explanation
Indices: 8820382--8820669 Score: 379
Period size: 93 Copynumber: 3.1 Consensus size: 93
8820372 TAAATACGCT
* * *
8820382 GTACTCTTTTTCTCTTAATTGAGGTTTTGTCTCATTGAGTTTTCCTGGTAAGGTTTTTAATGAGG
1 GTACTCTTTTTCCCTTAACTGAGGTTTTGTCTCATTGAGTTTTCCTGGTAAAGTTTTTAATGAGG
*
8820447 CAACATATTATGTGTATTATAGATATGC
66 CAACATATTATGAGTATTATAGATATGC
* * *
8820475 GTACTCTTTTTCCCTTAACTGAGGTTTTGTCTCATTGGGTTTTCTTGGTAAATTTTTTAATGAGG
1 GTACTCTTTTTCCCTTAACTGAGGTTTTGTCTCATTGAGTTTTCCTGGTAAAGTTTTTAATGAGG
8820540 CAACATATTATGAGTATTATAGATATGC
66 CAACATATTATGAGTATTATAGATATGC
* * *
8820568 GTACTCTTTTTCCTTTAACTGAGGTTTTGTCTCATTG-GATTTT--T--TAAAATTTTTAATAAG
1 GTACTCTTTTTCCCTTAACTGAGGTTTTGTCTCATTGAG-TTTTCCTGGTAAAGTTTTTAATGAG
* ** * * *
8820628 TCGGCGTATTATGCGTATTATAGATATGT
65 GCAACATATTATGAGTATTATAGATATGC
*
8820657 GTAATCTTTTTCC
1 GTACTCTTTTTCC
8820670 TTTACTAAAA
Statistics
Matches: 177, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
89 49 0.28
91 1 0.01
92 1 0.01
93 126 0.71
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (93 bp):
GTACTCTTTTTCCCTTAACTGAGGTTTTGTCTCATTGAGTTTTCCTGGTAAAGTTTTTAATGAGG
CAACATATTATGAGTATTATAGATATGC
Found at i:8823781 original size:20 final size:21
Alignment explanation
Indices: 8823747--8823786 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
8823737 CTCTAATGGA
8823747 AAATTGACTAATTTTTTTTTT
1 AAATTGACTAATTTTTTTTTT
8823768 AAATT-ACT-ATTTTTTTTTT
1 AAATTGACTAATTTTTTTTTT
8823787 GTGTTTGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 3 0.16
21 5 0.26
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (21 bp):
AAATTGACTAATTTTTTTTTT
Found at i:8824320 original size:22 final size:24
Alignment explanation
Indices: 8824286--8824345 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
8824276 AAGTCAAAAA
* *
8824286 TTATTTAAAT-AAATATTCATA-T
1 TTATATAAATAAAATACTCATATT
*
8824308 TTATATAATTAAAATACTCATATT
1 TTATATAAATAAAATACTCATATT
*
8824332 TTATAT-TATAAAAT
1 TTATATAAATAAAAT
8824346 TTTTATTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 8 0.26
23 16 0.52
24 7 0.23
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (24 bp):
TTATATAAATAAAATACTCATATT
Found at i:8824328 original size:23 final size:23
Alignment explanation
Indices: 8824296--8824345 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
8824286 TTATTTAAAT
*
8824296 AAATATTCATATTTATATAAT-TA
1 AAATACTCATATTT-TATAATATA
*
8824319 AAATACTCATATTTTATATTATA
1 AAATACTCATATTTTATAATATA
8824342 AAAT
1 AAAT
8824346 TTTTATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (23 bp):
AAATACTCATATTTTATAATATA
Found at i:8824352 original size:21 final size:20
Alignment explanation
Indices: 8824328--8824377 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
8824318 AAAATACTCA
* *
8824328 TATTTTATATTATAAAATTTT
1 TATTATATAGTATAAAA-TTT
*
8824349 TATTATATAGTGTAAAATTT
1 TATTATATAGTATAAAATTT
8824369 TATTATATA
1 TATTATATA
8824378 ATAATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
TATTATATAGTATAAAATTT
Found at i:8824409 original size:55 final size:58
Alignment explanation
Indices: 8824343--8824467 Score: 148
Period size: 59 Copynumber: 2.2 Consensus size: 58
8824333 TATATTATAA
* * **
8824343 AATTTTTATTATAT-AGTGTAAAAT-TTTATTATAT-AATAATTATAAATTGTAATAT
1 AATTATTATTATATAAGTGGAAAATAAATATTATATAAATAATTATAAATTGTAATAT
* * *
8824398 AATTATTATTATATAAATTGGAATATAAATATTATATAAATATTTATAAATTGTAATAT
1 AATTATTATTATAT-AAGTGGAAAATAAATATTATATAAATAATTATAAATTGTAATAT
*
8824457 ATTTATTATTA
1 AATTATTATTA
8824468 AAATATTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
55 13 0.22
57 7 0.12
58 8 0.14
59 30 0.52
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.50
Consensus pattern (58 bp):
AATTATTATTATATAAGTGGAAAATAAATATTATATAAATAATTATAAATTGTAATAT
Found at i:8824415 original size:26 final size:23
Alignment explanation
Indices: 8824383--8824438 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 23
8824373 ATATAATAAT
*
8824383 TATAAATTGTAATATAATTATTATTA
1 TATAAATTGGAATATAA--A-TATTA
8824409 TATAAATTGGAATATAAATATTA
1 TATAAATTGGAATATAAATATTA
8824432 TATAAAT
1 TATAAAT
8824439 ATTTATAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 12 0.41
24 1 0.03
26 16 0.55
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (23 bp):
TATAAATTGGAATATAAATATTA
Found at i:8824447 original size:10 final size:11
Alignment explanation
Indices: 8824420--8824448 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8824410 ATAAATTGGA
8824420 ATATAAATATT
1 ATATAAATATT
8824431 ATATAAATATT
1 ATATAAATATT
8824442 -TATAAAT
1 ATATAAAT
8824449 TGTAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATATAAATATT
Found at i:8824450 original size:33 final size:34
Alignment explanation
Indices: 8824404--8824475 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
8824394 ATATAATTAT
8824404 TATTATATAAATTGGAATATAAATATTA-TATAAA
1 TATTATATAAATTGGAATATAAATATTATTA-AAA
* **
8824438 TATT-TATAAATTGTAATATATTTATTATTAAAA
1 TATTATATAAATTGGAATATAAATATTATTAAAA
8824471 TATTA
1 TATTA
8824476 AAATAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (34 bp):
TATTATATAAATTGGAATATAAATATTATTAAAA
Found at i:8824457 original size:12 final size:12
Alignment explanation
Indices: 8824383--8824457 Score: 52
Period size: 12 Copynumber: 6.3 Consensus size: 12
8824373 ATATAATAAT
8824383 TATAAATTGTAA
1 TATAAATTGTAA
* *
8824395 TATAATTATTATTA
1 TATAA--ATTGTAA
*
8824409 TATAAATTGGAA
1 TATAAATTGTAA
8824421 TATAAATAT-T-A
1 TATAAAT-TGTAA
8824432 TATAAATAT-T--
1 TATAAAT-TGTAA
8824442 TATAAATTGTAA
1 TATAAATTGTAA
8824454 TATA
1 TATA
8824458 TTTATTATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
9 1 0.02
10 8 0.16
11 11 0.22
12 20 0.39
13 1 0.02
14 10 0.20
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (12 bp):
TATAAATTGTAA
Found at i:8824500 original size:59 final size:58
Alignment explanation
Indices: 8824369--8824532 Score: 162
Period size: 59 Copynumber: 2.8 Consensus size: 58
8824359 TGTAAAATTT
* *
8824369 TATTATATAATA-A-TTATAAATTGTAATATAATTATTATTATATAA-ATTGGAATATAAA
1 TATTATATAATATATTTATAAATTGTAATATATTTATTATTA-A-AATATT-GAAAATAAA
8824427 TATTATATAA-ATATTTATAAATTGTAATATATTTATTATTAAAATATT-AAAATAAA
1 TATTATATAATATATTTATAAATTGTAATATATTTATTATTAAAATATTGAAAATAAA
* * *
8824483 TATTTTTAATAATATATTAAGAATATTGTTTAA-A-ATTTATTATTAAAATA
1 TA-TTAT-ATAATATATTTATAA-ATTG--TAATATATTTATTATTAAAATA
8824533 AATTTGATTA
Statistics
Matches: 92, Mismatches: 5, Indels: 16
0.81 0.04 0.14
Matches are distributed among these distances:
56 9 0.10
57 6 0.07
58 19 0.21
59 34 0.37
60 20 0.22
61 1 0.01
62 3 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (58 bp):
TATTATATAATATATTTATAAATTGTAATATATTTATTATTAAAATATTGAAAATAAA
Found at i:8824507 original size:23 final size:23
Alignment explanation
Indices: 8824481--8824524 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8824471 TATTAAAATA
8824481 AATATT-TTTAATAATATATTAAG
1 AATATTGTTTAA-AATATATTAAG
*
8824504 AATATTGTTTAAAATTTATTA
1 AATATTGTTTAAAATATATTA
8824525 TTAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (23 bp):
AATATTGTTTAAAATATATTAAG
Found at i:8824644 original size:20 final size:21
Alignment explanation
Indices: 8824606--8824646 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8824596 AACATTATAA
*
8824606 TATTTTTTATTAATTTTTTAAG
1 TATTTTTTA-TAATATTTTAAG
8824628 TATTTTTTA-AATATTTTAA
1 TATTTTTTATAATATTTTAA
8824647 AAATTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
TATTTTTTATAATATTTTAAG
Found at i:8827483 original size:26 final size:26
Alignment explanation
Indices: 8827454--8827594 Score: 183
Period size: 27 Copynumber: 5.3 Consensus size: 26
8827444 AGCATGGCTG
* *
8827454 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
8827480 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
8827508 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
8827535 CCAGATCAGATATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * *
8827561 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
8827588 CCAGAAC
1 CCAGAAC
8827595 GCTTCCTCCA
Statistics
Matches: 105, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 30 0.29
27 58 0.55
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:8827571 original size:53 final size:55
Alignment explanation
Indices: 8827454--8827592 Score: 203
Period size: 53 Copynumber: 2.6 Consensus size: 55
8827444 AGCATGGCTG
* *
8827454 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
*
8827508 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGAT-ATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
8827561 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA
8827593 ACGCTTCCTC
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 43 0.55
54 17 0.22
55 18 0.23
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (55 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:8829204 original size:25 final size:24
Alignment explanation
Indices: 8829151--8829254 Score: 172
Period size: 25 Copynumber: 4.2 Consensus size: 24
8829141 CATGAAATTC
8829151 ATCATGAACATTTACCTAACCATT
1 ATCATGAACATTTACCTAACCATT
8829175 ATCATGAACATTTACCTAACCCATT
1 ATCATGAACATTTACCTAA-CCATT
8829200 ATCATGAAACATTTACCTAACCATT
1 ATCATG-AACATTTACCTAACCATT
8829225 ATCATGGAACATTTACCTAACCTATT
1 ATCAT-GAACATTTACCTAACC-ATT
8829251 ATCA
1 ATCA
8829255 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
24 19 0.25
25 36 0.47
26 21 0.28
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (24 bp):
ATCATGAACATTTACCTAACCATT
Found at i:8833163 original size:19 final size:22
Alignment explanation
Indices: 8833124--8833163 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
8833114 AGAAACCCAA
8833124 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
8833146 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
8833164 ATGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:8833262 original size:27 final size:28
Alignment explanation
Indices: 8833225--8833364 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
8833215 AGCATGGCTG
* *
8833225 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
8833251 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
8833279 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
8833306 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
8833333 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
8833360 CCAGA
1 CCAGA
8833365 ATGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:8833939 original size:20 final size:21
Alignment explanation
Indices: 8833914--8833960 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8833904 GTTTTAAGAA
*
8833914 TTGTTTTAGTA-TTATTTTAT
1 TTGTTTTAATATTTATTTTAT
8833934 TTGTTTTAATATTTATTTT-T
1 TTGTTTTAATATTTATTTTAT
*
8833954 ATGTTTT
1 TTGTTTT
8833961 TAAATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (21 bp):
TTGTTTTAATATTTATTTTAT
Found at i:8833988 original size:26 final size:24
Alignment explanation
Indices: 8833942--8834001 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
8833932 ATTTGTTTTA
*
8833942 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
8833966 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
8833992 TTTTTTATTT
1 ATATTTATTT
8834002 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:8835587 original size:26 final size:26
Alignment explanation
Indices: 8835557--8835664 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
8835547 TGAAATTCCC
8835557 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8835583 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8835609 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8835635 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8835661 ATCA
1 ATCA
8835665 ATTTGTGTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8840999 original size:7 final size:7
Alignment explanation
Indices: 8840987--8841016 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
8840977 TTTCGTTTGC
8840987 ATATCAT
1 ATATCAT
8840994 ATATCAT
1 ATATCAT
8841001 ATATCAT
1 ATATCAT
8841008 ATATACAT
1 ATAT-CAT
8841016 A
1 A
8841017 AGCTCCTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (7 bp):
ATATCAT
Found at i:8854969 original size:16 final size:16
Alignment explanation
Indices: 8854950--8854983 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8854940 TAATTAAAGG
8854950 TGTCATTTTTTAAGTA
1 TGTCATTTTTTAAGTA
8854966 TGTCATTTTTTAAGTA
1 TGTCATTTTTTAAGTA
8854982 TG
1 TG
8854984 GAAGATCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.56
Consensus pattern (16 bp):
TGTCATTTTTTAAGTA
Found at i:8856189 original size:26 final size:26
Alignment explanation
Indices: 8856152--8856287 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
8856142 TGATACAAAT
*
8856152 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8856178 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8856204 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8856230 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8856256 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8856282 TGATAA
1 TGATAA
8856288 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8857825 original size:26 final size:25
Alignment explanation
Indices: 8857773--8857825 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
8857763 TTTATAGTTT
8857773 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAG-AGATAAATTACCGAAA
*
8857799 TACCCCTAG-GATTAAATTGACCTAAA
1 TACCCCTAGAGA-TAAATT-ACCGAAA
8857825 T
1 T
8857826 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGATAAATTACCGAAA
Found at i:8861024 original size:27 final size:23
Alignment explanation
Indices: 8860966--8861012 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8860956 GGTTTATTTA
8860966 AATGATAAATAGTGGAATAACAT
1 AATGATAAATAGTGGAATAACAT
8860989 AATGATAAATAGTGGAATAACAT
1 AATGATAAATAGTGGAATAACAT
8861012 A
1 A
8861013 CTTTGACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.04, G:0.17, T:0.26
Consensus pattern (23 bp):
AATGATAAATAGTGGAATAACAT
Found at i:8862010 original size:27 final size:26
Alignment explanation
Indices: 8861962--8862021 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
8861952 GGGAGGTTGC
*
8861962 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
8861989 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
8862015 TAGATAT
1 CAGATAT
8862022 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:8862758 original size:27 final size:26
Alignment explanation
Indices: 8862709--8862762 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
8862699 TCACACAAGT
*
8862709 TAGTCATTTACGCCCGAAGGGCAAAA
1 TAGTCATTTACGCCCGAACGGCAAAA
* *
8862735 TAGTCATTTAACGCCCTATCGGCAAAA
1 TAGTCATTT-ACGCCCGAACGGCAAAA
8862762 T
1 T
8862763 GGTAATTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (26 bp):
TAGTCATTTACGCCCGAACGGCAAAA
Found at i:8862801 original size:27 final size:27
Alignment explanation
Indices: 8862763--8862962 Score: 283
Period size: 27 Copynumber: 7.4 Consensus size: 27
8862753 TCGGCAAAAT
* * * *
8862763 GGTAATTGTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
8862790 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
8862817 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
8862844 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
8862871 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
8862898 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*** *
8862925 AAAAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
8862952 GGTAATTCTAC
1 GGTAATTCTAC
8862963 AACTTATCCA
Statistics
Matches: 152, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:8869593 original size:27 final size:26
Alignment explanation
Indices: 8869545--8869604 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
8869535 GCGAGGCTAC
*
8869545 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
8869572 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
8869598 CAGATAT
1 CAGATAT
8869605 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:8869617 original size:33 final size:32
Alignment explanation
Indices: 8869566--8869629 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
8869556 ACAAAGTCAC
* *
8869566 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
8869598 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
8869630 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:8870323 original size:26 final size:27
Alignment explanation
Indices: 8870294--8870347 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8870284 TCACACAAGT
8870294 TAGTCATTT-ACGCCCGAGGGGCAAAA
1 TAGTCATTTAACGCCCGAGGGGCAAAA
*
8870320 TAGTCATTTAACGCCCTAGGGGCAAAA
1 TAGTCATTTAACGCCCGAGGGGCAAAA
8870347 T
1 T
8870348 GGTAATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACGCCCGAGGGGCAAAA
Found at i:8870355 original size:27 final size:26
Alignment explanation
Indices: 8870294--8870355 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
8870284 TCACACAAGT
*
8870294 TAGTCATTTACGCCCGAGGGGCAAAA
1 TAGTAATTTACGCCCGAGGGGCAAAA
* *
8870320 TAGTCATTTAACGCCCTAGGGGCAAAA
1 TAGTAATTT-ACGCCCGAGGGGCAAAA
*
8870347 TGGTAATTT
1 TAGTAATTT
8870356 TACCTCACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGTAATTTACGCCCGAGGGGCAAAA
Found at i:8870379 original size:27 final size:27
Alignment explanation
Indices: 8870348--8870519 Score: 222
Period size: 27 Copynumber: 6.4 Consensus size: 27
8870338 GGGGCAAAAT
* *
8870348 GGTAATTTTA-CCTCACAAGGGTATCTC
1 GGTAATTCTACCCT-ACAAGGGTATTTC
* *
8870375 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8870402 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8870429 GGTAATTCTATCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8870455 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
8870482 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
8870509 GGTAATTCTAC
1 GGTAATTCTAC
8870520 AACTTATCCA
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.20
27 99 0.78
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:8870421 original size:54 final size:54
Alignment explanation
Indices: 8870348--8870519 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
8870338 GGGGCAAAAT
* *
8870348 GGTAATTTTA-CCTCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCT-ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
8870402 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
8870455 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
8870509 GGTAATTCTAC
1 GGTAATTCTAC
8870520 AACTTATCCA
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 47 0.45
54 55 0.52
55 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:8870460 original size:80 final size:81
Alignment explanation
Indices: 8870348--8870519 Score: 249
Period size: 80 Copynumber: 2.1 Consensus size: 81
8870338 GGGGCAAAAT
* ** *
8870348 GGTAATTTTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
8870413 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
8870429 GGTAATTCTATCCT-AC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTA
1 GGTAATTCTA-CCTCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTA
* *
8870492 CCCTATAGGGGTATTTC
65 CCCTACAAGGGTATTTC
8870509 GGTAATTCTAC
1 GGTAATTCTAC
8870520 AACTTATCCA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 67 0.82
81 11 0.13
82 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
CCTACAAGGGTATTTC
Found at i:8871660 original size:17 final size:17
Alignment explanation
Indices: 8871627--8871662 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8871617 CACTGAGGTA
* *
8871627 TTTTCAATTTCTGTTTT
1 TTTTCAATTTATATTTT
8871644 TTTTCAATTTATATTTT
1 TTTTCAATTTATATTTT
8871661 TT
1 TT
8871663 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTTCAATTTATATTTT
Found at i:8871703 original size:91 final size:91
Alignment explanation
Indices: 8871597--8871824 Score: 333
Period size: 89 Copynumber: 2.5 Consensus size: 91
8871587 CCTTTTAATT
8871597 GTGAGTTGAGCCTCAGGGAGCA-CTGAGGTATTTTCAATTTCTGTTTTTTTTCAATTTATATTTT
1 GTGAGTTGAGCCTCAGGGAGCAGCTGAGGTATTTTCAATTTCTGTTTTTTTTCAATTTATA-TTT
*
8871661 TTCAAAAATCAACTCATATTGCGAGAG
65 TTAAAAAATCAACTCATATTGCGAGAG
*
8871688 GTGAGTTGAGCCTCA--GAGCACGCTGAGGTATTTTCAATTTCT-ATTTTTTTCAATTTATATTT
1 GTGAGTTGAGCCTCAGGGAGCA-GCTGAGGTATTTTCAATTTCTGTTTTTTTTCAATTTATATTT
*
8871750 TTAAAAAATCAACTTATATTGCGAGAG
65 TTAAAAAATCAACTCATATTGCGAGAG
* * *
8871777 ATAAGTTGGGCCTC-GGG-GCATGCTGAGGTATTTTCAATTTCTGTTTTT
1 GTGAGTTGAGCCTCAGGGAGCA-GCTGAGGTATTTTCAATTTCTGTTTTT
8871825 CAAAAATCAA
Statistics
Matches: 124, Mismatches: 8, Indels: 11
0.87 0.06 0.08
Matches are distributed among these distances:
89 68 0.55
90 21 0.17
91 35 0.28
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (91 bp):
GTGAGTTGAGCCTCAGGGAGCAGCTGAGGTATTTTCAATTTCTGTTTTTTTTCAATTTATATTTT
TAAAAAATCAACTCATATTGCGAGAG
Found at i:8871739 original size:16 final size:16
Alignment explanation
Indices: 8871718--8871751 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8871708 CGCTGAGGTA
*
8871718 TTTTCAATTTCTATTT
1 TTTTCAATTTATATTT
8871734 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
8871750 TT
1 TT
8871752 AAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:8871857 original size:73 final size:73
Alignment explanation
Indices: 8871734--8871897 Score: 247
Period size: 73 Copynumber: 2.2 Consensus size: 73
8871724 ATTTCTATTT
* * * *
8871734 TTTTCAATTTATATTTTTAAAAAATCAACTTATATTGCGAGAGATAAGTTGGGCCTCGGGGCATG
1 TTTTCAATTTCTATTTTTAAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCTCGGGGCACG
8871799 CTGAGGTA
66 CTGAGGTA
* * * * *
8871807 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACG
1 TTTTCAATTTCTATTTTTAAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCTCGGGGCACG
8871872 CTGAGGTA
66 CTGAGGTA
8871880 TTTTCAATTTCTATTTTT
1 TTTTCAATTTCTATTTTT
8871898 TAATTTGTAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 81 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (73 bp):
TTTTCAATTTCTATTTTTAAAAAATCAACTCATATTGCGAGAGATAAGTTGAGCCTCGGGGCACG
CTGAGGTA
Found at i:8871902 original size:14 final size:14
Alignment explanation
Indices: 8871880--8871914 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8871870 CGCTGAGGTA
8871880 TTTTCAATTTCTAT
1 TTTTCAATTTCTAT
* *
8871894 TTTTTAATTTGTAT
1 TTTTCAATTTCTAT
8871908 TTTTCAA
1 TTTTCAA
8871915 AAATCAACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTAT
Found at i:8871911 original size:87 final size:87
Alignment explanation
Indices: 8871820--8871983 Score: 285
Period size: 87 Copynumber: 1.9 Consensus size: 87
8871810 TCAATTTCTG
* * *
8871820 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTC
8871885 -AATTTCTATTTTTTAATTTGTA
66 AAATTTC-ATTTTTTAATTTGTA
8871907 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTC
8871972 AAATTTCATTTT
66 AAATTTCATTTT
8871984 CAAAAAAATC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
87 67 0.92
88 6 0.08
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (87 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTC
AAATTTCATTTTTTAATTTGTA
Found at i:8872180 original size:85 final size:81
Alignment explanation
Indices: 8871987--8872276 Score: 278
Period size: 85 Copynumber: 3.4 Consensus size: 81
8871977 TCATTTTCAA
* * *
8871987 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGCTCATGTGCTAAGCTACTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA--CGCTGAGCTA-TTTCAATT
* *
8872052 TC-CGTCTTAATGCCTGTTTT
63 TCTC-TTTTAAT-TCTGTTTT
* * * ** *
8872072 -TAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTCTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCTGAGCTATT-TCAATTTC
8872136 TACTTTTAATTCATGTTTT
65 T-CTTTTAATTC-TGTTTT
8872155 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC--GCTGAGCTA-TTTCAAT
*
8872220 TTCTGTTCTTAATGTCTGTTTTT
62 TTCTCTT-TTAAT-TCTG-TTTT
* * **
8872243 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGA
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
8872277 ATTCAGAATC
Statistics
Matches: 170, Mismatches: 22, Indels: 23
0.79 0.10 0.11
Matches are distributed among these distances:
81 2 0.01
82 16 0.09
83 12 0.07
84 38 0.22
85 39 0.23
86 2 0.01
87 27 0.16
88 34 0.20
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (81 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCTGAGCTATTTCAATTTCT
CTTTTAATTCTGTTTT
Found at i:8873706 original size:16 final size:17
Alignment explanation
Indices: 8873681--8873718 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8873671 TTTCATATCA
8873681 TTTT-TATTATT-TTAT
1 TTTTATATTATTATTAT
*
8873696 TTTTATATTATTATTGT
1 TTTTATATTATTATTAT
8873713 TTTTAT
1 TTTTAT
8873719 TATTCCTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 9 0.45
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATATTATTATTAT
Found at i:8874006 original size:26 final size:25
Alignment explanation
Indices: 8873963--8874019 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
8873953 AATATCATAC
**
8873963 TTTTGTTGTTATGTATATATTT-TAA
1 TTTTGTTGTTATAAATAT-TTTATAA
8873988 TTTTGTTAGTTATAAATATTTTATAA
1 TTTTGTT-GTTATAAATATTTTATAA
*
8874014 TATTGT
1 TTTTGT
8874020 ATGCATGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (25 bp):
TTTTGTTGTTATAAATATTTTATAA
Found at i:8874409 original size:21 final size:20
Alignment explanation
Indices: 8874361--8874409 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
8874351 ATTATGTGTG
* *
8874361 TATATATTATGTAAATGTTT
1 TATATATTATATAAACGTTT
*
8874381 TA-ATATTATATATACGTTTT
1 TATATATTATATAAACG-TTT
8874401 TATATATTA
1 TATATATTA
8874410 CGGATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 11 0.46
20 7 0.29
21 6 0.25
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (20 bp):
TATATATTATATAAACGTTT
Found at i:8879485 original size:22 final size:23
Alignment explanation
Indices: 8879455--8879498 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8879445 AAAATATATA
8879455 TATATATAAATTA-TATTATAAGG
1 TATATATAAATTAGTA-TATAAGG
*
8879478 TATA-ATAACTTAGTATATAAG
1 TATATATAAATTAGTATATAAG
8879499 AAAAATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (23 bp):
TATATATAAATTAGTATATAAGG
Found at i:8879651 original size:14 final size:13
Alignment explanation
Indices: 8879632--8879687 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
8879622 AAAATATGTA
8879632 ATAATATAAATCAT
1 ATAATATAAAT-AT
8879646 ATAATAATAAAATAT
1 ATAAT-AT-AAATAT
8879661 ATGTAATA-AAATAT
1 A--TAATATAAATAT
8879675 ATAATAT-AATAT
1 ATAATATAAATAT
8879687 A
1 A
8879688 AGAAGAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 11 0.30
14 12 0.32
15 5 0.14
16 5 0.14
17 4 0.11
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
ATAATATAAATAT
Done.