Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 341 of 427
Found at i:99451428 original size:10 final size:11
Alignment explanation
Indices: 99451411--99451473 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
99451401 CATAAAAAAA
99451411 TATAATTTTTT
1 TATAATTTTTT
**
99451422 TAT-ATTTTCA
1 TATAATTTTTT
99451432 TATAATTTTTT
1 TATAATTTTTT
*
99451443 AATAATTTTTT
1 TATAATTTTTT
** *
99451454 TGCAA-ATTTT
1 TATAATTTTTT
99451464 TATAATTTTT
1 TATAATTTTT
99451474 GAAAAATCTC
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
10 15 0.39
11 23 0.61
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (11 bp):
TATAATTTTTT
Found at i:99451434 original size:21 final size:22
Alignment explanation
Indices: 99451410--99451451 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
99451400 CCATAAAAAA
*
99451410 ATATAATTTTTTTAT-ATTTTC
1 ATATAATTTTTTAATAATTTTC
99451431 ATATAATTTTTTAATAATTTT
1 ATATAATTTTTTAATAATTTT
99451452 TTTGCAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATAATTTTTTAATAATTTTC
Found at i:99451495 original size:25 final size:26
Alignment explanation
Indices: 99451458--99451520 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 26
99451448 TTTTTTTGCA
* **
99451458 AATTT-TTATAATTTTTGAAAAATCT
1 AATTTATTTTAATTTTCCAAAAATCT
* *
99451483 -CTTTATTTTAATTTTCCAAAATTCT
1 AATTTATTTTAATTTTCCAAAAATCT
99451508 AATTTATTTTAAT
1 AATTTATTTTAAT
99451521 AATTATTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 3 0.10
25 16 0.53
26 11 0.37
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.56
Consensus pattern (26 bp):
AATTTATTTTAATTTTCCAAAAATCT
Found at i:99451804 original size:26 final size:27
Alignment explanation
Indices: 99451771--99451844 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 27
99451761 ATATTAAGCT
99451771 TAATTTTTTTATATTTTTA-ATTATTA
1 TAATTTTTTTATATTTTTATATTATTA
** * *
99451797 TAATTTTTAAAT-TTTTTATATTTTTG
1 TAATTTTTTTATATTTTTATATTATTA
* *
99451823 TAAATTTTTTATAACTTTTATA
1 TAATTTTTTTAT-ATTTTTATA
99451845 AATTCTATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
25 6 0.16
26 24 0.65
28 7 0.19
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (27 bp):
TAATTTTTTTATATTTTTATATTATTA
Found at i:99451812 original size:9 final size:9
Alignment explanation
Indices: 99451800--99451848 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
99451790 ATTATTATAA
99451800 TTTTTAAAT
1 TTTTTAAAT
*
99451809 TTTTTATAT
1 TTTTTAAAT
99451818 TTTTGTAAAT
1 TTTT-TAAAT
99451828 TTTTTATAACT
1 TTTTTA-AA-T
*
99451839 TTTATAAAT
1 TTTTTAAAT
99451848 T
1 T
99451849 CTATTTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 16 0.47
10 12 0.35
11 6 0.18
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:99451841 original size:20 final size:18
Alignment explanation
Indices: 99451770--99451848 Score: 83
Period size: 19 Copynumber: 4.4 Consensus size: 18
99451760 TATATTAAGC
*
99451770 TTAATTTTTTTAT-ATTT
1 TTAAATTTTTTATAATTT
*
99451787 TT-AA-TTATTATAATTT
1 TTAAATTTTTTATAATTT
*
99451803 TTAAATTTTTTATATTTT
1 TTAAATTTTTTATAATTT
99451821 TGTAAATTTTTTATAACTTT
1 T-TAAATTTTTTATAA-TTT
99451841 TATAAATT
1 T-TAAATT
99451849 CTATTTTTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
15 6 0.12
16 7 0.14
17 4 0.08
18 11 0.22
19 13 0.25
20 10 0.20
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (18 bp):
TTAAATTTTTTATAATTT
Found at i:99456753 original size:31 final size:32
Alignment explanation
Indices: 99456717--99456782 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
99456707 TTTTTTAGCT
*
99456717 AAATTTGACCCTCAAC-TTTTTAAAAAGAATC
1 AAATTTGACCATCAACATTTTTAAAAAGAATC
*
99456748 AAATTTGACCATCAACATTTTTAAAAAGAGTC
1 AAATTTGACCATCAACATTTTTAAAAAGAATC
99456780 AAA
1 AAA
99456783 ATGATTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (32 bp):
AAATTTGACCATCAACATTTTTAAAAAGAATC
Found at i:99456938 original size:25 final size:24
Alignment explanation
Indices: 99456897--99456943 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
99456887 TGAGACCTTT
99456897 TTTATTTTATTAATTTTGATTTTGC
1 TTTATTTTATTAATTTT-ATTTTGC
*
99456922 TTTATTTTAGTT-TTTTTATTTT
1 TTTATTTTA-TTAATTTTATTTT
99456944 TATAATTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 13 0.65
26 2 0.10
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.74
Consensus pattern (24 bp):
TTTATTTTATTAATTTTATTTTGC
Found at i:99467680 original size:25 final size:25
Alignment explanation
Indices: 99467652--99467704 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
99467642 TATTTTTTAG
99467652 TTTTATATCAAATTATATTAAAATA
1 TTTTATATCAAATTATATTAAAATA
* * *
99467677 TTTTATATTAAGTTTTATTAAAATA
1 TTTTATATCAAATTATATTAAAATA
99467702 TTT
1 TTT
99467705 CAAATATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (25 bp):
TTTTATATCAAATTATATTAAAATA
Found at i:99467703 original size:33 final size:32
Alignment explanation
Indices: 99467624--99467718 Score: 97
Period size: 33 Copynumber: 2.8 Consensus size: 32
99467614 ATTATTTTTA
99467624 TATTAAATTATATTAAAATA-TTT-TTTAGTTT
1 TATTAAA-TATATTAAAATATTTTATTTAGTTT
99467655 TATATCAAATTATATTAAAATATTTTATATTAAGTTT
1 TAT-T-AAA-TATATTAAAATATTTTAT-TT-AGTTT
*
99467692 TATTAAA-ATATTTCAAATATTTTATTT
1 TATTAAATATA-TTAAAATATTTTATTT
99467719 TATATTTTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 3 0.05
32 1 0.02
33 21 0.38
34 16 0.29
35 4 0.07
36 3 0.05
37 8 0.14
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (32 bp):
TATTAAATATATTAAAATATTTTATTTAGTTT
Found at i:99469303 original size:75 final size:75
Alignment explanation
Indices: 99469223--99469400 Score: 193
Period size: 76 Copynumber: 2.4 Consensus size: 75
99469213 AAAAATTTCA
* *
99469223 TTTTTTTCGTAGACTGTAAATAAGTATA-TTATT-AAA-AAGACATACGATAGAATACAATACAA
1 TTTTTTTCGTAGATTGTAAATAAGTATAGTTATTGAAATAA-A-ATA-AATAGAATACAATACAA
* ** *
99469285 GCCTTTTTTTTAAC
63 -ACAATTTTTAAAC
** * *
99469299 TTTTTTTTTTAGATTGTAAATAAGTATATGTTATTGAAATAAAATAAATATAATACAATATAAAC
1 TTTTTTTCGTAGATTGTAAATAAGTATA-GTTATTGAAATAAAATAAATAGAATACAATACAAAC
99469364 AATTTTTAAA-
65 AATTTTTAAAC
99469374 TTTTTTTCGTAGATTGTAAATAAGTAT
1 TTTTTTTCGTAGATTGTAAATAAGTAT
99469401 TATTGATGTA
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
75 25 0.29
76 33 0.38
77 14 0.16
78 8 0.09
79 4 0.05
80 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.43
Consensus pattern (75 bp):
TTTTTTTCGTAGATTGTAAATAAGTATAGTTATTGAAATAAAATAAATAGAATACAATACAAACA
ATTTTTAAAC
Found at i:99469304 original size:76 final size:74
Alignment explanation
Indices: 99469222--99469400 Score: 193
Period size: 75 Copynumber: 2.4 Consensus size: 74
99469212 AAAAAATTTC
* *
99469222 ATTTTTTTCGTAGACTGTAAATAAGTATA-TTATT-AAA-AAGACATACGATAGAATACAATACA
1 ATTTTTTTCGTAGATTGTAAATAAGTATAGTTATTGAAATAA-A-ATA-AATAGAATACAATACA
* **
99469284 AGCCTTTTTTTTAA
63 A-AC-AATTTTTAA
* ** * *
99469298 CTTTTTTTTTTAGATTGTAAATAAGTATATGTTATTGAAATAAAATAAATATAATACAATATAAA
1 ATTTTTTTCGTAGATTGTAAATAAGTATA-GTTATTGAAATAAAATAAATAGAATACAATACAAA
99469363 CAATTTTTAA
65 CAATTTTTAA
99469373 ATTTTTTTCGTAGATTGTAAATAAGTAT
1 ATTTTTTTCGTAGATTGTAAATAAGTAT
99469401 TATTGATGTA
Statistics
Matches: 86, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
75 32 0.37
76 26 0.30
77 14 0.16
78 8 0.09
79 4 0.05
80 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.42
Consensus pattern (74 bp):
ATTTTTTTCGTAGATTGTAAATAAGTATAGTTATTGAAATAAAATAAATAGAATACAATACAAAC
AATTTTTAA
Found at i:99471988 original size:35 final size:35
Alignment explanation
Indices: 99471949--99472024 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
99471939 ACAAGTAAGC
*
99471949 TTATATCAAACTTGAGTATTCGGTTACATGTGAAT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
** * * * *
99471984 TTATATTGAACATGTGTATTTGGTTACCTGTGAGT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
99472019 TTATAT
1 TTATAT
99472025 TGAGCTTATA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (35 bp):
TTATATCAAACATGAGTATTCGGTTACATGTGAAT
Found at i:99479625 original size:41 final size:41
Alignment explanation
Indices: 99479547--99479625 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
99479537 ATGTTTGTGA
* * *
99479547 TGTTTGGGCTTTGAGCCTAGCAAGCCTTATGCTGGTGACTT
1 TGTTCGGGCTTCGAGCCTAGCAAGCCTTATGCCGGTGACTT
* *
99479588 TGTTCGGGCTTCGTGCCTAGC-AGGCTTAGTGCCGGTGA
1 TGTTCGGGCTTCGAGCCTAGCAAGCCTTA-TGCCGGTGA
99479626 TTGAATTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 6 0.19
41 26 0.81
ACGTcount: A:0.13, C:0.22, G:0.33, T:0.33
Consensus pattern (41 bp):
TGTTCGGGCTTCGAGCCTAGCAAGCCTTATGCCGGTGACTT
Found at i:99479858 original size:35 final size:35
Alignment explanation
Indices: 99479819--99479894 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
99479809 ACAAGTAAGC
*
99479819 TTATATCAAACTTGAGTATTCGGTTACATGTGAAT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
** * * *
99479854 TTATATTGAACATGTGTATTTGGTTACATGTGAGT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
99479889 TTATAT
1 TTATAT
99479895 TGAGCTTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (35 bp):
TTATATCAAACATGAGTATTCGGTTACATGTGAAT
Found at i:99481791 original size:12 final size:12
Alignment explanation
Indices: 99481773--99481806 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
99481763 TAAGGTTCTA
99481773 AAAATGGAAATG
1 AAAATGGAAATG
*
99481785 GAAATGGAAATG
1 AAAATGGAAATG
*
99481797 AAAATAGAAA
1 AAAATGGAAA
99481807 CTTATAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.15
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:99487357 original size:26 final size:25
Alignment explanation
Indices: 99487311--99487359 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
99487301 ATAGACGTAG
*
99487311 ATAATTTAAAAACCACCATATTTAA
1 ATAATTTAAAAAACACCATATTTAA
* *
99487336 ATAATTTTAAAAAATACTATATTT
1 ATAA-TTTAAAAAACACCATATTT
99487360 TTAAATAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAATTTAAAAAACACCATATTTAA
Found at i:99487915 original size:18 final size:20
Alignment explanation
Indices: 99487892--99487932 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
99487882 GAAATATTTA
*
99487892 TTTTGAT-GTTTTTA-ATAT
1 TTTTGATAGTTTATATATAT
99487910 TTTTGATAGTTTATATATAT
1 TTTTGATAGTTTATATATAT
99487930 TTT
1 TTT
99487933 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (20 bp):
TTTTGATAGTTTATATATAT
Found at i:99487963 original size:12 final size:12
Alignment explanation
Indices: 99487933--99487965 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
99487923 TATATATTTT
99487933 AAAATT-ATATA
1 AAAATTAATATA
99487944 AAAA-TAATATA
1 AAAATTAATATA
99487955 AAAATTAATAT
1 AAAATTAATAT
99487966 GGGCGGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:99488255 original size:31 final size:31
Alignment explanation
Indices: 99488210--99488278 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
99488200 TAGTAATTTA
* ** *
99488210 TTTTAATTTCATCAATTTTAGTTTTTATATT
1 TTTTAAATTCATCAATTTTAGTCCTTATACT
* *
99488241 TTTTAAATTGATCAATTTTCGTCCTTATACT
1 TTTTAAATTCATCAATTTTAGTCCTTATACT
99488272 TTTTAAA
1 TTTTAAA
99488279 ATTTGAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.28, C:0.10, G:0.04, T:0.58
Consensus pattern (31 bp):
TTTTAAATTCATCAATTTTAGTCCTTATACT
Found at i:99488977 original size:22 final size:20
Alignment explanation
Indices: 99488943--99488998 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
99488933 ATAATAAATT
*
99488943 CTACTTTTTTTGTTGTTTTG
1 CTACTTTTTTTGTTATTTTG
99488963 CTACTATTTTCTTGTTATTTT-
1 CTACT-TTTT-TTGTTATTTTG
99488984 CTCAC-TTTTTTGTTA
1 CT-ACTTTTTTTGTTA
99488999 CCATTTCACT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
19 6 0.19
20 9 0.28
21 6 0.19
22 11 0.34
ACGTcount: A:0.11, C:0.14, G:0.09, T:0.66
Consensus pattern (20 bp):
CTACTTTTTTTGTTATTTTG
Found at i:99492345 original size:19 final size:19
Alignment explanation
Indices: 99492321--99492358 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
99492311 ACATTACAAC
99492321 AACCAAAAAGAACAAAATG
1 AACCAAAAAGAACAAAATG
* *
99492340 AACCAAAATGAACTAAATG
1 AACCAAAAAGAACAAAATG
99492359 GCAGCAGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.16, G:0.11, T:0.11
Consensus pattern (19 bp):
AACCAAAAAGAACAAAATG
Found at i:99493685 original size:21 final size:20
Alignment explanation
Indices: 99493661--99493699 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
99493651 CAATTCATAA
99493661 TTTTCTTAGACCAATAAATAT
1 TTTTCTTAGACCAA-AAATAT
* *
99493682 TTTTTTTATACCAAAAAT
1 TTTTCTTAGACCAAAAAT
99493700 GTTATTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (20 bp):
TTTTCTTAGACCAAAAATAT
Found at i:99493711 original size:21 final size:21
Alignment explanation
Indices: 99493661--99493711 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
99493651 CAATTCATAA
* *
99493661 TTTTCTTAGACCAATAAATAT
1 TTTTATTATACCAATAAATAT
* *
99493682 TTTTTTTATACCAA-AAATGT
1 TTTTATTATACCAATAAATAT
99493702 TATTTATTAT
1 T-TTTATTAT
99493712 TTTTAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTTATTATACCAATAAATAT
Found at i:99503240 original size:15 final size:15
Alignment explanation
Indices: 99503216--99503250 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
99503206 CCTATTTTCC
99503216 CTTTCCTTTTTCTTT
1 CTTTCCTTTTTCTTT
*
99503231 CTTTCTTTTTTCTTT
1 CTTTCCTTTTTCTTT
99503246 CTTTC
1 CTTTC
99503251 ATTCCCCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
CTTTCCTTTTTCTTT
Found at i:99503328 original size:18 final size:17
Alignment explanation
Indices: 99503305--99503362 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 17
99503295 TGCTTTATTT
99503305 TATATTTAATGATAGTAA
1 TATATTTAATGATA-TAA
99503323 TATATTATAAT-ATAATAA
1 TATATT-TAATGAT-ATAA
* *
99503341 TATAATAATATGATATAA
1 TATATTTA-ATGATATAA
99503359 TATA
1 TATA
99503363 ATATTATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
17 1 0.03
18 26 0.76
19 7 0.21
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (17 bp):
TATATTTAATGATATAA
Found at i:99503336 original size:5 final size:5
Alignment explanation
Indices: 99503320--99503366 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
99503310 TTAATGATAG
* *
99503320 TAATA TATTA TAATA TAATA -ATATAA TAATA TGATA TAATA TAATA T
1 TAATA TAATA TAATA TAATA TA-AT-A TAATA TAATA TAATA TAATA T
99503367 TATTCTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
4 1 0.03
5 30 0.86
6 3 0.09
7 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (5 bp):
TAATA
Found at i:99503340 original size:8 final size:8
Alignment explanation
Indices: 99503320--99503365 Score: 58
Period size: 8 Copynumber: 5.6 Consensus size: 8
99503310 TTAATGATAG
99503320 TAAT-ATA
1 TAATAATA
*
99503327 TTATAATA
1 TAATAATA
99503335 TAATAATA
1 TAATAATA
99503343 TAATAATA
1 TAATAATA
99503351 TGATATAATA
1 T-A-ATAATA
99503361 TAATA
1 TAATA
99503366 TTATTCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
7 3 0.09
8 22 0.65
9 2 0.06
10 7 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (8 bp):
TAATAATA
Found at i:99503346 original size:13 final size:13
Alignment explanation
Indices: 99503328--99503365 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
99503318 AGTAATATAT
99503328 TATAATATAATAA
1 TATAATATAATAA
*
99503341 TATAATA-ATATGA
1 TATAATATA-ATAA
99503354 TATAATATAATA
1 TATAATATAATA
99503366 TTATTCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:99503349 original size:26 final size:27
Alignment explanation
Indices: 99503311--99503365 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
99503301 ATTTTATATT
*
99503311 TAATGATAGTAATAT-ATTATAATATAA
1 TAATGATAATAATATGA-TATAATATAA
99503338 TAAT-ATAATAATATGATATAATATAA
1 TAATGATAATAATATGATATAATATAA
99503364 TA
1 TA
99503366 TTATTCTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (27 bp):
TAATGATAATAATATGATATAATATAA
Found at i:99506007 original size:36 final size:36
Alignment explanation
Indices: 99505942--99506017 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
99505932 TTATCTTTAT
* * **
99505942 TTTCATTTTGGAGAAAACCACATTCATTTCTCCATA
1 TTTCATTTTGGAGAAAACCACAATAATTTCTAAATA
* *
99505978 TTTCATTTTGGAGAAAACTATAATAATTTCTAAATA
1 TTTCATTTTGGAGAAAACCACAATAATTTCTAAATA
99506014 TTTC
1 TTTC
99506018 TCATTCCTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (36 bp):
TTTCATTTTGGAGAAAACCACAATAATTTCTAAATA
Found at i:99520471 original size:111 final size:112
Alignment explanation
Indices: 99520276--99520479 Score: 313
Period size: 111 Copynumber: 1.8 Consensus size: 112
99520266 GAAAAAATTT
* *
99520276 TTAGGAATGTGTTGGGCTAAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAA
1 TTAGGAATATGTTGGGCTAAGTAACCAGGGTGAGGTGCTTGGCTATCATCTCTCTTCGCATCAAA
* *
99520341 AGGTTTAATATATTTTTAAG-AAAAAAACATATATAAATATAATAAA
66 AGGTTCAATATATTCTTAAGCAAAAAAACATATATAAATATAATAAA
* * * *
99520387 TTAGGAGTATGTTGGGCTGAGTAACCGGGGT-AGGGTGCTTGGCTATCATCTCTCTTCGCGTCAA
1 TTAGGAATATGTTGGGCTAAGTAACCAGGGTGA-GGTGCTTGGCTATCATCTCTCTTCGCATCAA
99520451 AAGGTTCAATATATTCTTAAGCAAAAAAA
65 AAGGTTCAATATATTCTTAAGCAAAAAAA
99520480 TGAAAAGAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
110 1 0.01
111 75 0.90
112 7 0.08
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (112 bp):
TTAGGAATATGTTGGGCTAAGTAACCAGGGTGAGGTGCTTGGCTATCATCTCTCTTCGCATCAAA
AGGTTCAATATATTCTTAAGCAAAAAAACATATATAAATATAATAAA
Found at i:99522607 original size:53 final size:52
Alignment explanation
Indices: 99522542--99522691 Score: 184
Period size: 47 Copynumber: 3.0 Consensus size: 52
99522532 AACATGTGAC
* ** * *
99522542 ATGTGCTCCCGTATAAGACCATAGCTGGGCTATGGCATCAGTGAGATTTGATT
1 ATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCAGTGTGATTTGA-T
99522595 ATGTGCTTCCGTATAAGACCATATATGGGATATGGCATC-G-GTGA--T-AT
1 ATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCAGTGTGATTTGAT
* * *
99522642 ATGTGCTTCTGTGTAAGACCATATTTGGGATATGGCATCAGTGTGATTTG
1 ATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCAGTGTGATTTG
99522692 TGATTCATGT
Statistics
Matches: 84, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
47 37 0.44
48 2 0.02
49 5 0.06
51 4 0.05
52 1 0.01
53 35 0.42
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (52 bp):
ATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCAGTGTGATTTGAT
Found at i:99522648 original size:47 final size:46
Alignment explanation
Indices: 99522590--99522730 Score: 151
Period size: 47 Copynumber: 3.0 Consensus size: 46
99522580 CAGTGAGATT
99522590 TGATTATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCGG
1 TGATTATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCGG
* * *
99522636 TGATATATGTGCTTCTGTGTAAGACCATATTTGGGATATGGCATCAGTG
1 TGAT-TATGTGCTTCCGTATAAGACCATATATGGGATATGGCATC-G-G
* * * ** * *
99522685 TGATT-TGTGATT-CATGTAAGACCATGGATGGGCTATGGCTTCGG
1 TGATTATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCGG
99522729 TG
1 TG
99522731 TGTGACATGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
44 3 0.04
45 1 0.01
46 27 0.33
47 43 0.53
48 2 0.02
49 5 0.06
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.35
Consensus pattern (46 bp):
TGATTATGTGCTTCCGTATAAGACCATATATGGGATATGGCATCGG
Found at i:99525991 original size:15 final size:15
Alignment explanation
Indices: 99525971--99526011 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
99525961 GCATCACACA
99525971 GTTTGACACACGGTC
1 GTTTGACACACGGTC
99525986 GTTTGACACACGGTC
1 GTTTGACACACGGTC
* *
99526001 ATTTGTCACAC
1 GTTTGACACAC
99526012 AAGGGCTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (15 bp):
GTTTGACACACGGTC
Found at i:99532228 original size:31 final size:30
Alignment explanation
Indices: 99532175--99532233 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
99532165 TAGATGATCA
99532175 AGTCTATAAATATTATTAATTAATATTTTTG
1 AGTCTATAAATATTATTAATTAAT-TTTTTG
* *
99532206 AGTCTAT-TATATTGTTATATTAATTTTT
1 AGTCTATAAATATTATTA-ATTAATTTTT
99532234 GATCCAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
AGTCTATAAATATTATTAATTAATTTTTTG
Found at i:99532916 original size:12 final size:12
Alignment explanation
Indices: 99532899--99532933 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
99532889 CCGGCCCGCC
99532899 TATATTAATTTT
1 TATATTAATTTT
*
99532911 TATATTATTTTT
1 TATATTAATTTT
99532923 TATA-TAATTTT
1 TATATTAATTTT
99532934 AAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:99533175 original size:22 final size:22
Alignment explanation
Indices: 99533150--99533192 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
99533140 TATTTAAACA
99533150 ATAACAACAAAATAGTAGCAAT
1 ATAACAACAAAATAGTAGCAAT
* **
99533172 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
99533193 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAT
Found at i:99533196 original size:11 final size:11
Alignment explanation
Indices: 99533157--99533197 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
99533147 ACAATAACAA
99533157 CAAAATAGTAG
1 CAAAATAGTAG
* *
99533168 CAATATAATAG
1 CAAAATAGTAG
*
99533179 TAAAATAGTAG
1 CAAAATAGTAG
99533190 CAAAATAG
1 CAAAATAG
99533198 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:99534968 original size:31 final size:30
Alignment explanation
Indices: 99534931--99535013 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 30
99534921 AATTTTCAAA
99534931 AATTGAAAAGTACAAGGACTAAAATTAACC
1 AATTGAAAAGTACAAGGACTAAAATTAACC
*** * *
99534961 AACTTGAAAAGTATGTGGACTAAAATTGATC
1 AA-TTGAAAAGTACAAGGACTAAAATTAACC
* *
99534992 AA-AGAAAAGTACAAGTACTAAA
1 AATTGAAAAGTACAAGGACTAAA
99535014 TCAATAACTT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
29 15 0.36
30 2 0.05
31 25 0.60
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.22
Consensus pattern (30 bp):
AATTGAAAAGTACAAGGACTAAAATTAACC
Found at i:99535173 original size:28 final size:26
Alignment explanation
Indices: 99535130--99535184 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 26
99535120 TTTAAATTTG
99535130 AAAAATAGAATGACTAAATTCTTGAAAT
1 AAAAATAGAATGACTAAATT-TT-AAAT
99535158 AAAAATAGAAAT-ACTAAATTTTAAAT
1 AAAAATAG-AATGACTAAATTTTAAAT
99535184 A
1 A
99535185 TACAAAGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 5 0.19
27 2 0.08
28 16 0.62
29 3 0.12
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.29
Consensus pattern (26 bp):
AAAAATAGAATGACTAAATTTTAAAT
Found at i:99535921 original size:18 final size:19
Alignment explanation
Indices: 99535894--99535941 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
99535884 TTCCCATATA
* *
99535894 TTTTTCATTT-GTTAAGTT
1 TTTTTTATTTCGTTAAATT
*
99535912 TTTTTTATTTCTTTAAATT
1 TTTTTTATTTCGTTAAATT
99535931 TTTTTTATTTC
1 TTTTTTATTTC
99535942 TCTTTATCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTTTTATTTCGTTAAATT
Found at i:99535947 original size:21 final size:19
Alignment explanation
Indices: 99535905--99535942 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
99535895 TTTTCATTTG
*
99535905 TTAAGTTTTTTTTATTTCT
1 TTAAATTTTTTTTATTTCT
99535924 TTAAATTTTTTTTATTTCT
1 TTAAATTTTTTTTATTTCT
99535943 CTTTATCGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (19 bp):
TTAAATTTTTTTTATTTCT
Found at i:99538638 original size:210 final size:205
Alignment explanation
Indices: 99538265--99538683 Score: 766
Period size: 210 Copynumber: 2.0 Consensus size: 205
99538255 GTGGAGATGA
*
99538265 ACTTGTTCTCCTTACCTACTTGACTCCTATTCCTGAAAAGGAAGGGTAGCAGTTCTTAAGGTTGT
1 ACTTGTTCTCCTTACCTACTTGACTCCTATTCCTGAAAAGAAAGGGTAGCAGTTCTTAAGGTTGT
* *
99538330 AGCCTTAAGTATTATTTACATTTATTTATGTATTCCTCTTAAATAAGGCGCATCCACACCCATCA
66 AGCCTTAAGTATTATTTACATTTATTTATGTATGCCTCTCAAATAAGGCGCATCCACACCCATCA
99538395 AGATAATAAAAAACACTTTCGTTTAGATTTTGCATTGCATTTGCCCAAATCTTTTGATAAAGAGA
131 AGATAATAAAAAACACTTTCGTTTAGATTTTGCATTGCATTTGCCCAAATCTTTTGATAAAGAGA
99538460 TATTCAGATT
196 TATTCAGATT
99538470 ACTTGTTCTCCTTACCACCTACTTGACTCCTATTCCTGAAAAAGAAAGGGTAGCAGTTCTTAAGG
1 ACTTGTTCTCCTT---ACCTACTTGACTCCTATTCCTG-AAAAGAAAGGGTAGCAGTTCTTAAGG
99538535 TTGTAGCCTTAAGTATTATTTACATTTTATTTATGTATGCCTCTCAAATAAGGCGCATCCACACC
62 TTGTAGCCTTAAGTATTATTTACA-TTTATTTATGTATGCCTCTCAAATAAGGCGCATCCACACC
99538600 CATCAAGATAATAAAAAACACTTTCGTTTAGATTTTGCATTGCATTTGCCCAAATCTTTTGATAA
126 CATCAAGATAATAAAAAACACTTTCGTTTAGATTTTGCATTGCATTTGCCCAAATCTTTTGATAA
99538665 AGAGATATTCAGATT
191 AGAGATATTCAGATT
99538680 ACTT
1 ACTT
99538684 TATCAGTTTT
Statistics
Matches: 206, Mismatches: 3, Indels: 5
0.96 0.01 0.02
Matches are distributed among these distances:
205 13 0.06
208 22 0.11
209 49 0.24
210 122 0.59
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (205 bp):
ACTTGTTCTCCTTACCTACTTGACTCCTATTCCTGAAAAGAAAGGGTAGCAGTTCTTAAGGTTGT
AGCCTTAAGTATTATTTACATTTATTTATGTATGCCTCTCAAATAAGGCGCATCCACACCCATCA
AGATAATAAAAAACACTTTCGTTTAGATTTTGCATTGCATTTGCCCAAATCTTTTGATAAAGAGA
TATTCAGATT
Found at i:99544908 original size:23 final size:23
Alignment explanation
Indices: 99544882--99544929 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
99544872 ATAAAATAAC
99544882 CTAAAGAAAACTGAAAACTAAAA
1 CTAAAGAAAACTGAAAACTAAAA
* ** *
99544905 CTAAATAAAGTTGCAAACTAAAA
1 CTAAAGAAAACTGAAAACTAAAA
99544928 CT
1 CT
99544930 TGAATAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.19
Consensus pattern (23 bp):
CTAAAGAAAACTGAAAACTAAAA
Found at i:99546878 original size:21 final size:22
Alignment explanation
Indices: 99546854--99546895 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
99546844 CTTTTTTTTC
99546854 TTTTTTGGTCACCCAATTATCT
1 TTTTTTGGTCACCCAATTATCT
**
99546876 TTTTTTTTTCACCCAATTAT
1 TTTTTTGGTCACCCAATTAT
99546896 TGCCCTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.21, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTTTGGTCACCCAATTATCT
Found at i:99550085 original size:16 final size:16
Alignment explanation
Indices: 99550066--99550111 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
99550056 ATTTAAATAT
99550066 TTATAATTGATTTTAA
1 TTATAATTGATTTTAA
99550082 TTATAATTGATTTTAA
1 TTATAATTGATTTTAA
*
99550098 TTTTAATTG-TTTTA
1 TTATAATTGATTTTA
99550112 TACATATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 5 0.17
16 24 0.83
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (16 bp):
TTATAATTGATTTTAA
Found at i:99550346 original size:15 final size:14
Alignment explanation
Indices: 99550317--99550343 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99550307 TTCTCAAAGT
99550317 TTTTTTAATATTTA
1 TTTTTTAATATTTA
99550331 TTTTTTAATATTT
1 TTTTTTAATATTT
99550344 TATAACTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTAATATTTA
Found at i:99573565 original size:17 final size:18
Alignment explanation
Indices: 99573538--99573603 Score: 73
Period size: 17 Copynumber: 3.6 Consensus size: 18
99573528 AGGTATGTAC
99573538 GATACCTATGTGGTAGAT
1 GATACCTATGTGGTAGAT
* *
99573556 GATA-CTATGTATGTATGTAC
1 GATACCTATGT-GGTA-G-AT
99573576 GATACCTATGTGGTAGAT
1 GATACCTATGTGGTAGAT
99573594 GATA-CTATGT
1 GATACCTATGT
99573604 ATGTGAAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 12 0.30
18 12 0.30
19 2 0.05
20 8 0.20
21 6 0.15
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (18 bp):
GATACCTATGTGGTAGAT
Found at i:99573569 original size:21 final size:21
Alignment explanation
Indices: 99573544--99573608 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
99573534 GTACGATACC
99573544 TATGTGGTAGATGATACTATG
1 TATGTGGTAGATGATACTATG
* * *
99573565 TATGT-AT-GTACGATAC---C
1 TATGTGGTAG-ATGATACTATG
99573582 TATGTGGTAGATGATACTATG
1 TATGTGGTAGATGATACTATG
99573603 TATGTG
1 TATGTG
99573609 AAGCTCATTG
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 5 0.16
18 7 0.22
19 2 0.06
20 7 0.22
21 11 0.34
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (21 bp):
TATGTGGTAGATGATACTATG
Found at i:99573577 original size:38 final size:38
Alignment explanation
Indices: 99573530--99573607 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
99573520 GAAGATTCAG
99573530 GTATGTACGATACCTATGTGGTAGATGATACTATGTAT
1 GTATGTACGATACCTATGTGGTAGATGATACTATGTAT
99573568 GTATGTACGATACCTATGTGGTAGATGATACTATGTAT
1 GTATGTACGATACCTATGTGGTAGATGATACTATGTAT
99573606 GT
1 GT
99573608 GAAGCTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.37
Consensus pattern (38 bp):
GTATGTACGATACCTATGTGGTAGATGATACTATGTAT
Found at i:99573784 original size:27 final size:27
Alignment explanation
Indices: 99573746--99573800 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
99573736 TTTGTATGTG
*
99573746 TTTGCATTATTTTATAGATATCGAAGC
1 TTTGCATTATTTTATAGATATCAAAGC
99573773 TTTGCATTATTTTATAGATATCAAAGC
1 TTTGCATTATTTTATAGATATCAAAGC
99573800 T
1 T
99573801 ATTACAAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (27 bp):
TTTGCATTATTTTATAGATATCAAAGC
Found at i:99581961 original size:29 final size:29
Alignment explanation
Indices: 99581919--99581988 Score: 131
Period size: 29 Copynumber: 2.4 Consensus size: 29
99581909 CGGCTTAGAT
99581919 ACACGGGCGTGTCTAAAGTCGTGTGAGGC
1 ACACGGGCGTGTCTAAAGTCGTGTGAGGC
*
99581948 ACACGGGCGTGTCTAAGGTCGTGTGAGGC
1 ACACGGGCGTGTCTAAAGTCGTGTGAGGC
99581977 ACACGGGCGTGT
1 ACACGGGCGTGT
99581989 GACCTTTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.19, C:0.21, G:0.40, T:0.20
Consensus pattern (29 bp):
ACACGGGCGTGTCTAAAGTCGTGTGAGGC
Found at i:99590762 original size:24 final size:23
Alignment explanation
Indices: 99590735--99590782 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
99590725 TACCTATTAT
99590735 TGGCTCACATAAGCTTCCCGGTTA
1 TGGCTCACATAAGCTTCCC-GTTA
** *
99590759 TGGCTCTTATGAGCTTCCCGTTA
1 TGGCTCACATAAGCTTCCCGTTA
99590782 T
1 T
99590783 ATAGCCCGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (23 bp):
TGGCTCACATAAGCTTCCCGTTA
Found at i:99594600 original size:6 final size:6
Alignment explanation
Indices: 99594589--99594627 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
99594579 TATTTATTTA
99594589 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTT
99594628 CTTTTATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:99594640 original size:18 final size:18
Alignment explanation
Indices: 99594589--99594641 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
99594579 TATTTATTTA
* *
99594589 TTTTTCTTTTTCTTTTTC
1 TTTTTCTTATTATTTTTC
* *
99594607 TTTTTCTTTTTCTTTTTC
1 TTTTTCTTATTATTTTTC
99594625 TTTCTT-TTATTATTTTT
1 TTT-TTCTTATTATTTTT
99594642 ACTAGTATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 30 0.94
19 2 0.06
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTCTTATTATTTTTC
Found at i:99596257 original size:70 final size:70
Alignment explanation
Indices: 99596140--99596275 Score: 254
Period size: 70 Copynumber: 1.9 Consensus size: 70
99596130 ATTAATTTAT
*
99596140 AAATATTTGTGCATTGGTTGAGCATGGAGCATTGTGTTCTAAAGTTGTGATAAATGAAAATGTAC
1 AAATATTTGTGCATTGGTTGAGCATGGAGCATTGTGTTCTAAAGTTGTGATAAATAAAAATGTAC
99596205 CTTAC
66 CTTAC
*
99596210 AAATATTTGTGCATTGGTTGAGCATGGAGCATTGTGTTCTAACGTTGTGATAAATAAAAATGTAC
1 AAATATTTGTGCATTGGTTGAGCATGGAGCATTGTGTTCTAAAGTTGTGATAAATAAAAATGTAC
99596275 C
66 C
99596276 CTCTGTGTTT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (70 bp):
AAATATTTGTGCATTGGTTGAGCATGGAGCATTGTGTTCTAAAGTTGTGATAAATAAAAATGTAC
CTTAC
Found at i:99599774 original size:22 final size:22
Alignment explanation
Indices: 99599749--99599802 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
99599739 ACTTAATTTT
99599749 TAAAATTTAAAAAATAAATAA-A
1 TAAAATTTAAAAAATAAA-AATA
**
99599771 TAAAATTTTCAAAATAAAAATA
1 TAAAATTTAAAAAATAAAAATA
*
99599793 TAAAAATTAA
1 TAAAATTTAA
99599803 TTTTAAATAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAATTTAAAAAATAAAAATA
Found at i:99614150 original size:24 final size:24
Alignment explanation
Indices: 99614098--99614164 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
99614088 TAAAAAATAA
* **
99614098 AAAATACATA-AAATATAGGAATT
1 AAAATAAATATAAATATAAAAATT
99614121 ATAAATAAATATAAATATAAAAATT
1 A-AAATAAATATAAATATAAAAATT
* *
99614146 AAAATATATATAATTATAA
1 AAAATAAATATAAATATAA
99614165 TTTAATAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 1 0.03
24 24 0.65
25 12 0.32
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (24 bp):
AAAATAAATATAAATATAAAAATT
Found at i:99620104 original size:2 final size:2
Alignment explanation
Indices: 99620091--99620136 Score: 74
Period size: 2 Copynumber: 22.0 Consensus size: 2
99620081 TTTATCATCT
99620091 TA TA TA TCA TA TA TA TA TA TCA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
99620135 TA
1 TA
99620137 ACCTTCATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 38 0.90
3 4 0.10
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:99620111 original size:25 final size:25
Alignment explanation
Indices: 99620083--99620135 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
99620073 TAAAATAATT
*
99620083 TATCATCT-TATATATCATATATATA
1 TATCATATATATATAT-ATATATATA
99620108 TATCATATATATATATATATATATA
1 TATCATATATATATATATATATATA
99620133 TAT
1 TAT
99620136 AACCTTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (25 bp):
TATCATATATATATATATATATATA
Found at i:99621385 original size:85 final size:84
Alignment explanation
Indices: 99621241--99621428 Score: 245
Period size: 85 Copynumber: 2.2 Consensus size: 84
99621231 TGTAAAAGAT
* * * *
99621241 TCTCAAATTTTTAAAAAATAATAATTAAGTCATTGTTTTTTTCATTCATTTGGATATTTAAAATT
1 TCTCAAATTTTTAAAAAATAATAATTAAGTCATTATTTTTTTCACTCAATTAGATATTTAAAATT
99621306 TTAAAATATATAAAAAAGC
66 TTAAAATATATAAAAAAGC
* * *
99621325 TCTCAAATATTTTAAAAAAT-TTAATTAAGTCCTTATTTTTTTACACTCAATTAGATATTTAAAT
1 TCTCAAAT-TTTTAAAAAATAATAATTAAGTCATTATTTTTTT-CACTCAATTAGATATTTAAAA
* *
99621389 TTTTAAAATGTATAAAAAATC
64 TTTTAAAATATATAAAAAAGC
99621410 -CTCAAACTTTTTCAAAAAA
1 TCTCAAA-TTTTT-AAAAAA
99621429 AAAGGCCCTG
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
84 37 0.41
85 54 0.59
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (84 bp):
TCTCAAATTTTTAAAAAATAATAATTAAGTCATTATTTTTTTCACTCAATTAGATATTTAAAATT
TTAAAATATATAAAAAAGC
Found at i:99621554 original size:21 final size:22
Alignment explanation
Indices: 99621502--99621554 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
99621492 AAATATTATT
*
99621502 AATTT-TAATAAAAGTATTAAA
1 AATTTGTAAAAAAAGTATTAAA
* *
99621523 AATTAGAAAAAAAAGTA-TAAA
1 AATTTGTAAAAAAAGTATTAAA
99621544 AATTTGTAAAA
1 AATTTGTAAAA
99621555 TTTTATAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (22 bp):
AATTTGTAAAAAAAGTATTAAA
Found at i:99621781 original size:10 final size:10
Alignment explanation
Indices: 99621766--99621803 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
99621756 GGGGTAGTTA
99621766 AATTTTTTAT
1 AATTTTTTAT
99621776 AATTTTTTAT
1 AATTTTTTAT
*
99621786 AA-ATTTTA-
1 AATTTTTTAT
99621794 AATTTTTTAT
1 AATTTTTTAT
99621804 TAAAATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.08
9 10 0.42
10 12 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
AATTTTTTAT
Found at i:99621976 original size:88 final size:89
Alignment explanation
Indices: 99621879--99622046 Score: 223
Period size: 89 Copynumber: 1.9 Consensus size: 89
99621869 GAGCAAGGGT
* * * * * *
99621879 TTAATTATTTTTTT-GAACATTTTTTAGGGT-TTTTTTAATGCATTTTAAAAGTTCAAGTACCCA
1 TTAATTATTTTTTTCGAAAAATTTTGAGGATATTTTTGAA-GCATTTTAAAAATTCAAGTACCCA
99621942 ATCGAGTGAAAAAAAAAGTAGGAAC
65 ATCGAGTGAAAAAAAAAGTAGGAAC
* * *
99621967 TTAATTATTTTTTTCGAAAAATTTTGAGGATATTTTTGAAGTATTTTAAAAATTCAAGTGCTCAA
1 TTAATTATTTTTTTCGAAAAATTTTGAGGATATTTTTGAAGCATTTTAAAAATTCAAGTACCCAA
*
99622032 TTGAGTGAAAAAAAA
66 TCGAGTGAAAAAAAA
99622047 GCATAATTAC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
88 14 0.21
89 47 0.69
90 7 0.10
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.40
Consensus pattern (89 bp):
TTAATTATTTTTTTCGAAAAATTTTGAGGATATTTTTGAAGCATTTTAAAAATTCAAGTACCCAA
TCGAGTGAAAAAAAAAGTAGGAAC
Found at i:99623456 original size:10 final size:10
Alignment explanation
Indices: 99623441--99623474 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
99623431 TAACTTGTAC
99623441 AAAAAAAAGG
1 AAAAAAAAGG
*
99623451 AAAAAAAAAGA
1 -AAAAAAAAGG
99623462 AAAAAAAAGG
1 AAAAAAAAGG
99623472 AAA
1 AAA
99623475 TGCAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGG
Found at i:99623457 original size:11 final size:11
Alignment explanation
Indices: 99623441--99623474 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
99623431 TAACTTGTAC
99623441 AAAAAAAAGGA
1 AAAAAAAAGGA
99623452 AAAAAAAA-GA
1 AAAAAAAAGGA
99623462 AAAAAAAAGGA
1 AAAAAAAAGGA
99623473 AA
1 AA
99623475 TGCAAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGGA
Found at i:99631113 original size:18 final size:19
Alignment explanation
Indices: 99631090--99631128 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
99631080 TAAAAGTGTG
99631090 ATTATGAT-TATTTTCAAT
1 ATTATGATATATTTTCAAT
* *
99631108 ATTATGTTATATTTTGAAT
1 ATTATGATATATTTTCAAT
99631127 AT
1 AT
99631129 CATTTATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (19 bp):
ATTATGATATATTTTCAAT
Found at i:99632349 original size:54 final size:54
Alignment explanation
Indices: 99632267--99632373 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 54
99632257 GCAGATGGGG
* *
99632267 ATAAAGCATAAAAGTTAAAGGGTAAACAGATTGAAGGGAAAAGGAAAAAAAAAA
1 ATAAAGCATAAAAGTTAAAAGGTAAACAGATTGAAGGGAAAAAGAAAAAAAAAA
*
99632321 ATAAAGCCTAAAAGTTAAAAGGTAAACAGATTGAAGGGAAAAAGAAAAAAAAA
1 ATAAAGCATAAAAGTTAAAAGGTAAACAGATTGAAGGGAAAAAGAAAAAAAAA
99632374 TGGTGAGATT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.62, C:0.05, G:0.21, T:0.13
Consensus pattern (54 bp):
ATAAAGCATAAAAGTTAAAAGGTAAACAGATTGAAGGGAAAAAGAAAAAAAAAA
Found at i:99641880 original size:7 final size:7
Alignment explanation
Indices: 99641868--99641899 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
99641858 AGTAGTAGAA
99641868 GAGAGTT
1 GAGAGTT
99641875 GAGAGTT
1 GAGAGTT
99641882 GAGAGTT
1 GAGAGTT
99641889 GAGAGTT
1 GAGAGTT
99641896 GAGA
1 GAGA
99641900 TAAAAAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.25
Consensus pattern (7 bp):
GAGAGTT
Found at i:99644732 original size:131 final size:130
Alignment explanation
Indices: 99644570--99644963 Score: 452
Period size: 131 Copynumber: 3.0 Consensus size: 130
99644560 GGATTTGAAG
** * *
99644570 AACATGGGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAAGAGATCGCGATCCAGCA
1 AACATGGGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGC-AACCAGCA
* *
99644635 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAGAGAATTTTTAA
65 CGATAGGGCACGATTCCACGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTAA
99644700 A
130 A
* * * * *
99644701 GACATGGGTGAAATT-TCAAAGGAATATTCGATTGTTTTGAACGAATGAGAAATCACAACCTAAC
1 AACATGGGTGAAATTCT-AAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACC-AGC
* ** *
99644765 ACGATAGGGCACGATT-CTCGAATTGCCAAACATCGAGTATCACCTTTGTTTT-GAAGAATTTTT
64 ACGATAGGGCACGATTCCACGAATTGCCAAACATCGAACATCACCTTCGTTTTAG-AGAATTTTT
99644828 AGAA
128 A-AA
* * * * *
99644832 AACATGGATGAAATTCTAAAGGGACATTCGATTATTTTGAGCAAATGAGAAATTGCAACCCAGCA
1 AACATGGGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAA-CCAGCA
* * * * * * ** *
99644897 CGTTAGGGCACGATTCTACAAATTGTCAAATATCAAACATCGTCTTCGTTTTAAAGAATTTTTAA
65 CGATAGGGCACGATTCCACGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTAA
99644962 A
130 A
99644963 A
1 A
99644964 GAATGATTAT
Statistics
Matches: 218, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
129 1 0.00
130 45 0.21
131 134 0.61
132 38 0.17
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.28
Consensus pattern (130 bp):
AACATGGGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCAGCAC
GATAGGGCACGATTCCACGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTAAA
Found at i:99650934 original size:133 final size:134
Alignment explanation
Indices: 99650695--99650953 Score: 346
Period size: 133 Copynumber: 1.9 Consensus size: 134
99650685 CAAGTCTCCT
* *
99650695 TGAAGTTGCAGTGAAGCAGATTGAAGACGACGAATCTTGTGTTCCTGAAGATTGCAGCGAAGCAG
1 TGAAGTTGCAGTGAAGCAGATCGAAGACGACGAATCTTGTCTTCCTGAAGATTGCAGCGAAGCAG
* ** * * * *
99650760 GCTTAAGCCATTATCATATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATATTGTAGATCTTGTT
66 GATTAAGCCACCATCATATCTCCCTAAAGTTGTAGTAGAGTAGGCTAAAGATTGCAGATCTTGTT
99650825 TCCC
131 TCCC
* * *
99650829 TGAAGTTGCAGTGGAGCAGATCGAAGACG--GTAGATCTTGTCTTCTTGAAG-TTGCAGTGAAGC
1 TGAAGTTGCAGTGAAGCAGATCGAAGACGACG-A-ATCTTGTCTTCCTGAAGATTGCAGCGAAGC
*
99650891 A-GATATAAGCCACCATCCTATCTCCCTAAAGTTGTAGTAGAGTAGGCTAAAGATTGCAGATCT
64 AGGAT-TAAGCCACCATCATATCTCCCTAAAGTTGTAGTAGAGTAGGCTAAAGATTGCAGATCT
99650954 GGTCTCCAGG
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
132 3 0.03
133 64 0.59
134 42 0.39
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (134 bp):
TGAAGTTGCAGTGAAGCAGATCGAAGACGACGAATCTTGTCTTCCTGAAGATTGCAGCGAAGCAG
GATTAAGCCACCATCATATCTCCCTAAAGTTGTAGTAGAGTAGGCTAAAGATTGCAGATCTTGTT
TCCC
Found at i:99653971 original size:131 final size:130
Alignment explanation
Indices: 99653728--99654118 Score: 403
Period size: 131 Copynumber: 3.0 Consensus size: 130
99653718 TAATCATTCT
* * * *
99653728 TTTAAAAATTCTTTAAAAC-AAAGACGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
1 TTTAAAAATTCTTCAAAACGAAAG-TGATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCT-A
* * * * * *
99653792 T-GTGCTGGGTTGCAATTTCTCATTTGCTCAAATAATCGAATGTCCCTTTAGAATTTCATCCATG
64 TCGTGCTGGGTTGCGATTTCCCATTCGCTCAAACAATCGAATATCCCTTTAGAATTTCACCCATG
*
99653856 TT
129 TC
** * *
99653858 TTCTAAAAATTCTTCAAAACGAAAGTGATACTCGATGTTTGGAAATTAG-GGAATCGTGCCCTAT
1 TT-TAAAAATTCTTCAAAACGAAAGTGATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTAT
* * * * *
99653922 CGTGCTGGGTTTCGATTTCCCATTCGCTCTAAACAATTGAGTATTCCTTTGGAATTTCACCCATG
65 CGTGCTGGGTTGCGATTTCCCATTCGCTC-AAACAATCGAATATCCCTTTAGAATTTCACCCATG
99653987 TC
129 TC
* * *
99653989 TTTAAAAATTC-TCTAAAACGAAGGTAATGTTCGATGTTTAGCAATTCGAGGAATCGTGCCCTAT
1 TTTAAAAATTCTTC-AAAACGAAAGTGATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTAT
* ** * * * * * * *
99654053 CGTGCTGGGTTGCGATCTCCTGTTTGTTCAAAATAATCGAATATTCTTTTATAATTTCACTCATG
65 CGTGCTGGGTTGCGATTTCCCATTCGCTC-AAACAATCGAATATCCCTTTAGAATTTCACCCATG
99654118 T
129 T
99654119 TCTTCAAATC
Statistics
Matches: 215, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
129 4 0.02
130 75 0.35
131 132 0.61
132 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTCAAAACGAAAGTGATGTTCGATGTTTGGCAATTCGAGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCCCATTCGCTCAAACAATCGAATATCCCTTTAGAATTTCACCCATGTC
Found at i:99662846 original size:21 final size:21
Alignment explanation
Indices: 99662822--99662865 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
99662812 TTCTGTTCTG
*
99662822 CTCCGCCTCCCTCTCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
99662843 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
99662864 CT
1 CT
99662866 TCGCTCTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.57, G:0.16, T:0.27
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:99664497 original size:23 final size:22
Alignment explanation
Indices: 99664471--99664518 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
99664461 AATAGTAAAT
*
99664471 ATAA-AATAGTTAAATTATATAAC
1 ATAACAAT-GTTAAAAT-TATAAC
99664494 ATAACCAATGTTAAAATTATAAC
1 ATAA-CAATGTTAAAATTATAAC
99664517 AT
1 AT
99664519 TACATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 12 0.55
24 7 0.32
25 3 0.14
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.33
Consensus pattern (22 bp):
ATAACAATGTTAAAATTATAAC
Found at i:99668425 original size:9 final size:9
Alignment explanation
Indices: 99668411--99668469 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
99668401 ATGTATTAGT
99668411 TAAGTTATG
1 TAAGTTATG
99668420 TAAGTTGTTATG
1 TAA---GTTATG
*
99668432 TACGTTATG
1 TAAGTTATG
*
99668441 TAA-ATATG
1 TAAGTTATG
99668449 TAAGTTATG
1 TAAGTTATG
*
99668458 TGAGTTATG
1 TAAGTTATG
99668467 TAA
1 TAA
99668470 CGCCCCAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
8 7 0.17
9 25 0.62
12 8 0.20
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:99668834 original size:26 final size:26
Alignment explanation
Indices: 99668797--99668932 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
99668787 TGATACAAAT
* *
99668797 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99668823 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
99668849 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99668875 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99668901 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99668927 TGATAA
1 TGATAA
99668933 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:99670962 original size:137 final size:137
Alignment explanation
Indices: 99670716--99671002 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
99670706 GAGTAGTCTC
99670716 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
99670781 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTTGCCCAGTACC
66 TATTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
99670846 ACTGTTA
131 ACTGTTA
99670853 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
99670918 TGTTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TATTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
99670983 ACTGTTA
131 ACTGTTA
**
99670990 CCTGAATGGGCTT
1 CCCAAATGGGCTT
99671003 AGGCCTAATA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TATTATCTGAATAAGGGGCTAAGACCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:99671746 original size:21 final size:21
Alignment explanation
Indices: 99671719--99671785 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
99671709 GTGCTACAAG
99671719 TTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTGTTATGTAAA
* * *
99671740 CTATGTAA---GTTATGTGAG
1 TTATGTAAGTTGTTATGTAAA
*
99671758 TTATGTAAGTTGTTATGGAAA
1 TTATGTAAGTTGTTATGTAAA
99671779 TTATGTA
1 TTATGTA
99671786 TGTTATATGA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 15 0.42
21 21 0.58
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.45
Consensus pattern (21 bp):
TTATGTAAGTTGTTATGTAAA
Found at i:99671753 original size:9 final size:9
Alignment explanation
Indices: 99671716--99671824 Score: 74
Period size: 9 Copynumber: 11.4 Consensus size: 9
99671706 GGGGTGCTAC
99671716 AAGTTATGT
1 AAGTTATGT
99671725 AAGTTGTTATGT
1 AA---GTTATGT
**
99671737 AAACTATGT
1 AAGTTATGT
99671746 AAGTTATGT
1 AAGTTATGT
*
99671755 GAGTTATGT
1 AAGTTATGT
*
99671764 AAGTTGTTATGG
1 AA---GTTATGT
*
99671776 AAATTATGT
1 AAGTTATGT
* *
99671785 ATGTTATAT
1 AAGTTATGT
*
99671794 GAGTTATGT
1 AAGTTATGT
99671803 AAGTTATGT
1 AAGTTATGT
* *
99671812 AATTTATTT
1 AAGTTATGT
99671821 AAGT
1 AAGT
99671825 AATGATCAAT
Statistics
Matches: 75, Mismatches: 19, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
9 58 0.77
12 17 0.23
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
AAGTTATGT
Found at i:99671771 original size:39 final size:39
Alignment explanation
Indices: 99671717--99671807 Score: 146
Period size: 39 Copynumber: 2.3 Consensus size: 39
99671707 GGGTGCTACA
* *
99671717 AGTTATGTAAGTTGTTATGTAAACTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGGAAACTATGTAAGTTATATG
* *
99671756 AGTTATGTAAGTTGTTATGGAAATTATGTATGTTATATG
1 AGTTATGTAAGTTGTTATGGAAACTATGTAAGTTATATG
99671795 AGTTATGTAAGTT
1 AGTTATGTAAGTT
99671808 ATGTAATTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.45
Consensus pattern (39 bp):
AGTTATGTAAGTTGTTATGGAAACTATGTAAGTTATATG
Found at i:99672433 original size:240 final size:241
Alignment explanation
Indices: 99672003--99672488 Score: 893
Period size: 240 Copynumber: 2.0 Consensus size: 241
99671993 TTAAGGTTAT
*
99672003 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAAAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
99672068 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
99672133 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATATTTAAAATATTTAAAATAAGGTTGGAGAGAA
99672198 GGTAAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACACGGTA
196 GGTAAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACACGGTA
99672244 ATAAAT-TTCAATAGTAAATGAGATCGATAAAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAAAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
99672308 TCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
99672373 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATATTTAAAATATTTAAAATAATGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATATTTAAAATATTTAAAATAAGGTTGGAGAGAA
* * * *
99672438 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGTTA
196 GGTAAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACACGGTA
99672484 ATAAA
1 ATAAA
99672489 ATTAATTCAT
Statistics
Matches: 237, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
240 231 0.97
241 6 0.03
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAAAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATATTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTAAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACACGGTA
Found at i:99678575 original size:17 final size:18
Alignment explanation
Indices: 99678553--99678589 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
99678543 CGATTAAGTA
99678553 ATTCCAGTA-TTCA-ATTT
1 ATTCCA-TAGTTCATATTT
99678570 ATTCCATAGTTCATATTT
1 ATTCCATAGTTCATATTT
99678588 AT
1 AT
99678590 GCAAAATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 10 0.56
18 6 0.33
ACGTcount: A:0.30, C:0.16, G:0.05, T:0.49
Consensus pattern (18 bp):
ATTCCATAGTTCATATTT
Found at i:99683919 original size:304 final size:303
Alignment explanation
Indices: 99683104--99684026 Score: 1350
Period size: 307 Copynumber: 3.0 Consensus size: 303
99683094 TCTTTGTGGA
*
99683104 TATTCTAGATTATTCTTTCTTACTGCTGATTTTGT-ATTGAATTACCTTGCAATCTTTTTTTTTG
1 TATTCTAGATTATTCTTTCTTACTGCTGATTTTGTGA-TGAATTACCTTGCAATATTTTTTTTTG
* *
99683168 CTGGTCTTGGGTAAGTTTGGGTTCATAGCTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATA
65 CTGGTCTTGGGTAAGTTTTGGTTCA-AGCTAATTGGTTAGTAGCTTTTG-TTTCTTTAAACTATA
* * *
99683233 TTTCTATGTTTTTAGTTTTATCTGTTTAGTACTTGGAGACTCTACATTATTAATTGTATTTCTGA
128 TTTCTATGTTATTAGTTTTATCTGCTTGGTACTTGGAGACTCTACATTATTAATTGTATTTCTGA
* *
99683298 TATGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCGTTTT
193 TGTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTT
* * *
99683363 ATTTCTATGCTCTGCATAG-TACTGCTGGTGAAAAGAGTCTTCTTTTTT
258 ATTTCTTTGCTCTGCAT-GTTATTGCTGGTGAAAAG-GTCTTC-CTTTT
* * * *
99683411 TATTCCAAATTATTCTTTCTTATTGCTGATTTTGTGCTGAATTACCTTGCAATATTTCTTTTTTG
1 TATTCTAGATTATTCTTTCTTACTGCTGATTTTGTGATGAATTACCTTGCAATATTT-TTTTTTG
* * *
99683476 TTGGTCTTGGGTAAGTTTTGGTTCAAGCTAATTGGTTAATAGCTTTTGTATTCTTTAAACTGTAT
65 CTGGTCTTGGGTAAGTTTTGGTTCAAGCTAATTGGTTAGTAGCTTTTGT-TTCTTTAAACTATAT
* *
99683541 TTCTATGTTATTAGTTTTATCTGCTTGGTACTTTGAGACTCTACATTATTAATTGTATATCTGAT
129 TTCTATGTTATTAGTTTTATCTGCTTGGTACTTGGAGACTCTACATTATTAATTGTATTTCTGAT
* **
99683606 GTAGGTTTTGCATAATTTCTATTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTA
194 GTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTA
* * *
99683671 TTTTTTTGCTCTGCATGTTATTGCAGGTGAAAAGGGCATTCCTTTT
259 TTTCTTTGCTCTGCATGTTATTGCTGGTGAAAAGGTC-TTCCTTTT
* * *
99683717 TATTCTAGATTATTCTTTCTTACTGCTGATTTTGTGATGAACTACCTTACAAT-TTTTGTTTT-C
1 TATTCTAGATTATTCTTTCTTACTGCTGATTTTGTGATGAATTACCTTGCAATATTTTTTTTTGC
* * *
99683780 TGGTCTTGGGTAAATTTTGGTTCAGAACTAATTGGTTAGTAGCTTTTGCTTTCTTTAAACTATAC
66 TGGTCTTGGGTAAGTTTTGGTTCA-AGCTAATTGGTTAGTAGCTTTTG-TTTCTTTAAACTATAT
* * *
99683845 CTCTATGTTATTAGTTTTATCTGCTTGGTACTTGGAGACTCTACATGATTAATTGTATTTCTAAT
129 TTCTATGTTATTAGTTTTATCTGCTTGGTACTTGGAGACTCTACATTATTAATTGTATTTCTGAT
* *
99683910 GTGGGTTTTGCATAATTTCTGCTAAGAACTTGGTTTTACTCAAATTTGGATCTAAAACCATTTTA
194 GTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTA
* * *
99683975 TTTCTTCGCTCTACATGTTATTGCTGGTGAAAATGTCTTTCCTTTT
259 TTTCTTTGCTCTGCATGTTATTGCTGGTGAAAAGGTC-TTCCTTTT
99684021 TATTCT
1 TATTCT
99684027 TTTGTAATTA
Statistics
Matches: 553, Mismatches: 56, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
303 23 0.04
304 204 0.37
305 4 0.01
306 55 0.10
307 237 0.43
308 30 0.05
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (303 bp):
TATTCTAGATTATTCTTTCTTACTGCTGATTTTGTGATGAATTACCTTGCAATATTTTTTTTTGC
TGGTCTTGGGTAAGTTTTGGTTCAAGCTAATTGGTTAGTAGCTTTTGTTTCTTTAAACTATATTT
CTATGTTATTAGTTTTATCTGCTTGGTACTTGGAGACTCTACATTATTAATTGTATTTCTGATGT
GGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTATT
TCTTTGCTCTGCATGTTATTGCTGGTGAAAAGGTCTTCCTTTT
Found at i:99688060 original size:17 final size:19
Alignment explanation
Indices: 99688024--99688060 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
99688014 ATTCTGACCC
*
99688024 TATCTCACAAAAATTTAAA
1 TATCTCACAAAAATTGAAA
99688043 TATCTCA-AAAAA-TGAAA
1 TATCTCACAAAAATTGAAA
99688060 T
1 T
99688061 TCTTTTACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 5 0.29
19 7 0.41
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.30
Consensus pattern (19 bp):
TATCTCACAAAAATTGAAA
Found at i:99688500 original size:51 final size:50
Alignment explanation
Indices: 99688427--99688622 Score: 205
Period size: 51 Copynumber: 3.9 Consensus size: 50
99688417 CTTGTAACCG
* *
99688427 AAACTATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGATC
1 AAACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
* * *
99688477 AAAGT-TGTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 AAACTAT-CT-GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
* * * *
99688528 TAACTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGAACT
1 AAACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG-ACC
* *** * * *
99688579 ACAACCATCTTAAACACATAGTAGCCTACACATAGTACTACACA
1 A-AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
99688623 TGTGTTCTCA
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 40 0.33
51 44 0.36
52 38 0.31
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
AAACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
Found at i:99688562 original size:50 final size:50
Alignment explanation
Indices: 99688428--99688622 Score: 203
Period size: 50 Copynumber: 3.8 Consensus size: 50
99688418 TTGTAACCGA
** * * *
99688428 AACTATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGATCA
1 AACTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGAACT
* * * * * *
99688478 AAGT-TGTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 AACTAT-CT-GGTACACATAGTAGCCTACACTTAGTACTACACACGTGAACT
99688529 AACTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGAACT
1 AACTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGAACT
* *** *
99688579 ACAACCATCTTAAACACATAGTAGCCTACACATAGTACTACACA
1 --AACTATCTGGTACACATAGTAGCCTACACTTAGTACTACACA
99688623 TGTGTTCTCA
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 42 0.34
51 42 0.34
52 38 0.31
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
AACTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGAACT
Found at i:99688607 original size:52 final size:50
Alignment explanation
Indices: 99688493--99688622 Score: 170
Period size: 52 Copynumber: 2.6 Consensus size: 50
99688483 GTTGGGTACG
* * * * **
99688493 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACA
1 CATAGTAGCCTACACTTAGTACTACACACGTGAACTAACCATCTGAAACA
*
99688543 CATAGTAGCCTACACTTAGTACTACACACGTGAACTACAACCATCTTAAACA
1 CATAGTAGCCTACACTTAGTACTACACACGTGAACT--AACCATCTGAAACA
*
99688595 CATAGTAGCCTACACATAGTACTACACA
1 CATAGTAGCCTACACTTAGTACTACACA
99688623 TGTGTTCTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
50 33 0.47
52 37 0.53
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTACACTTAGTACTACACACGTGAACTAACCATCTGAAACA
Found at i:99696787 original size:57 final size:57
Alignment explanation
Indices: 99696708--99696846 Score: 161
Period size: 57 Copynumber: 2.4 Consensus size: 57
99696698 GCTACAATTG
* * * *
99696708 GGATTTAGCCTGGACTAGTAATCCTAATTGAGCTTTTCTGAGCATATGTTACAGAAA
1 GGATTCAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAAA
* * * * * ** *
99696765 GGATTCAGCTTGGATTGTTAATCCTTATTAAGCTCTTGTGAGCATATGTTGGAGACA
1 GGATTCAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAAA
*
99696822 GGATTTAGCCTGGACTGGTAATCCT
1 GGATTCAGCCTGGACTGGTAATCCT
99696847 GTTATTTGAT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
57 66 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.35
Consensus pattern (57 bp):
GGATTCAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAAA
Found at i:99699290 original size:13 final size:13
Alignment explanation
Indices: 99699272--99699296 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99699262 ATATCTTCTG
99699272 GGTATTTTATATA
1 GGTATTTTATATA
99699285 GGTATTTTATAT
1 GGTATTTTATAT
99699297 GTACTGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (13 bp):
GGTATTTTATATA
Found at i:99706551 original size:18 final size:18
Alignment explanation
Indices: 99706514--99706553 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
99706504 GTTTGTTTCG
* **
99706514 ATATATTATTATAAGGTT
1 ATATATTATGATAAACTT
99706532 ATATATTATGATAAACTT
1 ATATATTATGATAAACTT
99706550 ATAT
1 ATAT
99706554 GTATGTGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (18 bp):
ATATATTATGATAAACTT
Found at i:99709428 original size:589 final size:589
Alignment explanation
Indices: 99708312--99709493 Score: 2193
Period size: 589 Copynumber: 2.0 Consensus size: 589
99708302 ATTTATGGAT
99708312 AAGTCACAATCATCTATTTCAAAGAAATCAAAGAAGTACCATGATCGTTCTACCACCTTTACGGG
1 AAGTCACAATCATCTATTTCAAAGAAATCAAAGAAGTACCATGATCGTTCTACCACCTTTACGGG
*
99708377 ATATTTTGGGAAAAAGTGAGGCTCTCAACGTTCTAACCCGAGATCTTCGTCTCCATTTGTAACAA
66 ATATTTTGGGAAAAAGCGAGGCTCTCAACGTTCTAACCCGAGATCTTCGTCTCCATTTGTAACAA
* * *
99708442 GTGTGGGAAGTGTCGGTAACCCCAAATTAAGGTGTAAACACTGTAATAAATTTTATTTTGGGGAA
131 GTATGGGAAGTGTCGGTAACCCCAAATTAAGGTGTAAACACTATAATAAATTTTATTTTAGGGAA
*
99708507 TGCTGTTTGAGAACTGGAGCATGTTATAAATGTGGTTCTCTTGATCGTTTTCTTAAAGATTGTTC
196 TGCTATTTGAGAACTGGAGCATGTTATAAATGTGGTTCTCTTGATCGTTTTCTTAAAGATTGTTC
99708572 GGAAAGGATTGAAAAAGATACTGATCAGACTTTAAAGCCAAGCAACCCTAATGCGAGAGGTAGAC
261 GGAAAGGATTGAAAAAGATACTGATCAGACTTTAAAGCCAAGCAACCCTAATGCGAGAGGTAGAC
* *
99708637 CTCCTTGATATCCTGGAAATGTCAGTGGTAGTTGAAGTGCTACAAAAGATTCAACAGTTAAATCT
326 CTCCTCGATATCCTGGAAATGTCAGTGGTAGTCGAAGTGCTACAAAAGATTCAACAGTTAAATCT
* * *
99708702 GAGGCACGAACACCGGCTAGGACATATACTATACGTGCAAGAGAGGATGCCTCTGCACCAGACGT
391 AAGGCACGAACACCGGCTAGGACATATACTATACGTGCAAGAGAGGATGCCTCTACACCAGACAT
* *
99708767 CATTACTAGTATATTTTCTCTACTTGATACTGATATTACTGCTTTGATTGATCCTGATTCAACGC
456 CATTACTAGTACATTTTCTCTACTTGATACTAATATTACTGCTTTGATTGATCCTGATTCAACGC
* *
99708832 ATTCATACATATGCATGAACTTAGTGTCTGTTAAAAATTTACCTGTTGAATTCACTGAATTTGTG
521 ATTCATACATATGCATGAACTTAGTGTCTGTTAAAAAATTACCTGTTGAATTCACTAAATTTGTG
99708897 GTTA
586 GTTA
99708901 AAGTCACAATCATCTATTTCAAAGAAATCAAAGAAGTACCATGATCGTTCTACCACCTTTACGGG
1 AAGTCACAATCATCTATTTCAAAGAAATCAAAGAAGTACCATGATCGTTCTACCACCTTTACGGG
* *
99708966 ATATTTTGGGAAAAAGCGAGGCTCTCAACGTTCTAACCCGGGATCTTGGTCTCCATTTGTAACAA
66 ATATTTTGGGAAAAAGCGAGGCTCTCAACGTTCTAACCCGAGATCTTCGTCTCCATTTGTAACAA
*
99709031 GTATGGGAAGTGTCGGTAACCCCAAATTGAGGTGTAAACACTATAATAAATTTTATTTTAGGGAA
131 GTATGGGAAGTGTCGGTAACCCCAAATTAAGGTGTAAACACTATAATAAATTTTATTTTAGGGAA
99709096 TGCTATTTGAGAACTGGAGCATGTTATAAATGTGGTTCTCTTGATCGTTTTCTTAAAGATTGTTC
196 TGCTATTTGAGAACTGGAGCATGTTATAAATGTGGTTCTCTTGATCGTTTTCTTAAAGATTGTTC
*
99709161 GGAAAGGATTGAAAAAGATACTGATCAGACTTTAAAGCCAAGCAACCCTAGTGCGAGAGGTAGAC
261 GGAAAGGATTGAAAAAGATACTGATCAGACTTTAAAGCCAAGCAACCCTAATGCGAGAGGTAGAC
99709226 CTCCTCGATATCCTGGAAATGTCAGTGGTAGTCGAAGTGCTACAAAAGATTCAACAGTTAAATCT
326 CTCCTCGATATCCTGGAAATGTCAGTGGTAGTCGAAGTGCTACAAAAGATTCAACAGTTAAATCT
99709291 AAGGCACGAACACCGGCTAGGACATATACTATACGTGCAAGAGAGGATGCCTCTACACCAGACAT
391 AAGGCACGAACACCGGCTAGGACATATACTATACGTGCAAGAGAGGATGCCTCTACACCAGACAT
*
99709356 CATTACTGGTACATTTTCTCTACTTGATACTAATATTACTGCTTTGATTGATCCTGATTCAACGC
456 CATTACTAGTACATTTTCTCTACTTGATACTAATATTACTGCTTTGATTGATCCTGATTCAACGC
99709421 ATTCATACATATGCATGAACTTAGTGTCTGTTAAAAAATTACCTGTTGAATTCACTAAATTTGTG
521 ATTCATACATATGCATGAACTTAGTGTCTGTTAAAAAATTACCTGTTGAATTCACTAAATTTGTG
99709486 GTTA
586 GTTA
99709490 AAGT
1 AAGT
99709494 TTCAAATCCC
Statistics
Matches: 574, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
589 574 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (589 bp):
AAGTCACAATCATCTATTTCAAAGAAATCAAAGAAGTACCATGATCGTTCTACCACCTTTACGGG
ATATTTTGGGAAAAAGCGAGGCTCTCAACGTTCTAACCCGAGATCTTCGTCTCCATTTGTAACAA
GTATGGGAAGTGTCGGTAACCCCAAATTAAGGTGTAAACACTATAATAAATTTTATTTTAGGGAA
TGCTATTTGAGAACTGGAGCATGTTATAAATGTGGTTCTCTTGATCGTTTTCTTAAAGATTGTTC
GGAAAGGATTGAAAAAGATACTGATCAGACTTTAAAGCCAAGCAACCCTAATGCGAGAGGTAGAC
CTCCTCGATATCCTGGAAATGTCAGTGGTAGTCGAAGTGCTACAAAAGATTCAACAGTTAAATCT
AAGGCACGAACACCGGCTAGGACATATACTATACGTGCAAGAGAGGATGCCTCTACACCAGACAT
CATTACTAGTACATTTTCTCTACTTGATACTAATATTACTGCTTTGATTGATCCTGATTCAACGC
ATTCATACATATGCATGAACTTAGTGTCTGTTAAAAAATTACCTGTTGAATTCACTAAATTTGTG
GTTA
Found at i:99714434 original size:15 final size:15
Alignment explanation
Indices: 99714414--99714443 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99714404 AAAATTAAAT
99714414 ATGGTTATAACATAC
1 ATGGTTATAACATAC
99714429 ATGGTTATAACATAC
1 ATGGTTATAACATAC
99714444 TTATAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
ATGGTTATAACATAC
Found at i:99716962 original size:34 final size:35
Alignment explanation
Indices: 99716895--99716967 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
99716885 TTATTGATTA
99716895 AGTATAAATAATTAATAATAAATATGATCTAATTT
1 AGTATAAATAATTAATAATAAATATGATCTAATTT
* * *
99716930 AGTATAAA-AATTTATAATATATACT-ATGTAATTT
1 AGTATAAATAATTAATAATAAATA-TGATCTAATTT
99716964 AGTA
1 AGTA
99716968 GGTTAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 25 0.74
35 9 0.26
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (35 bp):
AGTATAAATAATTAATAATAAATATGATCTAATTT
Found at i:99717134 original size:29 final size:27
Alignment explanation
Indices: 99717101--99717199 Score: 90
Period size: 30 Copynumber: 3.4 Consensus size: 27
99717091 TTTATATTTT
99717101 AAATAAAAAACATAAAAATTTATTTTTAA
1 AAATAAAAAA-ATAAAAA-TTATTTTTAA
* * *
99717130 AAATAAAAATTATGAAAAATAACTCTTTAA
1 AAATAAAAA-AAT-AAAAATTA-TTTTTAA
* * *
99717160 AATTTAAAAAATAAAAACTATTTTTAA
1 AAATAAAAAAATAAAAATTATTTTTAA
99717187 AATATAAAAAAAT
1 AA-ATAAAAAAAT
99717200 TTCTAAAATT
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
27 8 0.15
28 14 0.25
29 15 0.27
30 18 0.33
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (27 bp):
AAATAAAAAAATAAAAATTATTTTTAA
Found at i:99717201 original size:19 final size:20
Alignment explanation
Indices: 99717162--99717208 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
99717152 CTCTTTAAAA
* *
99717162 TTTAAAAAATAAAAACTATT
1 TTTAAAATATAAAAACAATT
99717182 TTTAAAATATAAAAA-AATT
1 TTTAAAATATAAAAACAATT
*
99717201 TCTAAAAT
1 TTTAAAAT
99717209 TTGATGTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTAAAATATAAAAACAATT
Found at i:99717771 original size:21 final size:21
Alignment explanation
Indices: 99717745--99717787 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
99717735 AACAGTGGTG
*
99717745 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
99717766 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
99717787 G
1 G
99717788 AGTGATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.35, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:99717797 original size:20 final size:21
Alignment explanation
Indices: 99717748--99717799 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
99717738 AGTGGTGGCG
* *
99717748 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGATACTGTAGCA
99717769 GTGAGATTAGATACTGTAG-A
1 GTGAGATTAGATACTGTAGCA
*
99717789 GTGATATTAGA
1 GTGAGATTAGA
99717800 AACAATGGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.31, C:0.06, G:0.31, T:0.33
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:99724190 original size:179 final size:179
Alignment explanation
Indices: 99723968--99724330 Score: 672
Period size: 179 Copynumber: 2.0 Consensus size: 179
99723958 TCAAAGAGGG
*
99723968 AAAAACCATAGGTAAAGGAGGCTTCGGCTTTTAACTAAATGAGCAAACAAATGAGAGTAAAATAA
1 AAAAACCATAGGTAAAGGAGGCTTCAGCTTTTAACTAAATGAGCAAACAAATGAGAGTAAAATAA
99724033 GGAGAAAATTAACATAAATGTACTAAATGTACATTACCCAAAACCTCGAATACGAAGCTCAAAAT
66 GGAGAAAATTAACATAAATGTACTAAATGTACATTACCCAAAACCTCGAATACGAAGCTCAAAAT
* * *
99724098 CCCAAAGAGAAAACTAGTAAACAAAACTCTAAATCTCATAGGCATTCAC
131 CCCAAACAGAAAACTAGTAAACAAAACCCTAAATCTCATAGGAATTCAC
*
99724147 AAAAACCATAGGTAAAGGAGGCTTCAGCTTTTAACTAAATGAGCAAACAAATGAGAGTAAAATAT
1 AAAAACCATAGGTAAAGGAGGCTTCAGCTTTTAACTAAATGAGCAAACAAATGAGAGTAAAATAA
99724212 GGAGAAAATTAACATAAATGTACTAAATGTACATTACCCAAAACCTCGAATACGAAGCTCAAAAT
66 GGAGAAAATTAACATAAATGTACTAAATGTACATTACCCAAAACCTCGAATACGAAGCTCAAAAT
*
99724277 CCCAAACAGAAAACTTGTAAACAAAACCCTAAATCTCATAGGAATTCAC
131 CCCAAACAGAAAACTAGTAAACAAAACCCTAAATCTCATAGGAATTCAC
99724326 AAAAA
1 AAAAA
99724331 GGGTATAAAA
Statistics
Matches: 178, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
179 178 1.00
ACGTcount: A:0.48, C:0.18, G:0.14, T:0.20
Consensus pattern (179 bp):
AAAAACCATAGGTAAAGGAGGCTTCAGCTTTTAACTAAATGAGCAAACAAATGAGAGTAAAATAA
GGAGAAAATTAACATAAATGTACTAAATGTACATTACCCAAAACCTCGAATACGAAGCTCAAAAT
CCCAAACAGAAAACTAGTAAACAAAACCCTAAATCTCATAGGAATTCAC
Found at i:99726238 original size:40 final size:40
Alignment explanation
Indices: 99726066--99726231 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
99726056 AACCCAAGTA
* **
99726066 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
99726105 CCTTCAGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99726145 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* **
99726185 CCTTCGGGACTTAGCCCGGATATAGTCACTATCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99726225 CCTTCGG
1 CCTTCGG
99726232 ATCTTAGTCT
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.10
40 104 0.90
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:99731203 original size:40 final size:40
Alignment explanation
Indices: 99731031--99731196 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
99731021 AACCCAAGTA
* **
99731031 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99731070 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99731110 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
99731150 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99731190 CCTTCGG
1 CCTTCGG
99731197 ATCTTAGTCT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 13 0.11
40 108 0.89
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:99732435 original size:2 final size:2
Alignment explanation
Indices: 99732428--99732454 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
99732418 CTAATATTTC
99732428 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
99732455 GTATGTAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99734111 original size:29 final size:29
Alignment explanation
Indices: 99734078--99734234 Score: 251
Period size: 29 Copynumber: 5.4 Consensus size: 29
99734068 TTGTGTGTAC
*
99734078 AATGTGAAAAGGGATAGCTTCGGCTATCA
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
99734107 AATGTGAAAAGGGATAGCTTCGGCTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
*
99734136 AATGTGAAAAGGGATAGCTTCAGCTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
* * *
99734165 AATATAAAAAGGGATAGCTTCGGCTATTG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
* *
99734194 AATGTGAAAAGGGATACCTTCAGCTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
99734223 AATGTGAAAAGG
1 AATGTGAAAAGG
99734235 AAAGGTATAC
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 117 1.00
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
AATGTGAAAAGGGATAGCTTCGGCTATCG
Found at i:99734334 original size:32 final size:33
Alignment explanation
Indices: 99734227--99734461 Score: 260
Period size: 33 Copynumber: 7.2 Consensus size: 33
99734217 CTATCGAATG
**
99734227 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
* ** * *
99734260 AGAAAAGGAAAGGTATACTTTGTCTATACCATT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
* * * *
99734293 TGCAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
*
99734325 TGGAAAGGTTAGGTATACTTTGTGTATACCACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
* ** *
99734358 AGAAAAGGAAAGGTATACTTTG-GTATACCATT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
* * *
99734390 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
* *
99734422 TGGAAAGGTTAGGTATACTTTGTGTATACCATT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACT
99734455 TGAAAAG
1 TGAAAAG
99734462 AAAATGTATA
Statistics
Matches: 165, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
32 80 0.48
33 85 0.52
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (33 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACCACT
Found at i:99734365 original size:65 final size:66
Alignment explanation
Indices: 99734227--99734461 Score: 260
Period size: 65 Copynumber: 3.6 Consensus size: 66
99734217 CTATCGAATG
** * ** * *
99734227 TGAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTCTATACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACTTGAAAAGGTTAGGTATACTTTGTGTATACCAC
99734292 T
66 T
* * * * *
99734293 TGCAAAGGTTATGTACACTTTGTGTGTA-CACTTGGAAAGGTTAGGTATACTTTGTGTATACCAC
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACTTGAAAAGGTTAGGTATACTTTGTGTATACCAC
99734357 T
66 T
* ** * * * *
99734358 AGAAAAGGAAAGGTATACTTTG-GTATACCATTTGAAAAGGTTATGTACACTTTGTGTGTA-CAC
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACTTGAAAAGGTTAGGTATACTTTGTGTATACCAC
99734421 T
66 T
* *
99734422 TGGAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAG
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACTTGAAAAG
99734462 AAAATGTATA
Statistics
Matches: 139, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
64 26 0.19
65 91 0.65
66 22 0.16
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (66 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACCACTTGAAAAGGTTAGGTATACTTTGTGTATACCAC
T
Found at i:99734430 original size:97 final size:98
Alignment explanation
Indices: 99734237--99734485 Score: 419
Period size: 97 Copynumber: 2.6 Consensus size: 98
99734227 TGAAAAGGAA
** *
99734237 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTCTATACCATTTGCAAAGGT
1 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGAGTATACCATTTGAAAAGGT
99734302 TATGTACACTTTGTGTGTACACTTGGAAAGGTT
66 TATGTACACTTTGTGTGTACACTTGGAAAGGTT
99734335 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTG-GTATACCATTTGAAAAGGT
1 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGAGTATACCATTTGAAAAGGT
99734399 TATGTACACTTTGTGTGTACACTTGGAAAGGTT
66 TATGTACACTTTGTGTGTACACTTGGAAAGGTT
* * * * *
99734432 AGGTATACTTTGTGTATACCATTTGAAAAGAAAATGTATACTTTGAGTGTACCA
1 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGAGTATACCA
99734486 CTCAGAAAGA
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
97 91 0.64
98 52 0.36
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (98 bp):
AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGAGTATACCATTTGAAAAGGT
TATGTACACTTTGTGTGTACACTTGGAAAGGTT
Found at i:99734514 original size:97 final size:97
Alignment explanation
Indices: 99734237--99734524 Score: 303
Period size: 97 Copynumber: 3.0 Consensus size: 97
99734227 TGAAAAGGAA
* * ** * *
99734237 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTCTATACCATTTGCAAAGGT
1 AGGTATACTTTGTGTATACCACTAGAAAAGAAAAGGTATACTTTG-GTATACCATCAGAAAAGGA
* * * * *
99734302 TATGTACACTTTGTGTGTACACTTGGAAAGGTT
65 AACGTACACCTCGAGTGTACACTTGGAAAGGTT
* ** **
99734335 AGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGGTATACCATTTGAAAAGGTT
1 AGGTATACTTTGTGTATACCACTAGAAAAGAAAAGGTATACTTTGGTATACCATCAGAAAAGGAA
* * * *
99734400 ATGTACACTTTGTGTGTACACTTGGAAAGGTT
66 ACGTACACCTCGAGTGTACACTTGGAAAGGTT
* * * *
99734432 AGGTATACTTTGTGTATACCATTTGAAAAGAAAATGTATACTTTGAGTGTACCACTCAG-AAA-G
1 AGGTATACTTTGTGTATACCACTAGAAAAGAAAAGGTATACTTTG-GTATACCA-TCAGAAAAGG
99734495 AAACGTACACCTCGAGTGTACAAC-TGGAAA
64 AAACGTACACCTCGAGTGTAC-ACTTGGAAA
99734525 AGGAAACGTC
Statistics
Matches: 172, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
97 113 0.66
98 57 0.33
99 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (97 bp):
AGGTATACTTTGTGTATACCACTAGAAAAGAAAAGGTATACTTTGGTATACCATCAGAAAAGGAA
ACGTACACCTCGAGTGTACACTTGGAAAGGTT
Found at i:99736296 original size:10 final size:10
Alignment explanation
Indices: 99736281--99736311 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
99736271 GAACCACCCT
99736281 GATTTTCAAA
1 GATTTTCAAA
99736291 GATTTTCAAA
1 GATTTTCAAA
*
99736301 GATTTTTAAA
1 GATTTTCAAA
99736311 G
1 G
99736312 CAAGAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (10 bp):
GATTTTCAAA
Found at i:99743041 original size:2 final size:2
Alignment explanation
Indices: 99743034--99743058 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
99743024 CTAATATTTC
99743034 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
99743059 GTACGTAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99744686 original size:29 final size:29
Alignment explanation
Indices: 99744653--99744867 Score: 322
Period size: 29 Copynumber: 7.4 Consensus size: 29
99744643 CTGTGTGTAC
* *
99744653 AATGTGAAAAGGGATAGCTTCGCCTATCA
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
99744682 AATGTGAAAAGGGATAGCTTCGGCTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
*
99744711 AATGTGAAAAGGGATAGCTTCAGCTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
* * *
99744740 AATATAAAAAGGGATAGCTTCGGCTATTG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
* *
99744769 AATGTGAAAAGGGATACCTTCAGCTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
*
99744798 AATGTGAAAAGGGATAGCTTCGGTTATCG
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
* * *
99744827 AATGTGAAAAGGGATAGTTTCGGTTATCA
1 AATGTGAAAAGGGATAGCTTCGGCTATCG
99744856 AATGTGAAAAGG
1 AATGTGAAAAGG
99744868 AAAGGTATAC
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 169 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (29 bp):
AATGTGAAAAGGGATAGCTTCGGCTATCG
Found at i:99744898 original size:33 final size:33
Alignment explanation
Indices: 99744861--99745029 Score: 187
Period size: 33 Copynumber: 5.1 Consensus size: 33
99744851 TATCAAATGT
*
99744861 GAAAAGGAAAGGTATACTTTGTGCATACCACTA
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTA
* * *
99744894 GAAAAGAAAAGGTATACTTTGTGTATACCATTT
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTA
* ** * * * *
99744927 CAAAAGGTTATGTACACTTTGTGTGTA-CACTT
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTA
* **
99744959 GGAAAGGTTAGGTATACTTTGTGTATACCACTA
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTA
*
99744992 GAAAAGGAAAGGTATACTTTGTGTGTACCACTCA
1 GAAAAGGAAAGGTATACTTTGTGTATACCACT-A
99745026 GAAA
1 GAAA
99745030 GAAACGTACA
Statistics
Matches: 112, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
32 26 0.23
33 81 0.72
34 5 0.04
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (33 bp):
GAAAAGGAAAGGTATACTTTGTGTATACCACTA
Found at i:99745063 original size:98 final size:99
Alignment explanation
Indices: 99744861--99745069 Score: 264
Period size: 98 Copynumber: 2.1 Consensus size: 99
99744851 TATCAAATGT
*
99744861 GAAAAGGAAAGGTATACTTTGTGCATACCACTAGAAAAGAAAAGGTATACTTTGTGTATACCATT
1 GAAAAGGAAAGGTATACTTTGTGCATACCACTAGAAAAGAAAAGGTATACTTTGTGTATACCATC
** * * * *
99744926 TCAAAAGGTTATGTACACTTTGTGTGTACACTTG
66 TCAAAAGGAAACGTACACCTCGAGTGTACACTTG
** * * *
99744960 G-AAAGGTTAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTGTACCA-C
1 GAAAAGGAAAGGTATACTTTGTGCATACCACTAGAAAAGAAAAGGTATACTTTGTGTATACCATC
99745023 TCAGAAA-GAAACGTACACCTCGAGTGTACAAC-TG
66 TCA-AAAGGAAACGTACACCTCGAGTGTAC-ACTTG
99745057 GAAAAGGAAAGGT
1 GAAAAGGAAAGGT
99745070 CCATCAAAAA
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
97 22 0.24
98 70 0.75
99 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (99 bp):
GAAAAGGAAAGGTATACTTTGTGCATACCACTAGAAAAGAAAAGGTATACTTTGTGTATACCATC
TCAAAAGGAAACGTACACCTCGAGTGTACACTTG
Found at i:99750572 original size:20 final size:20
Alignment explanation
Indices: 99750534--99750581 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
99750524 TAAATTCTAA
* **
99750534 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
99750554 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
99750574 AAA-ATAAA
1 AAAGATAAA
99750582 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:99751657 original size:40 final size:41
Alignment explanation
Indices: 99751610--99751686 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 41
99751600 TAAATTTAAT
*
99751610 TTTTTATTATATATTTGTA-CAAAAAATAATTTTAAAAATA
1 TTTTTATTATATATTTGTACCAAAAAATAATTATAAAAATA
* *
99751650 TTTTTATTATTTATTTGTACCAAAATATAATTATAAA
1 TTTTTATTATATATTTGTACCAAAAAATAATTATAAA
99751687 TTTAATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 18 0.55
41 15 0.45
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (41 bp):
TTTTTATTATATATTTGTACCAAAAAATAATTATAAAAATA
Found at i:99751705 original size:40 final size:39
Alignment explanation
Indices: 99751589--99751697 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 39
99751579 AGTTAATCTT
99751589 AAAATAT-ATTTTAAATTTAATTTTTTATTATATATTTGTAC
1 AAAATATAATTTTAAATTTAATTTTTTA--AT-TATTTGTAC
* ** * *
99751630 AAAAAATAATTTTAAAAATATTTTTATTATTTATTTGTACC
1 AAAATATAATTTTAAATTTAATTTT-TTAATTATTTGTA-C
*
99751671 AAAATATAATTATAAATTTAATTTTTT
1 AAAATATAATTTTAAATTTAATTTTTT
99751698 GCTTATTTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
40 10 0.18
41 28 0.51
42 14 0.25
43 3 0.05
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (39 bp):
AAAATATAATTTTAAATTTAATTTTTTAATTATTTGTAC
Found at i:99751971 original size:3 final size:3
Alignment explanation
Indices: 99751963--99751991 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
99751953 AATGTTTTTA
99751963 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
99751992 ATCAAAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:99758489 original size:19 final size:20
Alignment explanation
Indices: 99758446--99758490 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
99758436 TTAATTCGCC
* *
99758446 GAATTTGAAAAAATTTGTTA
1 GAATTTTAAAAAATATGTTA
99758466 G-ATTTTAAAAAATAT-TTA
1 GAATTTTAAAAAATATGTTA
99758484 GAATTTT
1 GAATTTT
99758491 TAGCTGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 17 0.77
20 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (20 bp):
GAATTTTAAAAAATATGTTA
Found at i:99759407 original size:20 final size:19
Alignment explanation
Indices: 99759370--99759409 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
99759360 AAACTGAATA
* *
99759370 TTTATAATAAATATTTTAT
1 TTTATAATAAAAAATTTAT
99759389 TTTATAAATAAAAAATTTAT
1 TTTAT-AATAAAAAATTTAT
99759409 T
1 T
99759410 AATTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTATAATAAAAAATTTAT
Found at i:99767532 original size:50 final size:50
Alignment explanation
Indices: 99767457--99767719 Score: 262
Period size: 50 Copynumber: 5.3 Consensus size: 50
99767447 ACTCATTTGA
* *
99767457 CCAAATATACAAGATCAGATATAATATCACATGTGTGCTTACCTATATGG
1 CCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGG
* * *
99767507 CCAAATATGCAAGAACAAATTTAATATCACATATGTGCTTACCTATATGG
1 CCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGG
* * * * * *
99767557 CCGAATATGCAAGATCAAATTTAACATCACATATGTACTTACTTATATGG
1 CCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGG
* * *
99767607 CCGAATATACAA-ATTCAAATATAATATCACATTTGTGC--ACACTTTCATGG
1 CCAAATATACAAGA-TCAAATATAATATCACATATGTGCTTAC-CTAT-ATGG
* * * * * * * * *
99767657 TCGAATATTCAAGATCCAATACAACATCACATATGTACATACCTATGTGG
1 CCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGG
*
99767707 CCGAATATACAAG
1 CCAAATATACAAG
99767720 GTCATTTAGG
Statistics
Matches: 179, Mismatches: 28, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
48 2 0.01
49 3 0.02
50 168 0.94
51 4 0.02
52 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (50 bp):
CCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGG
Found at i:99767633 original size:100 final size:100
Alignment explanation
Indices: 99767460--99767719 Score: 301
Period size: 100 Copynumber: 2.6 Consensus size: 100
99767450 CATTTGACCA
* * * * * *
99767460 AATATACAAGATCAGATATAATATCACATGTGTGCTTACCTATATGGCCAAATATGCAAGAACAA
1 AATATACAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATACAAGAACAA
*
99767525 ATTTAATATCACATATGTGCTTAC-CTAT-ATGGCCG
66 ATATAATATCACATATGTGC--ACACTATCATGGCCG
* * * *
99767560 AATATGCAAGATCAAATTTAACATCACATATGTACTTACTTATATGGCCGAATATACAA-ATTCA
1 AATATACAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATACAAGA-ACA
* * *
99767624 AATATAATATCACATTTGTGCACACTTTCATGGTCG
65 AATATAATATCACATATGTGCACACTATCATGGCCG
* * * * *
99767660 AATATTCAAGATCCAATACAACATCACATATGTACATACCTATGTGGCCGAATATACAAG
1 AATATACAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATACAAG
99767720 GTCATTTAGG
Statistics
Matches: 135, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
98 2 0.01
99 4 0.03
100 129 0.96
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (100 bp):
AATATACAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATACAAGAACAA
ATATAATATCACATATGTGCACACTATCATGGCCG
Done.