Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 347 of 427
Found at i:100905936 original size:21 final size:21
Alignment explanation
Indices: 100905910--100905969 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
100905900 GTTTAGGGTG
*
100905910 TTTAGGGTTTAAGTTTTAGGA
1 TTTAGGGTTTAAGATTTAGGA
* * *
100905931 TTTAGGGTTTATGGTTTAGGG
1 TTTAGGGTTTAAGATTTAGGA
100905952 TTTAGGGTTTAAGATTTA
1 TTTAGGGTTTAAGATTTA
100905970 AGAGTTGGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (21 bp):
TTTAGGGTTTAAGATTTAGGA
Found at i:100906169 original size:15 final size:14
Alignment explanation
Indices: 100906121--100906175 Score: 74
Period size: 14 Copynumber: 3.9 Consensus size: 14
100906111 AGCTTATATA
* *
100906121 TTTAGGTTTTAGGG
1 TTTAGGGTTTAGAG
*
100906135 TTTAGGGTTTAGAA
1 TTTAGGGTTTAGAG
100906149 TTTAGGGTTTATGAG
1 TTTAGGGTTTA-GAG
100906164 TTTAGGGTTTAG
1 TTTAGGGTTTAG
100906176 GGCGTATGGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
14 23 0.64
15 13 0.36
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTAGAG
Found at i:100906203 original size:15 final size:15
Alignment explanation
Indices: 100906183--100906247 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 15
100906173 TAGGGCGTAT
100906183 GGTTTTAAGGTTT-A
1 GGTTTTAAGGTTTGA
*
100906197 GGATTTTATGGTCTTGA
1 GG-TTTTAAGGT-TTGA
*
100906214 GG-TTTAAGGTTTGT
1 GGTTTTAAGGTTTGA
* *
100906228 GG-TTTAAGGCTTAA
1 GGTTTTAAGGTTTGA
100906242 GGTTTT
1 GGTTTT
100906248 GATAAAAATG
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
14 18 0.44
15 18 0.44
16 2 0.05
17 3 0.07
ACGTcount: A:0.18, C:0.03, G:0.31, T:0.48
Consensus pattern (15 bp):
GGTTTTAAGGTTTGA
Found at i:100909013 original size:26 final size:26
Alignment explanation
Indices: 100908966--100909016 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
100908956 TAGATATTAT
** *
100908966 TTATCATAAATTTTAATATTATTTAA
1 TTATCATAAAGATAAATATTATTTAA
*
100908992 TTATCATAAAGATAAATTTTATTTA
1 TTATCATAAAGATAAATATTATTTA
100909017 TTTTAATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (26 bp):
TTATCATAAAGATAAATATTATTTAA
Found at i:100914215 original size:17 final size:17
Alignment explanation
Indices: 100914195--100914227 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
100914185 GGATATTTCC
100914195 TTGGGCTGTTTTTATTT
1 TTGGGCTGTTTTTATTT
*
100914212 TTGGGTTGTTTTTATT
1 TTGGGCTGTTTTTATT
100914228 CAAATATGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.03, G:0.24, T:0.67
Consensus pattern (17 bp):
TTGGGCTGTTTTTATTT
Found at i:100918536 original size:35 final size:36
Alignment explanation
Indices: 100918374--100918878 Score: 216
Period size: 35 Copynumber: 13.8 Consensus size: 36
100918364 ATTGGAAAAG
* *
100918374 GTCTATCCCAACCTTTTTAGGGTTG-CTGTA-AACAG
1 GTCTATCCCAACCTTTTTAAGGTTGCCT-TAGAACAA
** * * * ** *
100918409 GTCTATTTCAACATTTCTAACGTTATCTTAG-ACAG
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGAACAA
* * * * * *
100918444 GTCAATCTCAACCTTTGCTAAAAGTCGCCTTAG-ATAA
1 GTCTATCCCAACCTTT--TTAAGGTTGCCTTAGAACAA
* * * * *
100918481 GATATATACCAACGTTTTTAAGGTTACCTTAGAAGAA
1 G-TCTATCCCAACCTTTTTAAGGTTGCCTTAGAACAA
* * *
100918518 -TCTATCGCAACCTTTTTAACGTTGCTTTA-AACAA
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGAACAA
100918552 GTCTATCCCAACCTTTTTTTAAGGTTGCCTTAG-ACAA
1 GTCTATCCCAACC--TTTTTAAGGTTGCCTTAGAACAA
* * * *
100918589 TGTCTATTCTAACATTTTTAAAAGGTTGCCTTA-AACAT
1 -GTCTATCCCAACCTTTTT--AAGGTTGCCTTAGAACAA
* *
100918627 GCCTATCCCAACCTTTCCTAAAGGTTGCCTTAG-ACAA
1 GTCTATCCCAACCTTT--TTAAGGTTGCCTTAGAACAA
* * * * *
100918664 GATCTATCTCAACTTTTTTAAAAAGTTACTTTAGATA-AA
1 G-TCTATCCCAACCTTTTT--AAGGTTGCCTTAGA-ACAA
* * ** *
100918703 GTTTATACCAATTTTTTTTAAGGGTTGCTTTAG-ACAA
1 GTCTATCCCAA-CCTTTTTAA-GGTTGCCTTAGAACAA
* **
100918740 GGCATATCCCAACCTTTTTAAGGTTGCCTTA-AATGA
1 GTC-TATCCCAACCTTTTTAAGGTTGCCTTAGAACAA
* * * * *
100918776 GTCAATCCCAACCTTTTAAAGGTTACCATAG-AC-G
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGAACAA
*
100918810 GATCTATCCCAA-CTATTCTTAAAAGTTGCCTTAG-ACAA
1 G-TCTATCCCAACCT-TT-TT-AAGGTTGCCTTAGAACAA
* *
100918848 GAACTATACCAACCTTTTTATA-GTTGCCTTA
1 G-TCTATCCCAACCTTTTTA-AGGTTGCCTTA
100918879 TACAGGTTTA
Statistics
Matches: 350, Mismatches: 85, Indels: 69
0.69 0.17 0.14
Matches are distributed among these distances:
34 7 0.02
35 105 0.30
36 44 0.13
37 89 0.25
38 92 0.26
39 12 0.03
40 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (36 bp):
GTCTATCCCAACCTTTTTAAGGTTGCCTTAGAACAA
Found at i:100918607 original size:37 final size:35
Alignment explanation
Indices: 100918489--100918878 Score: 185
Period size: 37 Copynumber: 10.7 Consensus size: 35
100918479 AAGATATATA
* * *
100918489 CCAACGTTTTTAAGGTTACCTTAGAAGAA-TCTATC
1 CCAACTTTTTTAAGGTTGCCTTA-AACAAGTCTATC
* * * *
100918524 GCAACCTTTTTAACGTTGCTTTAAACAAGTCTATC
1 CCAACTTTTTTAAGGTTGCCTTAAACAAGTCTATC
* *
100918559 CCAACCTTTTTTTAAGGTTGCCTTAGACAATGTCTATT
1 CCAA-C-TTTTTTAAGGTTGCCTTAAACAA-GTCTATC
* * * *
100918597 CTAACATTTTTAAAAGGTTGCCTTAAACATGCCTATC
1 CCAAC-TTTTT-TAAGGTTGCCTTAAACAAGTCTATC
* * *
100918634 CCAACCTTTCCTAAAGGTTGCCTTAGACAAGATCTATC
1 CCAA-CTTT-TTTAAGGTTGCCTTAAACAAG-TCTATC
* * * * * *
100918672 TCAACTTTTTTAAAAAGTTACTTTAGATA-AAGTTTATA
1 CCAACTTTTTT--AAGGTTGCCTTA-A-ACAAGTCTATC
* * * *
100918710 CCAATTTTTTTTAAGGGTTGCTTTAGACAAGGCATATC
1 CCAA-CTTTTTTAA-GGTTGCCTTAAACAAGTC-TATC
* ** *
100918748 CCAACCTTTTTAAGGTTGCCTTAAATGAGTCAATC
1 CCAACTTTTTTAAGGTTGCCTTAAACAAGTCTATC
* * * * * *
100918783 CCAACCTTTTAAAGGTTACCATAGAC-GGATCTATC
1 CCAACTTTTTTAAGGTTGCCTTAAACAAG-TCTATC
* * * * *
100918818 CCAACTATTCTTAAAAGTTGCCTTAGACAAGAACTATA
1 CCAACT-TT-TTTAAGGTTGCCTTAAACAAG-TCTATC
*
100918856 CCAACCTTTTTATA-GTTGCCTTA
1 CCAACTTTTTTA-AGGTTGCCTTA
100918879 TACAGGTTTA
Statistics
Matches: 269, Mismatches: 65, Indels: 41
0.72 0.17 0.11
Matches are distributed among these distances:
34 5 0.02
35 61 0.23
36 30 0.11
37 87 0.32
38 76 0.28
39 9 0.03
40 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (35 bp):
CCAACTTTTTTAAGGTTGCCTTAAACAAGTCTATC
Found at i:100918607 original size:38 final size:38
Alignment explanation
Indices: 100918518--100918799 Score: 174
Period size: 38 Copynumber: 7.7 Consensus size: 38
100918508 CTTAGAAGAA
* * *
100918518 TCTATCGCAACC-TTTTT-AACGTTGCTTTAAACAA-G
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
* *
100918553 TCTATCCCAACCTTTTTTTAAGGTTGCCTTAGACAATG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
* * * *
100918591 TCTATTCTAACATTTTTAAAAGGTTGCCTTAAAC-ATG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
* ** *
100918628 CCTATCCCAACCTTTCCTAAAGGTTGCCTTAGACAA-G
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
* * * * * * *
100918665 ATCTATCTCAA-CTTTTTTAAAAAGTTACTTTAGATAAAG
1 -TCTATCCCAACCTTTTTT-AAAGGTTGCCTTAAACAATG
* * ** * * *
100918704 TTTATACCAATTTTTTTTAAGGGTTGCTTTAGACAA-G
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
* **
100918741 GCATATCCCAACC-TTTTT-AAGGTTGCCTTAAATGA-G
1 TC-TATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
*
100918777 TCAATCCCAACC--TTTTAAAGGTT
1 TCTATCCCAACCTTTTTTAAAGGTT
100918800 ACCATAGACG
Statistics
Matches: 191, Mismatches: 46, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
34 4 0.02
35 26 0.14
36 19 0.10
37 55 0.29
38 80 0.42
39 7 0.04
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (38 bp):
TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAATG
Found at i:100918634 original size:75 final size:75
Alignment explanation
Indices: 100918500--100918864 Score: 218
Period size: 75 Copynumber: 4.9 Consensus size: 75
100918490 CAACGTTTTT
* * * * * *
100918500 AAGGTTACCTTAG--AAGAATCTATCGCAACCTTTTT--AACGTTGCTTTAAACAAGTCTATCCC
1 AAGGTTGCCTTAGACAAG-ATCTATCTCAACATTTTTAAAAGGTTGCCTTAAACAAGCCTATCCC
** *
100918561 AACCTTTTTTT
65 AACCTTTCCTA
*
100918572 AAGGTTGCCTTAGACAATG-TCTAT-TCTAACATTTTTAAAAGGTTGCCTTAAACATGCCTATCC
1 AAGGTTGCCTTAGACAA-GATCTATCTC-AACATTTTTAAAAGGTTGCCTTAAACAAGCCTATCC
100918635 CAACCTTTCCTA
64 CAACCTTTCCTA
* * * * ** *
100918647 AAGGTTGCCTTAGACAAGATCTATCTCAACTTTTTTAAAAAGTTACTTTAGATA-AAGTTTATAC
1 AAGGTTGCCTTAGACAAGATCTATCTCAACATTTTTAAAAGGTTGCCTTA-A-ACAAGCCTATCC
** **
100918711 CAATTTTTTTTA
64 CAACCTTTCCTA
* * * * * ** * *
100918723 AGGGTTGCTTTAGACAAG-GCATATCCCAACCTTTTT--AAGGTTGCCTTAAATGAGTCAATCCC
1 AAGGTTGCCTTAGACAAGATC-TATCTCAACATTTTTAAAAGGTTGCCTTAAACAAGCCTATCCC
100918785 AACCTTT--TA
65 AACCTTTCCTA
* * * * * * * *
100918794 AAGGTTACCATAGAC-GGATCTATCCCAACTATTCTTAAAA-GTTGCCTTAGACAAGAACTATAC
1 AAGGTTGCCTTAGACAAGATCTATCTCAAC-ATTTTTAAAAGGTTGCCTTAAACAAG-CCTATCC
100918857 CAACCTTT
64 CAACCTTT
100918865 TTATAGTTGC
Statistics
Matches: 226, Mismatches: 50, Indels: 33
0.73 0.16 0.11
Matches are distributed among these distances:
70 10 0.04
71 18 0.08
72 26 0.12
73 40 0.18
74 12 0.05
75 73 0.32
76 46 0.20
77 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (75 bp):
AAGGTTGCCTTAGACAAGATCTATCTCAACATTTTTAAAAGGTTGCCTTAAACAAGCCTATCCCA
ACCTTTCCTA
Found at i:100935252 original size:13 final size:13
Alignment explanation
Indices: 100935234--100935271 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
100935224 TTTAATTTTT
100935234 ATTAAAATATTTG
1 ATTAAAATATTTG
100935247 ATTAAAATATTTG
1 ATTAAAATATTTG
*
100935260 ATTAAAAAATTT
1 ATTAAAATATTT
100935272 ACTTGATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (13 bp):
ATTAAAATATTTG
Found at i:100937780 original size:23 final size:24
Alignment explanation
Indices: 100937744--100937794 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
100937734 AAGTGTGTTA
* **
100937744 TAATTTAATATTATTTTATAGATT
1 TAATTAAATATTATAATATAGATT
*
100937768 TAATTAAAT-TTATAATATATATT
1 TAATTAAATATTATAATATAGATT
100937791 TAAT
1 TAAT
100937795 GTGGAGGCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TAATTAAATATTATAATATAGATT
Found at i:100938840 original size:6 final size:6
Alignment explanation
Indices: 100938829--100938878 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
100938819 TAGTGTGGGC
* * *
100938829 CTTTTA CTTTTA CTTTTA CTTTTTA CTTTTTG CTTTTA TTTTTA TTTTTA
1 CTTTTA CTTTTA CTTTTA C-TTTTA C-TTTTA CTTTTA CTTTTA CTTTTA
100938879 TCCTGCTACA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
6 28 0.70
7 12 0.30
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.72
Consensus pattern (6 bp):
CTTTTA
Found at i:100938854 original size:19 final size:18
Alignment explanation
Indices: 100938830--100938878 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
100938820 AGTGTGGGCC
100938830 TTTTACTTTTACTTTTACT
1 TTTTACTTTTACTTTTA-T
*
100938849 TTTTACTTTTTGCTTTTAT
1 TTTTAC-TTTTACTTTTAT
*
100938868 TTTTATTTTTA
1 TTTTACTTTTA
100938879 TCCTGCTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 12 0.46
20 10 0.38
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTACTTTTACTTTTAT
Found at i:100944030 original size:5 final size:6
Alignment explanation
Indices: 100944013--100944043 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
100944003 TAAATCTATG
100944013 TCTTTT TCTTTT TCTTTT TCTTTT TCATTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT
100944044 AACTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:100950951 original size:98 final size:97
Alignment explanation
Indices: 100950777--100951013 Score: 262
Period size: 98 Copynumber: 2.4 Consensus size: 97
100950767 GTGCACATTC
* * ** *
100950777 CCTTTTCAAGTGGTATACACGAAGTATACATACCCTTTTCAATTTGTACACACAAAGTGCATATA
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAATTGGTACACACAAAGT-CATATA
* * * * * **
100950842 AACTTTTCAAGTATACACATATAGTGTACCTTT
65 AACTTTCCAAGTATACACACAAAATGTACATAG
* * *
100950875 CCTTTTCAAGTGATATACACAAAGTATACCTTTCATTTTC-ATATGGTATACACAAAGT-ATACC
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAT-TGGTACACACAAAGTCATA--
* *
100950938 TAACCTTTCCAAGTGTACACACAAAATGTACATAG
63 TAAACTTTCCAAGTATACACACAAAATGTACATAG
*
100950973 CCTTTTCATGTGGTATACACAAAGTATACCTTTCCTTTTCA
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCA
100951014 CATTCAATAG
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
96 3 0.03
97 2 0.02
98 110 0.96
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (97 bp):
CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAATTGGTACACACAAAGTCATATAA
ACTTTCCAAGTATACACACAAAATGTACATAG
Found at i:100950979 original size:65 final size:64
Alignment explanation
Indices: 100950777--100951013 Score: 199
Period size: 65 Copynumber: 3.6 Consensus size: 64
100950767 GTGCACATTC
* * * * * *
100950777 CCTTTTCAAGTGGTATACACGAAGTATACATACCCTTTTCAATTTGTACACACAAAGTGCATATA
1 CCTTTTCAA-TGGTATACACAAAGTATACCTAACCTTTTCAA-GTGTACACACAAAGTGTACATA
100950842 A
64 A
* * ** * * *
100950843 ACTTTTCAA--GTATACACATATAGTGTACCTTTCCTTTTCAAGTGATATACACAAAGTATACCT
1 CCTTTTCAATGGTATACACA-A-AGTATACCTAACCTTTTCAAGTG-TACACACAAAGTGTACAT
**
100950906 TT
63 AA
* * * *
100950908 CATTTTCATATGGTATACACAAAGTATACCTAACCTTTCCAAGTGTACACACAAAATGTACATAG
1 CCTTTTCA-ATGGTATACACAAAGTATACCTAACCTTTTCAAGTGTACACACAAAGTGTACATAA
* **
100950973 CCTTTTCATGTGGTATACACAAAGTATACCTTTCCTTTTCA
1 CCTTTTCA-ATGGTATACACAAAGTATACCTAACCTTTTCA
100951014 CATTCAATAG
Statistics
Matches: 134, Mismatches: 31, Indels: 13
0.75 0.17 0.07
Matches are distributed among these distances:
63 8 0.06
64 3 0.02
65 85 0.63
66 28 0.21
67 1 0.01
68 9 0.07
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (64 bp):
CCTTTTCAATGGTATACACAAAGTATACCTAACCTTTTCAAGTGTACACACAAAGTGTACATAA
Found at i:100951010 original size:33 final size:33
Alignment explanation
Indices: 100950777--100951013 Score: 173
Period size: 33 Copynumber: 7.2 Consensus size: 33
100950767 GTGCACATTC
* * **
100950777 CCTTTTCAAGTGGTATACACGAAGTATACATAC
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
* * * **
100950810 CCTTTTCAATTTGTACACACAAAGTGCATA--TAA
1 CCTTTTCAAGTGGTATACACAAAGT--ATACCTTT
* *
100950843 ACTTTTCAA---GTATACACATATAGTGTACCTTT
1 CCTTTTCAAGTGGTATACACA-A-AGTATACCTTT
*
100950875 CCTTTTCAAGTGATATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
* **
100950908 CATTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGTGGTATACACAAAGTATACCTTT
* * * * * **
100950941 CCTTTCCAAGT-GTACACACAAAATGTACATAG
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
*
100950973 CCTTTTCATGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
100951006 CCTTTTCA
1 CCTTTTCA
100951014 CATTCAATAG
Statistics
Matches: 160, Mismatches: 32, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
30 10 0.06
31 1 0.01
32 38 0.24
33 98 0.61
34 2 0.01
35 11 0.07
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (33 bp):
CCTTTTCAAGTGGTATACACAAAGTATACCTTT
Found at i:100951048 original size:29 final size:29
Alignment explanation
Indices: 100951006--100951074 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
100950996 GTATACCTTT
*
100951006 CCTTTTCACATTCAATAGTCGAAGCTATC
1 CCTTTTCACATTCAATAGCCGAAGCTATC
100951035 CCTTTTCACATTCAATAGCCGAAGCTATC
1 CCTTTTCACATTCAATAGCCGAAGCTATC
100951064 CCTTTTCACAT
1 CCTTTTCACAT
100951075 GGTACACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (29 bp):
CCTTTTCACATTCAATAGCCGAAGCTATC
Found at i:100951773 original size:21 final size:22
Alignment explanation
Indices: 100951727--100951769 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
100951717 TGTAAAAGTG
**
100951727 ATTTCTCTATCAATAACCTTTC
1 ATTTCTCTATCAATAAAATTTC
100951749 ATTTC-CTATC-ATAAAATTTC
1 ATTTCTCTATCAATAAAATTTC
100951769 A
1 A
100951770 ATTTACAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.47
21 5 0.26
22 5 0.26
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTCTCTATCAATAAAATTTC
Found at i:100952134 original size:16 final size:16
Alignment explanation
Indices: 100952104--100952148 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
100952094 TATATTAGGA
*
100952104 CTTATCACTTTTAAT-
1 CTTATAACTTTTAATC
*
100952119 TTTATAACTATTTAATC
1 CTTATAACT-TTTAATC
100952136 CTTATAACTTTTA
1 CTTATAACTTTTA
100952149 GAATTCAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 7 0.28
16 10 0.40
17 8 0.32
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (16 bp):
CTTATAACTTTTAATC
Found at i:100952671 original size:14 final size:15
Alignment explanation
Indices: 100952637--100952672 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
100952627 CAAAATTAAT
100952637 ATTTTTACAATATTC
1 ATTTTTACAATATTC
*
100952652 ATTTTTATAATATTC
1 ATTTTTACAATATTC
100952667 ATTTTT
1 ATTTTT
100952673 CTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTTTACAATATTC
Found at i:100959595 original size:26 final size:26
Alignment explanation
Indices: 100959539--100959645 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
100959529 TGGTACAAAT
*
100959539 TGATAATGGGTTAGGTTAA-GTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100959564 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100959590 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
100959616 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
100959642 TGAT
1 TGAT
100959646 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 17 0.23
26 58 0.77
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:100966239 original size:26 final size:25
Alignment explanation
Indices: 100966202--100966307 Score: 158
Period size: 26 Copynumber: 4.1 Consensus size: 25
100966192 GTACAAATTC
100966202 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAAT-GGTTAGGTAAATGTTCCATG
*
100966228 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGG-TTAGGTAAATGTTCCATG
100966254 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAAT-GGTTAGGTAAATGTTCCATG
*
100966280 ATAATGGTTTACGTAAATGTTCCATG
1 ATAATGG-TTAGGTAAATGTTCCATG
100966306 AT
1 AT
100966308 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.05
26 68 0.92
27 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (25 bp):
ATAATGGTTAGGTAAATGTTCCATG
Found at i:100966264 original size:52 final size:52
Alignment explanation
Indices: 100966202--100966307 Score: 176
Period size: 52 Copynumber: 2.0 Consensus size: 52
100966192 GTACAAATTC
* *
100966202 ATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTACGTAAATATTCCATG
* *
100966254 ATAATAGGTTAGGTAAATGTTCCATGATAATGGTTTACGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTACGTAAATATTCCATG
100966306 AT
1 AT
100966308 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (52 bp):
ATAATAGGTTAGGTAAATGTTCCATGATAATGGATTACGTAAATATTCCATG
Found at i:100971236 original size:18 final size:18
Alignment explanation
Indices: 100971213--100971250 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
100971203 CCATGTGTTA
100971213 GACACAAGGATTGAATAT
1 GACACAAGGATTGAATAT
100971231 GACACAAGGATTGAATAT
1 GACACAAGGATTGAATAT
100971249 GA
1 GA
100971251 GGCGGAGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.21
Consensus pattern (18 bp):
GACACAAGGATTGAATAT
Found at i:100977206 original size:21 final size:21
Alignment explanation
Indices: 100977180--100977224 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
100977170 TCTGTTTGAG
100977180 TATTTGAGGGTAAAACTAAAT
1 TATTTGAGGGTAAAACTAAAT
100977201 TATTTGAGGGTAAAACTAAAT
1 TATTTGAGGGTAAAACTAAAT
100977222 TAT
1 TAT
100977225 CTTTTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (21 bp):
TATTTGAGGGTAAAACTAAAT
Found at i:100979172 original size:40 final size:40
Alignment explanation
Indices: 100979119--100979326 Score: 274
Period size: 40 Copynumber: 5.2 Consensus size: 40
100979109 TCTTCGAAAT
** *
100979119 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
* * *
100979158 TTAACCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
100979198 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
* * *
100979238 TTAACCCGGATATAACAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
* * * * * *
100979278 TTAGCCTGGATATAATCACTAGCATAAATGCCTTTGGGGC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
100979318 TTAGCCCGG
1 TTAGCCCGG
100979327 GTATCATTCA
Statistics
Matches: 146, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 3 0.02
40 143 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
Found at i:100979223 original size:80 final size:80
Alignment explanation
Indices: 100979119--100979330 Score: 318
Period size: 80 Copynumber: 2.7 Consensus size: 80
100979109 TCTTCGAAAT
* *
100979119 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
100979183 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * *
100979198 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGTAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
100979263 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * * *
100979278 TTAGCCTGGATATAATCACTAGCATAAATGCCTTTGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
100979331 CATTCAAATG
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 4 0.03
80 115 0.97
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
AAATGCCTTCGGGTC
Found at i:100985541 original size:23 final size:23
Alignment explanation
Indices: 100985515--100985566 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
100985505 AGGCACTTTA
*
100985515 TGTGTCGTATATCAGGCACCTCG
1 TGTGTCGTATATCAAGCACCTCG
*
100985538 TGTGTC--ATATCAAGCATCTCG
1 TGTGTCGTATATCAAGCACCTCG
*
100985559 TGTATCGT
1 TGTGTCGT
100985567 TTCTGGCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 18 0.75
23 6 0.25
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (23 bp):
TGTGTCGTATATCAAGCACCTCG
Found at i:100989766 original size:13 final size:11
Alignment explanation
Indices: 100989736--100989761 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
100989726 TAGCTGGCAA
100989736 ATATCTTGTAG
1 ATATCTTGTAG
100989747 ATATCTTGTAG
1 ATATCTTGTAG
100989758 ATAT
1 ATAT
100989762 ATCTTTCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (11 bp):
ATATCTTGTAG
Found at i:100992831 original size:18 final size:18
Alignment explanation
Indices: 100992785--100992831 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 18
100992775 TTATCGTTGA
100992785 ATTTATCAT-TTTA-AAT
1 ATTTATCATATTTATAAT
100992801 ATTT-T--TA-TTATAAT
1 ATTTATCATATTTATAAT
100992815 ATTTATCATATTTATAA
1 ATTTATCATATTTATAA
100992832 ATAAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
13 4 0.16
14 7 0.28
15 2 0.08
16 4 0.16
17 2 0.08
18 6 0.24
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATCATATTTATAAT
Found at i:101000271 original size:11 final size:11
Alignment explanation
Indices: 101000255--101000284 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
101000245 TCTTTTTACC
101000255 AAAAAAAAAGA
1 AAAAAAAAAGA
101000266 AAAAAAAAAGA
1 AAAAAAAAAGA
101000277 AAGAAAAA
1 AA-AAAAA
101000285 TTTTTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:101000279 original size:15 final size:14
Alignment explanation
Indices: 101000255--101000284 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
101000245 TCTTTTTACC
101000255 AAAAAAAAAGAAAA
1 AAAAAAAAAGAAAA
101000269 AAAAAAGAAAGAAAA
1 AAAAAA-AAAGAAAA
101000284 A
1 A
101000285 TTTTTTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:101002490 original size:49 final size:48
Alignment explanation
Indices: 101002411--101002675 Score: 237
Period size: 47 Copynumber: 5.6 Consensus size: 48
101002401 GGGATAAGTT
* *
101002411 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTATCATC-TCGAG
* * * *
101002460 GCCGATGCCATGTCTCAGACATCGTTTTACACTAGCTCTCATAT-GTACG
1 GCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTATCATCTCG-A-G
* * * *
101002509 TGCTGATG-CATGTCCCGGACA-CGTCTTACACTAG-TA-CAACTCTTA-
1 -GCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTATCATCTC-GAG
*
101002554 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCGTCGAG
1 GCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTATCATC-TCGAG
* * * * *
101002601 GCCGAT-ACGTGTCCCAGATAT-GTCTTACACTAG-TACTCATCTCTAC
1 GCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTA-TCATCTCGAG
*
101002647 GCCGATGCCATGTCCCAGACATGGTCTTA
1 GCCGATGCCATGTCCCAGACATCGTCTTA
101002676 TACTGGCATT
Statistics
Matches: 175, Mismatches: 27, Indels: 29
0.76 0.12 0.13
Matches are distributed among these distances:
44 30 0.17
45 2 0.01
46 18 0.10
47 50 0.29
48 20 0.11
49 49 0.28
50 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTATCATCTCGAG
Found at i:101002703 original size:141 final size:140
Alignment explanation
Indices: 101002419--101002725 Score: 309
Period size: 141 Copynumber: 2.2 Consensus size: 140
101002409 TTGCCGATGC
* * *
101002419 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCTCAGACATCG
1 CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAGACATCG
* * * * *
101002484 TTTTACACTAGCTCTCATATGTACGTGCTGATGCATGTCCCGGACACGTCTTACACTAGTACAAC
65 TCTTACACTAGCTCTCATATCTACG-GCCGATGCATGTCCCAGACACGTCTTACACTAGTACAAA
* *
101002549 TCTTAGCCGATG
129 TCGTAGCCAATG
* * *
101002561 CATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGAT-ACGTGTCCCAGATAT-GT
1 CATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAGACATCGT
* * * * *
101002624 CTTACACTAG-TACTCATCTCTAC-GCCGATGCCATGTCCCAGACATGGTCTTATACTGGCATTC
66 CTTACACTAGCT-CTCATATCTACGGCCGATG-CATGTCCCAGACA-CGTCTTACACTAG--TAC
*
101002687 ATAAT-GTGGCCAATG
126 A-AATCGTAGCCAATG
* * *
101002702 CATGTTCTAGACATGTCTTACACT
1 CATGTCCCAGACACGTCTTACACT
101002726 AGCACACAAG
Statistics
Matches: 137, Mismatches: 22, Indels: 13
0.80 0.13 0.08
Matches are distributed among these distances:
137 6 0.04
138 13 0.09
139 30 0.22
140 11 0.08
141 62 0.45
142 15 0.11
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAGACATCGT
CTTACACTAGCTCTCATATCTACGGCCGATGCATGTCCCAGACACGTCTTACACTAGTACAAATC
GTAGCCAATG
Found at i:101002718 original size:94 final size:91
Alignment explanation
Indices: 101002517--101002727 Score: 221
Period size: 94 Copynumber: 2.3 Consensus size: 91
101002507 CGTGCTGATG
* *
101002517 CATGTCCCGGACACGTCTTACACTAGTACAACTCTTAGCCGATGCATGTCCCAGACACGTCTTAC
1 CATGTCCCAGACATGTCTTACACTAGTACAACTCTTAGCCGATGCATGTCCCAGACACGTCTTAC
** *
101002582 ACTGGCTATCATCGTCGAGGCCGATA
66 ACTGGCTATCATAATCGAGGCCAATA
* * * *
101002608 CGTGTCCCAGATATGTCTTACACTAGTAC-TCATCTCTACGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGTACAAC-TCT-TA-GCCGATG-CATGTCCCAGACA-CGT
* * *
101002672 CTTATACTGGC-ATTCATAAT-GTGGCCAATG
61 CTTACACTGGCTA-TCATAATCGAGGCCAATA
* *
101002702 CATGTTCTAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
101002728 CACACAAGTA
Statistics
Matches: 98, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
90 1 0.01
91 28 0.29
92 2 0.02
93 7 0.07
94 43 0.44
95 17 0.17
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGTACAACTCTTAGCCGATGCATGTCCCAGACACGTCTTAC
ACTGGCTATCATAATCGAGGCCAATA
Found at i:101006253 original size:49 final size:49
Alignment explanation
Indices: 101006181--101006352 Score: 254
Period size: 49 Copynumber: 3.5 Consensus size: 49
101006171 TGAGGTCACG
101006181 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * * *
101006230 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
*
101006281 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
*
101006330 TGTGTAGTACTAAGTTCAGGCTA
1 TGTGTAGTACTAAGTGCAGGCTA
101006353 TTATGCGTAC
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 62 0.58
50 4 0.04
51 41 0.38
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:101006350 original size:100 final size:100
Alignment explanation
Indices: 101006176--101006368 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
101006166 TATTGTGAGG
101006176 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
101006241 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
*
101006276 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
* *
101006341 AAGTTCAGGCTATTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
101006369 GCTTTGGCTA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:101009653 original size:6 final size:6
Alignment explanation
Indices: 101009644--101009693 Score: 100
Period size: 6 Copynumber: 8.3 Consensus size: 6
101009634 TATATACTGT
101009644 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
101009692 AT
1 AT
101009694 GTACTATCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (6 bp):
ATACAC
Found at i:101009717 original size:6 final size:6
Alignment explanation
Indices: 101009706--101009731 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
101009696 ACTATCTTTC
101009706 CCCAAT CCCAAT CCCAAT CCCAAT CC
1 CCCAAT CCCAAT CCCAAT CCCAAT CC
101009732 GTTTGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15
Consensus pattern (6 bp):
CCCAAT
Found at i:101013826 original size:3 final size:3
Alignment explanation
Indices: 101013818--101013846 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
101013808 AAACCCAAAA
101013818 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
101013847 ACAACTCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:101014417 original size:12 final size:12
Alignment explanation
Indices: 101014400--101014437 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
101014390 ACTGCTCTCG
101014400 CTCCCGCTTCCA
1 CTCCCGCTTCCA
101014412 CTCCCGCTTCCA
1 CTCCCGCTTCCA
*
101014424 CTCCCGCTACCA
1 CTCCCGCTTCCA
101014436 CT
1 CT
101014438 ACCACTACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.11, C:0.58, G:0.08, T:0.24
Consensus pattern (12 bp):
CTCCCGCTTCCA
Found at i:101017061 original size:23 final size:23
Alignment explanation
Indices: 101017016--101017062 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
101017006 CGTAATCTCA
* *
101017016 TGTGTGATATTTTTGTATGAATT
1 TGTGTGATATTTCTGCATGAATT
*
101017039 TGTGTGATATTTCTGCATTAATT
1 TGTGTGATATTTCTGCATGAATT
101017062 T
1 T
101017063 TCCTCTCTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.21, C:0.04, G:0.19, T:0.55
Consensus pattern (23 bp):
TGTGTGATATTTCTGCATGAATT
Found at i:101019552 original size:91 final size:91
Alignment explanation
Indices: 101019447--101019629 Score: 312
Period size: 91 Copynumber: 2.0 Consensus size: 91
101019437 ATAGAAGATT
* * * *
101019447 ATTAATCTAGTCAAGATGGAAGTTAAGGGAACTAAAAATGCTAATTTTATACCACCGTTTAGCTT
1 ATTAATCTAGTCAAGATGGAAGTTAAGGAAAATAAAAATGCTAATTTTATACCAACGTTGAGCTT
101019512 TATACATTAGACTGGAAATGAATTTA
66 TATACATTAGACTGGAAATGAATTTA
* *
101019538 ATTAATCTAGTCAAGATTGAAGTTAAGGAAAATAAAAATGCTAATTTTGTACCAACGTTGAGCTT
1 ATTAATCTAGTCAAGATGGAAGTTAAGGAAAATAAAAATGCTAATTTTATACCAACGTTGAGCTT
101019603 TATACATTAGACTGGAAATGAATTTA
66 TATACATTAGACTGGAAATGAATTTA
101019629 A
1 A
101019630 CTTTCTAATG
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (91 bp):
ATTAATCTAGTCAAGATGGAAGTTAAGGAAAATAAAAATGCTAATTTTATACCAACGTTGAGCTT
TATACATTAGACTGGAAATGAATTTA
Found at i:101020521 original size:16 final size:18
Alignment explanation
Indices: 101020496--101020532 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
101020486 AAGCAAAATG
*
101020496 AAAAGTTAG-AAGAGGAA
1 AAAAGTTAGAAAGAAGAA
101020513 AAAAG-TAGAAAGAAGAA
1 AAAAGTTAGAAAGAAGAA
101020530 AAA
1 AAA
101020533 TTATTTCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (18 bp):
AAAAGTTAGAAAGAAGAA
Found at i:101022230 original size:12 final size:12
Alignment explanation
Indices: 101022213--101022237 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101022203 AAACTTGCAT
101022213 GTGGCAAGCTTG
1 GTGGCAAGCTTG
101022225 GTGGCAAGCTTG
1 GTGGCAAGCTTG
101022237 G
1 G
101022238 CAAAGAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24
Consensus pattern (12 bp):
GTGGCAAGCTTG
Found at i:101024285 original size:32 final size:32
Alignment explanation
Indices: 101024244--101024306 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
101024234 AACATAGGCG
101024244 GTACTGTAAATTTCATTTAAATTCAATGCTCT
1 GTACTGTAAATTTCATTTAAATTCAATGCTCT
101024276 GTACTGTAAATTTCATTTAAATTCAATGCTC
1 GTACTGTAAATTTCATTTAAATTCAATGCTC
101024307 ACACTTAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.43
Consensus pattern (32 bp):
GTACTGTAAATTTCATTTAAATTCAATGCTCT
Found at i:101041584 original size:6 final size:6
Alignment explanation
Indices: 101041556--101041605 Score: 64
Period size: 6 Copynumber: 8.2 Consensus size: 6
101041546 ACAGTACCTA
* * *
101041556 AACAGT AATCAGT AACGGT AGCAGT AGCAGT AACAGT AACAGT AACAGT
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT
101041605 A
1 A
101041606 TTCAAGTGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
6 33 0.85
7 6 0.15
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (6 bp):
AACAGT
Found at i:101045151 original size:17 final size:18
Alignment explanation
Indices: 101045125--101045158 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101045115 ATAAAAATAT
101045125 AAAAACTAAA-ATATTAG
1 AAAAACTAAACATATTAG
*
101045142 AAAAATTAAACATATTA
1 AAAAACTAAACATATTA
101045159 TAGAGTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAACTAAACATATTAG
Found at i:101047533 original size:54 final size:54
Alignment explanation
Indices: 101047435--101047573 Score: 144
Period size: 54 Copynumber: 2.6 Consensus size: 54
101047425 GACAACCAGT
* * * *
101047435 ATAGTCCGTTGGGACAATAAACACGAGGTAGTCCACAGAGACAGTAAACACGAG
1 ATAGTCTGCTGGGACAATAAACACGAGGTAGTCAACAGAGACAGTAAACACGAC
*
101047489 ATTGT-T-CATCGGGACAATAAACAC-AGGATAGT-AATTCAGA-ACAGTAAACACGAC
1 ATAGTCTGC-T-GGGACAATAAACACGAGG-TAGTCAA--CAGAGACAGTAAACACGAC
*
101047543 ATAGTCTGCTGGGACAATAAACACGGGGTAG
1 ATAGTCTGCTGGGACAATAAACACGAGGTAG
101047574 CCAGTCGGGA
Statistics
Matches: 70, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
53 5 0.07
54 56 0.80
55 8 0.11
56 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (54 bp):
ATAGTCTGCTGGGACAATAAACACGAGGTAGTCAACAGAGACAGTAAACACGAC
Found at i:101047617 original size:27 final size:26
Alignment explanation
Indices: 101047582--101047680 Score: 74
Period size: 27 Copynumber: 3.7 Consensus size: 26
101047572 AGCCAGTCGG
* *
101047582 GACAATAAACATGGGGTAGTCTTCCGA
1 GACAGTAAACATGGGGTAGTCTGCC-A
* * * *
101047609 GACAGTAAATAAGGGATAGTCCGCCAA
1 GACAGTAAACATGGGGTAGTCTGCC-A
* * *
101047636 GATAGTAAACATAGGTTAGT-TAGCCA
1 GACAGTAAACATGGGGTAGTCT-GCCA
101047662 GGACAGTAAACATGGGGTA
1 -GACAGTAAACATGGGGTA
101047681 ATCCATTAGG
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.20
Consensus pattern (26 bp):
GACAGTAAACATGGGGTAGTCTGCCA
Found at i:101052606 original size:60 final size:61
Alignment explanation
Indices: 101052499--101052618 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 61
101052489 TTAAAATTGT
* * * * *
101052499 TGAGGGCTAAATTTATTGACTTTTTTAAAATTTGAATTAAAATGATAAATTTTATAAACAC
1 TGAGGGCTAAATTTATTGAATTATTTAAAATTTAAATTAAAATGATAAAATGTATAAACAC
* * * *
101052560 TGAGGGTTAAATTTGTTGAATTATTT-ATATTTAAATTAAATTGATAAAATGTATAAACA
1 TGAGGGCTAAATTTATTGAATTATTTAAAATTTAAATTAAAATGATAAAATGTATAAACA
101052619 ATAAAAAGTT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 28 0.56
61 22 0.44
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (61 bp):
TGAGGGCTAAATTTATTGAATTATTTAAAATTTAAATTAAAATGATAAAATGTATAAACAC
Found at i:101086169 original size:8 final size:8
Alignment explanation
Indices: 101086156--101086182 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
101086146 TATACACTAA
101086156 TTTAAAAT
1 TTTAAAAT
101086164 TTTAAAAT
1 TTTAAAAT
101086172 TTTAAAAT
1 TTTAAAAT
101086180 TTT
1 TTT
101086183 TTAAAGGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAAAT
Found at i:101086613 original size:1 final size:1
Alignment explanation
Indices: 101086607--101086631 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
101086597 TCTCATTCAT
101086607 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
101086632 CAGAGTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:101098051 original size:131 final size:132
Alignment explanation
Indices: 101097894--101098190 Score: 311
Period size: 131 Copynumber: 2.3 Consensus size: 132
101097884 ACGAGAATCA
* * * * *
101097894 CAACCCAGCAC-TATAGGGCATGATTCC-CGAATTGTC-AAA-AGCCAAATAT-TGCCTTTGTTT
1 CAACCCAACACGT-TAGGGCACGATTCCGCGAATTGACTAAATA-CCAAATATCT-CCTTCGTTA
* * * * *
101097954 TAAATAATTTTTAGAAGATATGAATGAAATCTTGAAG-GAACACTCGATTATTTTGGGCAAACGC
63 GAAAGAA-TTTTAAAAGACATGAATGAAATCTTGAAGTG-ACACTCGATTATTTTGAGCAAACGC
101098018 GAAATTG
126 GAAATTG
* * * * *
101098025 CAACCCAACACGTTAGGGCACGATTCCGCGAATT-ACTAAATATCGAATGTCTTCTTCGTTAGGA
1 CAACCCAACACGTTAGGGCACGATTCCGCGAATTGACTAAATACCAAATATCTCCTTCGTTAGAA
* * * * *
101098089 AGAATTTTAAAATACATGAATGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAATGCGAAAT
66 AGAATTTTAAAAGACATGAATGAAATCTTGAAGTGACACTCGATTATTTTGAGCAAACGCGAAAT
101098154 TG
131 TG
*
101098156 CAACCCAACACGTTAGGGCACGATTCCTCGAATTG
1 CAACCCAACACGTTAGGGCACGATTCCGCGAATTG
101098191 CTGAACATCG
Statistics
Matches: 138, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
131 110 0.80
132 26 0.19
133 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (132 bp):
CAACCCAACACGTTAGGGCACGATTCCGCGAATTGACTAAATACCAAATATCTCCTTCGTTAGAA
AGAATTTTAAAAGACATGAATGAAATCTTGAAGTGACACTCGATTATTTTGAGCAAACGCGAAAT
TG
Found at i:101098201 original size:131 final size:131
Alignment explanation
Indices: 101097973--101098227 Score: 377
Period size: 131 Copynumber: 1.9 Consensus size: 131
101097963 TTTAGAAGAT
*
101097973 ATGAATGAAATCTTGAAGGAACACTCGATTATTTTGGGCAAACGCGAAATTGCAACCCAACACGT
1 ATGAATGAAATCTTGAAGGAACACTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGT
* * *
101098038 TAGGGCACGATTCCGCGAATTACTAAATATCGAATGTCTTCTTCGTTAGGAAGAATTTTAAAATA
66 TAGGGCACGATTCCGCGAATTACTAAACATCGAATCTCGTCTTCGTTAGGAAGAATTTTAAAATA
101098103 C
131 C
* * * *
101098104 ATGAATGAAATTTTGAAGTG-ATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACG
1 ATGAATGAAATCTTGAAG-GAACACTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACG
* * * **
101098168 TTAGGGCACGATTCCTCGAATTGCTGAACATCGAATCTCGTCTTCGTTTTGAAGAATTTT
65 TTAGGGCACGATTCCGCGAATTACTAAACATCGAATCTCGTCTTCGTTAGGAAGAATTTT
101098228 TGAATGAATG
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
131 109 0.99
132 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (131 bp):
ATGAATGAAATCTTGAAGGAACACTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGT
TAGGGCACGATTCCGCGAATTACTAAACATCGAATCTCGTCTTCGTTAGGAAGAATTTTAAAATA
C
Found at i:101106179 original size:18 final size:18
Alignment explanation
Indices: 101106156--101106192 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
101106146 AAAATCGGGG
101106156 TTAGTAAATCACCAATTA
1 TTAGTAAATCACCAATTA
101106174 TTAGTAAATCACCAATTA
1 TTAGTAAATCACCAATTA
101106192 T
1 T
101106193 GCCACGATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.35
Consensus pattern (18 bp):
TTAGTAAATCACCAATTA
Found at i:101111269 original size:138 final size:138
Alignment explanation
Indices: 101111035--101111414 Score: 368
Period size: 137 Copynumber: 2.8 Consensus size: 138
101111025 AGAACATCAT
* * * * * * *
101111035 ACTCAAGGATTTAATCGCAATTATCTAACCATCTAACGAAAGGAGCTAATATGTTAAAAATATTA
1 ACTCAAGGATATAATTGCAACTATCTAACCATCTAACCAAA-AAACTAATATGTTAAAAAAATTA
* ** * *
101111100 AT--TAA---AAAAAGTTTGAAGCAACATGAAATAAAAAAATACAAATGCGAGTAATAGAA-GAA
65 ATAAAAATTTAAAAAACTTGAAGCAACATGAAAT-AAAAAATACAAATGCGAATAAGA-AAGGAA
101111159 TCGAA-CTC-AA
128 TCGAATC-CGAA
* * * *
101111169 GATTTAAGGATGTAATTGCAACTATCTAACCATCTAA-CAAAATAACTAATATG-T-AAAATATT
1 -ACTCAAGGATATAATTGCAACTATCTAACCATCTAACCAAAA-AACTAATATGTTAAAAAAATT
* * *
101111231 AATAAAAAATTTAAAAAACTTGAAGCATCATGAAATAAAAAATACAGATGTGAATAAGAAAGGAA
64 AAT-AAAAATTTAAAAAACTTGAAGCAACATGAAATAAAAAATACAAATGCGAATAAGAAAGGAA
*
101111296 TCTAATCCGAA
128 TCGAATCCGAA
* *
101111307 ACTCAAGGATATATTTGCAACTATCTAACCATCTAACCAAAAAATTAATATGTTAAAAAAATTAA
1 ACTCAAGGATATAATTGCAACTATCTAACCATCTAACCAAAAAACTAATATGTTAAAAAAATTAA
* * * * * *
101111372 TTAAAGTTTAAAAAGCTTTAAGCAACATTAAATACAAAATACA
66 TAAAAATTTAAAAAACTTGAAGCAACATGAAATAAAAAATACA
101111415 TGTCACGATC
Statistics
Matches: 202, Mismatches: 30, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
132 11 0.05
133 1 0.00
134 12 0.06
135 33 0.16
136 2 0.01
137 68 0.34
138 65 0.32
139 10 0.05
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (138 bp):
ACTCAAGGATATAATTGCAACTATCTAACCATCTAACCAAAAAACTAATATGTTAAAAAAATTAA
TAAAAATTTAAAAAACTTGAAGCAACATGAAATAAAAAATACAAATGCGAATAAGAAAGGAATCG
AATCCGAA
Found at i:101114249 original size:26 final size:25
Alignment explanation
Indices: 101114202--101114272 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
101114192 AGTCATATCG
*
101114202 GGAAGCTC-CGAAGAGCCATTAATC
1 GGAAGCTCACGAAGAACCATTAATC
* *
101114226 AGGAAGCTCACAAAGAACCTTTAATC
1 -GGAAGCTCACGAAGAACCATTAATC
*
101114252 GAGAAGCTCACGAAGAGCCAT
1 G-GAAGCTCACGAAGAACCAT
101114273 ATAACGGGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 9 0.24
26 29 0.76
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (25 bp):
GGAAGCTCACGAAGAACCATTAATC
Found at i:101125930 original size:13 final size:13
Alignment explanation
Indices: 101125912--101125936 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101125902 ATAACATGTT
101125912 TATTAATTAAAAC
1 TATTAATTAAAAC
101125925 TATTAATTAAAA
1 TATTAATTAAAA
101125937 TTAAAAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATTAATTAAAAC
Found at i:101126925 original size:32 final size:31
Alignment explanation
Indices: 101126889--101126971 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
101126879 AGGGTCTGTG
* **
101126889 CTAACTATTATCACCTGTTAACGAGGCTTGTA
1 CTAACTATTATAACCTGTTAACGA-GCTTAAA
* * *
101126921 CTAACCATTTTAACTTGTTAACGAGCTTAAA
1 CTAACTATTATAACCTGTTAACGAGCTTAAA
* *
101126952 TTAACTATTATAACCCGTTA
1 CTAACTATTATAACCTGTTA
101126972 GTGGGGCTGA
Statistics
Matches: 40, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
31 20 0.50
32 20 0.50
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (31 bp):
CTAACTATTATAACCTGTTAACGAGCTTAAA
Found at i:101127569 original size:2 final size:2
Alignment explanation
Indices: 101127562--101127586 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
101127552 TCTTCTATTT
101127562 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
101127587 TCTTTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:101128885 original size:12 final size:12
Alignment explanation
Indices: 101128868--101128892 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101128858 ATCTTTGCCT
101128868 ACCAAATAAACC
1 ACCAAATAAACC
101128880 ACCAAATAAACC
1 ACCAAATAAACC
101128892 A
1 A
101128893 AGTCCTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.32, G:0.00, T:0.08
Consensus pattern (12 bp):
ACCAAATAAACC
Found at i:101133456 original size:24 final size:24
Alignment explanation
Indices: 101133427--101133479 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
101133417 GGAGAATTGA
**
101133427 TCGTCATCTGATCCTATTTGTTCG
1 TCGTCATCCAATCCTATTTGTTCG
*
101133451 TCGTCATCCAATCCTATTTGTTCT
1 TCGTCATCCAATCCTATTTGTTCG
101133475 TCGTC
1 TCGTC
101133480 TAACATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.28, G:0.13, T:0.45
Consensus pattern (24 bp):
TCGTCATCCAATCCTATTTGTTCG
Found at i:101135552 original size:25 final size:26
Alignment explanation
Indices: 101135518--101135569 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
101135508 TTTTCAAGTT
*
101135518 ATTACTTTTATAAA-TCATTTTATTA
1 ATTACTTTTATAAATTCATTGTATTA
*
101135543 ATTATTTTTATAAATTCATTGTATTA
1 ATTACTTTTATAAATTCATTGTATTA
101135569 A
1 A
101135570 GATTATACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (26 bp):
ATTACTTTTATAAATTCATTGTATTA
Found at i:101135961 original size:21 final size:21
Alignment explanation
Indices: 101135937--101135977 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
101135927 GTTCTTTTTT
101135937 GCTTTTCGTTCCTTCATTTCA
1 GCTTTTCGTTCCTTCATTTCA
101135958 GCTTTTCGTTCCTTCATTTC
1 GCTTTTCGTTCCTTCATTTC
101135978 CACTTCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.07, C:0.29, G:0.10, T:0.54
Consensus pattern (21 bp):
GCTTTTCGTTCCTTCATTTCA
Found at i:101136163 original size:18 final size:18
Alignment explanation
Indices: 101136113--101136163 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
101136103 CTTCATCTTG
*
101136113 TTCTTCTTCACTTAAAAA
1 TTCTTCTTCACTTGAAAA
*
101136131 TTCTTCTTCATTTGAAAA
1 TTCTTCTTCACTTGAAAA
101136149 TTCTTCTTCACTTGA
1 TTCTTCTTCACTTGA
101136164 CCAAATGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.04, T:0.49
Consensus pattern (18 bp):
TTCTTCTTCACTTGAAAA
Found at i:101139835 original size:19 final size:19
Alignment explanation
Indices: 101139793--101139828 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
101139783 ATTACAAAAG
101139793 AAAA-TCAAAAAAATTTTC
1 AAAATTCAAAAAAATTTTC
*
101139811 AAAATTCAAAATAATTTT
1 AAAATTCAAAAAAATTTT
101139829 ATAAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTCAAAAAAATTTTC
Found at i:101140094 original size:22 final size:22
Alignment explanation
Indices: 101140052--101140096 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
101140042 TGTAACAAGA
**
101140052 TTTTAATTTAACATGTTTAATT
1 TTTTAATTTAACATGAATAATT
101140074 TTTTAATTTAAC-TCGAATAATT
1 TTTTAATTTAACAT-GAATAATT
101140096 T
1 T
101140097 AACTCGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTTAATTTAACATGAATAATT
Found at i:101142756 original size:3 final size:3
Alignment explanation
Indices: 101142750--101142795 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
101142740 ATAGTCCAAA
101142750 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
101142796 TGTGAAATGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:101144570 original size:45 final size:44
Alignment explanation
Indices: 101144502--101144793 Score: 233
Period size: 41 Copynumber: 6.6 Consensus size: 44
101144492 CTTAATATGT
*
101144502 TCCACTGCAAC-TCTAGGGAGATAAGACTTGCTATATTCAATCTGC
1 TCCACTGCAACTTC-AGGGAGATAAGACTTG-TATATTCAATCTAC
* * *
101144547 TCCGCTGCAACTTCAGGGAGATAAGACTTGT-T-TT-GATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTATATTCAATCTAC
* * * * *
101144588 TCTACTGCAATTTCAGAGAGATAAGATCTGTGATTTATAGGTTCAATTTAT
1 TCCACTGCAACTTCAGGGAGATAAGA-CT-TG---TATA--TTCAATCTAC
* * * **
101144639 TCCACTGCAAC-TCTAGGGAAATAAGACTTGTTATCTTCAGTCTGT
1 TCCACTGCAACTTC-AGGGAGATAAGACTTG-TATATTCAATCTAC
* *
101144684 TCCACTGCAACTTCAAGGAGATAAGACTTGT-T-TT-GATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTATATTCAATCTAC
* * *
101144725 TCTACTGCAACTTCAGAGAGATAAGACTTGTA-ACTTCAACCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTATA-TTCAATCTAC
*
101144769 TCCACTGCATCTTCAGGGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
101144794 GTTAGTGGCT
Statistics
Matches: 198, Mismatches: 32, Indels: 35
0.75 0.12 0.13
Matches are distributed among these distances:
41 59 0.30
42 6 0.03
43 6 0.03
44 29 0.15
45 58 0.29
46 5 0.03
47 5 0.03
49 2 0.01
50 6 0.03
51 22 0.11
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTATATTCAATCTAC
Found at i:101144747 original size:137 final size:137
Alignment explanation
Indices: 101144501--101144750 Score: 419
Period size: 137 Copynumber: 1.8 Consensus size: 137
101144491 GCTTAATATG
* * *
101144501 TTCCACTGCAACTCTAGGGAGATAAGACTTGCTATATTCAATCTGCTCCGCTGCAACTTCAGGGA
1 TTCCACTGCAACTCTAGGGAAATAAGACTTGCTATATTCAATCTGCTCCACTGCAACTTCAAGGA
* *
101144566 GATAAGACTTGTTTTGATCTGCTCTACTGCAATTTCAGAGAGATAAGATCTGTGATTTATAGGTT
66 GATAAGACTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGGTT
101144631 CAATTTA
131 CAATTTA
* * * *
101144638 TTCCACTGCAACTCTAGGGAAATAAGACTTGTTATCTTCAGTCTGTTCCACTGCAACTTCAAGGA
1 TTCCACTGCAACTCTAGGGAAATAAGACTTGCTATATTCAATCTGCTCCACTGCAACTTCAAGGA
101144703 GATAAGACTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGATAAGA
66 GATAAGACTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGATAAGA
101144751 CTTGTAACTT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 104 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (137 bp):
TTCCACTGCAACTCTAGGGAAATAAGACTTGCTATATTCAATCTGCTCCACTGCAACTTCAAGGA
GATAAGACTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGGTT
CAATTTA
Found at i:101144783 original size:44 final size:41
Alignment explanation
Indices: 101144684--101144793 Score: 123
Period size: 44 Copynumber: 2.6 Consensus size: 41
101144674 TTCAGTCTGT
** *
101144684 TCCACTGCAACTTCA-AGGAGATAAGACTTGTTTTGATCTAC
1 TCCACTGCAACTTCAGA-GAGATAAGACTTGTTTCAACCTAC
*
101144725 TCTACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTAC
1 TCCACTGCAACTTCAGAGAGATAAGACTTGT---TTCAACCTAC
* *
101144769 TCCACTGCATCTTCAGGGAGATAAG
1 TCCACTGCAACTTCAGAGAGATAAG
101144794 GTTAGTGGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
41 28 0.48
42 1 0.02
44 29 0.50
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (41 bp):
TCCACTGCAACTTCAGAGAGATAAGACTTGTTTCAACCTAC
Found at i:101154657 original size:46 final size:44
Alignment explanation
Indices: 101154556--101154663 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
101154546 TGTCTTTGAC
** * * * *
101154556 ATGGACTTACATGAATTATTCCTGTCTCTAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
101154600 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
101154646 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
101154664 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:101161991 original size:46 final size:44
Alignment explanation
Indices: 101161887--101161994 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
101161877 TGTCTTTGAC
** * * *
101161887 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
101161931 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
101161977 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
101161995 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:101168352 original size:27 final size:27
Alignment explanation
Indices: 101168314--101168386 Score: 146
Period size: 27 Copynumber: 2.7 Consensus size: 27
101168304 GTCTTATGAG
101168314 GTTGTTAGCTTGTTAGTAGAAGTAGGA
1 GTTGTTAGCTTGTTAGTAGAAGTAGGA
101168341 GTTGTTAGCTTGTTAGTAGAAGTAGGA
1 GTTGTTAGCTTGTTAGTAGAAGTAGGA
101168368 GTTGTTAGCTTGTTAGTAG
1 GTTGTTAGCTTGTTAGTAG
101168387 CAATTTGAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.04, G:0.33, T:0.40
Consensus pattern (27 bp):
GTTGTTAGCTTGTTAGTAGAAGTAGGA
Found at i:101169359 original size:25 final size:24
Alignment explanation
Indices: 101169302--101169440 Score: 88
Period size: 24 Copynumber: 5.7 Consensus size: 24
101169292 TTTCTAAATT
*
101169302 CTATATTACGTATATATATTTATA
1 CTATATTATGTATATATATTTATA
* *
101169326 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTT-ATA
* * * *
101169351 CTATATTATTTATATATTTTTTTT
1 CTATATTATGTATATATATTTATA
* *
101169375 CTACATGTATCTTATGTATATATTTA-A
1 CTATAT-TAT-GTA--TATATATTTATA
* *
101169402 TTTATATTATGTAT-T-T-TTTACA
1 -CTATATTATGTATATATATTTATA
*
101169424 CTATATTATGTACATAT
1 CTATATTATGTATATAT
101169441 TTTTTTTATA
Statistics
Matches: 89, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
21 15 0.17
22 3 0.03
23 2 0.02
24 25 0.28
25 24 0.27
26 5 0.06
27 3 0.03
28 12 0.13
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (24 bp):
CTATATTATGTATATATATTTATA
Found at i:101169414 original size:22 final size:22
Alignment explanation
Indices: 101169386--101169451 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
101169376 TACATGTATC
101169386 TTATGTATATATTTAATTTATA
1 TTATGTATATATTTAATTTATA
* *
101169408 TTATGTAT-TTTTTACA-CTATA
1 TTATGTATATATTTA-ATTTATA
* **
101169429 TTATGTACATATTTTTTTTATA
1 TTATGTATATATTTAATTTATA
101169451 T
1 T
101169452 CTATTTCATA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (22 bp):
TTATGTATATATTTAATTTATA
Found at i:101181613 original size:89 final size:86
Alignment explanation
Indices: 101181486--101181659 Score: 240
Period size: 89 Copynumber: 2.0 Consensus size: 86
101181476 TATCTTTCAA
* ** *
101181486 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAACCTCAGG--ACACGCCGAGGTATTTTCAATT
* *
101181551 TTTGTTTTTTCAATTTATGCTTTC
64 TCT-ATTTTTCAATTTATGCTTTC
* *
101181575 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAACCTCAGGGCACGCCGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAACCTCAGGACACGCCGAGGTATTTTCAATTTC
*
101181640 TATTTTTCAATTTTTGCTTT
66 TATTTTTCAATTTATGCTTT
101181660 TAATTTCTGT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
86 17 0.22
87 21 0.28
89 38 0.50
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGCTGAACCTCAGGACACGCCGAGGTATTTTCAATTTC
TATTTTTCAATTTATGCTTTC
Found at i:101181821 original size:99 final size:99
Alignment explanation
Indices: 101181571--101181845 Score: 399
Period size: 100 Copynumber: 2.8 Consensus size: 99
101181561 CAATTTATGC
* * * *
101181571 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAACCTCAGGGCACGCCGAGGTATTTTTAA
1 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
* ** * *
101181636 TTTCTATTTTTCAATTTTTGCTTTTAATTTCTGTT
65 TTTCTGTTTTTCAATTTTTGCTTACAAATTCTGCT
101181671 TTTCTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
1 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
101181736 TTTCTGTTTTTCAATTTTTGCCTTACAAATTCTGCT
65 TTTCTGTTTTTCAATTTTTG-CTTACAAATTCTGCT
* * *
101181772 TTTC-AAATCAACTCATATTGCGAGAAGTGATTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
*
101181836 TTTTGTTTTT
66 TTCTGTTTTT
101181846 TTAGTTTATA
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
99 66 0.41
100 79 0.49
101 15 0.09
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (99 bp):
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
TTCTGTTTTTCAATTTTTGCTTACAAATTCTGCT
Found at i:101182043 original size:74 final size:74
Alignment explanation
Indices: 101181861--101182595 Score: 995
Period size: 74 Copynumber: 10.0 Consensus size: 74
101181851 TTATAGTTCT
* * * *
101181861 AAAAAATCAA-TTATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
*
101181925 -TGTTTGTC
66 CTGTTTTTC
* * *
101181933 -AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
101181997 CTGTTTTTC
66 CTGTTTTTC
* * *
101182006 AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
* *
101182071 TTGTTTGTC
66 CTGTTTTTC
*
101182080 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
* *
101182144 CTGTCTTTA
66 CTGTTTTTC
* * *
101182153 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
* *
101182218 TTGTTTGTC
66 CTGTTTTTC
* *
101182227 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAGTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
**
101182291 CTGTCTTTAA
66 CTGT-TTTTC
* * * *
101182301 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACATGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
101182366 CTGTTTTTC
66 CTGTTTTTC
* * *
101182375 AAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
* *
101182438 TTGTTTGTC
66 CTGTTTTTC
*
101182447 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
**
101182511 CTGTCTTTAAA
66 CTGT-TTT-TC
* * * *
101182522 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
*
101182585 CTGTTCTTC
66 CTGTTTTTC
101182594 AA
1 AA
101182596 TTTCTGTGTT
Statistics
Matches: 582, Mismatches: 70, Indels: 22
0.86 0.10 0.03
Matches are distributed among these distances:
71 47 0.08
72 75 0.13
73 158 0.27
74 199 0.34
75 64 0.11
76 39 0.07
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
CTGTTTTTC
Found at i:101182127 original size:147 final size:147
Alignment explanation
Indices: 101181861--101182595 Score: 1036
Period size: 147 Copynumber: 5.0 Consensus size: 147
101181851 TTATAGTTCT
* *
101181861 AAAAAATCAA-TTATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-TT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* *
101181924 TTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
66 TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
101181989 TTCAATTTCTGTTTTTC
131 TTCAATTTCTGTTTTTC
*
101182006 AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
101182071 TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
66 TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
* *
101182136 TTCAATTTCTGTCTTTA
131 TTCAATTTCTGTTTTTC
*
101182153 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
101182218 TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
66 TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
* **
101182283 TTCAAGTTCTGTCTTTAA
131 TTCAATTTCTGT-TTTTC
* * * * * *
101182301 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACATGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* * * * * *
101182366 CTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAA
66 TTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
* *
101182429 TTTCAATTTTTGTTTGTC
130 TTTCAATTTCTGTTTTTC
* * *
101182447 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* * * * *
101182511 CTGTCTT-TAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGG
66 TTGT-TTGT---CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
* * *
101182573 TGTTTTCCATTTCTGTTCTTC
127 TATTTTCAATTTCTGTTTTTC
101182594 AA
1 AA
101182596 TTTCTGTGTT
Statistics
Matches: 541, Mismatches: 40, Indels: 15
0.91 0.07 0.03
Matches are distributed among these distances:
145 76 0.14
146 52 0.10
147 303 0.56
148 71 0.13
149 39 0.07
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (147 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
TTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
TTCAATTTCTGTTTTTC
Found at i:101182436 original size:220 final size:220
Alignment explanation
Indices: 101181873--101182595 Score: 1046
Period size: 220 Copynumber: 3.3 Consensus size: 220
101181863 AAAATCAATT
* * * * *
101181873 ATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT-TGTTTGTC-AAA
1 ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
* * * * *
101181936 ACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGT
66 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTAATTTCAATTTTTGT
* * * * *
101182001 TTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
129 TTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * *
101182066 AATTTTTGT-TTGT--CAAAAATCAACTC
193 AATTTCTGTCTT-TAAAAAAAATCAGCTC
* * * *
101182092 ATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAA
1 ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
* *
101182157 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
66 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGACGCTGAGGTAATTTCAATTTTTGT
101182222 TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
129 TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
*
101182287 AGTTCTGTCTTTAAAAAAAATCAGCTC
194 ATTTCTGTCTTTAAAAAAAATCAGCTC
* *
101182314 ATATTGCGAGAGGTGAGTTGAACCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTTTTCAAAA
1 ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
* *
101182379 AATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCTGAGGTAATTTCAATTTTTGTTT
66 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTTTGTTT
101182444 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
131 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
101182509 TTCTGTCTTTAAAAAAAAATCAGCTC
196 TTCTGTCTTT-AAAAAAAATCAGCTC
* * *
101182535 ATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAA
1 ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
101182596 TTTCTGTGTT
Statistics
Matches: 459, Mismatches: 37, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
219 75 0.16
220 170 0.37
221 108 0.24
222 105 0.23
223 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (220 bp):
ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTTTGTTT
GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
TTCTGTCTTTAAAAAAAATCAGCTC
Found at i:101182702 original size:15 final size:14
Alignment explanation
Indices: 101182666--101182698 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
101182656 CGCTGAGGTA
101182666 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
101182680 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
101182694 TTTTC
1 TTTTC
101182699 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:101182810 original size:92 final size:89
Alignment explanation
Indices: 101182521--101183084 Score: 388
Period size: 87 Copynumber: 6.3 Consensus size: 89
101182511 CTGTCTTTAA
* * * * *
101182521 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTGTTTTCCATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATT
* *
101182584 TCTGTTCTTCAATTTCTGTGTT-TC
66 TCTGTTTTTCAATTTATGT-TTGTC
** * * *
101182608 AAAAAAATCAGTTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GCACACGCTGAGGTATTTTCAA
* *
101182673 ATTCTGTTTTTCAAATTT-TGTTTTTC
64 TTTCTGTTTTTC-AATTTATGTTTGTC
* * * * *
101182699 CAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATT
*
101182764 TCTTTTTTTTTTCAATTTATGTTTGTC
66 TC---TGTTTTTCAATTTATGTTTGTC
* * **
101182791 AAAAAAATCAACACATATTGCGAGAGGTGAGTTCAGCCTCAGATCACACGCCAAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACACGCTGAGGTATTTTC-A
* *
101182856 TTGATTTTTTTTTTTTCAATTTATGCTTTG-C
63 ---A-TTTCTGTTTTTCAATTTATG-TTTGTC
* * * * * ** **
101182887 --AAAAATCAACTCATATTACAAGAGATAAGTTGAGCCTCGGGTCACATACCAAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-CACACGCTGAGGTATTTTCAA
** *
101182950 AATCTGTTTTACAAATTT-TGTTT-T-
64 TTTCTGTTTTTC-AATTTATGTTTGTC
* * ** * *
101182974 --AAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACAC--GCTGAGGTATTTTCAA
*
101183037 TTTTTGTTTTT-AATGTT-TAGTTT-T-
64 TTTCTGTTTTTCAAT-TTAT-GTTTGTC
* *
101183061 -AAAAAGTCAATTCATATTGCGAGA
1 AAAAAAATCAACTCATATTGCGAGA
101183085 AATGAGTTAA
Statistics
Matches: 390, Mismatches: 61, Indels: 51
0.78 0.12 0.10
Matches are distributed among these distances:
85 6 0.02
86 5 0.01
87 92 0.24
88 26 0.07
89 31 0.08
90 10 0.03
91 69 0.18
92 58 0.15
93 1 0.00
94 65 0.17
95 2 0.01
96 17 0.04
97 4 0.01
98 1 0.00
99 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (89 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATT
TCTGTTTTTCAATTTATGTTTGTC
Found at i:101182840 original size:183 final size:178
Alignment explanation
Indices: 101182522--101182855 Score: 420
Period size: 183 Copynumber: 1.8 Consensus size: 178
101182512 TGTCTTTAAA
* * * * * * *
101182522 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
* *** * * *
101182587 GTTCTTCAATTTCTGTGTTTCAAAAAAATCAGTTCATATTGCGAGTGGTGAGTTGAGCCTTGACT
66 GTTCTTCAATTTATGTGTTTCAAAAAAATCAACACATATTGCGAGAGGTGAGTTCAGCCTAGACT
**
101182652 CACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
131 CACACGCCAAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
*
101182700 AAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCA--ACACGCTGAGATATTTTCAATTT
* *
101182765 CTTTTTTTTTTCAATTTATGT-TTGTCAAAAAAATCAACACATATTGCGAGAGGTGAGTTCAGCC
64 C---TGTTCTTCAATTTATGTGTT-TCAAAAAAATCAACACATATTGCGAGAGGTGAGTTCAGCC
101182829 TCAGA-TCACACGCCAAGGTATTTTCAA
125 T-AGACTCACACGCCAAGGTATTTTCAA
101182856 TTGATTTTTT
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
178 36 0.28
180 20 0.15
182 2 0.02
183 70 0.54
184 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (178 bp):
AAAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
GTTCTTCAATTTATGTGTTTCAAAAAAATCAACACATATTGCGAGAGGTGAGTTCAGCCTAGACT
CACACGCCAAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
Found at i:101182895 original size:94 final size:92
Alignment explanation
Indices: 101182591--101182949 Score: 320
Period size: 94 Copynumber: 3.9 Consensus size: 92
101182581 ATTTCTGTTC
* ** * * * * *
101182591 TTCAATTTCTGTGTT-TCAAAAAAATCAGTTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCAC
1 TTCAATTTATGT-TTGTC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCC-TCAGTCAC
** * *
101182655 ACGCTGAGGTATTTTCAAATTC---TGTTT
63 ACGCCAAGGTATTTTCAATTTCTTTTTTTT
* *
101182682 TTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAG-GACA
1 TTC-AATTTATGTTTGT-CAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGTCACA
** *
101182745 CGCTGAGATATTTTCAATTTCTTTTTTTT
64 CGCCAAGGTATTTTCAATTTCTTTTTTTT
* *
101182774 TTCAATTTATGTTTGTCAAAAAAATCAACACATATTGCGAGAGGTGAGTTCAGCCTCAGATCACA
1 TTCAATTTATGTTTGTC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAG-TCACA
*
101182839 CGCCAAGGTATTTTCAATTGATTTTTTTTTT
64 CGCCAAGGTATTTTCAATT--TCTTTTTTTT
* * * * *
101182870 TTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACAAGAGATAAGTTGAGCCTCGGGTCACA
1 TTCAATTTATG-TTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTC-AGTCACA
**
101182933 TACCAAGGTATTTTCAA
64 CGCCAAGGTATTTTCAA
101182950 AATCTGTTTT
Statistics
Matches: 226, Mismatches: 28, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
89 22 0.10
90 4 0.02
91 45 0.20
92 58 0.26
94 71 0.31
95 1 0.00
96 21 0.09
97 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (92 bp):
TTCAATTTATGTTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGTCACACG
CCAAGGTATTTTCAATTTCTTTTTTTT
Found at i:101183763 original size:30 final size:30
Alignment explanation
Indices: 101183727--101183855 Score: 195
Period size: 30 Copynumber: 4.3 Consensus size: 30
101183717 CTAGCCTTTG
101183727 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
101183757 CCACCACCAACTCCACTAGTCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
101183787 CCACCACCTACTCTACTAGCCACACTTACT
1 CCACCACCAACTCCACTAGCCACACTTGCT
** *
101183817 CCACCACTTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
101183847 CCACCACCA
1 CCACCACCA
101183856 CTTGTACCTA
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 88 1.00
ACGTcount: A:0.26, C:0.48, G:0.05, T:0.20
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:101184381 original size:22 final size:24
Alignment explanation
Indices: 101184332--101184377 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
101184322 TTTTTTTTGT
101184332 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
101184355 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
101184378 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:101184437 original size:27 final size:25
Alignment explanation
Indices: 101184397--101184467 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
101184387 ATTCTAAATT
101184397 CTATATTACGTATATATATA-TT-ATA
1 CTATATTA--TATATATATATTTAATA
* * *
101184422 CTATTTTATGTATATATCTTTAATA
1 CTATATTATATATATATATTTAATA
101184447 CTATATTATATATATATATTT
1 CTATATTATATATATATATTT
101184468 TTTTCTACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
23 8 0.21
24 2 0.05
25 28 0.74
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (25 bp):
CTATATTATATATATATATTTAATA
Found at i:101184634 original size:25 final size:24
Alignment explanation
Indices: 101184606--101184661 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
101184596 GTTATATTTT
*
101184606 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
101184631 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
101184654 CACTATTA
1 CACTATTA
101184662 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:101186459 original size:18 final size:17
Alignment explanation
Indices: 101186429--101186482 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
101186419 GGCGGGGAAA
101186429 ATTT-TATTT-TTTAAT
1 ATTTATATTTATTTAAT
101186444 ATAATTAT-TTTATTTAAT
1 AT--TTATATTTATTTAAT
*
101186462 ATTTATATTTATATAAT
1 ATTTATATTTATTTAAT
101186479 ATTT
1 ATTT
101186483 TTTTTAGTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 2 0.06
16 4 0.12
17 18 0.55
18 9 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
ATTTATATTTATTTAAT
Found at i:101186478 original size:17 final size:16
Alignment explanation
Indices: 101186431--101186488 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
101186421 CGGGGAAAAT
101186431 TTTATTTT-T-TAATA
1 TTTATTTTATATAATA
*
101186445 TAATTATTTTATTTAATA
1 T--TTATTTTATATAATA
101186463 TTTATATTTATATAATA
1 TTTAT-TTTATATAATA
*
101186480 TTTTTTTTA
1 TTTATTTTA
101186489 GTTTTTATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 1 0.03
16 15 0.41
17 15 0.41
18 6 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATTTTATATAATA
Found at i:101186532 original size:23 final size:22
Alignment explanation
Indices: 101186469--101186533 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
101186459 AATATTTATA
* *
101186469 TTTATATAATATTTTTTTTAGTT
1 TTTATA-AAAATTTTTTTTAATT
* *
101186492 TTTATAATAATTAATTTTTAATT
1 TTTATAAAAATT-TTTTTTAATT
* *
101186515 TTTTTAAAAACTTTTTTTA
1 TTTATAAAAATTTTTTTTA
101186534 GAATAATTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTATAAAAATTTTTTTTAATT
Found at i:101187910 original size:20 final size:20
Alignment explanation
Indices: 101187887--101187927 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
101187877 TTCATCTCAC
* *
101187887 TCAATTCAATTTAAAAAAAT
1 TCAAATCAAATTAAAAAAAT
101187907 TCAAATCAAATTAAAAAAAT
1 TCAAATCAAATTAAAAAAAT
101187927 T
1 T
101187928 TTATTAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.32
Consensus pattern (20 bp):
TCAAATCAAATTAAAAAAAT
Found at i:101191374 original size:3 final size:3
Alignment explanation
Indices: 101191366--101191416 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
101191356 GTAATTAGCC
101191366 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
101191414 TAA
1 TAA
101191417 AACAGAACAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:101192534 original size:23 final size:23
Alignment explanation
Indices: 101192481--101192680 Score: 251
Period size: 23 Copynumber: 8.6 Consensus size: 23
101192471 GGACTCACCA
*
101192481 CAGCTCGAAAGAGCTTACCGATATTT
1 CAGCTCAAAAGAGCTTACCG---TTT
*
101192507 CAGCTCAAAGGAGCTTACCGTTT
1 CAGCTCAAAAGAGCTTACCGTTT
101192530 CAGCTCAAAAGAGCTTACCGTTT
1 CAGCTCAAAAGAGCTTACCGTTT
101192553 CAGCTCAAAAGAGCTTACCGTTT
1 CAGCTCAAAAGAGCTTACCGTTT
* * *
101192576 CAGCTTAAAGGAGCTTACCATTT
1 CAGCTCAAAAGAGCTTACCGTTT
* * *
101192599 -AACTCGAAAGAACTTACCGTTT
1 CAGCTCAAAAGAGCTTACCGTTT
* * *
101192621 CAGCT-TAAAGAAGCTTATCATTT
1 CAGCTCAAAAG-AGCTTACCGTTT
101192644 CAGCTCAAAAGAGCTTACCGTTT
1 CAGCTCAAAAGAGCTTACCGTTT
101192667 CAGCTCAAAAGAGC
1 CAGCTCAAAAGAGC
101192681 CTATCGATCA
Statistics
Matches: 151, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
22 20 0.13
23 109 0.72
24 4 0.03
26 18 0.12
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (23 bp):
CAGCTCAAAAGAGCTTACCGTTT
Found at i:101193678 original size:23 final size:23
Alignment explanation
Indices: 101193652--101193698 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
101193642 GTGATTTGGC
101193652 TTAACTTGGCTAAATATTGGTTA
1 TTAACTTGGCTAAATATTGGTTA
101193675 TTAACTTGGCTAAATATTGGTTA
1 TTAACTTGGCTAAATATTGGTTA
101193698 T
1 T
101193699 GTATATGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.45
Consensus pattern (23 bp):
TTAACTTGGCTAAATATTGGTTA
Found at i:101195797 original size:20 final size:20
Alignment explanation
Indices: 101195772--101195809 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
101195762 ATCACTTATA
101195772 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
101195792 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
101195810 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:101197788 original size:18 final size:18
Alignment explanation
Indices: 101197765--101197810 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
101197755 CAACCAGTTC
* *
101197765 AATTAAAAAA-TTATTAAT
1 AATTAAAAAACTT-TAAAA
101197783 AATTAAAAAACTTTAAAA
1 AATTAAAAAACTTTAAAA
101197801 AATTAAAAAA
1 AATTAAAAAA
101197811 ACTCAGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
AATTAAAAAACTTTAAAA
Found at i:101201576 original size:11 final size:11
Alignment explanation
Indices: 101201534--101201574 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
101201524 ATGAAGAATT
101201534 ATAATTTCTTC
1 ATAATTTCTTC
101201545 ATAATTCTCTTC
1 ATAATT-TCTTC
* *
101201557 ATAATTTTTTA
1 ATAATTTCTTC
101201568 ATAATTT
1 ATAATTT
101201575 TTGTATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (11 bp):
ATAATTTCTTC
Found at i:101206178 original size:20 final size:20
Alignment explanation
Indices: 101206150--101206189 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
101206140 AAAGTTTTGG
*
101206150 TTTAGTGATACAATTAATAT
1 TTTAGTGATACAAATAATAT
* *
101206170 TTTATTGATGCAAATAATAT
1 TTTAGTGATACAAATAATAT
101206190 GGGTTCAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (20 bp):
TTTAGTGATACAAATAATAT
Found at i:101206886 original size:2 final size:2
Alignment explanation
Indices: 101206879--101206919 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
101206869 TGTCTTAAGT
*
101206879 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
101206920 TCCTTTGCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:101211544 original size:12 final size:13
Alignment explanation
Indices: 101211519--101211548 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
101211509 AGATATCAGT
101211519 CTGATATAAAGAA
1 CTGATATAAAGAA
101211532 CTGATAT-AAGAA
1 CTGATATAAAGAA
101211544 CTGAT
1 CTGAT
101211549 CCTTGAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.27
Consensus pattern (13 bp):
CTGATATAAAGAA
Found at i:101222885 original size:21 final size:20
Alignment explanation
Indices: 101222848--101222891 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
101222838 TTATATATAC
* * *
101222848 TTTTTTAAATGTTTATAATT
1 TTTTTTAAATATATATAAAT
101222868 TTTTTTAAAATATATATAAAT
1 TTTTTT-AAATATATATAAAT
101222889 TTT
1 TTT
101222892 GGGATTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTTTAAATATATATAAAT
Found at i:101223471 original size:21 final size:22
Alignment explanation
Indices: 101223447--101223494 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
101223437 AGTGTGTTAG
101223447 AGTTTA-GGGTTAGGGTTTTAA
1 AGTTTATGGGTTAGGGTTTTAA
*
101223468 AG-TTATGGTTTAGGGTTTTAA
1 AGTTTATGGGTTAGGGTTTTAA
*
101223489 AATTTA
1 AGTTTA
101223495 AATTGATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 3 0.13
21 17 0.74
22 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (22 bp):
AGTTTATGGGTTAGGGTTTTAA
Found at i:101223801 original size:32 final size:32
Alignment explanation
Indices: 101223764--101223875 Score: 129
Period size: 32 Copynumber: 3.5 Consensus size: 32
101223754 TGCGCAAGTC
* * *
101223764 TGTGAAATAATAACAAATATTAGCTTTCATTT
1 TGTGAAATGATAACAAATATCAACTTTCATTT
* *
101223796 CGTGAAATGGTAACAAAT-TACAAC-TTCAATTT
1 TGTGAAATGATAACAAATAT-CAACTTTC-ATTT
*
101223828 TGTGAAATGATAACAAATATCAACTTTAATTT
1 TGTGAAATGATAACAAATATCAACTTTCATTT
*
101223860 TGTTAAATGATAACAA
1 TGTGAAATGATAACAA
101223876 TATTCTTCTA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
31 4 0.06
32 60 0.90
33 3 0.04
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (32 bp):
TGTGAAATGATAACAAATATCAACTTTCATTT
Found at i:101227448 original size:22 final size:20
Alignment explanation
Indices: 101227405--101227472 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 20
101227395 AATACTTACA
* *
101227405 AATTTAAAACCCTAAACTCT
1 AATTTAAAACCCAAAACCCT
101227425 AATTTAAAATTCCCAAAACCCT
1 AATTTAAAA--CCCAAAACCCT
* *
101227447 AATTTCATAAACCCTAAGCCCT
1 AATTT-A-AAACCCAAAACCCT
101227469 AATT
1 AATT
101227473 AGCAATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 9 0.22
22 27 0.68
23 1 0.03
24 3 0.08
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.29
Consensus pattern (20 bp):
AATTTAAAACCCAAAACCCT
Found at i:101227816 original size:19 final size:18
Alignment explanation
Indices: 101227785--101227821 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
101227775 AAGTTGGATT
101227785 AAATAGAAAAAAAAAAAG
1 AAATAGAAAAAAAAAAAG
*
101227803 AAATAAGAACAAAAAAAAG
1 AAAT-AGAAAAAAAAAAAG
101227822 GTTAATTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.81, C:0.03, G:0.11, T:0.05
Consensus pattern (18 bp):
AAATAGAAAAAAAAAAAG
Found at i:101234747 original size:2 final size:2
Alignment explanation
Indices: 101234740--101234778 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
101234730 CCCGTACACA
* *
101234740 AT AT AT AT AT AT AT AT AT AT AT AT AT -T TT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101234779 TATTGGACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
AT
Found at i:101235779 original size:21 final size:20
Alignment explanation
Indices: 101235750--101235788 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
101235740 CTATGCTATA
*
101235750 TATTATAAAGATGATATACT
1 TATTATAAAAATGATATACT
*
101235770 TATTCATAAAAATGTTATA
1 TATT-ATAAAAATGATATA
101235789 GTCCTTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (20 bp):
TATTATAAAAATGATATACT
Found at i:101239053 original size:21 final size:22
Alignment explanation
Indices: 101239029--101239107 Score: 81
Period size: 21 Copynumber: 3.6 Consensus size: 22
101239019 ATATATATAT
**
101239029 ATATA-AATAATAGTATTATCA
1 ATATACAATAATAGTATTAGAA
*
101239050 ATATACAATATTA-TATTAGAA
1 ATATACAATAATAGTATTAGAA
*
101239071 ATATACATATAATAGTATAAGAA
1 ATATACA-ATAATAGTATTAGAA
*
101239094 ATATATAACTAATA
1 ATATACAA-TAATA
101239108 ATATATAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
21 18 0.38
22 12 0.25
23 18 0.38
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (22 bp):
ATATACAATAATAGTATTAGAA
Found at i:101239112 original size:14 final size:13
Alignment explanation
Indices: 101239093--101239131 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
101239083 TAGTATAAGA
101239093 AATATATAACTAAT
1 AATATATAA-TAAT
101239107 AATATATAATAAT
1 AATATATAATAAT
101239120 -ATATATAA-AAT
1 AATATATAATAAT
101239131 A
1 A
101239132 GAATATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.12
12 8 0.33
13 4 0.17
14 9 0.38
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
AATATATAATAAT
Found at i:101239420 original size:3 final size:3
Alignment explanation
Indices: 101239407--101239451 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
101239397 TACTACGATG
* **
101239407 ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA AGG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
101239452 TTGATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:101240784 original size:3 final size:3
Alignment explanation
Indices: 101240776--101240848 Score: 55
Period size: 3 Copynumber: 25.0 Consensus size: 3
101240766 TTCGGCAAAA
* * * *
101240776 AAG AAG AAG AAA AAG AGAG AAG AAG -GG AAG AAG -GG AAG AAG -GG
1 AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
101240819 AAG AAG -AG AAG AAG AAG AAAG AAA AAG AAG
1 AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG
101240849 GAGAGGAGGA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
2 5 0.09
3 43 0.80
4 6 0.11
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:101240807 original size:8 final size:8
Alignment explanation
Indices: 101240794--101240832 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
101240784 GAAAAAGAGA
101240794 GAAGAAGG
1 GAAGAAGG
101240802 GAAGAAGG
1 GAAGAAGG
101240810 GAAGAAGG
1 GAAGAAGG
*
101240818 GAAGAAGA
1 GAAGAAGG
101240826 GAAGAAG
1 GAAGAAG
101240833 AAGAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (8 bp):
GAAGAAGG
Found at i:101240833 original size:8 final size:8
Alignment explanation
Indices: 101240777--101240833 Score: 62
Period size: 8 Copynumber: 7.1 Consensus size: 8
101240767 TCGGCAAAAA
101240777 AGAAGAAG
1 AGAAGAAG
*
101240785 A-AAAAGAG
1 AGAAGA-AG
101240793 AGAAGAAG
1 AGAAGAAG
*
101240801 GGAAGAAG
1 AGAAGAAG
*
101240809 GGAAGAAG
1 AGAAGAAG
*
101240817 GGAAGAAG
1 AGAAGAAG
101240825 AGAAGAAG
1 AGAAGAAG
101240833 A
1 A
101240834 AGAAAGAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
7 3 0.07
8 37 0.86
9 3 0.07
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (8 bp):
AGAAGAAG
Found at i:101240846 original size:16 final size:16
Alignment explanation
Indices: 101240772--101240848 Score: 50
Period size: 19 Copynumber: 4.5 Consensus size: 16
101240762 CATTTTCGGC
101240772 AAAA-AAGAAG-AAGA
1 AAAAGAAGAAGAAAGA
*
101240786 AAAAGAGAGAAGAAGGGA
1 AAAAGA-AGAAGAA-AGA
* *
101240804 AGAAGGGAAGAAGGGAAGA
1 A-AA-AGAAGAA-GAAAGA
101240823 AGAGAAGAAGAAGAAAGA
1 A-A-AAGAAGAAGAAAGA
101240841 AAAAGAAG
1 AAAAGAAG
101240849 GAGAGGAGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 4 0.08
15 1 0.02
16 11 0.22
17 2 0.04
18 9 0.18
19 17 0.35
20 5 0.10
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (16 bp):
AAAAGAAGAAGAAAGA
Found at i:101241429 original size:30 final size:31
Alignment explanation
Indices: 101241389--101241447 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
101241379 TTTTGTTAAA
101241389 ATAATATAAAAAAATAAAATATAAAAATAGT
1 ATAATATAAAAAAATAAAATATAAAAATAGT
* *
101241420 ATAAT-TAAAAAAATAAAATCTGAAAATA
1 ATAATATAAAAAAATAAAATATAAAAATA
101241448 AAAAAATATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.25
Consensus pattern (31 bp):
ATAATATAAAAAAATAAAATATAAAAATAGT
Found at i:101241445 original size:16 final size:15
Alignment explanation
Indices: 101241391--101241456 Score: 64
Period size: 15 Copynumber: 4.3 Consensus size: 15
101241381 TTGTTAAAAT
101241391 AATATAAAAAAATAA
1 AATATAAAAAAATAA
* *
101241406 AATATAAAAATAGTAT
1 AATATAAAAA-AATAA
101241422 AAT-TAAAAAAATAA
1 AATATAAAAAAATAA
*
101241436 AATCTGAAAATAAA-AA
1 AATAT-AAAA-AAATAA
101241452 AATAT
1 AATAT
101241457 GAACAAGGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
14 6 0.14
15 17 0.40
16 16 0.38
17 3 0.07
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (15 bp):
AATATAAAAAAATAA
Done.