Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 346 of 427
Found at i:100678463 original size:18 final size:18
Alignment explanation
Indices: 100678440--100678492 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
100678430 GACAAATCCT
100678440 AATCAAGGATTTACTCCC
1 AATCAAGGATTTACTCCC
*
100678458 AATCAAGGATTGACTCCC
1 AATCAAGGATTTACTCCC
*
100678476 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
100678493 TATATTAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:100680205 original size:17 final size:18
Alignment explanation
Indices: 100680171--100680206 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
100680161 ATCTTTCTTG
100680171 TTCTTTTAATAAAATATCC
1 TTCTTTTAAT-AAATATCC
100680190 TTCTTTTAAT-AATATCC
1 TTCTTTTAATAAATATCC
100680207 ATAATATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
19 10 0.59
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
TTCTTTTAATAAATATCC
Found at i:100682754 original size:15 final size:15
Alignment explanation
Indices: 100682730--100682759 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100682720 ATTCGACTCT
100682730 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
100682745 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
100682760 AGTGATTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:100686438 original size:36 final size:36
Alignment explanation
Indices: 100686387--100686456 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
100686377 GAGATTAGTC
* *
100686387 GATTTCTTGTGAGAAGATAGGAGATTGAGTTTGGCA
1 GATTACTTGTGAGAAGATAGGAGATTAAGTTTGGCA
* *
100686423 GATTACTTGTTAGAAGTTAGGAGATTAAGTTTGG
1 GATTACTTGTGAGAAGATAGGAGATTAAGTTTGG
100686457 ATTAAATGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.36
Consensus pattern (36 bp):
GATTACTTGTGAGAAGATAGGAGATTAAGTTTGGCA
Found at i:100713783 original size:50 final size:50
Alignment explanation
Indices: 100713703--100713879 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
100713693 CCATGGAAAC
100713703 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * * *
100713753 AAGTGATAAGTAATAACTTCGGCTATACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
100713803 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * *
100713853 CAAGTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
100713880 CTGATCAGTG
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 87 0.78
51 25 0.22
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:100714034 original size:31 final size:31
Alignment explanation
Indices: 100713855--100714034 Score: 261
Period size: 31 Copynumber: 5.8 Consensus size: 31
100713845 GCAAATGACA
*
100713855 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
100713886 AGTGAAAAGTGGTAGCTTCTGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
100713917 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
100713948 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * ** *
100713979 AGTGAAAAATGATAGCACCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
100714010 AGTGAATAGTGGTAGCTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
100714035 AAGTGACAAG
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 133 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:100714045 original size:7 final size:7
Alignment explanation
Indices: 100714033--100714061 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
100714023 AGCTTTGGCT
100714033 ACAAGTG
1 ACAAGTG
100714040 ACAAGTG
1 ACAAGTG
100714047 ACAAGTG
1 ACAAGTG
100714054 ACAAGTG
1 ACAAGTG
100714061 A
1 A
100714062 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:100714134 original size:47 final size:48
Alignment explanation
Indices: 100714065--100714190 Score: 175
Period size: 47 Copynumber: 2.7 Consensus size: 48
100714055 CAAGTGATTT
* *
100714065 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* *
100714112 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATATGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
100714160 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
100714191 TTATGTAAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
47 67 0.96
48 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:100715413 original size:2 final size:2
Alignment explanation
Indices: 100715406--100715437 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
100715396 ATGTTAGATG
100715406 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100715438 AGAGCTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:100717127 original size:40 final size:40
Alignment explanation
Indices: 100717079--100717244 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
100717069 GGACTAAGAT
*
100717079 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
100717119 CCGAAGGCATTTGTGCGAGTTACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
100717159 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
100717199 CCGAAGGCATTTGTGCGAGTTG-TTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
100717238 CCGAAGG
1 CCGAAGG
100717245 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 15 0.13
40 102 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:100719236 original size:7 final size:8
Alignment explanation
Indices: 100719219--100719248 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
100719209 GGATAGTCTG
100719219 AAAAATAA
1 AAAAATAA
100719227 AAAAATAA
1 AAAAATAA
100719235 AAAAATAA
1 AAAAATAA
100719243 AAAAAT
1 AAAAAT
100719249 TCTTGATTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:100721660 original size:50 final size:50
Alignment explanation
Indices: 100721585--100721761 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
100721575 CCATGGAAAC
100721585 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * * *
100721635 AAGTGATAAGTAATAACTTCGGCTACACTTATATGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
100721685 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * *
100721735 CAAGTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
100721762 CTGATCAGTG
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 87 0.78
51 25 0.22
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:100721916 original size:31 final size:31
Alignment explanation
Indices: 100721737--100721916 Score: 270
Period size: 31 Copynumber: 5.8 Consensus size: 31
100721727 GCAAATGACA
*
100721737 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
100721768 AGTGAAAAGTGGTAGCTTCTGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
100721799 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
100721830 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * ** *
100721861 AGTGAAAAATGATAGCACCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
100721892 AGTGAATAGTGGTAGCTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
100721917 AAGTGACAAG
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 133 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:100721927 original size:7 final size:7
Alignment explanation
Indices: 100721915--100721943 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
100721905 AGCTTTGGCT
100721915 ACAAGTG
1 ACAAGTG
100721922 ACAAGTG
1 ACAAGTG
100721929 ACAAGTG
1 ACAAGTG
100721936 ACAAGTG
1 ACAAGTG
100721943 A
1 A
100721944 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:100722016 original size:47 final size:48
Alignment explanation
Indices: 100721947--100722072 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 48
100721937 CAAGTGATTT
* *
100721947 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
100721994 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
100722042 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
100722073 TTATGTAAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 66 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:100723198 original size:2 final size:2
Alignment explanation
Indices: 100723191--100723215 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
100723181 TGTAGCCACT
100723191 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
100723216 GTCAAAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:100727243 original size:7 final size:7
Alignment explanation
Indices: 100727224--100727254 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
100727214 TTTTTAATTA
100727224 AATAAATT
1 AATAAA-T
100727232 AATAAAT
1 AATAAAT
100727239 AATAAAT
1 AATAAAT
100727246 AATAAAT
1 AATAAAT
100727253 AA
1 AA
100727255 AAGAGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.74
8 6 0.26
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AATAAAT
Found at i:100730021 original size:18 final size:19
Alignment explanation
Indices: 100729979--100730022 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
100729969 ATGAAATATG
100729979 TATAAATATGCATAATAAAA
1 TATAAA-ATGCATAATAAAA
*
100729999 T-TAAAATGTATAA-AAAA
1 TATAAAATGCATAATAAAA
100730016 TATAAAA
1 TATAAAA
100730023 AACACTCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 12 0.55
19 4 0.18
20 1 0.05
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (19 bp):
TATAAAATGCATAATAAAA
Found at i:100730398 original size:31 final size:29
Alignment explanation
Indices: 100730363--100730425 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 29
100730353 CTTCTTTAAT
*
100730363 ATTTTAATGTTTTCTTAATTTTTTAAAAATA
1 ATTTTAATATTTTCTTAA-TTTTTAAAAA-A
* *
100730394 ATTTTTATATTTTTTTAATTTTTAAAAAA
1 ATTTTAATATTTTCTTAATTTTTAAAAAA
100730423 ATT
1 ATT
100730426 AAAAAAATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 4 0.14
30 10 0.34
31 15 0.52
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (29 bp):
ATTTTAATATTTTCTTAATTTTTAAAAAA
Found at i:100730418 original size:30 final size:32
Alignment explanation
Indices: 100730359--100730425 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 32
100730349 TATACTTCTT
100730359 TAATATTTTAATGTTTTCTTAATTTTTTAAAAA
1 TAAT-TTTTAATGTTTTCTTAATTTTTTAAAAA
100730392 TAATTTTTATAT-TTTT-TTAA-TTTTTAAAAA
1 TAATTTTTA-ATGTTTTCTTAATTTTTTAAAAA
100730422 -AATT
1 TAATT
100730426 AAAAAAATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
29 4 0.12
30 10 0.30
31 4 0.12
32 9 0.27
33 6 0.18
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (32 bp):
TAATTTTTAATGTTTTCTTAATTTTTTAAAAA
Found at i:100741255 original size:23 final size:22
Alignment explanation
Indices: 100741229--100741282 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
100741219 TTAATTTATG
*
100741229 TTATAATATATAC-ATATTATTA
1 TTATAATATA-ACTATAATATTA
* *
100741251 CTTATATTATAACTTTAATATTA
1 -TTATAATATAACTATAATATTA
100741274 TTATAATAT
1 TTATAATAT
100741283 TATTTCCACC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATAATATAACTATAATATTA
Found at i:100742384 original size:40 final size:40
Alignment explanation
Indices: 100742340--100742472 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
100742330 ACTCGATATC
* * *
100742340 TCACACACTAATTGCCGTAAATAGCCGAAGCTATCTC-AA
1 TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
* *
100742379 GTCACACACTAAGTGTCATATATAGCCGAAGCTATGTCGAA
1 -TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
* * * *
100742420 TCGCACACTAAGTGCCATATATAGCCGAAGCTATATTGTA
1 TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
*
100742460 TCGCACACTAAGT
1 TCACACACTAAGT
100742473 TCCACAAATA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 80 0.98
41 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
Found at i:100745141 original size:77 final size:77
Alignment explanation
Indices: 100744980--100745146 Score: 176
Period size: 77 Copynumber: 2.2 Consensus size: 77
100744970 CAAATTCATG
* * *
100744980 ACACTTTGGGAATTGGGACTATTTTATTCTGCCACCTCGGTTTGCCTGACAACAATGGCTTTTAA
1 ACACTCTGGGAATCGAGACTATTTTATTCTGCCACCTCGGTTTGCCTGACAACAATGGCTTTTAA
* *
100745045 TATCTGCCCACG
66 TATCTACCCACA
* ** * **
100745057 ACCCTCTGGGAATCGAGACTATTTTATTCTGTTACCTTGAG-TTG-CTCGACAATGATGGCTTTT
1 ACACTCTGGGAATCGAGACTATTTTATTCTGCCACCTCG-GTTTGCCT-GACAACAATGGCTTTT
* * *
100745120 AGTATCTATCTACA
64 AATATCTACCCACA
100745134 ACACTCTGGGAAT
1 ACACTCTGGGAAT
100745147 TGGGGCTGCG
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
76 2 0.03
77 70 0.96
78 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (77 bp):
ACACTCTGGGAATCGAGACTATTTTATTCTGCCACCTCGGTTTGCCTGACAACAATGGCTTTTAA
TATCTACCCACA
Found at i:100750538 original size:28 final size:28
Alignment explanation
Indices: 100750477--100750628 Score: 128
Period size: 28 Copynumber: 5.4 Consensus size: 28
100750467 GTTTTACAAA
* *
100750477 TTTACAATTTTGCTCC-TATTTTTTTAGAAT
1 TTTACAATTTT-CCCCTTA-TTTTTCAG-AT
*
100750507 TTTACAATTTTCCCCTTACTTTTCAGAT
1 TTTACAATTTTCCCCTTATTTTTCAGAT
* * * * *
100750535 TTTATAGTTTTGCACTTATTCTTCAGAT
1 TTTACAATTTTCCCCTTATTTTTCAGAT
* ** *
100750563 TTTACAATTTTTCCCACATTTTTTAGAT
1 TTTACAATTTTCCCCTTATTTTTCAGAT
* *
100750591 TTTACAATTATCCCC-TATTTTTTAGAT
1 TTTACAATTTTCCCCTTATTTTTCAGAT
*
100750618 TTTACAGTTTT
1 TTTACAATTTT
100750629 GTCCCATGCT
Statistics
Matches: 99, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
27 20 0.20
28 57 0.58
29 9 0.09
30 13 0.13
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (28 bp):
TTTACAATTTTCCCCTTATTTTTCAGAT
Found at i:100750954 original size:34 final size:34
Alignment explanation
Indices: 100750916--100750989 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
100750906 AAATACATGT
* *
100750916 TAAGCAAGTTTATTACTACTAT-TATAATTTGTTA
1 TAAGCAAGATAATTACTACTATATAT-ATTTGTTA
*
100750950 TAAGCATGATAATTACTACTATATATATTTGTTA
1 TAAGCAAGATAATTACTACTATATATATTTGTTA
100750984 TAAGCA
1 TAAGCA
100750990 TGTTATTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 33 0.92
35 3 0.08
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (34 bp):
TAAGCAAGATAATTACTACTATATATATTTGTTA
Found at i:100750990 original size:34 final size:34
Alignment explanation
Indices: 100750927--100750991 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
100750917 AAGCAAGTTT
100750927 ATTACTACTATTATAATTTGTTATAAGCATGATA
1 ATTACTACTATTATAATTTGTTATAAGCATGATA
100750961 ATTACTACTA-TATATATTTGTTATAAGCATG
1 ATTACTACTATTATA-ATTTGTTATAAGCATG
100750992 TTATTGATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 4 0.13
34 26 0.87
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.45
Consensus pattern (34 bp):
ATTACTACTATTATAATTTGTTATAAGCATGATA
Found at i:100752816 original size:22 final size:23
Alignment explanation
Indices: 100752768--100752818 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
100752758 ATTCAATTTA
100752768 TTTTA-TTATATTATATATAAAT
1 TTTTATTTATATTATATATAAAT
* * *
100752790 ATTTATTTAT-TTATATTTATAT
1 TTTTATTTATATTATATATAAAT
100752812 TTTTATT
1 TTTTATT
100752819 CGCTAACGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTATTTATATTATATATAAAT
Found at i:100761681 original size:17 final size:18
Alignment explanation
Indices: 100761649--100761694 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
100761639 TATATTCACC
100761649 TTTTATG-AAATATTAT-
1 TTTTATGAAAATATTATA
*
100761665 TTTTATGAAAATTTTATCA
1 TTTTATGAAAATATTAT-A
100761684 TTTTAT-AAAAT
1 TTTTATGAAAAT
100761695 CAATTTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 7 0.27
17 8 0.31
18 5 0.19
19 6 0.23
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
TTTTATGAAAATATTATA
Found at i:100762331 original size:3 final size:3
Alignment explanation
Indices: 100762312--100762385 Score: 62
Period size: 3 Copynumber: 25.0 Consensus size: 3
100762302 TTTGGGTTAG
* * * * *
100762312 AGA AAA AGA AAA AGA AGA AGA AG- AGG AGA AGG AGG AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* *
100762359 AGA ATA AGA AGA ATG- AGA AGG AGA AGA
1 AGA AGA AGA AGA A-GA AGA AGA AGA AGA
100762386 GGAAAAATGG
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.05
3 53 0.93
4 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:100762789 original size:36 final size:38
Alignment explanation
Indices: 100762749--100762834 Score: 122
Period size: 38 Copynumber: 2.3 Consensus size: 38
100762739 TTGTAATATT
**
100762749 GCTGCTGGTATATTGTTGGTT-ATGT-TGGTATACATG
1 GCTGCTGGTATATTGTTGGTTAACATATGGTATACATG
* *
100762785 GCTGCTGGTATATTGTTGTTTAACATATGTTATACATG
1 GCTGCTGGTATATTGTTGGTTAACATATGGTATACATG
100762823 GCTGCTGGTATA
1 GCTGCTGGTATA
100762835 CATGGCTAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 20 0.45
37 2 0.05
38 22 0.50
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (38 bp):
GCTGCTGGTATATTGTTGGTTAACATATGGTATACATG
Found at i:100763068 original size:23 final size:24
Alignment explanation
Indices: 100763021--100763068 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
100763011 AGATGAAAAA
*
100763021 ACACATATGTATTTCTCAATTCTC
1 ACACATATGTATTTCTCAATACTC
* *
100763045 ACACATTTGT-TTTTTCAATACTC
1 ACACATATGTATTTCTCAATACTC
100763068 A
1 A
100763069 TATTGTAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (24 bp):
ACACATATGTATTTCTCAATACTC
Found at i:100769064 original size:2 final size:2
Alignment explanation
Indices: 100769057--100769093 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
100769047 ACATACATGG
100769057 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
100769094 AAACTTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:100769946 original size:22 final size:22
Alignment explanation
Indices: 100769919--100769995 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
100769909 CTTACACATA
100769919 TATCACATTAACCATTCGGCCT
1 TATCACATTAACCATTCGGCCT
** ** *
100769941 TATCACATGTATGCACTTCCACAT
1 TATCACAT-TAACCA-TTCGGCCT
**
100769965 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAACCATTCGGCCT
100769988 TATCACAT
1 TATCACAT
100769996 ATACACACTT
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
22 15 0.37
23 10 0.24
24 9 0.22
25 7 0.17
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.32
Consensus pattern (22 bp):
TATCACATTAACCATTCGGCCT
Found at i:100770024 original size:47 final size:47
Alignment explanation
Indices: 100769875--100770030 Score: 165
Period size: 47 Copynumber: 3.3 Consensus size: 47
100769865 TGCACACTTT
* * * * *
100769875 TCACAATTGGTCATTCCGCCTTGTCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTCCACAT-TCA
** * **
100769921 TCACATTAACCATTCGGCCTTATCACATGTATGCACTTCCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTCCACATTCA
*
100769968 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTCCACATTCA
*
100770015 TCACGTTGGCCATTCG
1 TCACATTGGCCATTCG
100770031 ATCTTAAGCC
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
45 20 0.22
46 5 0.05
47 67 0.73
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTCCACATTCA
Found at i:100773266 original size:21 final size:21
Alignment explanation
Indices: 100773212--100773267 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
100773202 GTTAGGGCAG
*
100773212 CTTGTTGAGTTAGGGTACTCT
1 CTTGTTGAGTTGGGGTACTCT
* * * *
100773233 CTTGCTGATTTGGGGTAGTTT
1 CTTGTTGAGTTGGGGTACTCT
*
100773254 GTTGTTGAGTTGGG
1 CTTGTTGAGTTGGG
100773268 ACACCAACTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.11, C:0.09, G:0.36, T:0.45
Consensus pattern (21 bp):
CTTGTTGAGTTGGGGTACTCT
Found at i:100773968 original size:25 final size:27
Alignment explanation
Indices: 100773913--100773971 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
100773903 CACACCCCCC
* *
100773913 TAAAAAACAATCACTATATACATATTA
1 TAAAAAATAATCACTACATACATATTA
* *
100773940 TAAAAAATACTCACTACATGCATATTA
1 TAAAAAATAATCACTACATACATATTA
100773967 -AAAAA
1 TAAAAA
100773972 TAGTCAACAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.27
Consensus pattern (27 bp):
TAAAAAATAATCACTACATACATATTA
Found at i:100774062 original size:22 final size:22
Alignment explanation
Indices: 100774037--100774083 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
100774027 CATGTGACCA
*
100774037 GCAACATAAAGTCAGAATAAAG
1 GCAACATAAAGTCAAAATAAAG
*
100774059 GCAACATGAAGTCAAAATAAAG
1 GCAACATAAAGTCAAAATAAAG
100774081 GCA
1 GCA
100774084 TTAGAAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.15, G:0.19, T:0.13
Consensus pattern (22 bp):
GCAACATAAAGTCAAAATAAAG
Found at i:100775866 original size:11 final size:11
Alignment explanation
Indices: 100775850--100775879 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
100775840 TAACATTAAG
100775850 AATATATATAT
1 AATATATATAT
*
100775861 AATATAAATAT
1 AATATATATAT
100775872 AATATATA
1 AATATATA
100775880 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:100776739 original size:17 final size:17
Alignment explanation
Indices: 100776719--100776754 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
100776709 TTTTTGGTAG
100776719 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
100776736 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
100776753 TT
1 TT
100776755 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:100776749 original size:12 final size:11
Alignment explanation
Indices: 100776719--100776752 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
100776709 TTTTTGGTAG
100776719 TTTTTCTTTTTC
1 TTTTT-TTTTTC
100776731 TTTTTTTTTTC
1 TTTTTTTTTTC
100776742 TTTGTTTTTTT
1 TTT-TTTTTTT
100776753 TTGGGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:100777507 original size:88 final size:83
Alignment explanation
Indices: 100777400--100777977 Score: 299
Period size: 88 Copynumber: 7.0 Consensus size: 83
100777390 AACAGACATT
** * *
100777400 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
100777465 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
100777488 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
100777552 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
100777571 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
100777632 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
100777654 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
100777719 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
100777742 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
100777807 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
100777825 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
100777885 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
100777902 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
100777963 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
100777978 CAGAAATTGA
Statistics
Matches: 384, Mismatches: 69, Indels: 84
0.72 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:100777604 original size:30 final size:30
Alignment explanation
Indices: 100777568--100777629 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
100777558 TTTTGAAAAA
100777568 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
100777598 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
100777628 CA
1 CA
100777630 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:100777748 original size:14 final size:14
Alignment explanation
Indices: 100777725--100777759 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
100777715 TGAGTTGATT
100777725 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
100777738 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
100777752 TTTGAAAA
1 TTTGAAAA
100777760 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:100778060 original size:72 final size:73
Alignment explanation
Indices: 100777777--100778307 Score: 411
Period size: 72 Copynumber: 6.8 Consensus size: 73
100777767 ACATGTAACC
* * * *
100777777 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
100777842 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
100777855 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
100777920 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
100777933 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
100777998 ACGTGTCT
66 GCGTGTCT
* ** * * *
100778006 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
100778070 GCGTGTCC
66 GCGTGTCT
*
100778078 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAATGCAGAAATTGAAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTTGAAA-ACAGAAATTG----
** ** *
100778143 ATGGAAATTGAAAATACCTCGACGTGTGAT
55 A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
100778173 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
100778238 CAGCGTGTC-
64 CAGCGTGTCT
* *
100778247 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
100778308 ACGGAAATTG
Statistics
Matches: 366, Mismatches: 56, Indels: 65
0.75 0.11 0.13
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 59 0.16
80 11 0.03
82 1 0.00
83 2 0.01
84 1 0.00
86 1 0.00
87 2 0.01
88 1 0.00
90 11 0.03
91 11 0.03
94 4 0.01
95 1 0.00
96 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:100778258 original size:170 final size:168
Alignment explanation
Indices: 100777974--100778450 Score: 725
Period size: 165 Copynumber: 2.9 Consensus size: 168
100777964 TGATTTTTTG
* * * ** * *
100777974 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
100778037 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
100778101 ATATGAGTTGATTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA-TTTTTTTTTTTGAAAGGCAAAAATTGA
*
100778140 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
100778205 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
100778270 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
100778305 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
100778370 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
100778435 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
100778451 GAAAAAGTAG
Statistics
Matches: 284, Mismatches: 19, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
165 157 0.55
166 27 0.10
167 1 0.00
168 30 0.11
170 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:100778269 original size:74 final size:75
Alignment explanation
Indices: 100778146--100778307 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
100778136 TTGAAAAATG
*
100778146 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
100778211 TTTTGACAACA
65 TTTTGACAACA
* * *
100778222 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
100778285 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
100778297 AAAATTGAAAA
1 GAAATTGAAAA
100778308 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:100778436 original size:74 final size:75
Alignment explanation
Indices: 100778311--100778450 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
100778301 TTGAAAAACG
* *
100778311 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
100778376 TTTTGACAACA
65 TTTTGACAACA
* * *
100778387 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
100778451 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:100778639 original size:212 final size:209
Alignment explanation
Indices: 100778250--100778852 Score: 663
Period size: 212 Copynumber: 2.9 Consensus size: 209
100778240 GCGTGTCCTG
* *
100778250 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAA--AAATTGAAAAACGGA
1 AGGCTTAACTCACCTCTCGCAATATGAGTTGA---TTTTG-AA--CAACTAAATTG-AAAACAGA
* * * *
100778313 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTT
59 AATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*** * *
100778378 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
121 AAAAC-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
100778443 TTGATTTTGAAAAAGTAGAAATTAAA
185 TTGATTTTGAAAAA-CAAAAATTAAA
100778469 AGG-TTCAAC-CTACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAAT
1 AGGCTT-AACTC-ACCTCTCGCAATATGAGTTGATT-TTGAACAAC-TAAATTGAAAACAGAAAT
**
100778532 TGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACA
62 TGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACA
* * *
100778597 CAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
127 CAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
100778662 TGAAAAACAAAAATTAAA
192 TGAAAAACAAAAATTAAA
* * *
100778680 AGGCTTAACTCACCTCTCGCAATATGA---G----T---CAA-T---TT-AAAACATAAACTAAA
1 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACTAAATTGAAAACAGAAATTGAA
* * *
100778730 AATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA-ACAAA
66 AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACACAAA
* * * *
100778793 AATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
131 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
100778853 AAAACACAAA
Statistics
Matches: 343, Mismatches: 33, Indels: 43
0.82 0.08 0.10
Matches are distributed among these distances:
192 58 0.17
193 39 0.11
194 26 0.08
195 2 0.01
198 1 0.00
200 3 0.01
203 1 0.00
208 1 0.00
211 31 0.09
212 71 0.21
213 4 0.01
214 40 0.12
216 28 0.08
217 9 0.03
218 2 0.01
219 27 0.08
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (209 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACTAAATTGAAAACAGAAATTGAA
AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACACAAA
AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA
AAACAAAAATTAAA
Found at i:100778649 original size:72 final size:71
Alignment explanation
Indices: 100778515--100778680 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
100778505 TGAACAACGT
* * * *
100778515 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
100778580 GAGTTG
66 GAGTTG
*
100778586 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
100778651 TGAGTTG
65 TGAGTTG
**
100778658 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
100778681 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:100778838 original size:71 final size:70
Alignment explanation
Indices: 100778680--100778942 Score: 345
Period size: 70 Copynumber: 3.8 Consensus size: 70
100778670 AAAAATTAAA
* * * * *
100778680 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
100778743 GCCCG
66 GCCCG
* *
100778748 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
**
100778813 GTCTTG
66 G-CCCG
* * *
100778819 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
100778882 TGCCCCG
65 TG-CCCG
*
100778889 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
100778943 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
68 26 0.16
69 10 0.06
70 82 0.49
71 32 0.19
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCG
Found at i:100778902 original size:262 final size:257
Alignment explanation
Indices: 100778518--100779109 Score: 1042
Period size: 262 Copynumber: 2.3 Consensus size: 257
100778508 ACAACGTAAA
* * * * * *
100778518 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
100778583 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
100778648 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
100778713 TTAAAACATAAACTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
100778777 TGATT
253 TGATT
100778782 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
100778847 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
100778912 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
100778977 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
100779039 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
100779104 TTGATT
66 TTGATT
100779110 TTCCTTGAAA
Statistics
Matches: 320, Mismatches: 7, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
256 22 0.07
257 109 0.34
262 127 0.40
264 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:100778916 original size:141 final size:140
Alignment explanation
Indices: 100778680--100778942 Score: 411
Period size: 141 Copynumber: 1.9 Consensus size: 140
100778670 AAAAATTAAA
* * *
100778680 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
100778745 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTCA
66 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA
100778809 ACGTGTCTTG
131 ACGTGTCTTG
* ** * *
100778819 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAA-ACAAAAACTAAAAATACCTCAGCGTG
100778884 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
65 -CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
100778943 GGCTTAACTC
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
139 33 0.30
140 23 0.21
141 39 0.35
142 16 0.14
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (140 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA
ACGTGTCTTG
Found at i:100787240 original size:10 final size:9
Alignment explanation
Indices: 100787224--100787260 Score: 51
Period size: 8 Copynumber: 4.2 Consensus size: 9
100787214 TTTTGTTAGG
100787224 TTTTTCTTT
1 TTTTTCTTT
100787233 TTTCTTCTTT
1 TTT-TTCTTT
100787243 TTTTT-TTT
1 TTTTTCTTT
100787251 TTTTT-TTT
1 TTTTTCTTT
100787259 TT
1 TT
100787261 GGGTTAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 13 0.48
9 5 0.19
10 9 0.33
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:100787293 original size:6 final size:6
Alignment explanation
Indices: 100787282--100787314 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
100787272 TTTTGGTAGG
100787282 TTTTTC TTTTTC TTTTT- TTTTTC TTTTT- TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
100787315 TTTGGGTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (6 bp):
TTTTTC
Found at i:100787302 original size:17 final size:16
Alignment explanation
Indices: 100787282--100787317 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
100787272 TTTTGGTAGG
100787282 TTTTTCTTTTTCTTTTT
1 TTTTTCTTTTT-TTTTT
100787299 TTTTTCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
100787315 TTT
1 TTT
100787318 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTT
Found at i:100787335 original size:58 final size:58
Alignment explanation
Indices: 100787211--100787332 Score: 212
Period size: 57 Copynumber: 2.1 Consensus size: 58
100787201 TTTTTTTATC
*
100787211 TTTTTTTGTTAGGTTTTTCTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTGGGTTAGG
1 TTTTTTTGGTAGGTTTTTCTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTGGGTTAGG
100787269 TTTTTTTGGTAGGTTTTTC-TTTTTCTT-TTTTTTTTCTTTTTTTTTTTTTGGGTTAGG
1 TTTTTTTGGTAGGTTTTTCTTTTTTCTTCTTTTTTTT-TTTTTTTTTTTTTGGGTTAGG
100787326 TTTTTTT
1 TTTTTTT
100787333 TGGGGGGCTT
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
56 8 0.13
57 36 0.58
58 18 0.29
ACGTcount: A:0.03, C:0.05, G:0.14, T:0.78
Consensus pattern (58 bp):
TTTTTTTGGTAGGTTTTTCTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTGGGTTAGG
Found at i:100787353 original size:56 final size:55
Alignment explanation
Indices: 100787240--100787353 Score: 122
Period size: 57 Copynumber: 2.0 Consensus size: 55
100787230 TTTTTTCTTC
*** ** ***
100787240 TTTTTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTTTGGTAGGTTTTTCTTTTTCTT
1 TTTTTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTTTGG-AGGGGCTTAATGGGCTT
100787296 TTTTTTTTCTTTTTTTTTTTTTGGGTTAGGTTTTTTTTGG-GGGGCTTAATGGGCTT
1 TTTTTTTT-TTTTTTTTTTTTTGGGTTAGG-TTTTTTTGGAGGGGCTTAATGGGCTT
100787352 TT
1 TT
100787354 GAATTGGGTT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
56 18 0.38
57 21 0.44
58 9 0.19
ACGTcount: A:0.04, C:0.04, G:0.20, T:0.71
Consensus pattern (55 bp):
TTTTTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTTTGGAGGGGCTTAATGGGCTT
Found at i:100788814 original size:46 final size:46
Alignment explanation
Indices: 100788761--100788936 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
100788751 TATTTGGGCA
100788761 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
100788807 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
100788854 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
100788900 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
100788937 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:100788916 original size:93 final size:93
Alignment explanation
Indices: 100788757--100788928 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
100788747 GGGATATTTG
* *
100788757 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
100788822 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
100788850 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
100788915 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
100788929 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:100791333 original size:15 final size:15
Alignment explanation
Indices: 100791321--100791350 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
100791311 TTTTCAGATG
100791321 CATCACTACCAGACA
1 CATCACTACCAGACA
100791336 CATCACTACCAGACA
1 CATCACTACCAGACA
100791351 TGTCTTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.40, G:0.07, T:0.13
Consensus pattern (15 bp):
CATCACTACCAGACA
Found at i:100791735 original size:89 final size:89
Alignment explanation
Indices: 100791627--100791806 Score: 306
Period size: 89 Copynumber: 2.0 Consensus size: 89
100791617 AGGTAAATAA
* * *
100791627 CAAATTTTGATTTTGCCACATACAATATAGCAGCTTGGATATAAACAATGGCAGATATACACAGC
1 CAAATTTTGATTTTGCCACATACAATATAGCAGCTTAGATACAAACAATGGCAGATATACACAAC
*
100791692 AAACATCAGTTTGATAATGACATT
66 AAACATCAATTTGATAATGACATT
100791716 CAAATTTTGATTTTGCCACATACAATATAGCAGCTTAGATACAAACAATGGCAGATATACACAAC
1 CAAATTTTGATTTTGCCACATACAATATAGCAGCTTAGATACAAACAATGGCAGATATACACAAC
* *
100791781 AAACATCAATTTGATATTGGCATT
66 AAACATCAATTTGATAATGACATT
100791805 CA
1 CA
100791807 TACAACGGCA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (89 bp):
CAAATTTTGATTTTGCCACATACAATATAGCAGCTTAGATACAAACAATGGCAGATATACACAAC
AAACATCAATTTGATAATGACATT
Found at i:100791930 original size:12 final size:12
Alignment explanation
Indices: 100791915--100791969 Score: 67
Period size: 12 Copynumber: 4.6 Consensus size: 12
100791905 AATGAGTGTT
*
100791915 TCAAAATTGAAA
1 TCAAAATCGAAA
100791927 TCAAAATCGAAA
1 TCAAAATCGAAA
100791939 T-AGAAATCGAAA
1 TCA-AAATCGAAA
**
100791951 TCAAAATTAAAA
1 TCAAAATCGAAA
100791963 TCAAAAT
1 TCAAAAT
100791970 AACAACATTG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 1 0.03
12 36 0.95
13 1 0.03
ACGTcount: A:0.60, C:0.11, G:0.07, T:0.22
Consensus pattern (12 bp):
TCAAAATCGAAA
Found at i:100791944 original size:18 final size:18
Alignment explanation
Indices: 100791915--100791969 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
100791905 AATGAGTGTT
*
100791915 TCAAAATTGAAATCAAAA
1 TCAAAATAGAAATCAAAA
* *
100791933 TCGAAATAGAAATCGAAA
1 TCAAAATAGAAATCAAAA
100791951 TCAAAATTA-AAATCAAAA
1 TCAAAA-TAGAAATCAAAA
100791969 T
1 T
100791970 AACAACATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 29 0.94
19 2 0.06
ACGTcount: A:0.60, C:0.11, G:0.07, T:0.22
Consensus pattern (18 bp):
TCAAAATAGAAATCAAAA
Found at i:100793208 original size:48 final size:48
Alignment explanation
Indices: 100793150--100793274 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
100793140 GCTCTTGGCC
* *
100793150 CCAGCGACCGCTCGGATTCCCATACTCTCTATCCCTTTGTTCTCGACT
1 CCAGCCACCGCTCGGATTCCCATAATCTCTATCCCTTTGTTCTCGACT
**
100793198 CCAGCCACCGCTCGGATTCCTGTAATCTCTATCCCTTTGTTCTCGACT
1 CCAGCCACCGCTCGGATTCCCATAATCTCTATCCCTTTGTTCTCGACT
* * * *
100793246 CCAGCCGCCACTTGGATTCCCATTATCTC
1 CCAGCCACCGCTCGGATTCCCATAATCTC
100793275 GACTCTTCCA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.15, C:0.39, G:0.14, T:0.31
Consensus pattern (48 bp):
CCAGCCACCGCTCGGATTCCCATAATCTCTATCCCTTTGTTCTCGACT
Found at i:100798091 original size:56 final size:56
Alignment explanation
Indices: 100798005--100798110 Score: 212
Period size: 56 Copynumber: 1.9 Consensus size: 56
100797995 TTCACGAAGT
100798005 TAAATTTTTTTATTTTCAAAATTTAATATGATAAATATATTATTGCATATAGTATG
1 TAAATTTTTTTATTTTCAAAATTTAATATGATAAATATATTATTGCATATAGTATG
100798061 TAAATTTTTTTATTTTCAAAATTTAATATGATAAATATATTATTGCATAT
1 TAAATTTTTTTATTTTCAAAATTTAATATGATAAATATATTATTGCATAT
100798111 GTAATAGTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.51
Consensus pattern (56 bp):
TAAATTTTTTTATTTTCAAAATTTAATATGATAAATATATTATTGCATATAGTATG
Found at i:100801588 original size:20 final size:20
Alignment explanation
Indices: 100801565--100801617 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 20
100801555 TTTAAAAACA
100801565 CTTTTTCTTTCAAAAAATAC
1 CTTTTTCTTTCAAAAAATAC
* * *
100801585 CTTTTACCTT-AAAAAATAT
1 CTTTTTCTTTCAAAAAATAC
* *
100801604 TTTTTTATTTCAAA
1 CTTTTTCTTTCAAA
100801618 CATACTCTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (20 bp):
CTTTTTCTTTCAAAAAATAC
Found at i:100801905 original size:2 final size:2
Alignment explanation
Indices: 100801898--100801936 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
100801888 CCTTTCTTTT
100801898 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100801937 TTAAGTTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:100806447 original size:42 final size:42
Alignment explanation
Indices: 100806383--100806466 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
100806373 AGAATATGAG
*
100806383 CCTAAAACCTAGTACTTGGAAAGGAAATAACCTAAACATATT
1 CCTAAAACCTAGTACTTAGAAAGGAAATAACCTAAACATATT
*
100806425 CCTAAAATCTAGTACTTAGAAAGGAAATAACCTAAACATATT
1 CCTAAAACCTAGTACTTAGAAAGGAAATAACCTAAACATATT
100806467 TTGAAATGGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25
Consensus pattern (42 bp):
CCTAAAACCTAGTACTTAGAAAGGAAATAACCTAAACATATT
Found at i:100810963 original size:62 final size:62
Alignment explanation
Indices: 100810891--100811015 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
100810881 AAATAAAAAC
* **
100810891 TAAATTAAGAAAGAAATTATTACAAAATTTTATTATTTATTCTTAGATCACATTTGTTGATA
1 TAAATTAAGAAAGAAATTATTACAAAAATTTATTACGTATTCTTAGATCACATTTGTTGATA
100810953 TAAATTAAGAAAGAAATTATTACAAAAATTTATTACGTATTCTTAGATCACATTTGTTGATA
1 TAAATTAAGAAAGAAATTATTACAAAAATTTATTACGTATTCTTAGATCACATTTGTTGATA
100811015 T
1 T
100811016 TTATAGTAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (62 bp):
TAAATTAAGAAAGAAATTATTACAAAAATTTATTACGTATTCTTAGATCACATTTGTTGATA
Found at i:100814318 original size:24 final size:23
Alignment explanation
Indices: 100814287--100814332 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
100814277 TTAAAAATAT
*
100814287 TAAAATTAAAAATTTTATTTTTA
1 TAAAATTAAAAATTTTAATTTTA
*
100814310 TAAATATTAAAACTTTTAATTTT
1 TAAA-ATTAAAAATTTTAATTTT
100814333 CTTTGTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TAAAATTAAAAATTTTAATTTTA
Found at i:100818513 original size:5 final size:5
Alignment explanation
Indices: 100818498--100818531 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
100818488 ACAAGTTGTG
100818498 AAAATT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAA
100818532 GAAACACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:100822195 original size:25 final size:25
Alignment explanation
Indices: 100822161--100822211 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
100822151 GTAGGAATGA
100822161 TAGAAAAATGAAAAGAAAAAGTAGT
1 TAGAAAAATGAAAAGAAAAAGTAGT
100822186 TAGAAAAATGAAAAGAAAAAGTAGT
1 TAGAAAAATGAAAAGAAAAAGTAGT
100822211 T
1 T
100822212 TTCTTTCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.18
Consensus pattern (25 bp):
TAGAAAAATGAAAAGAAAAAGTAGT
Found at i:100823441 original size:4 final size:4
Alignment explanation
Indices: 100823432--100823458 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
100823422 GCTTTCACGG
100823432 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
100823459 CATGAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:100828237 original size:16 final size:16
Alignment explanation
Indices: 100828199--100828254 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
100828189 GGCCCATAAG
*
100828199 CAAACCCAACTAA-AC
1 CAAACCCAACTAAGCC
*
100828214 CTAACCCAACTAAGCC
1 CAAACCCAACTAAGCC
100828230 CAAACCCAACTAAGCC
1 CAAACCCAACTAAGCC
100828246 CAAACCCAA
1 CAAACCCAA
100828255 AACCAAAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
15 12 0.32
16 25 0.68
ACGTcount: A:0.46, C:0.43, G:0.04, T:0.07
Consensus pattern (16 bp):
CAAACCCAACTAAGCC
Found at i:100829535 original size:3 final size:3
Alignment explanation
Indices: 100829529--100829589 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
100829519 TTATTTATAT
100829529 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
100829577 TCA TCA TCA TCA T
1 TCA TCA TCA TCA T
100829590 TAATTTACGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:100829623 original size:3 final size:3
Alignment explanation
Indices: 100829607--100829911 Score: 208
Period size: 3 Copynumber: 102.3 Consensus size: 3
100829597 CGATTACTAT
* * * * * *
100829607 TTA TTA TCA ATA TTA TTA TTA CTA TTA TTA CTA TTT TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * * *
100829655 CTA TTA ACA TTA TTA TTA TTA TCA TT- TTA TT- TTA CTA CTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
100829701 TTT TTA GTAA TTA TTA TTA CTA TTA TTA TT- TAA CATA TCA TTA TTG
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * ** * * * *
100829747 CTA TTA TTA TTA CTA TCA TTA TTA TTA TTT TTA CCA -CA CTA CTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
100829794 CTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
100829842 TTA TTA TTA TTA TTT TCTA TTA CTA TTA TTA CTA GTTA TT- TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
*
100829888 TCA TTA TTA TTA -TA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
100829912 CATCATTCTT
Statistics
Matches: 234, Mismatches: 58, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
2 11 0.05
3 216 0.92
4 7 0.03
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:100829718 original size:22 final size:22
Alignment explanation
Indices: 100829666--100829719 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
100829656 TATTAACATT
* *
100829666 ATTATTATTATCATTTTATTTT
1 ATTATTATTATCATTTTATGTA
* *
100829688 ACTACTATTATCATTTT-TAGTA
1 ATTATTATTATCATTTTAT-GTA
100829710 ATTATTATTA
1 ATTATTATTA
100829720 CTATTATTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.59
Consensus pattern (22 bp):
ATTATTATTATCATTTTATGTA
Found at i:100834993 original size:15 final size:15
Alignment explanation
Indices: 100834973--100835002 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100834963 TCAGGCTTAT
*
100834973 ACCCATGACGTATAG
1 ACCCATGACATATAG
100834988 ACCCATGACATATAG
1 ACCCATGACATATAG
100835003 GGAGTTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (15 bp):
ACCCATGACATATAG
Found at i:100837525 original size:81 final size:82
Alignment explanation
Indices: 100837381--100837541 Score: 252
Period size: 81 Copynumber: 2.0 Consensus size: 82
100837371 AATATTCTTT
* * * *
100837381 TATTCTTTTATTTTTCATTCATAATCATATCATGCAAATAATTATTCTTAGATTATTTTGTTCTT
1 TATTCTTTTATTCTTCATTCATAATCATACCATGCAAATAATTATTCATAGATTATTTCGTTCTT
100837446 TGGACTTTT-CTTCAAA
66 TGGACTTTTCCTTCAAA
* *
100837462 TATTCTTTTATTCTTCATTCATAATCATACCATGTAAATAATTATTCATAGATTCTTTCGTTCTT
1 TATTCTTTTATTCTTCATTCATAATCATACCATGCAAATAATTATTCATAGATTATTTCGTTCTT
*
100837527 TGGATTTTTCCTTCA
66 TGGACTTTTCCTTCA
100837542 CCTCCATAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 67 0.93
82 5 0.07
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (82 bp):
TATTCTTTTATTCTTCATTCATAATCATACCATGCAAATAATTATTCATAGATTATTTCGTTCTT
TGGACTTTTCCTTCAAA
Found at i:100841473 original size:20 final size:20
Alignment explanation
Indices: 100841448--100841485 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
100841438 CTATATTGTT
100841448 CATTGTGATAATCTTTTCTA
1 CATTGTGATAATCTTTTCTA
*
100841468 CATTGTGATAGTCTTTTC
1 CATTGTGATAATCTTTTC
100841486 AAGTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (20 bp):
CATTGTGATAATCTTTTCTA
Found at i:100842285 original size:41 final size:42
Alignment explanation
Indices: 100842228--100842649 Score: 174
Period size: 41 Copynumber: 9.8 Consensus size: 42
100842218 GCTATAAGTT
*
100842228 ACAAATCTTATCTCTCTGAAGTTACAACAGAGCAGAT-CATA
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAGATACATA
* * * * * *
100842269 ACAAACCTTATCTCTCTGAAATTGCAGTAGAGCAGGTTGA-AGTT
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCA-GAT-ACA-TA
* * * * *
100842313 ACAAGTCTTATCTCCCTGAAGTTGCAATAGAGCAGACTAAAGATT
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAGA-T--ACATA
* * * *
100842358 ACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAAAT-CATA
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAGATACATA
* * * * * *
100842399 ACAAACCTTATCTC-CTTGAAGTTGCAGTAGAGTAGGTTGA-AGTT
1 ACAAATCTTATCTCTC-TGAAGTTACAATAGAGCA-GAT-ACA-TA
* * * * * * * *
100842443 GCGAGTCTTATCTCCCTAAAGTTGCAGTAGGAGCAGAT-TATA
1 ACAAATCTTATCTCTCTGAAGTTACAATA-GAGCAGATACATA
* * * ** * * * *
100842485 ACAAACCTTATCTCTCTAAAATTGTAGTAGAGCAGGTTAAAGTT
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCA-GATACA-TA
* * * * * * *
100842529 ACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATT
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAGA-T--ACATA
* * *
100842574 ACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAAAT-CATA
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAGATACATA
* * * *
100842615 ACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAG
1 ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAG
100842650 GTTGAAGTTG
Statistics
Matches: 293, Mismatches: 67, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.00
41 97 0.33
42 28 0.10
43 6 0.02
44 89 0.30
45 69 0.24
46 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (42 bp):
ACAAATCTTATCTCTCTGAAGTTACAATAGAGCAGATACATA
Found at i:100842317 original size:136 final size:133
Alignment explanation
Indices: 100842147--100842481 Score: 437
Period size: 130 Copynumber: 2.5 Consensus size: 133
100842137 ACCTTCTTTC
* * **
100842147 CCTGAAGTTGCAGTGGAGCAGGTTAAAGACACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 CCTGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
*
100842212 ATTGAAGCTATAAG-TTACAAATCTTATCTCTCTGAAGTTACAACAGAGCAGATCATAACAAACC
66 ATTG-A-CTA-AAGATTACAAATCTTATCTCTCTGAAGTTACAACAGAGCAAATCATAACAAACC
100842276 TTATCT
128 TTATCT
* * *
100842282 CTCTGAAATTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAATAGAGC-
1 C-CTGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
* ** *
100842346 -A--GACTAAAGATTACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAAATCATAACAAACCTT
65 GATTGACTAAAGATTACAAATCTTATCTCTCTGAAGTTACAACAGAGCAAATCATAACAAACCTT
100842408 ATCT
130 ATCT
* * * *
100842412 CCTTGAAGTTGCAGTAGAGTAGGTTGAAGTTGCGAGTCTTATCTCCCTAAAGTTGCAGTAGGAGC
1 CC-TGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGT-GGAGC
100842477 AGATT
64 AGATT
100842482 ATAACAAACC
Statistics
Matches: 173, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
129 4 0.02
130 105 0.61
131 5 0.03
132 1 0.01
133 1 0.01
134 1 0.01
135 1 0.01
136 55 0.32
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (133 bp):
CCTGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
ATTGACTAAAGATTACAAATCTTATCTCTCTGAAGTTACAACAGAGCAAATCATAACAAACCTTA
TCT
Found at i:100842430 original size:86 final size:86
Alignment explanation
Indices: 100842319--100842562 Score: 289
Period size: 86 Copynumber: 2.8 Consensus size: 86
100842309 AGTTACAAGT
* * ** * * *
100842319 CTTATCTCCCTGAAGTTGCAATAGAGCAGACTAAAGATTACAGA-TCTTATCTCTCTGAAGTTAC
1 CTTATCTCCTTGAAGTTGCAGTAGAGCAGGTTAAAG-TTACAGAGTCTTATCTCCCTAAAGTTGC
*
100842383 AGTAGAGTAAATCATAACAAAC
65 AGTAGAGCAAATCATAACAAAC
* * *
100842405 CTTATCTCCTTGAAGTTGCAGTAGAGTAGGTTGAAGTTGC-GAGTCTTATCTCCCTAAAGTTGCA
1 CTTATCTCCTTGAAGTTGCAGTAGAGCAGGTTAAAGTTACAGAGTCTTATCTCCCTAAAGTTGCA
* *
100842469 GTAGGAGCAGATTATAACAAAC
66 GTA-GAGCAAATCATAACAAAC
* * *
100842491 CTTATCT-CTCTAAAATTGTAGTAGAGCAGGTTAAAGTTACA-AGTCTTATCTCCCTAAAGTTGC
1 CTTATCTCCT-TGAAGTTGCAGTAGAGCAGGTTAAAGTTACAGAGTCTTATCTCCCTAAAGTTGC
100842554 AGTAGAGCA
65 AGTAGAGCA
100842563 GACTGAAGAT
Statistics
Matches: 135, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
84 2 0.01
85 31 0.23
86 102 0.76
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (86 bp):
CTTATCTCCTTGAAGTTGCAGTAGAGCAGGTTAAAGTTACAGAGTCTTATCTCCCTAAAGTTGCA
GTAGAGCAAATCATAACAAAC
Found at i:100842516 original size:216 final size:216
Alignment explanation
Indices: 100842183--100842695 Score: 769
Period size: 216 Copynumber: 2.3 Consensus size: 216
100842173 AGACACAAGT
* * * * *
100842183 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATAAGTTACAAATCTTATCTCTCTGAA
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG-T-T--G---CGAGTCTTATCTCCCTGAA
* ** * *
100842248 GTTACAACA-GAGCAGATCATAACAAACCTTATCTCTCTGAAATTGCAGTAGAGCAGGTTGAAGT
59 ATTACAGTAGGAGCAGATCATAACAAACCTTATCTCTCTAAAATTGCAGTAGAGCAGGTTAAAGT
*
100842312 TACAAGTCTTATCTCCCTGAAGTTGCAATAGAGCAGACTAAAGATTACAGATCTTATCTCTCTGA
124 TACAAGTCTTATCTCCCTAAAGTTGCAATAGAGCAGACTAAAGATTACAGATCTTATCTCTCTGA
*
100842377 AGTTACAGTAGAGTAAATCATAACAAAC
189 AGTTACAGTAGAGCAAATCATAACAAAC
* * *
100842405 CTTATCTCCTTGAAGTTGCAGTAGAGTAGGTTGAAGTTGCGAGTCTTATCTCCCT-AAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTGCGAGTCTTATCTCCCTGAAA-TTACA
* *
100842469 GTAGGAGCAGATTATAACAAACCTTATCTCTCTAAAATTGTAGTAGAGCAGGTTAAAGTTACAAG
65 GTAGGAGCAGATCATAACAAACCTTATCTCTCTAAAATTGCAGTAGAGCAGGTTAAAGTTACAAG
* *
100842534 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATTACAGATCTTATCTCTCTGAAGTTAC
130 TCTTATCTCCCTAAAGTTGCAATAGAGCAGACTAAAGATTACAGATCTTATCTCTCTGAAGTTAC
100842599 AGTAGAGCAAATCATAACAAAC
195 AGTAGAGCAAATCATAACAAAC
100842621 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTGCGAGTCTTATCTCCCTGAAATTACAG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTGCGAGTCTTATCTCCCTGAAATTACAG
100842686 TAGGAGCAGA
66 TAGGAGCAGA
100842696 CTGAAGATAG
Statistics
Matches: 266, Mismatches: 22, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
214 2 0.01
215 18 0.07
216 208 0.78
217 3 0.01
218 1 0.00
220 1 0.00
221 1 0.00
222 32 0.12
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (216 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTGCGAGTCTTATCTCCCTGAAATTACAG
TAGGAGCAGATCATAACAAACCTTATCTCTCTAAAATTGCAGTAGAGCAGGTTAAAGTTACAAGT
CTTATCTCCCTAAAGTTGCAATAGAGCAGACTAAAGATTACAGATCTTATCTCTCTGAAGTTACA
GTAGAGCAAATCATAACAAAC
Found at i:100842539 original size:130 final size:132
Alignment explanation
Indices: 100842405--100842743 Score: 429
Period size: 130 Copynumber: 2.6 Consensus size: 132
100842395 CATAACAAAC
* * ** *
100842405 CTTATCTCCTTGAAGTTGCAGTAGAGTAGGTTGAAG-TTGCGAG-TCTTATCTCCCTAAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGCGAGATCTTATCTCCCTGAAGTTGC
* *
100842468 AGTAGGAGCAGATTATAACAAACCTTATCTCTCTAAAATTGTAGTAGAGCAGGTTAAAGTTACAA
66 AGTAGGAGCAGATTATAACAAACCTTATCTCCCTAAAATTGCAGTAGAGCAGGTTAAAGTTACAA
100842533 GT
131 GT
* * * *
100842535 CTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATTAC-AGATCTTATCTCTCTGAAGTTAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGCGAGATCTTATCTCCCTGAAGTTGC
* * * * * * *
100842599 AGTA-GAGCAAATCATAACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTGCGA
66 AGTAGGAGCAGATTATAACAAACCTTATCTCCCTAAAATTGCAGTAGAGCAGGTTAAAGTTACAA
100842663 GT
131 GT
* * *
100842665 CTTATCTCCCTGAAATTACAGTAGGAGCAGACTGAAGATAGCG-GATCTTATCTCCCTGAAGTTG
1 CTTATCTCCCTGAAGTTGCAGTA-GAGCAGACTGAAGATTGCGAGATCTTATCTCCCTGAAGTTG
*
100842729 CAGT-GGAGTAGATTA
65 CAGTAGGAGCAGATTA
100842744 AAGCTACAAG
Statistics
Matches: 176, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
130 106 0.60
131 70 0.40
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (132 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGCGAGATCTTATCTCCCTGAAGTTGC
AGTAGGAGCAGATTATAACAAACCTTATCTCCCTAAAATTGCAGTAGAGCAGGTTAAAGTTACAA
GT
Found at i:100842625 original size:86 final size:86
Alignment explanation
Indices: 100842535--100842693 Score: 232
Period size: 86 Copynumber: 1.8 Consensus size: 86
100842525 AGTTACAAGT
* *
100842535 CTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGATTAC-AGATCTTATCTCTCTGAAGTTAC
1 CTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAG-TTACGAG-TCTTATCTCCCTGAAATTAC
100842599 AGTA-GAGCAAATCATAACAAAC
64 AGTAGGAGCAAATCATAACAAAC
* ** *
100842621 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTGCGAGTCTTATCTCCCTGAAATTACAG
1 CTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGTTACGAGTCTTATCTCCCTGAAATTACAG
100842686 TAGGAGCA
66 TAGGAGCA
100842694 GACTGAAGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 25 0.38
86 40 0.62
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (86 bp):
CTTATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGTTACGAGTCTTATCTCCCTGAAATTACAG
TAGGAGCAAATCATAACAAAC
Found at i:100842845 original size:51 final size:51
Alignment explanation
Indices: 100842720--100842845 Score: 200
Period size: 51 Copynumber: 2.5 Consensus size: 51
100842710 TCTTATCTCC
* *
100842720 CTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAGTTACAAATCTCATATCT
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTAAAAGTTACAAATCTCATATCT
*
100842771 CTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAAGTTACAAATCTCATATC-
1 CTGAAGTTGCAGTGGAGTAGATTGAAGCTAAAAGTTACAAATCTCATATCT
*
100842821 CTTGAAGTTGTAGTGGAGTAGATTG
1 C-TGAAGTTGCAGTGGAGTAGATTG
100842846 GAACTACAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
50 1 0.01
51 68 0.99
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (51 bp):
CTGAAGTTGCAGTGGAGTAGATTGAAGCTAAAAGTTACAAATCTCATATCT
Found at i:100844423 original size:3 final size:3
Alignment explanation
Indices: 100844417--100844758 Score: 241
Period size: 3 Copynumber: 114.7 Consensus size: 3
100844407 CATCATCATC
* *
100844417 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ACT ATT -TT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
100844463 ATT ACT ATTT ATT ATC AAT ATT ATT ATT ATT ACT ATT TTT ATT TTT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * ** * *
100844509 ATT TTT ATT ACT CTT AAC ATT ATT ATT ATC ATT -TT ATT -TT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
100844555 ATT ATC ATT TTT AGTA ATT ATT ATT ACT ATT ATT ATT -TA ACAT ATT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
* * * ** **
100844601 ATT ATT -TCT ATT ATT ATT ACT ATC ATT ATT ATT ATT TTT ACC ACC
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
100844646 ACT ACT ACT ACT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
100844694 ATT ATT ATT TTCT ATT ACT ATT ATT ACT AGTT ATT -TT ATT ATC ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
100844740 ATT ATT A-T ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
100844759 CATCATTCTT
Statistics
Matches: 265, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
2 14 0.05
3 241 0.91
4 10 0.04
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:100844574 original size:22 final size:22
Alignment explanation
Indices: 100844527--100844580 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
100844517 TACTCTTAAC
* *
100844527 ATTATTATTATCATTTTATTTT
1 ATTATTATTATCATTTTATGTA
*
100844549 ATTACTATTATCATTTT-TAGTA
1 ATTATTATTATCATTTTAT-GTA
100844571 ATTATTATTA
1 ATTATTATTA
100844581 CTATTATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTATTATTATCATTTTATGTA
Found at i:100844603 original size:92 final size:92
Alignment explanation
Indices: 100844435--100844603 Score: 195
Period size: 92 Copynumber: 1.8 Consensus size: 92
100844425 TATTATTATT
* *
100844435 ATTATTATTATTATTTTACTATTTTACTATTACTATTTATTATCAATATTATTATTATTACTATT
1 ATTATTATTATCATTTTACTATTTTACTATTACTATTTATTATCAATATTATTACTATTACTATT
* * *
100844500 TTTATTTTTATTTTTATTACTCTTAAC
66 TTAAATATTATTTTTATTACTCTTAAC
* *
100844527 ATTATTATTATCATTTTA-TTTTATTACTATTA-TCATTT-TTAGT-AATTATTATTACTATTAT
1 ATTATTATTATCATTTTACTATT-TTACTATTACT-ATTTATTA-TCAA-TATTATTACTATTAC
100844588 TA-TTTAACATATTATT
62 TATTTTAA-ATATTATT
100844604 ATTTCTATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
91 13 0.20
92 52 0.80
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.61
Consensus pattern (92 bp):
ATTATTATTATCATTTTACTATTTTACTATTACTATTTATTATCAATATTATTACTATTACTATT
TTAAATATTATTTTTATTACTCTTAAC
Found at i:100845777 original size:20 final size:19
Alignment explanation
Indices: 100845752--100845824 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
100845742 AAAAATATAA
100845752 ATTTTGATTTTTTTATAAA-T
1 ATTTTGA-TTTTTTA-AAACT
* *
100845772 ATTTTGAATTTTAAAAACT
1 ATTTTGATTTTTTAAAACT
* *
100845791 ATTTTGGATTTTTGAAAATT
1 ATTTT-GATTTTTTAAAACT
100845811 ATTTTGAATTTTTT
1 ATTTTG-ATTTTTT
100845825 TGTAATTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
18 3 0.07
19 12 0.27
20 29 0.66
ACGTcount: A:0.32, C:0.01, G:0.08, T:0.59
Consensus pattern (19 bp):
ATTTTGATTTTTTAAAACT
Found at i:100845793 original size:19 final size:18
Alignment explanation
Indices: 100845762--100845822 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 18
100845752 ATTTTGATTT
*
100845762 TTTTATAAATATTTTGAA
1 TTTTAAAAATATTTTGAA
*
100845780 TTTTAAAAACTATTTTGGAT
1 TTTTAAAAA-TATTTT-GAA
*
100845800 TTTTGAAAATTATTTTGAA
1 TTTT-AAAAATATTTTGAA
100845819 TTTT
1 TTTT
100845823 TTTGTAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 8 0.22
19 12 0.33
20 12 0.33
21 4 0.11
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (18 bp):
TTTTAAAAATATTTTGAA
Found at i:100846129 original size:2 final size:2
Alignment explanation
Indices: 100846122--100846153 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
100846112 GTACATATTC
100846122 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100846154 GTAAATTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100851295 original size:182 final size:190
Alignment explanation
Indices: 100850787--100851312 Score: 728
Period size: 182 Copynumber: 2.8 Consensus size: 190
100850777 GAGAGGAAAA
** * **
100850787 AAACTTATGCATATCCAGATTTCTTTAAAAAAGAAAAGTTGTTATGAATTAGCAACCAGGTCGTT
1 AAACTTATGCATATTTAGATTTCTTTAAAAAAGAAAAGTTGTTACGAATTAGCAAATAGGTCGTT
100850852 GTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGC
66 GTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGC
* * * *
100850917 GATCTTAATTTTTTAACCTTTCAAAAGAGGGAAAAGATAGACAACTTGTTTTTGTTCCTTGAAAT
131 GGT-TTTATTTTTTAACCTCTCAAAAGAGGG--AAGATAGA-AACTTATTTTTGTTCC-----AT
100850982 GTAAT
187 GT-AT
* * *
100850987 AAACTTATGCATATTTAGATTTCTTTAAAAAAGAAAAGTTGTTAGGGATTACCAAATAGGTCGTT
1 AAACTTATGCATATTTAGATTTCTTTAAAAAAGAAAAGTTGTTACGAATTAGCAAATAGGTCGTT
*
100851052 GTAGTATAGTGGTTAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGC
66 GTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGC
*
100851117 GGTTTTATTTTTTGACCTCTCAAAAGAGGG-A-A-AG-AACTTATTTTTGTTCC-T-T-T
131 GGTTTTATTTTTTAACCTCTCAAAAGAGGGAAGATAGAAACTTATTTTTGTTCCATGTAT
* *
100851170 -AACTTATGCATATTTAGATTCCTTT-AAAAAGAAGAAGTTGTTACCAATTAGCAAATAGGTCGT
1 AAACTTATGCATATTTAGATTTCTTTAAAAAAGAA-AAGTTGTTACGAATTAGCAAATAGGTCGT
100851233 TGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGG
65 TGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGG
* *
100851298 CGGCTTTAATTTTTA
130 CGGTTTTATTTTTTA
100851313 TATTTTACGT
Statistics
Matches: 303, Mismatches: 22, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
181 8 0.03
182 125 0.41
183 1 0.00
185 1 0.00
186 1 0.00
192 15 0.05
194 2 0.01
195 1 0.00
196 1 0.00
199 24 0.08
200 124 0.41
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (190 bp):
AAACTTATGCATATTTAGATTTCTTTAAAAAAGAAAAGTTGTTACGAATTAGCAAATAGGTCGTT
GTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGC
GGTTTTATTTTTTAACCTCTCAAAAGAGGGAAGATAGAAACTTATTTTTGTTCCATGTAT
Found at i:100853292 original size:9 final size:9
Alignment explanation
Indices: 100853278--100853336 Score: 75
Period size: 9 Copynumber: 6.6 Consensus size: 9
100853268 ATAAGTATAA
100853278 AATTAACCG
1 AATTAACCG
*
100853287 AATTAATCG
1 AATTAACCG
100853296 AATTAACCG
1 AATTAACCG
100853305 AATT-ACCTG
1 AATTAACC-G
* *
100853314 AATTACCCA
1 AATTAACCG
100853323 AATTAACCG
1 AATTAACCG
100853332 AATTA
1 AATTA
100853337 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 3 0.07
9 37 0.88
10 2 0.05
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:100853367 original size:6 final size:6
Alignment explanation
Indices: 100853356--100853401 Score: 74
Period size: 6 Copynumber: 7.5 Consensus size: 6
100853346 AATTATATAT
*
100853356 TTTTTA TTTTTA TTTTTA TTTTTA TTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA TTTTTA TTTTTA TTT
100853402 ATTAAATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 32 0.86
7 5 0.14
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:100853377 original size:19 final size:19
Alignment explanation
Indices: 100853356--100853401 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
100853346 AATTATATAT
*
100853356 TTTTTATTTT-TATTTTTA
1 TTTTTATTTTAGATTTTTA
100853374 TTTTTATTTTAGATTTTTA
1 TTTTTATTTTAGATTTTTA
100853393 TTTTTATTT
1 TTTTTATTT
100853402 ATTAAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTTATTTTAGATTTTTA
Found at i:100853412 original size:31 final size:31
Alignment explanation
Indices: 100853356--100853424 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
100853346 AATTATATAT
**
100853356 TTTTTATTTTTATTTTTATTTTTATTT-TAGA
1 TTTTTATTTTTATTTTTATAATTATTTGTA-A
100853387 TTTTTATTTTTATTTATTA-AATTATTTGTAA
1 TTTTTATTTTTATTT-TTATAATTATTTGTAA
100853418 TTTTTAT
1 TTTTTAT
100853425 GATTGAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 29 0.85
32 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (31 bp):
TTTTTATTTTTATTTTTATAATTATTTGTAA
Found at i:100856649 original size:46 final size:44
Alignment explanation
Indices: 100856545--100856652 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
100856535 TGTCTTTGAC
** * * *
100856545 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
100856589 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
100856635 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
100856653 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:100864037 original size:46 final size:44
Alignment explanation
Indices: 100863933--100864040 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
100863923 TGTCTTTGAC
** * * *
100863933 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
100863977 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
100864023 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
100864041 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:100865183 original size:2 final size:2
Alignment explanation
Indices: 100865176--100865207 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
100865166 AATAATAATA
100865176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100865208 TTTACCCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100867570 original size:26 final size:26
Alignment explanation
Indices: 100867514--100867563 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
100867504 ATAATACTAA
*
100867514 TAAT-AATAAGTAAATATATTTTACT
1 TAATAAATAAGTAAATATATTATACT
100867539 TAATAAATAAGTAAATATATATATA
1 TAATAAATAAGTAAATATAT-TATA
100867564 TATATAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 15 0.68
27 3 0.14
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (26 bp):
TAATAAATAAGTAAATATATTATACT
Found at i:100877209 original size:15 final size:15
Alignment explanation
Indices: 100877177--100877216 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
100877167 CTTCTTCTTC
*
100877177 TTCTTCT-CTT-CTT
1 TTCTTCTCCTTCCCT
100877190 TTCTTCTCCTTCCCT
1 TTCTTCTCCTTCCCT
100877205 TTCTTCTCCTTC
1 TTCTTCTCCTTC
100877217 GCCCACCAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 7 0.29
14 3 0.12
15 14 0.58
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (15 bp):
TTCTTCTCCTTCCCT
Found at i:100877765 original size:51 final size:51
Alignment explanation
Indices: 100877710--100877812 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
100877700 TAAAACCTAA
100877710 AAGAATTGGAAAAAGGATTTTACATTTTAGGTCTAGATTGGATAGCTCTTT
1 AAGAATTGGAAAAAGGATTTTACATTTTAGGTCTAGATTGGATAGCTCTTT
100877761 AAGAATTGGAAAAAGGATTTTACATTTTAGGTCTAGATTGGATAGCTCTTT
1 AAGAATTGGAAAAAGGATTTTACATTTTAGGTCTAGATTGGATAGCTCTTT
100877812 A
1 A
100877813 TCTAAAATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (51 bp):
AAGAATTGGAAAAAGGATTTTACATTTTAGGTCTAGATTGGATAGCTCTTT
Found at i:100878305 original size:22 final size:24
Alignment explanation
Indices: 100878266--100878314 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
100878256 TTTATATCGC
100878266 ATAAAAAATACATGATATCATA-AT
1 ATAAAAAATACATGATAT-ATATAT
*
100878290 ATAAAAATTA-AT-ATATATATAT
1 ATAAAAAATACATGATATATATAT
100878312 ATA
1 ATA
100878315 TATTAAGTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 3 0.13
22 9 0.39
23 2 0.09
24 9 0.39
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAAAAAATACATGATATATATAT
Found at i:100878777 original size:23 final size:23
Alignment explanation
Indices: 100878750--100878796 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
100878740 GTAAGGCTTT
100878750 TGACCACAACAACAAAGAAGGCA
1 TGACCACAACAACAAAGAAGGCA
100878773 TGACCACAACAACAAAGAAGGCA
1 TGACCACAACAACAAAGAAGGCA
100878796 T
1 T
100878797 CAACAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.26, G:0.17, T:0.06
Consensus pattern (23 bp):
TGACCACAACAACAAAGAAGGCA
Found at i:100881617 original size:49 final size:49
Alignment explanation
Indices: 100881523--100881620 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
100881513 CATTTCAATC
* * *
100881523 CTTTTCATAATTTCTTGACATAGTTCATTCGAATACATACATTTCCTTT
1 CTTTTCATAACTTCATGACATAGTTCATTCGAACACATACATTTCCTTT
* * *
100881572 CTTTTTATAACTTCATGACATAGTTCATTTGAACACATACTTTTCCTTT
1 CTTTTCATAACTTCATGACATAGTTCATTCGAACACATACATTTCCTTT
100881621 TTCATGCTCG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.47
Consensus pattern (49 bp):
CTTTTCATAACTTCATGACATAGTTCATTCGAACACATACATTTCCTTT
Found at i:100882007 original size:45 final size:45
Alignment explanation
Indices: 100881957--100882083 Score: 161
Period size: 45 Copynumber: 2.8 Consensus size: 45
100881947 CCTTTGATTT
* * *
100881957 GTGATGCCATAGCGTCTTTTAG-CTGTGGTCTTACTCGATAGAATCA
1 GTGATGCCATAACGTCTTTAAGTC-ATGGTCTTACTCGATAGAAT-A
*
100882003 -TGATGTCATAACGTCTTTAAGTCATGGTCTTACTCGATAGAATA
1 GTGATGCCATAACGTCTTTAAGTCATGGTCTTACTCGATAGAATA
*
100882047 GTGATGCCATAACATCTTTCAA-TCATGGTCTTACTCG
1 GTGATGCCATAACGTCTTT-AAGTCATGGTCTTACTCG
100882084 TTTCTTGTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
44 1 0.01
45 68 0.94
46 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (45 bp):
GTGATGCCATAACGTCTTTAAGTCATGGTCTTACTCGATAGAATA
Found at i:100882180 original size:15 final size:15
Alignment explanation
Indices: 100882151--100882184 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
100882141 CCAATAAACT
100882151 CAATTCATATATAAA
1 CAATTCATATATAAA
100882166 CAATT-ATATATTAAA
1 CAATTCATATA-TAAA
100882181 CAAT
1 CAAT
100882185 CAAAACCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (15 bp):
CAATTCATATATAAA
Found at i:100883125 original size:56 final size:56
Alignment explanation
Indices: 100883063--100883179 Score: 189
Period size: 56 Copynumber: 2.1 Consensus size: 56
100883053 TCTAAACATT
* *
100883063 AAAATTTCTTAACGAAACTTTAACACAACCTTAATAACACTTTGTAAATATTTATA
1 AAAATTTCTTAACGAAAATTTAACACAACCTTAATAACACTTCGTAAATATTTATA
* * *
100883119 AAAATTTCTTAATGAAAATTTAATATAACCTTAATAACACTTCGTAAATATTTATA
1 AAAATTTCTTAACGAAAATTTAACACAACCTTAATAACACTTCGTAAATATTTATA
100883175 AAAAT
1 AAAAT
100883180 ATTCATGGCT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (56 bp):
AAAATTTCTTAACGAAAATTTAACACAACCTTAATAACACTTCGTAAATATTTATA
Found at i:100885437 original size:197 final size:197
Alignment explanation
Indices: 100885102--100885495 Score: 698
Period size: 197 Copynumber: 2.0 Consensus size: 197
100885092 TTCATAATGG
* *
100885102 GCATGGCTTTATTTTCATTCTGATATAAATATATGGAGAAAGTCTTAGTTTTTTAGCTTTCAAAC
1 GCATGGCTTTATTTTCATTCTGATATAAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
* *
100885167 CAAACCCAATTTTTTTTGCTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAATAAGTTATTAT
66 CAAACCCAATTTTTTTTACTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAAGAAGTTATTAT
*
100885232 TATGGTTGTTCAATCACAATTGTATCCTGAAAACTTGAGTTTACTACCTTGGCCCATGTGTGCCC
131 TATGGTTGTTCAATCACAATTGTATCCTGAAAACTTGAGTTTACTACCTTGGCCCATGTGCGCCC
100885297 TT
196 TT
*
100885299 GCATGGCTTTATTTTCATTCTGATATAAGTATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
1 GCATGGCTTTATTTTCATTCTGATATAAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
*
100885364 CAAACCCCATTTTTTTTACTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAAGAAGTTATTAT
66 CAAACCCAATTTTTTTTACTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAAGAAGTTATTAT
* * *
100885429 TATGGTTGTTTAATCACAGTTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGCGCCC
131 TATGGTTGTTCAATCACAATTGTATCCTGAAAACTTGAGTTTACTACCTTGGCCCATGTGCGCCC
100885494 TT
196 TT
100885496 AAGGATTGGA
Statistics
Matches: 187, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
197 187 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (197 bp):
GCATGGCTTTATTTTCATTCTGATATAAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
CAAACCCAATTTTTTTTACTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAAGAAGTTATTAT
TATGGTTGTTCAATCACAATTGTATCCTGAAAACTTGAGTTTACTACCTTGGCCCATGTGCGCCC
TT
Found at i:100886369 original size:7 final size:7
Alignment explanation
Indices: 100886357--100886383 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
100886347 AATCTTAGTA
100886357 TAACATT
1 TAACATT
100886364 TAACATT
1 TAACATT
100886371 TAACATT
1 TAACATT
100886378 TAACAT
1 TAACAT
100886384 GTTATGTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (7 bp):
TAACATT
Found at i:100896843 original size:22 final size:20
Alignment explanation
Indices: 100896810--100896853 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
100896800 TAATTTTAAT
* *
100896810 TTTTTACTTGTTTATAAATTA
1 TTTTTACATGTTAAT-AATTA
100896831 TTTTTATCATGTTAATAATTA
1 TTTTTA-CATGTTAATAATTA
100896852 TT
1 TT
100896854 ATAGTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTTTACATGTTAATAATTA
Found at i:100897522 original size:69 final size:74
Alignment explanation
Indices: 100897379--100897529 Score: 172
Period size: 70 Copynumber: 2.1 Consensus size: 74
100897369 CCCTCAAACC
* *
100897379 CTTTTACTTTCACCCAAAAAAATTTTACTTCCCCCAAACCCTAAAACTTTTTTTTCTTTTATTTT
1 CTTTTACTTTCACCCAAAAAAATTTTACTTCCCCCAAACCC-AAAACTTTTTTTCCTTTTATTTC
100897444 TCCTCCAAAA
65 TCCTCCAAAA
* * *
100897454 CTTTTAC-TTCTCCTAAAAAAA-TTTAC-TCCCCTCAAACCC-CAA-TTTTTTTCCTTTTACTTT
1 CTTTTACTTTCACCCAAAAAAATTTTACTTCCCC-CAAACCCAAAACTTTTTTTCCTTTTA-TTT
100897514 CT-C-CCAAAA
64 CTCCTCCAAAA
*
100897523 TTTTTAC
1 CTTTTAC
100897530 CTCCCGCAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
69 12 0.18
70 14 0.21
71 6 0.09
72 5 0.07
73 12 0.18
74 12 0.18
75 7 0.10
ACGTcount: A:0.28, C:0.29, G:0.00, T:0.43
Consensus pattern (74 bp):
CTTTTACTTTCACCCAAAAAAATTTTACTTCCCCCAAACCCAAAACTTTTTTTCCTTTTATTTCT
CCTCCAAAA
Found at i:100903144 original size:48 final size:48
Alignment explanation
Indices: 100903073--100903164 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
100903063 TTTAAGAAAA
*
100903073 TATGGCAATTAAAGGAAATTCAAGAATTTATAGTAGTTCAACTTCAGT
1 TATGGCAATTAAAGGAAATTCAAGAATCTATAGTAGTTCAACTTCAGT
* *
100903121 TATGGTAATTAAAGGAAATTCAAGAATCTATAGTGGTTCAACTT
1 TATGGCAATTAAAGGAAATTCAAGAATCTATAGTAGTTCAACTT
100903165 AAATTACTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (48 bp):
TATGGCAATTAAAGGAAATTCAAGAATCTATAGTAGTTCAACTTCAGT
Found at i:100905288 original size:91 final size:91
Alignment explanation
Indices: 100905107--100905302 Score: 304
Period size: 91 Copynumber: 2.2 Consensus size: 91
100905097 ACTCTTTGTA
* *
100905107 TAAGGGTTGGTATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAG
1 TAAGGGTTGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTATCTAGTCCTAAG
*
100905172 ACGATACTTTTGGGGCAACACTTTCC
66 ACGACACTTTTGGGGCAACACTTTCC
* * *
100905198 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTATCTAGTCCTAA
1 TAAGGGTTGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-CTTTATCTAGTCCTAA
*
100905263 GACGACACTTTTGTGGCAACA-TTTCC
65 GACGACACTTTTGGGGCAACACTTTCC
*
100905289 TAAGTGTTGGGATA
1 TAAGGGTTGGGATA
100905303 GACTATGCTT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
91 63 0.66
92 33 0.34
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (91 bp):
TAAGGGTTGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTATCTAGTCCTAAG
ACGACACTTTTGGGGCAACACTTTCC
Found at i:100905471 original size:132 final size:132
Alignment explanation
Indices: 100905198--100905667 Score: 604
Period size: 132 Copynumber: 3.5 Consensus size: 132
100905188 AACACTTTCC
* * * *
100905198 TAAGGGTTGGGATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTATCTAGTCCTAA
1 TAAGGGTTGGGATATCTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* * *
100905263 GACGACACTTTTGTGGCAACA-TTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTTTTGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
100905327 TA
131 TA
* * * *
100905329 TAAGGGTTGGGATATCTATGTCTAAGGCAACGCTTGAATAAAAATTGGCTTTTGTATAGTCCTAA
1 TAAGGGTTGGGATATCTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
*
100905394 GACGACACTTTTTTTGTGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTTTTGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
100905459 TA
131 TA
* * * * *
100905461 TAAGGTTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGGTCTCGTTCTAA
1 TAAGGGTTGGGATATCTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* * * *
100905526 GACGACAGTTTTTGTGCGACACTTTCCGAAGTGTTGGGATAGACCGGCCAACATATGCTTTAGCC
66 GACGACACTTTTTTTGCGACACTTTCCTAAGTGTTGGGAT--A---G---AC-TATGCTTTGGCC
100905591 AACTCTTTGTA
122 AACTCTTTGTA
* * * *
100905602 TAAGGGTTGGGATATGC-ATGCCAAAGGCAACACTTAAATAAGAGTTGG-TTTTGTCCAGTCCTA
1 TAAGGGTTGGGATAT-CTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTA
100905665 AGA
65 AGA
100905668 TGATATATAT
Statistics
Matches: 293, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
131 74 0.25
132 137 0.47
134 1 0.00
137 1 0.00
140 16 0.05
141 64 0.22
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (132 bp):
TAAGGGTTGGGATATCTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
GACGACACTTTTTTTGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
TA
Found at i:100905785 original size:130 final size:130
Alignment explanation
Indices: 100905548--100905788 Score: 304
Period size: 130 Copynumber: 1.9 Consensus size: 130
100905538 TGTGCGACAC
* *
100905548 TTTCCGAAGTGTTGGGATAGACCGGCCAACATATGCTTTAGCCAACTCTTTGTATAAGGGTTGGG
1 TTTCCGAAGTGTTGGGATAGACCGGCCAACATACGCTTTAGCCAACTCTTTATATAAGGGTTGGG
****
100905613 ATATGCATGCCAAAGGCAACACTTAAATAAGAGTTGGTTTTGTCCAGTCCTAAGATGATATATAT
66 ATATGCATGCCAAAGGCAACACTTAAATAAGAGTCAACTTTGTCCAGTCCTAAGATGATATATAT
* ** * ** * *
100905678 TTTCCTAAGTGTTGGGATAGACTTGCCGACATACGC-TTAGGTTAACTTTTTATATAAGGGTTGT
1 TTTCCGAAGTGTTGGGATAGACCGGCCAACATACGCTTTA-GCCAACTCTTTATATAAGGGTTGG
** * *
100905742 GATATGCATGCTTAATGCAACGCTTAAATAAGAGTCAACTTTGTCCA
65 GATATGCATGCCAAAGGCAACACTTAAATAAGAGTCAACTTTGTCCA
100905789 ACACTATGCC
Statistics
Matches: 92, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
129 3 0.03
130 89 0.97
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (130 bp):
TTTCCGAAGTGTTGGGATAGACCGGCCAACATACGCTTTAGCCAACTCTTTATATAAGGGTTGGG
ATATGCATGCCAAAGGCAACACTTAAATAAGAGTCAACTTTGTCCAGTCCTAAGATGATATATAT
Found at i:100905919 original size:7 final size:7
Alignment explanation
Indices: 100905898--100905962 Score: 76
Period size: 7 Copynumber: 9.0 Consensus size: 7
100905888 CATGCCTAAT
100905898 GGGTTTA
1 GGGTTTA
100905905 GGGTGTTTA
1 -GG-GTTTA
100905914 GGGTTTA
1 GGGTTTA
* *
100905921 AGTTTTA
1 GGGTTTA
*
100905928 GGATTTA
1 GGGTTTA
100905935 GGGTTTA
1 GGGTTTA
*
100905942 TGGTTTA
1 GGGTTTA
100905949 GGGTTTA
1 GGGTTTA
100905956 GGGTTTA
1 GGGTTTA
100905963 AGATTTAAGA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
7 40 0.82
8 4 0.08
9 5 0.10
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (7 bp):
GGGTTTA
Found at i:100905929 original size:14 final size:14
Alignment explanation
Indices: 100905909--100905969 Score: 68
Period size: 14 Copynumber: 4.4 Consensus size: 14
100905899 GGTTTAGGGT
100905909 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
* * *
100905923 TTTTAGGATTTAGG
1 GTTTAGGGTTTAAG
* *
100905937 GTTTATGGTTTAGG
1 GTTTAGGGTTTAAG
100905951 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
*
100905965 ATTTA
1 GTTTA
100905970 AGAGTTGGCC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Done.