Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 353 of 427
Found at i:102743661 original size:26 final size:26
Alignment explanation
Indices: 102743632--102743741 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
102743622 TGATACAAAT
102743632 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102743658 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102743684 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102743710 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102743736 TGATAA
1 TGATAA
102743742 GAATTCATGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102749468 original size:26 final size:25
Alignment explanation
Indices: 102749425--102749532 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 25
102749415 TGATACAAAT
102749425 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
102749450 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
102749476 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
102749502 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
102749527 TGATAA
1 TGATAA
102749533 GAATTTCATG
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
25 33 0.42
26 43 0.55
27 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:102752903 original size:96 final size:95
Alignment explanation
Indices: 102752788--102752976 Score: 279
Period size: 96 Copynumber: 2.0 Consensus size: 95
102752778 AAGACACTTA
* *
102752788 TCAATTTATATCATGCTTATTTCTATTTTATTCATTTCAATCCAATTCTCAACATTTAATATCAA
1 TCAATTTATATCATGCTTATTTATATTTTATTCATTTCAATCCAATTCTCAACATTCAATATCAA
*
102752853 CAATCATGAATCAAGTCATGAGACATTTTT
66 CAATCACGAATCAAGTCATGAGACATTTTT
* * * *
102752883 TCAATTTGTTATCATGCTTATTTATATTTTATTCATTTCAGTCCAATTCTCGATATTCAATATCA
1 TCAATTT-ATATCATGCTTATTTATATTTTATTCATTTCAATCCAATTCTCAACATTCAATATCA
* * *
102752948 ACAATCGCGAATCAAGTTATGAGATATTT
65 ACAATCACGAATCAAGTCATGAGACATTT
102752977 AATCATCTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 7 0.08
96 76 0.92
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.43
Consensus pattern (95 bp):
TCAATTTATATCATGCTTATTTATATTTTATTCATTTCAATCCAATTCTCAACATTCAATATCAA
CAATCACGAATCAAGTCATGAGACATTTTT
Found at i:102753783 original size:21 final size:20
Alignment explanation
Indices: 102753758--102753796 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
102753748 GAGTATTTTG
102753758 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
102753779 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
102753797 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:102754470 original size:48 final size:48
Alignment explanation
Indices: 102754347--102754529 Score: 215
Period size: 48 Copynumber: 3.7 Consensus size: 48
102754337 ATTAGGGATA
* * *
102754347 TATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCGA-GATATAT
1 TATTGAGTTGGCTACGGGCCATGATATTGGCACTTCGGGTGC-ATG--AT-T
* * * *
102754398 ATATTGAGTTAGCTATGGGCCATGATATTTGCACTTTGGGTGCATGATT
1 -TATTGAGTTGGCTACGGGCCATGATATTGGCACTTCGGGTGCATGATT
* *
102754447 TATTGAGTTGGCTACGGGCCATGATATTTGCACTTCGAGTGCATGATT
1 TATTGAGTTGGCTACGGGCCATGATATTGGCACTTCGGGTGCATGATT
* *
102754495 TATTGAGTTGGCTTCGGGCTATGATATTGGCACTT
1 TATTGAGTTGGCTACGGGCCATGATATTGGCACTT
102754530 AAGGTGGAAA
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
48 76 0.66
49 1 0.01
50 2 0.02
51 1 0.01
52 36 0.31
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (48 bp):
TATTGAGTTGGCTACGGGCCATGATATTGGCACTTCGGGTGCATGATT
Found at i:102756547 original size:11 final size:11
Alignment explanation
Indices: 102756531--102756563 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
102756521 CTCAACAACA
102756531 TTTTTCTTTTC
1 TTTTTCTTTTC
*
102756542 TTTTTCTCTTC
1 TTTTTCTTTTC
102756553 TTTTTCTTTTC
1 TTTTTCTTTTC
102756564 AATTTTGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:102771604 original size:50 final size:49
Alignment explanation
Indices: 102771502--102771604 Score: 134
Period size: 50 Copynumber: 2.1 Consensus size: 49
102771492 AATCTTTTTA
* ** *
102771502 TTTATTATTTATTTCATAATTAATTATATTAATTAAAGATAGTATAATT
1 TTTATTATTTATTTCATAATTAATTAAATTAATTAAAGATAAAATAACT
* * *
102771551 TTTATTATTTATTTCCTGATTAATTTAAATTAATTAGAGATAAAATAACT
1 TTTATTATTTATTTCATAATTAA-TTAAATTAATTAAAGATAAAATAACT
102771601 TTTA
1 TTTA
102771605 AAAAAATATG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
49 21 0.46
50 25 0.54
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (49 bp):
TTTATTATTTATTTCATAATTAATTAAATTAATTAAAGATAAAATAACT
Found at i:102774170 original size:2 final size:2
Alignment explanation
Indices: 102774155--102774211 Score: 68
Period size: 2 Copynumber: 29.5 Consensus size: 2
102774145 TTTTAAAATT
102774155 TA TA -A TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102774194 TA TGA TA TGA TA TA -A TA T
1 TA T-A TA T-A TA TA TA TA T
102774212 GAAAGAGCAA
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
1 4 0.08
2 41 0.84
3 4 0.08
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:102776490 original size:17 final size:17
Alignment explanation
Indices: 102776455--102776492 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
102776445 AGATAAAAAG
*
102776455 TAAATTATTTATGAGAA
1 TAAATTATTTATGACAA
102776472 TAAATTATTT-TGAACAA
1 TAAATTATTTATG-ACAA
102776489 TAAA
1 TAAA
102776493 AATTGGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (17 bp):
TAAATTATTTATGACAA
Found at i:102778075 original size:3 final size:3
Alignment explanation
Indices: 102778067--102778096 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
102778057 TTTTGATGCA
102778067 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102778097 TATTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:102788015 original size:2 final size:2
Alignment explanation
Indices: 102788008--102788033 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
102787998 AAAATAAATA
102788008 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
102788034 GAACGTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102788152 original size:22 final size:24
Alignment explanation
Indices: 102788122--102788170 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
102788112 AATCTAAAAT
*
102788122 AATGTATAATA-AAA-CAATTTGA
1 AATGAATAATATAAATCAATTTGA
*
102788144 AATGAATAATATAAATCAATTTTA
1 AATGAATAATATAAATCAATTTGA
102788168 AAT
1 AAT
102788171 AAATGACACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 10 0.43
23 3 0.13
24 10 0.43
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (24 bp):
AATGAATAATATAAATCAATTTGA
Found at i:102789074 original size:18 final size:17
Alignment explanation
Indices: 102789051--102789086 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
102789041 AAACTTAAAA
*
102789051 ATTTCATTTTTTTATTTT
1 ATTTCATTATTTT-TTTT
102789069 ATTTCATTATTTTTTTT
1 ATTTCATTATTTTTTTT
102789086 A
1 A
102789087 AAAAAATCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTCATTATTTTTTTT
Found at i:102790777 original size:17 final size:18
Alignment explanation
Indices: 102790755--102790788 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102790745 CAATTCAAGG
102790755 TCAATTT-CACAATTTTA
1 TCAATTTACACAATTTTA
*
102790772 TCAATTTACACCATTTT
1 TCAATTTACACAATTTT
102790789 TAATTTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (18 bp):
TCAATTTACACAATTTTA
Found at i:102791748 original size:66 final size:66
Alignment explanation
Indices: 102791642--102791768 Score: 220
Period size: 66 Copynumber: 1.9 Consensus size: 66
102791632 CAATTTAGCA
102791642 GATCCCTAGCAGTTAAATTAGAGTCAGCCCTGTATGCATAATACACCAGACCTGGCTTAGTCAGT
1 GATCCCTAGCAGTTAAATTAGAGTCAGCCCTGTATGCATAATACACCAGACCTGGCTTAGTCAGT
102791707 C
66 C
* *
102791708 GATCCCT-GACAGTTAAATTAGAGTTAGCCCTGTATGCATAATACACTAGACCTGGCTTAGT
1 GATCCCTAG-CAGTTAAATTAGAGTCAGCCCTGTATGCATAATACACCAGACCTGGCTTAGT
102791769 ATCTTAGGTA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 1 0.02
66 57 0.98
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (66 bp):
GATCCCTAGCAGTTAAATTAGAGTCAGCCCTGTATGCATAATACACCAGACCTGGCTTAGTCAGT
C
Found at i:102794502 original size:25 final size:23
Alignment explanation
Indices: 102794474--102794520 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
102794464 TTTCCCAATT
*
102794474 TAATTTTATTTCCAATTTATTTAAA
1 TAATGTTATTT-CAA-TTATTTAAA
*
102794499 TAATGTTGTTTCAATTATTTAA
1 TAATGTTATTTCAATTATTTAA
102794521 TTTCTAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 3 0.15
25 9 0.45
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TAATGTTATTTCAATTATTTAAA
Found at i:102795753 original size:38 final size:37
Alignment explanation
Indices: 102795711--102795832 Score: 115
Period size: 38 Copynumber: 3.2 Consensus size: 37
102795701 ACACCCAATG
* *
102795711 CCTCATCAGAACATCTGAAGTATAATTTGTGCTTCACA
1 CCTCATCGGAACATCTGAAGT-TAATATGTGCTTCACA
* *
102795749 CCTCATCGGTATAAATC-GAAG-TAATATGTG-TTACGCA
1 CCTCATCGG-A-ACATCTGAAGTTAATATGTGCTT-CACA
* * *
102795786 CCTCATTGGAACATCTGAAGTGTAATATGTGCTCCACG
1 CCTCATCGGAACATCTGAAGT-TAATATGTGCTTCACA
102795824 CCTCATCGG
1 CCTCATCGG
102795833 CATAAACCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
35 4 0.06
36 7 0.10
37 19 0.28
38 27 0.40
39 6 0.09
40 4 0.06
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (37 bp):
CCTCATCGGAACATCTGAAGTTAATATGTGCTTCACA
Found at i:102795770 original size:39 final size:38
Alignment explanation
Indices: 102795727--102795850 Score: 103
Period size: 37 Copynumber: 3.3 Consensus size: 38
102795717 CAGAACATCT
*
102795727 GAAGTATAATTTGTGCTTCACACCTCATCGGTATAAATC
1 GAAGTATAATATGTGCTTCACACCTCATCGG-ATAAATC
* * *
102795766 GAAG--TAATATGTG-TTACGCACCTCATTGGA-ACATC
1 GAAGTATAATATGTGCTT-CACACCTCATCGGATAAATC
* * * *
102795801 TGAAGTGTAATATGTGCTCCACGCCTCATCGGCATAAACC
1 -GAAGTATAATATGTGCTTCACACCTCATCGG-ATAAATC
*
102795841 AAAGTATAAT
1 GAAGTATAAT
102795851 CCTATATATA
Statistics
Matches: 66, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
35 4 0.06
36 7 0.11
37 19 0.29
38 19 0.29
39 14 0.21
40 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (38 bp):
GAAGTATAATATGTGCTTCACACCTCATCGGATAAATC
Found at i:102800310 original size:11 final size:11
Alignment explanation
Indices: 102800294--102800319 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
102800284 TATTTTTAAA
102800294 CCCCCTCCCCT
1 CCCCCTCCCCT
102800305 CCCCCTCCCCT
1 CCCCCTCCCCT
102800316 CCCC
1 CCCC
102800320 TTCGCTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.85, G:0.00, T:0.15
Consensus pattern (11 bp):
CCCCCTCCCCT
Found at i:102801579 original size:17 final size:18
Alignment explanation
Indices: 102801552--102801590 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
102801542 ATTTACTTAT
102801552 TATATAAGTAAATAATAA
1 TATATAAGTAAATAATAA
*
102801570 TATA-AAGTAAATTATAA
1 TATATAAGTAAATAATAA
102801587 TATA
1 TATA
102801591 GTATATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
TATATAAGTAAATAATAA
Found at i:102801598 original size:15 final size:15
Alignment explanation
Indices: 102801548--102801600 Score: 52
Period size: 17 Copynumber: 3.3 Consensus size: 15
102801538 ATGTATTTAC
*
102801548 TTATTATATAAGTAAA
1 TTATAATAT-AGTAAA
*
102801564 TAATAATATAAAGTAAA
1 TTATAATAT--AGTAAA
*
102801581 TTATAATATAGTATA
1 TTATAATATAGTAAA
102801596 TTATA
1 TTATA
102801601 TAATTATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 10 0.31
16 7 0.22
17 15 0.47
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (15 bp):
TTATAATATAGTAAA
Found at i:102809392 original size:32 final size:32
Alignment explanation
Indices: 102809352--102809423 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
102809342 TAAGCCCCCC
*
102809352 AAAAAAACCAAACCCAAGAAAA-AAAAAGAAA
1 AAAAAAACCAAACCCAAAAAAACAAAAAGAAA
* *
102809383 AAGAAAAACCTACCCCAAAAAAACCTAAAAAGAAA
1 AA-AAAAACCAAACCCAAAAAAA-C-AAAAAGAAA
102809418 AAAAAA
1 AAAAAA
102809424 GAAAAAAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 2 0.06
32 17 0.50
34 4 0.12
35 11 0.32
ACGTcount: A:0.74, C:0.18, G:0.06, T:0.03
Consensus pattern (32 bp):
AAAAAAACCAAACCCAAAAAAACAAAAAGAAA
Found at i:102809422 original size:46 final size:46
Alignment explanation
Indices: 102809348--102809440 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 46
102809338 CCATTAAGCC
102809348 CCCCAAAAAAACCAAACCCAAGAAAAAAAAAG-AAAAAGAAAAACCTA
1 CCCCAAAAAAACCAAA--CAAGAAAAAAAAAGAAAAAAGAAAAACCTA
102809395 CCCCAAAAAAACCTAAA-AAGAAAAAAAAAGAAAAAAGAAAAACCTA
1 CCCCAAAAAAACC-AAACAAGAAAAAAAAAGAAAAAAGAAAAACCTA
102809441 ACAAAAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
45 13 0.30
46 15 0.34
47 13 0.30
48 3 0.07
ACGTcount: A:0.70, C:0.20, G:0.06, T:0.03
Consensus pattern (46 bp):
CCCCAAAAAAACCAAACAAGAAAAAAAAAGAAAAAAGAAAAACCTA
Found at i:102809458 original size:46 final size:45
Alignment explanation
Indices: 102809367--102809459 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 45
102809357 AACCAAACCC
* ** *
102809367 AAGAAAAAAAAAGAAAAAGAAAAACCTACCCCAAAAAAACCTAAA
1 AAGAAAAAAAAAGAAAAAGAAAAACCTAACAAAAAAAAACATAAA
*
102809412 AAGAAAAAAAAAGAAAAAAGAAAAACCTAACAAAAAAAAAGATAAA
1 AAGAAAAAAAAAG-AAAAAGAAAAACCTAACAAAAAAAAACATAAA
102809458 AA
1 AA
102809460 AACCTAGCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 13 0.31
46 29 0.69
ACGTcount: A:0.76, C:0.12, G:0.08, T:0.04
Consensus pattern (45 bp):
AAGAAAAAAAAAGAAAAAGAAAAACCTAACAAAAAAAAACATAAA
Found at i:102809461 original size:31 final size:31
Alignment explanation
Indices: 102809401--102809460 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
102809391 CCTACCCCAA
102809401 AAAAACCTAAAAAGAAAAAAAAAGAAAAAAG
1 AAAAACCTAAAAAGAAAAAAAAAGAAAAAAG
* * *
102809432 AAAAACCTAACAA-AAAAAAAGATAAAAAA
1 AAAAACCTAAAAAGAAAAAAAAAGAAAAAA
102809461 ACCTAGCCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.80, C:0.08, G:0.07, T:0.05
Consensus pattern (31 bp):
AAAAACCTAAAAAGAAAAAAAAAGAAAAAAG
Found at i:102810126 original size:2 final size:2
Alignment explanation
Indices: 102810114--102810155 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
102810104 TTTTATGTAC
* *
102810114 AT AT GT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102810156 TTGTACATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102810207 original size:15 final size:15
Alignment explanation
Indices: 102810187--102810216 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
102810177 ATTATTGTTG
102810187 TATATTTTTTATGTA
1 TATATTTTTTATGTA
102810202 TATATTTTTTATGTA
1 TATATTTTTTATGTA
102810217 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:102810275 original size:37 final size:37
Alignment explanation
Indices: 102810233--102810332 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 37
102810223 CTAATATTTT
102810233 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
102810270 CTTTTATTATATGCATA-TATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATATTAT-TAT-TATTATTATGTACATA
*
102810311 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
102810333 CCAAATATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 16 0.30
38 7 0.13
39 6 0.11
40 11 0.21
41 11 0.21
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:102811995 original size:12 final size:12
Alignment explanation
Indices: 102811978--102812013 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
102811968 ATTCATTTGA
102811978 CATTCATGCATT
1 CATTCATGCATT
102811990 CATTCATGCATT
1 CATTCATGCATT
*
102812002 CATTCATACATT
1 CATTCATGCATT
102812014 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:102817228 original size:71 final size:69
Alignment explanation
Indices: 102817130--102817304 Score: 235
Period size: 71 Copynumber: 2.5 Consensus size: 69
102817120 TTTTCAAGGG
* *
102817130 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
102817194 GTTTT
65 GTTTT
* * *
102817199 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
102817264 TGTTTT
64 TGTTTT
** * *
102817270 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
102817305 TTTAATTTTT
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
69 31 0.33
71 61 0.65
72 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:102817468 original size:71 final size:71
Alignment explanation
Indices: 102817304--102817468 Score: 219
Period size: 71 Copynumber: 2.3 Consensus size: 71
102817294 GAGTTAAGCC
* * ** *
102817304 TTTT-AATTTTTTTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCT
1 TTTTCAATTTTATGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCT
102817368 GAGGTA
66 GAGGTA
* *
102817374 TTTTCAATTTTTATGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATG
1 TTTTCAA-TTTTATGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACG
102817438 CTGAGGTA
64 CTGAGGTA
*
102817446 TTTTCAA-TTTCTGTTTTCAATTT
1 TTTTCAATTTTATGTTTTCAATTT
102817469 ACGTTGTTCA
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
70 13 0.16
71 41 0.49
72 29 0.35
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (71 bp):
TTTTCAATTTTATGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCT
GAGGTA
Found at i:102817653 original size:140 final size:140
Alignment explanation
Indices: 102817401--102817875 Score: 887
Period size: 140 Copynumber: 3.4 Consensus size: 140
102817391 TTAATTTCAA
*
102817401 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
102817466 TTTACGTTGTTCAAGAATCAATTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
102817531 TCAAAATCAG
131 TCAAAATCAG
* *
102817541 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
102817606 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
102817671 TCAAAATCAG
131 TCAAAATCAG
102817681 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
102817746 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
102817811 TCAAAATCAG
131 TCAAAATCAG
* *
102817821 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
102817876 TTCGTATGTT
Statistics
Matches: 325, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 325 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:102817923 original size:76 final size:76
Alignment explanation
Indices: 102817809--102817953 Score: 193
Period size: 76 Copynumber: 1.9 Consensus size: 76
102817799 ATTTCTACTT
* * * *
102817809 TTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTGTCAA
1 TTTCAAAATCAACTCATATTGCGAGAGGCGAGTCGAGCCTCAGGCACACGCCGAGGTATTGTCAA
102817873 TTTTTCGTATG
66 TTTTTCGTATG
* * * *
102817884 TTTCAAAAATCAACTCGTATTGGGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 TTTC-AAAATCAACTCATATTGCGAGAGGCGAGTCGAGCCTCAGG-CACACGCCGAGGTATTGTC
102817949 AATTT
64 AATTT
102817954 CTGTTTTTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
75 4 0.07
76 34 0.58
78 21 0.36
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (76 bp):
TTTCAAAATCAACTCATATTGCGAGAGGCGAGTCGAGCCTCAGGCACACGCCGAGGTATTGTCAA
TTTTTCGTATG
Found at i:102817963 original size:14 final size:14
Alignment explanation
Indices: 102817944--102817978 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
102817934 CGCCGAGGTA
102817944 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
102817958 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
102817972 CTTTCAA
1 TTTTCAA
102817979 AAAAATCGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:102818131 original size:14 final size:14
Alignment explanation
Indices: 102818112--102818138 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102818102 CGCCGAGGTA
102818112 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
102818126 TTTTCAATTTCTG
1 TTTTCAATTTCTG
102818139 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:102818144 original size:14 final size:14
Alignment explanation
Indices: 102818113--102818146 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102818103 GCCGAGGTAT
**
102818113 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
102818127 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
102818141 TTTCAA
1 TTTCAA
102818147 AAAAATCGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:102818298 original size:14 final size:14
Alignment explanation
Indices: 102818279--102818305 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102818269 CGCTGAGGTA
102818279 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
102818293 TTTTCAATTTCTG
1 TTTTCAATTTCTG
102818306 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:102818306 original size:167 final size:167
Alignment explanation
Indices: 102817813--102818639 Score: 1189
Period size: 167 Copynumber: 4.9 Consensus size: 167
102817803 CTACTTTTTC
102817813 AAAATC-AGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
1 AAAATCGA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTT
* *** *
102817876 TTCGTATGT--TTCAAAAATCAACTCGTATTGGGAGCGGCGAGTCGAGCCTCAGGTCACACGCCG
64 CT-GT-TGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCG
*
102817939 AGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAA
127 AGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
*
102817980 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
102818045 ATTGTCAAAAAAAAAATCAACTCGTATTGCGAGCAGCGAGTCGAGCCTCAGGTCACACGCCGAGG
66 GTTGTC-AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGG
102818110 TATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
130 TATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
*
102818148 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
102818213 GTTGTCAAAAAAAAATCAACTCGTATTGTGAGCGGCGAGTCGAGCCTCAGGTCACACGCTGAGGT
66 GTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGT
102818278 ATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
131 ATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
* * *
102818315 AAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTCT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
102818380 ATTGTC-AAAAAAAATCAACTCGTATTGTGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGT
66 GTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGT
*
102818444 ATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
131 ATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
* * * * *
102818481 AAAATCGACTCATATTGCGATAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
* * * * * * * *
102818545 TCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
63 TCTGT-TGTC--AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGC
* * *
102818610 TGAGGTATTTTTTCAATTTATATTTTTCAA
125 CGAGGTA--TTTTCAATTTCTGTTTTTCAA
102818640 AAAAATCAAC
Statistics
Matches: 602, Mismatches: 44, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
165 4 0.01
166 128 0.21
167 216 0.36
168 183 0.30
169 3 0.00
172 50 0.08
174 18 0.03
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (167 bp):
AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGT
ATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAA
Found at i:102818311 original size:14 final size:14
Alignment explanation
Indices: 102818280--102818313 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102818270 GCTGAGGTAT
**
102818280 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
102818294 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
102818308 TTTCAA
1 TTTCAA
102818314 AAAAATCGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:102818424 original size:75 final size:76
Alignment explanation
Indices: 102818312--102818455 Score: 191
Period size: 75 Copynumber: 1.9 Consensus size: 76
102818302 TCTGCCTTTC
* * *
102818312 AAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCAAG-ACACGCCGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTACGAGAGGCGAGTCGAGCCTCAAGCACACGCCGAGGTAATTTCAAT
102818376 TTCTATTGTCA
66 TTCTATTGTCA
* ** * * *
102818387 AAAAAAATCAACTCGTATTGTGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTACGAGAGGCGAGTCGAGCCTCAAG-CACACGCCGAGGTAATTTCAA
102818452 TTTC
65 TTTC
102818456 CGTTTTTCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
75 35 0.60
77 23 0.40
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTACGAGAGGCGAGTCGAGCCTCAAGCACACGCCGAGGTAATTTCAAT
TTCTATTGTCA
Found at i:102818543 original size:335 final size:336
Alignment explanation
Indices: 102817813--102818639 Score: 1222
Period size: 335 Copynumber: 2.5 Consensus size: 336
102817803 CTACTTTTTC
*
102817813 AAAATC-AGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
1 AAAATCGA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATT-TCAATTT
* * *** * *
102817876 TTCGTATGT---TTCAAAAATCAACTCGTATTGGGAGCGGCGAGTCGAGCCTCAGGTCACACGCC
64 CT-GTCTGTCAAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCT
* *
102817938 GAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAATCGACTCATATTGCGAGAG
128 GAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAG
*
102818003 GTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTGTCAAAAAAAAAATCAACTC
193 GTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTCTATTGTC-AAAAAAAAATCAACTC
*
102818068 GTATTGCGAGCAGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAA
257 GTATTGCGAGCAGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
102818133 TTTCTGCCTTTCAAA
322 TTTCTGCCTTTCAAA
* *
102818148 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTCT
*
102818213 GT-TGTC-AAAAAAAAATCAACTCGTATTGTGAGCGGCGAGTCGAGCCTCAGGTCACACGCTGAG
66 GTCTGTCAAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCTGAG
102818276 GTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAGGTG
131 GTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAGGTG
102818341 AGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTCTATTGTC-AAAAAAAATCAACTCGTAT
196 AGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTCTATTGTCAAAAAAAAATCAACTCGTAT
* *
102818405 TGTGAGCGGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTC
261 TGCGAGCAGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTC
102818470 TGCCTTTCAAA
326 TGCCTTTCAAA
* * * *
102818481 AAAATCGACTCATATTGCGATAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCAATT
* * * * * * * *
102818545 TCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
63 TCTGTCTGTC-AAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGC
* *
102818610 TGAGGTATTTTTTCAATTTATATTTTTCAA
127 TGAGGTA--TTTTCAATTTCTGTTTTTCAA
102818640 AAAAATCAAC
Statistics
Matches: 450, Mismatches: 30, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
332 2 0.00
333 130 0.29
334 2 0.00
335 238 0.53
336 7 0.02
338 52 0.12
340 19 0.04
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (336 bp):
AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTCT
GTCTGTCAAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTCGAGCCTCAGGTCACACGCTGAG
GTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAGGTG
AGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTCTATTGTCAAAAAAAAATCAACTCGTAT
TGCGAGCAGCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTC
TGCCTTTCAAA
Found at i:102818590 original size:81 final size:77
Alignment explanation
Indices: 102818459--102818797 Score: 272
Period size: 88 Copynumber: 4.2 Consensus size: 77
102818449 CAATTTCCGT
* * *
102818459 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTGCGATAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
*
102818524 CGCGCTGAGCTA
66 CACGCTGAGCTA
*
102818536 TTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCA
1 TTTTCAATTTCTGTCTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-G
* * *
102818600 GATCACACACTGAGGTA
61 GCTCACACGCTGAGCTA
* * * * * * *
102818617 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACAGTGCGAGATGTGAGTTGAGCCTCAGG-
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
* *
102818681 TCACATG-TCGAGGTA
63 TCACACGCT-GAGCTA
** *
102818696 TTTTCAAAATCTGT-TTTACAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTG
1 TTTTCAATTTCTGTCTTT-C-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
102818760 AGCCTTGGCTCACGCGCTGAGCTA
54 AGCCTTGGCTCACACGCTGAGCTA
102818784 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
102818798 TTTTAATGTC
Statistics
Matches: 207, Mismatches: 31, Indels: 37
0.75 0.11 0.13
Matches are distributed among these distances:
76 3 0.01
77 29 0.14
78 3 0.01
79 44 0.21
80 6 0.03
81 47 0.23
83 16 0.08
87 2 0.01
88 56 0.27
89 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGCTA
Found at i:102818682 original size:251 final size:240
Alignment explanation
Indices: 102818293--102818797 Score: 636
Period size: 251 Copynumber: 2.1 Consensus size: 240
102818283 CAATTTCTGT
* *
102818293 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACA
* * ** * * *
102818358 CGCCGAGGTAATTTCAATTTCTATTGTCAAAAAAAATCAACTCGTATTGTGAGCGGCGAGTCGAG
66 CACCGAGGTAATTTCAATTTATATTGTCAAAAAAAATCAACTCACAGTGCGAGAGGCGAGTCGAG
** * * *
102818423 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCG
131 CCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGTTTTACAAATTCTG-CTTTC--AAAAATCA
* *
102818488 ACTCATATTGCGATAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
193 ACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
* *
102818536 TTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-A
1 TTTTCAATTTCTGTCTTTC----AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAA
* * *
102818600 GATCACACACTGAGGTATTTTTTCAATTTATATTTTTC-AAAAAAATCAACTCACAGTGCGAGAT
62 GA-CACAC-C-GAGGTA--ATTTCAATTTATA-TTGTCAAAAAAAATCAACTCACAGTGCGAGAG
* * * * * *
102818664 GTGAGTTGAGCCTCAGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTACAAATTCTGTTTTCA
121 GCGAGTCGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGTTTTACAAATTCTGCTTTCA
102818729 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
186 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
102818784 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
102818798 TTTTAATGTC
Statistics
Matches: 225, Mismatches: 27, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
243 18 0.08
246 3 0.01
247 41 0.18
248 68 0.30
249 6 0.03
250 4 0.02
251 81 0.36
252 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (240 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACA
CACCGAGGTAATTTCAATTTATATTGTCAAAAAAAATCAACTCACAGTGCGAGAGGCGAGTCGAG
CCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGTTTTACAAATTCTGCTTTCAAAAATCAACT
CATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
Found at i:102818722 original size:14 final size:13
Alignment explanation
Indices: 102818696--102818731 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
102818686 TGTCGAGGTA
102818696 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
102818709 TTTTACAAATTCTG
1 TTTT-CAAAATCTG
102818723 TTTTCAAAA
1 TTTTCAAAA
102818732 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:102819505 original size:47 final size:48
Alignment explanation
Indices: 102819459--102819547 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
102819449 AGCCCCCCAA
*
102819459 AAAAAAAACCCAAGAA-AAAAAAA-AAG-AAAAAGAAAAACCTACCCC
1 AAAAAAAACCCAAAAAGAAAAAAAGAAGAAAAAAGAAAAACCTACCCC
*
102819504 AAAAAAAACCTAAAAAGAAAAAAAGAAGAAAAAAGAAAAACCTA
1 AAAAAAAACCCAAAAAGAAAAAAAGAAGAAAAAAGAAAAACCTA
102819548 ACAAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
45 14 0.36
46 7 0.18
47 3 0.08
48 15 0.38
ACGTcount: A:0.74, C:0.15, G:0.08, T:0.03
Consensus pattern (48 bp):
AAAAAAAACCCAAAAAGAAAAAAAGAAGAAAAAAGAAAAACCTACCCC
Found at i:102819556 original size:48 final size:45
Alignment explanation
Indices: 102819456--102819557 Score: 132
Period size: 48 Copynumber: 2.2 Consensus size: 45
102819446 TTAAGCCCCC
* *
102819456 CAAAAAAAAAACCCAAGAAAAAAAAAAAGAAAAAGAAAAACCTAC
1 CAAAAAAAAAACCCAAAAAAAAAAAAAAGAAAAAGAAAAACCTAA
** *
102819501 CCCAAAAAAAACCTAAAAAGAAAAAAAGAAGAAAAAAGAAAAACCTAA
1 CAAAAAAAAAACCCAAAAA-AAAAAAA-AAG-AAAAAGAAAAACCTAA
102819549 CAAAAAAAA
1 CAAAAAAAA
102819558 GATAAAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
45 15 0.32
46 7 0.15
47 3 0.06
48 22 0.47
ACGTcount: A:0.75, C:0.15, G:0.07, T:0.03
Consensus pattern (45 bp):
CAAAAAAAAAACCCAAAAAAAAAAAAAAGAAAAAGAAAAACCTAA
Found at i:102819557 original size:30 final size:32
Alignment explanation
Indices: 102819507--102819567 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
102819497 CTACCCCAAA
102819507 AAAAACCTAAAAAGAAAAAAAGA-AGAAAAAAG
1 AAAAACCTAAAAAGAAAAAAAGATA-AAAAAAG
*
102819539 AAAAACCT-AACA-AAAAAAAGATAAAAAAA
1 AAAAACCTAAAAAGAAAAAAAGATAAAAAAA
102819568 CCTAGCCACC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 15 0.56
31 4 0.15
32 8 0.30
ACGTcount: A:0.79, C:0.08, G:0.08, T:0.05
Consensus pattern (32 bp):
AAAAACCTAAAAAGAAAAAAAGATAAAAAAAG
Found at i:102819567 original size:48 final size:46
Alignment explanation
Indices: 102819474--102819565 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 46
102819464 AAACCCAAGA
* *
102819474 AAAAAAAAAAGAAAAAGAAAAACCTACCCCAAAAAAAACCTAAAAAG
1 AAAAAAAAAAGAAAAAGAAAAACCTA-CACAAAAAAAACATAAAAAG
* *
102819521 AAAAAAAGAAGAAAAAAGAAAAACCTA-ACAAAAAAAAGATAAAAA
1 AAAAAAAAAAG-AAAAAGAAAAACCTACACAAAAAAAACATAAAAA
102819566 AACCTAGCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
46 15 0.38
47 10 0.25
48 15 0.38
ACGTcount: A:0.76, C:0.12, G:0.08, T:0.04
Consensus pattern (46 bp):
AAAAAAAAAAGAAAAAGAAAAACCTACACAAAAAAAACATAAAAAG
Found at i:102820094 original size:39 final size:39
Alignment explanation
Indices: 102820022--102820096 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
102820012 TTTATATATA
* * *
102820022 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
*
102820061 TTATGTATATATTCTTAAATACTATTA-TATATATAT
1 TTATGTATATATTCTTAAATACCATTAGT-TATATAT
102820097 ATATATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:102820287 original size:13 final size:13
Alignment explanation
Indices: 102820271--102820295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102820261 ATTATTGTTG
102820271 TATATTTTTTATA
1 TATATTTTTTATA
102820284 TATATTTTTTAT
1 TATATTTTTTAT
102820296 GTATGTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATATTTTTTATA
Found at i:102823909 original size:21 final size:22
Alignment explanation
Indices: 102823885--102823933 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
102823875 ATTCCTTCCA
*
102823885 CCCTTTCATCT-CTTTTT-CTTT
1 CCCTTTC-TCTACTTTTTCCCTT
102823906 CCCTTTCTCTACTTTTTCCCTT
1 CCCTTTCTCTACTTTTTCCCTT
102823928 CCCTTT
1 CCCTTT
102823934 TTCTTTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 13 0.52
22 9 0.36
ACGTcount: A:0.04, C:0.39, G:0.00, T:0.57
Consensus pattern (22 bp):
CCCTTTCTCTACTTTTTCCCTT
Found at i:102825413 original size:18 final size:19
Alignment explanation
Indices: 102825390--102825426 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
102825380 TTCAACCATT
102825390 CCATTTCC-ATTTTAATTA
1 CCATTTCCGATTTTAATTA
*
102825408 CCATTTCCGTTTTTAATTA
1 CCATTTCCGATTTTAATTA
102825427 ACACCCAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.22, G:0.03, T:0.51
Consensus pattern (19 bp):
CCATTTCCGATTTTAATTA
Found at i:102833852 original size:26 final size:24
Alignment explanation
Indices: 102833812--102833871 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
102833802 TTATTTTATT
* * *
102833812 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
102833836 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
102833862 AAATAAATAT
1 AAATAAATAT
102833872 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:102833883 original size:22 final size:22
Alignment explanation
Indices: 102833842--102833900 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
102833832 ATAATAAATC
* *
102833842 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
102833862 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
102833884 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
102833901 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:102841461 original size:54 final size:53
Alignment explanation
Indices: 102841405--102841594 Score: 210
Period size: 54 Copynumber: 3.6 Consensus size: 53
102841395 CCATGGCAAC
*
102841405 AAGTGATAAGTGATATCCGTATAAGACCATAACTGGGCTATGGCATTGGAAAA
1 AAGTGATAAGTGATATCCGTATAAGACCATAGCTGGGCTATGGCATTGGAAAA
* * *
102841458 CAAGTGATAAGTGATTTCCATATAAGACCATAGCTGGGCTATGGC-TTCGGATTAA
1 -AAGTGATAAGTGATATCCGTATAAGACCATAGCTGGGCTATGGCATT-GGA-AAA
* * *
102841513 AA-TGATACAAGTG--ATCCGTATAAGACCATAGCTGGGTTATGGCATCGGAGAA
1 AAGTGAT--AAGTGATATCCGTATAAGACCATAGCTGGGCTATGGCATTGGAAAA
* * *
102841565 AAGTGATAAGTGCT-CCCGTGTAAGACCATA
1 AAGTGATAAGTGATATCCGTATAAGACCATA
102841595 TTCGGGATAT
Statistics
Matches: 117, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
51 5 0.04
52 18 0.15
53 40 0.34
54 47 0.40
55 7 0.06
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (53 bp):
AAGTGATAAGTGATATCCGTATAAGACCATAGCTGGGCTATGGCATTGGAAAA
Found at i:102849183 original size:52 final size:52
Alignment explanation
Indices: 102849101--102849202 Score: 134
Period size: 52 Copynumber: 1.9 Consensus size: 52
102849091 TAGGCGGATT
*
102849101 AAAGTGATACAAGTGATCCGTATAAGACCATAGCTAGGCTATGGCATCGGAGA
1 AAAGTGATA-AAGTGATCCGTATAAGACCATAGCTAGGATATGGCATCGGAGA
* * * *
102849154 AAAGTGAT-AAGTGCTCCCGTGTAAGACCATATCTGGGATATGGCATCGG
1 AAAGTGATAAAGTGAT-CCGTATAAGACCATAGCTAGGATATGGCATCGG
102849203 TATGATATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 6 0.14
52 29 0.67
53 8 0.19
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (52 bp):
AAAGTGATAAAGTGATCCGTATAAGACCATAGCTAGGATATGGCATCGGAGA
Found at i:102856746 original size:15 final size:15
Alignment explanation
Indices: 102856726--102856779 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
102856716 ATATTACAAA
102856726 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
102856741 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
102856758 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
102856775 ATATT
1 ATATT
102856780 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:102856887 original size:16 final size:16
Alignment explanation
Indices: 102856821--102856918 Score: 54
Period size: 17 Copynumber: 5.6 Consensus size: 16
102856811 ATATTATTTA
102856821 AATTTATTATTTTTAA-
1 AATTTATTA-TTTTAAT
**
102856837 AATTTATTATTAAAAT
1 AATTTATTATTTTAAT
* ** *
102856853 AAAATTAAAATATTAAAT
1 -AATTTATTAT-TTTAAT
102856871 AATTTATTATTTTAAT
1 AATTTATTATTTTAAT
102856887 AAATTATATTTATTATATTAAT
1 -AATT-TA-TTA-T-T-TTAAT
102856909 AATTTATTAT
1 AATTTATTAT
102856919 ATGACCAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
15 4 0.06
16 14 0.22
17 18 0.29
18 8 0.13
19 6 0.10
20 3 0.05
21 5 0.08
22 5 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTATTATTTTAAT
Found at i:102856920 original size:25 final size:22
Alignment explanation
Indices: 102856872--102856915 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
102856862 ATATTAAATA
*
102856872 ATTTATTATTTTAATAAATTAT
1 ATTTATTATATTAATAAATTAT
*
102856894 ATTTATTATATTAATAATTTAT
1 ATTTATTATATTAATAAATTAT
102856916 TATATGACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTTATTATATTAATAAATTAT
Found at i:102858633 original size:60 final size:60
Alignment explanation
Indices: 102858532--102858646 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
102858522 AATATTTTTA
* *
102858532 TAATTATTTTAAAATTAATTTGTTTGTAATTTAAGAATATGTTATAAATTGTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAAGAATATGTTATAAATTGTTGTGTTTG
* *
102858592 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGACTATGTTATAAATTGTTGT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAAGAATATGTTATAAATTGTTGT
102858647 ATTTAGTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAAGAATATGTTATAAATTGTTGTGTTTG
Found at i:102858894 original size:59 final size:59
Alignment explanation
Indices: 102858781--102858916 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
102858771 AATTTTATAG
* * *
102858781 TTATTTTGTTAGTAGTTTTATGATTAGGTTATAAATTGTTAGTGTTTTGTTATAGTTAT
1 TTATTTTGTTAGTAATTTTATGATTAGGTTACAAATTGTTAGTGTTTAGTTATAGTTAT
* *
102858840 TTATTTTGTTAGTAA-TTTATGAGATTATGTTACAAATTGTTAGTGTTTAGTATAGAGTT-T
1 TTATTTTGTTAGTAATTTTAT--GATTAGGTTACAAATTGTTAGTGTTTAGT-TATAGTTAT
102858900 TATGATTTT-TTAGTAAT
1 T-T-ATTTTGTTAGTAAT
102858917 GTATTTTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
58 5 0.08
59 14 0.21
60 28 0.42
61 14 0.21
62 5 0.08
ACGTcount: A:0.26, C:0.01, G:0.18, T:0.55
Consensus pattern (59 bp):
TTATTTTGTTAGTAATTTTATGATTAGGTTACAAATTGTTAGTGTTTAGTTATAGTTAT
Found at i:102859954 original size:7 final size:7
Alignment explanation
Indices: 102859940--102859983 Score: 81
Period size: 7 Copynumber: 6.4 Consensus size: 7
102859930 TTATATTGAG
102859940 ATTA-TT
1 ATTATTT
102859946 ATTATTT
1 ATTATTT
102859953 ATTATTT
1 ATTATTT
102859960 ATTATTT
1 ATTATTT
102859967 ATTATTT
1 ATTATTT
102859974 ATTATTT
1 ATTATTT
102859981 ATT
1 ATT
102859984 TAATTAACTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.11
7 33 0.89
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
ATTATTT
Found at i:102860004 original size:4 final size:4
Alignment explanation
Indices: 102859947--102859985 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
102859937 GAGATTATTA
102859947 TTAT TTA- TTAT TTA- TTAT TTA- TTAT TTA- TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
102859986 ATTAACTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
3 12 0.39
4 19 0.61
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:102865770 original size:60 final size:60
Alignment explanation
Indices: 102865677--102865800 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 60
102865667 AAATAAACCA
102865677 ATATTAATGCAATATCTGGGTGTACAAATTTAGTTTAAAGCTCTAGAAGAGCTAATATTG
1 ATATTAATGCAATATCTGGGTGTACAAATTTAGTTTAAAGCTCTAGAAGAGCTAATATTG
* *
102865737 ATATTAATGCAATATTTGGGTGTATAAATTTAGTTTAAAGCTCTAGAAGAGCTAATATTG
1 ATATTAATGCAATATCTGGGTGTACAAATTTAGTTTAAAGCTCTAGAAGAGCTAATATTG
102865797 ATAT
1 ATAT
102865801 ATCTAAAAGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (60 bp):
ATATTAATGCAATATCTGGGTGTACAAATTTAGTTTAAAGCTCTAGAAGAGCTAATATTG
Found at i:102866180 original size:21 final size:21
Alignment explanation
Indices: 102866154--102866195 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102866144 CATAAATAAT
* **
102866154 ATAATAGTTTTGCCTTTTAAC
1 ATAATAATTTTGAATTTTAAC
102866175 ATAATAATTTTGAATTTTAAC
1 ATAATAATTTTGAATTTTAAC
102866196 TTTAGAAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.48
Consensus pattern (21 bp):
ATAATAATTTTGAATTTTAAC
Found at i:102869874 original size:28 final size:28
Alignment explanation
Indices: 102869824--102869882 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
102869814 TAGCAAGAAA
*
102869824 AAAATCTGAAATTTTGGTGAAATAAGAGT
1 AAAATCTGAAATTTTGGTAAAATAA-AGT
*
102869853 AAAAT-TGAAAATTTT-GTAAAATTAAGT
1 AAAATCTG-AAATTTTGGTAAAATAAAGT
102869880 AAA
1 AAA
102869883 TAAAATAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.22
28 9 0.33
29 12 0.44
ACGTcount: A:0.51, C:0.02, G:0.15, T:0.32
Consensus pattern (28 bp):
AAAATCTGAAATTTTGGTAAAATAAAGT
Found at i:102870431 original size:105 final size:101
Alignment explanation
Indices: 102870252--102870449 Score: 263
Period size: 105 Copynumber: 1.9 Consensus size: 101
102870242 GAATTGATGG
* * *
102870252 ATAAGACAATGGTTAGACCATGGTAATGTTTAAATGTAAGACCATAACTGGGCTATGGCATTTTA
1 ATAAGACAATGGTTAGACCATGGTAATGTATAAATGTAAGACCATAACTGGGCTATGGCATCTGA
*
102870317 GTGAAAAGACTATAACTGGGTTATGACACCATGAAC
66 GTGAAAAGACCATAACTGGGTTATGACACCATGAAC
* * * *
102870353 ATAAGACCATGGTTGGACCATGGTAGTATATGTATAAGTGTAAGACCATAATTGGGCTATGGCAT
1 ATAAGACAATGGTTAGACCAT-G--GTA-ATGTATAAATGTAAGACCATAACTGGGCTATGGCAT
*
102870418 CCTGA-TGATAAGACCATAACTGGGTTATGACA
62 -CTGAGTGAAAAGACCATAACTGGGTTATGACA
102870450 TTACGAGTGT
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
101 19 0.23
102 1 0.01
104 3 0.04
105 58 0.70
106 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (101 bp):
ATAAGACAATGGTTAGACCATGGTAATGTATAAATGTAAGACCATAACTGGGCTATGGCATCTGA
GTGAAAAGACCATAACTGGGTTATGACACCATGAAC
Found at i:102870463 original size:33 final size:33
Alignment explanation
Indices: 102870389--102870467 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
102870379 TATATGTATA
* * *
102870389 AGTGTAAGACCATAATTGGGCTATGGCATCCTG
1 AGTGTAAGACCATAACTGGGCTATGACATACTG
*
102870422 A-TGATAAGACCATAACTGGGTTATGACATTAC-G
1 AGTG-TAAGACCATAACTGGGCTATGACA-TACTG
102870455 AGTGTAAGACCAT
1 AGTGTAAGACCAT
102870468 GGCAAGGCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 2 0.05
33 33 0.85
34 4 0.10
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (33 bp):
AGTGTAAGACCATAACTGGGCTATGACATACTG
Found at i:102872249 original size:24 final size:24
Alignment explanation
Indices: 102872218--102872273 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
102872208 TCCGGGCTGT
102872218 ATAACGGGAAACTCATAAGAGCC-
1 ATAACGGGAAACTCATAAGAGCCA
* * *
102872241 ATAATCGGGAAGCTCGTATGAGCCA
1 ATAA-CGGGAAACTCATAAGAGCCA
102872266 ATAACGGG
1 ATAACGGG
102872274 TAGTTCTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 4 0.14
24 20 0.71
25 4 0.14
ACGTcount: A:0.38, C:0.20, G:0.27, T:0.16
Consensus pattern (24 bp):
ATAACGGGAAACTCATAAGAGCCA
Found at i:102883792 original size:45 final size:45
Alignment explanation
Indices: 102883742--102883929 Score: 234
Period size: 45 Copynumber: 4.2 Consensus size: 45
102883732 TGCTGGAGGT
* * * * *
102883742 GCTGGAGGTGCCGAAGGAGGCTGGAAGGGGTTTGGGATAAATGGA
1 GCTGGAGGTGCGGGAGGAGGCTGAAAAGGGTTTGGAATAAATGGA
* *
102883787 GCTGGAGGTGCGGGAGGAGGCTGGAAAGGGTTTGGAATAAGTGGA
1 GCTGGAGGTGCGGGAGGAGGCTGAAAAGGGTTTGGAATAAATGGA
* * *
102883832 GCCGGTGGTGCGGGAGGAGGCTGAAAAGGGTTTGGAATAAGTGGA
1 GCTGGAGGTGCGGGAGGAGGCTGAAAAGGGTTTGGAATAAATGGA
* * * *
102883877 GCCGGTGGGGCTGGAGGAGGCTGAAAAGGGTTTGGAATAAGA-GGA
1 GCTGGAGGTGCGGGAGGAGGCTGAAAAGGGTTTGGAATAA-ATGGA
102883922 GCTGGAGG
1 GCTGGAGG
102883930 AGGCTGAAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 129 1.00
ACGTcount: A:0.24, C:0.09, G:0.50, T:0.17
Consensus pattern (45 bp):
GCTGGAGGTGCGGGAGGAGGCTGAAAAGGGTTTGGAATAAATGGA
Found at i:102883933 original size:36 final size:36
Alignment explanation
Indices: 102883881--102883998 Score: 200
Period size: 36 Copynumber: 3.3 Consensus size: 36
102883871 AGTGGAGCCG
*
102883881 GTGGGGCTGGAGGAGGCTGAAAAGGGTTTGGAATAA
1 GTGGAGCTGGAGGAGGCTGAAAAGGGTTTGGAATAA
* *
102883917 GAGGAGCTGGAGGAGGCTGAAAGGGGTTTGGAATAA
1 GTGGAGCTGGAGGAGGCTGAAAAGGGTTTGGAATAA
*
102883953 GTGGAGCTGGAGGAGGCTGAAATGGGTTTGGAATAA
1 GTGGAGCTGGAGGAGGCTGAAAAGGGTTTGGAATAA
102883989 GTGGAGCTGG
1 GTGGAGCTGG
102883999 TGGTGGCAGT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 77 1.00
ACGTcount: A:0.27, C:0.06, G:0.47, T:0.19
Consensus pattern (36 bp):
GTGGAGCTGGAGGAGGCTGAAAAGGGTTTGGAATAA
Found at i:102886539 original size:11 final size:10
Alignment explanation
Indices: 102886511--102886553 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
102886501 AGAGAATGGG
102886511 AAAT-AAAGA
1 AAATAAAAGA
102886520 AAATAAAAGA
1 AAATAAAAGA
*
102886530 AAGTTAAAAGA
1 AA-ATAAAAGA
102886541 AAATAAAAGA
1 AAATAAAAGA
102886551 AAA
1 AAA
102886554 AATTAAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
9 4 0.13
10 17 0.57
11 9 0.30
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (10 bp):
AAATAAAAGA
Found at i:102886900 original size:24 final size:24
Alignment explanation
Indices: 102886853--102886897 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
102886843 CTATTCCAAA
102886853 AAAGAAAAAAGTTTAAAATTTTGG
1 AAAGAAAAAAGTTTAAAATTTTGG
102886877 AAAGAAAAAAG-TTAAAATTTT
1 AAAGAAAAAAGTTTAAAATTTT
102886898 TGGCTTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (24 bp):
AAAGAAAAAAGTTTAAAATTTTGG
Found at i:102888553 original size:55 final size:53
Alignment explanation
Indices: 102888369--102888669 Score: 230
Period size: 54 Copynumber: 5.5 Consensus size: 53
102888359 AAAAAGATTT
* *
102888369 TTTTTTTGGTACTGGCCTGTCAATGGTCGGCACCAATAATTTAAAAAAAAATTAAAA
1 TTTTTTTGGTGCTGGCCTGTCAATGG-CGGCACCAGT-A-TTAAAAAAAAATT-AAA
* * * * * ** *****
102888426 ATTTTTTAGTGCTGGCCTGTTAATGGCAGGCACTAG-AATACGAGTTTTTTAAAA
1 TTTTTTTGGTGCTGGCCTGTCAATGGC-GGCACCAGTATTAAAAAAAAATT-AAA
*****
102888480 AAAAATTGGTGCTGGCCTGTCAATGG-GGCACCAGTATTTAAAAAAAAATTTGAAA
1 TTTTTTTGGTGCTGGCCTGTCAATGGCGGCACCAGTA-TTAAAAAAAAA-TT-AAA
* *
102888535 TTTTTTTAGTGCTGGCCTGTCAATGGTCGACACCAGTATT-AAAAAAAATTAAA
1 TTTTTTTGGTGCTGGCCTGTCAATGG-CGGCACCAGTATTAAAAAAAAATTAAA
* * * *
102888588 TATTTTTTGGTGCTAGCTTGTCAATGGCACGCACCAGTATTAAAAAAAAATCAAA
1 T-TTTTTTGGTGCTGGCCTGTCAATGGC-GGCACCAGTATTAAAAAAAAATTAAA
* *
102888643 TTTTTTTGGTGTTGGCCTATCAATGGC
1 TTTTTTTGGTGCTGGCCTGTCAATGGC
102888670 CAGCACTAAA
Statistics
Matches: 188, Mismatches: 47, Indels: 21
0.73 0.18 0.08
Matches are distributed among these distances:
52 7 0.04
53 6 0.03
54 88 0.47
55 47 0.25
56 3 0.02
57 37 0.20
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (53 bp):
TTTTTTTGGTGCTGGCCTGTCAATGGCGGCACCAGTATTAAAAAAAAATTAAA
Found at i:102888587 original size:109 final size:109
Alignment explanation
Indices: 102888374--102888669 Score: 269
Period size: 109 Copynumber: 2.7 Consensus size: 109
102888364 GATTTTTTTT
* * *
102888374 TTGGTACTGGCCTGTCAATGGTCGGCACCAATAATTTAAAAAAAAATTAAAAATTTTTTAGTGCT
1 TTGGTGCTGGCCTGTCAATGG-CGGCACCAGT-ATTTAAAAAAAAATTAAAATTTTTTTAGTGCT
* * * * *****
102888439 GGCCTGTTAATGGCAGGCACTAGAATACGAGTTTTTTAAAAAAAAA
64 GGCCTGTCAATGGCAGACACCAGAATACAAAAAAATTAAAAAAAAA
*
102888485 TTGGTGCTGGCCTGTCAATGG-GGCACCAGTATTTAAAAAAAAATTTGAAATTTTTTTAGTGCTG
1 TTGGTGCTGGCCTGTCAATGGCGGCACCAGTATTTAAAAAAAAA-TTAAAATTTTTTTAGTGCTG
* * ****
102888549 GCCTGTCAATGGTC-GACACCAGTATTA-AAAAAAATTAAATATTTT
65 GCCTGTCAATGG-CAGACACCAG-AATACAAAAAAATTAAAAAAAAA
* * * * * *
102888594 TTGGTGCTAGCTTGTCAATGGCACGCACCAGTA-TTAAAAAAAAA-TCAAATTTTTTTGGTGTTG
1 TTGGTGCTGGCCTGTCAATGGC-GGCACCAGTATTTAAAAAAAAATTAAAATTTTTTTAGTGCTG
*
102888657 GCCTATCAATGGC
65 GCCTGTCAATGGC
102888670 CAGCACTAAA
Statistics
Matches: 154, Mismatches: 26, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
107 1 0.01
108 40 0.26
109 69 0.45
110 15 0.10
111 29 0.19
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (109 bp):
TTGGTGCTGGCCTGTCAATGGCGGCACCAGTATTTAAAAAAAAATTAAAATTTTTTTAGTGCTGG
CCTGTCAATGGCAGACACCAGAATACAAAAAAATTAAAAAAAAA
Found at i:102890460 original size:3 final size:3
Alignment explanation
Indices: 102890452--102890495 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
102890442 AGATATTTAC
102890452 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TCTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
102890496 ATTGAGATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:102892664 original size:20 final size:20
Alignment explanation
Indices: 102892639--102892692 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
102892629 TGCCCACGGG
*
102892639 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTCC
102892659 CAGGCCACACGGGCATGTCC
1 CAGGCCACACGGGCATGTCC
102892679 CAGGCCACACGGGC
1 CAGGCCACACGGGC
102892693 GTGTGCCCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.39, G:0.31, T:0.09
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:102894594 original size:27 final size:27
Alignment explanation
Indices: 102894564--102894615 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
102894554 AAGAAAGATA
*
102894564 AATTCAAAAGAAATGAGGAAAAAATTT
1 AATTCAAAAGAAATGAGAAAAAAATTT
* *
102894591 AATTGAAATGAAATGAGAAAAAAAT
1 AATTCAAAAGAAATGAGAAAAAAAT
102894616 GAAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.62, C:0.02, G:0.15, T:0.21
Consensus pattern (27 bp):
AATTCAAAAGAAATGAGAAAAAAATTT
Found at i:102894691 original size:76 final size:76
Alignment explanation
Indices: 102894490--102894689 Score: 196
Period size: 76 Copynumber: 2.7 Consensus size: 76
102894480 AAAAATTGAT
* * * * * * *
102894490 AATTTAAATGAAATGA-GAAAAAA-TAAATTGAAATGAAACG-GTACAAAATTTAAATGAAAATT
1 AATTCAAAAGAAATGAGGAAAAAATTTAATTGAAATGAAATGAG-AAAAAAATGAAATGAAAATT
*
102894552 GAAAGAAAGATA
65 GAAAGAAAGAAA
* *
102894564 AATTCAAAAGAAATGAGGAAAAAATTTAATTGAAATGAAATGAGAAAAAAATGAAATTAAATTTG
1 AATTCAAAAGAAATGAGGAAAAAATTTAATTGAAATGAAATGAGAAAAAAATGAAATGAAAATTG
102894629 AAAGAAAGAAA
66 AAAGAAAGAAA
* * ** *
102894640 AATTTAAATG-AATG-GGAGAAACTTTTAATTTAAAT-AAGATGAGAAAAAAA
1 AATTCAAAAGAAATGAGGA-AAAAATTTAATTGAAATGAA-ATGAGAAAAAAA
102894690 ATTAAATAGA
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
74 19 0.18
75 37 0.35
76 49 0.46
77 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.15, T:0.23
Consensus pattern (76 bp):
AATTCAAAAGAAATGAGGAAAAAATTTAATTGAAATGAAATGAGAAAAAAATGAAATGAAAATTG
AAAGAAAGAAA
Found at i:102894740 original size:49 final size:47
Alignment explanation
Indices: 102894687--102894791 Score: 122
Period size: 49 Copynumber: 2.2 Consensus size: 47
102894677 GATGAGAAAA
* *
102894687 AAAATTAAATAGAAAGATAGATAATTTAAAAGAAATGACA-AAAAAATTT
1 AAAATTAAATAGAAAAATAGAAAATTTAAAAGAAAT-A-AGAAAAAA-TT
** * *
102894736 AAAATTGCATTGAAAAATAGAAAATTTAAATGAAATAAGAAAAAATT
1 AAAATTAAATAGAAAAATAGAAAATTTAAAAGAAATAAGAAAAAATT
102894783 AAAATTAAA
1 AAAATTAAA
102894792 ATTAAAAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
47 10 0.21
48 7 0.15
49 30 0.64
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.25
Consensus pattern (47 bp):
AAAATTAAATAGAAAAATAGAAAATTTAAAAGAAATAAGAAAAAATT
Found at i:102894769 original size:20 final size:20
Alignment explanation
Indices: 102894746--102894834 Score: 72
Period size: 20 Copynumber: 4.2 Consensus size: 20
102894736 AAAATTGCAT
*
102894746 TGAAAAATAGAAAATTTAAA
1 TGAAAAATAAAAAATTTAAA
* *
102894766 TGAAATAAGAAAAAATTAAAA
1 TGAAA-AATAAAAAATTTAAA
* * *
102894787 TTAAAATTAAAAAATATAAA
1 TGAAAAATAAAAAATTTAAA
102894807 TGAATTGAGAA-AAAAAATTTAAA
1 TGAA---A-AATAAAAAATTTAAA
102894830 TGAAA
1 TGAAA
102894835 TGAAATTAGA
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
20 20 0.38
21 16 0.30
23 16 0.30
24 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (20 bp):
TGAAAAATAAAAAATTTAAA
Found at i:102894837 original size:5 final size:5
Alignment explanation
Indices: 102894827--102894893 Score: 62
Period size: 5 Copynumber: 12.8 Consensus size: 5
102894817 AAAAAAATTT
* * * *
102894827 AAATG AAATG AAATT AGAATA AAATG AAGTTG AAATG AAATA AAATG AAGATG
1 AAATG AAATG AAATG A-AATG AAATG AA-ATG AAATG AAATG AAATG AA-ATG
*
102894880 AAATG AAAAG AAAT
1 AAATG AAATG AAAT
102894894 AAAAAAAAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
5 37 0.74
6 13 0.26
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (5 bp):
AAATG
Found at i:102894840 original size:16 final size:16
Alignment explanation
Indices: 102894821--102894887 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
102894811 TTGAGAAAAA
*
102894821 AAATTTAAATGAAATG
1 AAATTGAAATGAAATG
*
102894837 AAATT-AGAATAAAATG
1 AAATTGA-AATGAAATG
*
102894853 AAGTTGAAATGAAAT-
1 AAATTGAAATGAAATG
*
102894868 AAAATGAAGATGAAATG
1 AAATTGAA-ATGAAATG
102894885 AAA
1 AAA
102894888 AGAAATAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
15 7 0.17
16 31 0.74
17 4 0.10
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (16 bp):
AAATTGAAATGAAATG
Found at i:102894851 original size:21 final size:21
Alignment explanation
Indices: 102894827--102894887 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
102894817 AAAAAAATTT
*
102894827 AAATGAA-ATGAAATTAGAATA
1 AAATGAAGATGAAATGA-AATA
*
102894848 AAATGAAGTTGAAATGAAATA
1 AAATGAAGATGAAATGAAATA
102894869 AAATGAAGATGAAATGAAA
1 AAATGAAGATGAAATGAAA
102894888 AGAAATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 29 0.81
22 7 0.19
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (21 bp):
AAATGAAGATGAAATGAAATA
Found at i:102894862 original size:11 final size:11
Alignment explanation
Indices: 102894827--102894886 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
102894817 AAAAAAATTT
102894827 AAATGAA-ATG
1 AAATGAAGATG
* *
102894837 AAAT-TAGAATA
1 AAATGAAG-ATG
*
102894848 AAATGAAGTTG
1 AAATGAAGATG
*
102894859 AAATGAA-ATA
1 AAATGAAGATG
102894869 AAATGAAGATG
1 AAATGAAGATG
102894880 AAATGAA
1 AAATGAA
102894887 AAGAAATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
9 1 0.03
10 12 0.32
11 23 0.61
12 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.18, T:0.22
Consensus pattern (11 bp):
AAATGAAGATG
Found at i:102895156 original size:36 final size:35
Alignment explanation
Indices: 102895082--102895156 Score: 89
Period size: 37 Copynumber: 2.1 Consensus size: 35
102895072 TGAAAATATG
**
102895082 AAAAAAAATTAAAAAATTTTAAATTTAAATTGACAA
1 AAAAAAAATTAAAAAATTTTAAAAATAAATTGA-AA
* *
102895118 AAACAAAATATAAAAAATTTTAAAAATAGA-TGAAA
1 AAAAAAAAT-TAAAAAATTTTAAAAATAAATTGAAA
102895153 AAAA
1 AAAA
102895157 TTTAAATGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
35 5 0.15
36 11 0.33
37 17 0.52
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (35 bp):
AAAAAAAATTAAAAAATTTTAAAAATAAATTGAAA
Found at i:102895225 original size:24 final size:24
Alignment explanation
Indices: 102895195--102895287 Score: 107
Period size: 24 Copynumber: 3.6 Consensus size: 24
102895185 TTTAATTAAT
102895195 TTGAAAAAAATAATATAAAATGAA
1 TTGAAAAAAATAATATAAAATGAA
102895219 TTGAAAAAAATAATATAAAAAAT-AA
1 TTGAAAAAAATAATAT--AAAATGAA
102895244 TATGAAAAGAAAATAATAATATGAAATGAA
1 T-TG-AAA-AAAATAAT-ATA--AAATGAA
102895274 TTGAAAAAAATAAT
1 TTGAAAAAAATAAT
102895288 TGAAATAAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 15
0.80 0.00 0.20
Matches are distributed among these distances:
24 16 0.27
25 3 0.05
26 7 0.12
27 12 0.20
28 11 0.18
29 8 0.13
30 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.25
Consensus pattern (24 bp):
TTGAAAAAAATAATATAAAATGAA
Found at i:102895284 original size:14 final size:14
Alignment explanation
Indices: 102895209--102895300 Score: 63
Period size: 14 Copynumber: 6.6 Consensus size: 14
102895199 AAAAAATAAT
102895209 ATAAAATGAATTGAA
1 ATAAAAT-AATTGAA
102895224 A-AAAATAA-T-ATA
1 ATAAAATAATTGA-A
102895236 A-AAAATAATATGAAA
1 ATAAAATAAT-TG-AA
*
102895251 AGAAAATAA-T-AA
1 ATAAAATAATTGAA
*
102895263 TATGAAATGAATTGAA
1 -ATAAAAT-AATTGAA
102895279 A-AAAATAATTGAA
1 ATAAAATAATTGAA
102895292 ATAAAATAA
1 ATAAAATAA
102895301 AATAAAATTA
Statistics
Matches: 63, Mismatches: 3, Indels: 23
0.71 0.03 0.26
Matches are distributed among these distances:
11 1 0.02
12 12 0.19
13 15 0.24
14 20 0.32
15 5 0.08
16 10 0.16
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (14 bp):
ATAAAATAATTGAA
Found at i:102895307 original size:24 final size:24
Alignment explanation
Indices: 102895195--102895308 Score: 82
Period size: 24 Copynumber: 4.9 Consensus size: 24
102895185 TTTAATTAAT
*
102895195 TTGAAA-AAAATAATATAAAATGAA
1 TTGAAATAAAATAAAATAAAAT-AA
*
102895219 TTGAAA-AAAATAATATAAAA-AA
1 TTGAAATAAAATAAAATAAAATAA
*
102895241 -T-AATATGAAAAGAAAAT--AATAA
1 TTGAA-AT-AAAATAAAATAAAATAA
* * *
102895263 TATGAAATGAATTGAAA-AAAATAA
1 T-TGAAATAAAATAAAATAAAATAA
102895287 TTGAAATAAAATAAAATAAAAT
1 TTGAAATAAAATAAAATAAAAT
102895309 TAAAATGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 4 0.06
23 25 0.35
24 34 0.48
25 2 0.03
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.25
Consensus pattern (24 bp):
TTGAAATAAAATAAAATAAAATAA
Found at i:102897363 original size:54 final size:55
Alignment explanation
Indices: 102897304--102897443 Score: 228
Period size: 55 Copynumber: 2.6 Consensus size: 55
102897294 TTTTTAATAT
* *
102897304 TGGTGCCAGCCATTGATAGGCCAACACCAAATTTTTTTTT-AAAAACTCGTATTC
1 TGGTGCCAGCCATTGACAGGCCAGCACCAAATTTTTTTTTAAAAAACTCGTATTC
*
102897358 TGGTGCCAGTCATTGACAGGCCAGCACCAAATTTTTTTTTAAAAAACTCGTATTC
1 TGGTGCCAGCCATTGACAGGCCAGCACCAAATTTTTTTTTAAAAAACTCGTATTC
* *
102897413 TGGTGCCGGCCATTGACAAGCCAGCACCAAA
1 TGGTGCCAGCCATTGACAGGCCAGCACCAAA
102897444 AAAATTTGAA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (55 bp):
TGGTGCCAGCCATTGACAGGCCAGCACCAAATTTTTTTTTAAAAAACTCGTATTC
Found at i:102897529 original size:57 final size:56
Alignment explanation
Indices: 102897412--102897577 Score: 203
Period size: 56 Copynumber: 2.9 Consensus size: 56
102897402 AACTCGTATT
* *
102897412 CTGGTGCCGGCCATTGACA-AGCCAGCACCAAAAAAATTTGAATTTTTTTT-AAATTA
1 CTGGTGCCGGCCATTGACAGA-CCAGCACAAAAAAAAATT-AATTTTTTTTAAAATTA
* ** * *
102897468 CTGGTGCCGGCTATTGGTAGGCTAGCACAAAAAAAAAATTAATTTTTTTTAAAATTA
1 CTGGTGCCGGCCATTGACAGACCAGCAC-AAAAAAAAATTAATTTTTTTTAAAATTA
*
102897525 CTGGTGCCGGCCATTGACAGACCAGCACAAAAAAAAATT-CTTTTTTTTGAAAA
1 CTGGTGCCGGCCATTGACAGACCAGCACAAAAAAAAATTAATTTTTTTT-AAAA
102897578 CTCGTATTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
55 8 0.09
56 47 0.51
57 38 0.41
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (56 bp):
CTGGTGCCGGCCATTGACAGACCAGCACAAAAAAAAATTAATTTTTTTTAAAATTA
Found at i:102904144 original size:12 final size:11
Alignment explanation
Indices: 102904126--102904166 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 11
102904116 TAAAAGAAAA
102904126 TTTAAAATTAT
1 TTTAAAATTAT
*
102904137 TTTCAAA--AT
1 TTTAAAATTAT
102904146 TTTAAAATTATT
1 TTTAAAATTA-T
102904158 TTTAAAATT
1 TTTAAAATT
102904167 TAAAATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 8 0.32
11 7 0.28
12 10 0.40
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTAAAATTAT
Found at i:102904151 original size:20 final size:18
Alignment explanation
Indices: 102904122--102904192 Score: 90
Period size: 19 Copynumber: 3.7 Consensus size: 18
102904112 TTGGTAAAAG
102904122 AAAATTTAAAATTATTTT
1 AAAATTTAAAATTATTTT
102904140 CAAAATTTTAAAATTATTTTT
1 -AAAA-TTTAAAATTA-TTTT
102904161 AAAATTTAAAA-TATTTAT
1 AAAATTTAAAATTATTT-T
102904179 AAAATTTCAAAATT
1 AAAATTT-AAAATT
102904193 TATATTTTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.06
18 10 0.21
19 15 0.32
20 15 0.32
21 4 0.09
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAAATTTAAAATTATTTT
Found at i:102904195 original size:17 final size:18
Alignment explanation
Indices: 102904122--102904196 Score: 82
Period size: 20 Copynumber: 4.1 Consensus size: 18
102904112 TTGGTAAAAG
102904122 AAAATTTAAAATTATTT-T
1 AAAATTTAAAA-TATTTAT
*
102904140 CAAAATTTTAAAATTATTTTT
1 -AAAA-TTTAAAA-TATTTAT
102904161 AAAATTTAAAATATTTAT
1 AAAATTTAAAATATTTAT
*
102904179 AAAATTTCAAA-ATTTAT
1 AAAATTTAAAATATTTAT
102904196 A
1 A
102904197 TTTTAAAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.13
18 16 0.31
19 11 0.21
20 17 0.33
21 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
AAAATTTAAAATATTTAT
Found at i:102904224 original size:9 final size:10
Alignment explanation
Indices: 102904200--102904226 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
102904190 ATTTATATTT
102904200 TAAAAAATTA
1 TAAAAAATTA
102904210 TAAAAAATTA
1 TAAAAAATTA
102904220 TAAAAAA
1 TAAAAAA
102904227 AATATATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:102904246 original size:23 final size:22
Alignment explanation
Indices: 102904201--102904247 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
102904191 TTTATATTTT
*
102904201 AAAAAATTATAAAAAATTATAA
1 AAAAAATTATAAAAAAGTATAA
102904223 AAAAAATATATAAAGAAAGT-TAA
1 AAAAAAT-TATAAA-AAAGTATAA
102904246 AA
1 AA
102904248 TTAAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 11 0.50
24 4 0.18
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (22 bp):
AAAAAATTATAAAAAAGTATAA
Found at i:102904311 original size:16 final size:16
Alignment explanation
Indices: 102904290--102904320 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102904280 CTAAATAAGT
102904290 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
102904306 TTTCAAATTTATATG
1 TTTCAAATATATATG
102904321 CTCTAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:102904771 original size:11 final size:11
Alignment explanation
Indices: 102904738--102904791 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
102904728 AAAGATCAAC
* *
102904738 AAATTAAATTA
1 AAATAAAATAA
* *
102904749 AATTAAATTAA
1 AAATAAAATAA
*
102904760 ACATAAAATAA
1 AAATAAAATAA
*
102904771 AAATAAAAGAA
1 AAATAAAATAA
102904782 AAATAAAATA
1 AAATAAAATA
102904792 GGGTTTCCGG
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:102928704 original size:47 final size:46
Alignment explanation
Indices: 102928653--102928829 Score: 218
Period size: 47 Copynumber: 3.8 Consensus size: 46
102928643 TGGTTGAGCA
102928653 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
102928700 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
102928745 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
102928793 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102928830 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.33
47 58 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:102932647 original size:31 final size:31
Alignment explanation
Indices: 102932612--102932699 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 31
102932602 TTAATGTAAT
* *
102932612 ATTTGGAACTTGAATTTGACACTTTTTCATA
1 ATTTGGAATTTGAACTTGACACTTTTTCATA
* * *
102932643 ATTT-GATATTTGAACTTGAAATTTTTTCTTA
1 ATTTGGA-ATTTGAACTTGACACTTTTTCATA
* *
102932674 ATTTGGTATTTGAACTTAACACTTTT
1 ATTTGGAATTTGAACTTGACACTTTT
102932700 AAAAAAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
30 2 0.04
31 43 0.93
32 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.50
Consensus pattern (31 bp):
ATTTGGAATTTGAACTTGACACTTTTTCATA
Found at i:102940049 original size:21 final size:19
Alignment explanation
Indices: 102940004--102940050 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 19
102939994 TATTAAATAA
*
102940004 ATTTTTTTATAATTTTTAT
1 ATTTTTTTATAATTTTAAT
102940023 ACTTTTTTTAATAATTTTAAT
1 A-TTTTTTT-ATAATTTTAAT
102940044 GATTTTT
1 -ATTTTT
102940051 AATTTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 7 0.29
21 15 0.62
22 1 0.04
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
ATTTTTTTATAATTTTAAT
Found at i:102942805 original size:49 final size:49
Alignment explanation
Indices: 102942746--102942972 Score: 283
Period size: 49 Copynumber: 4.6 Consensus size: 49
102942736 ATCTGGTACG
* * *
102942746 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
* * *
102942795 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
** ** *
102942844 TGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACA
* * * *
102942894 CATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGATACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGATACA
*
102942945 CATAGTAGTCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
102942973 TGCGACCTCA
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 76 0.49
50 41 0.27
51 36 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
Found at i:102942918 original size:99 final size:100
Alignment explanation
Indices: 102942746--102942979 Score: 312
Period size: 99 Copynumber: 2.4 Consensus size: 100
102942736 ATCTGGTACG
* * ** *
102942746 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGATACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACATAGTAGCCTGCACT
102942811 TAGTACTACACACGTGATCA-A-TTATCCGG-TACA
66 TAGTACTACACACGTGATCACAGTT-TCCGGATACA
** * *
102942844 TGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACATAGTAGCCTGCAC
* *
102942909 TTAGTACTACACACGTGATCACAGTTTTCGGATACG
65 TTAGTACTACACACGTGATCACAGTTTCCGGATACA
* *
102942945 CATAGTAGTCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
102942980 TCACAATAGA
Statistics
Matches: 116, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
98 30 0.26
99 46 0.40
100 5 0.04
101 35 0.30
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACATAGTAGCCTGCACT
TAGTACTACACACGTGATCACAGTTTCCGGATACA
Found at i:102945326 original size:17 final size:17
Alignment explanation
Indices: 102945304--102945340 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
102945294 ACCCTACTTG
102945304 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
*
102945321 CCACTAACTCCATTACC
1 CCACTAACTCCATCACC
102945338 CCA
1 CCA
102945341 TTTGCCACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.51, G:0.00, T:0.19
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:102945718 original size:3 final size:3
Alignment explanation
Indices: 102945705--102945839 Score: 82
Period size: 3 Copynumber: 45.0 Consensus size: 3
102945695 TATTTTTAAA
* * * *
102945705 TAT TGT TAT TAT TAT TAT TA- TATT TAT T-T TAT TAC TGT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * *
102945749 TAT T-T TAT ATATT TAT TAC CAT TATT TATT TAT TAT TAT TAG TAA CA-
1 TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT
* * *
102945796 TAT TGT TAT TTT TAT TAT T-T TAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102945840 CATGATACTA
Statistics
Matches: 101, Mismatches: 22, Indels: 18
0.72 0.16 0.13
Matches are distributed among these distances:
2 9 0.09
3 78 0.77
4 13 0.13
5 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:102945738 original size:17 final size:18
Alignment explanation
Indices: 102945710--102945828 Score: 90
Period size: 17 Copynumber: 6.8 Consensus size: 18
102945700 TTAAATATTG
102945710 TTATTATTATTATTATAT
1 TTATTATTATTATTATAT
102945728 TTATT-TTATTACTGT-TA-
1 TTATTATTATTA-T-TATAT
*
102945745 CTATTATT-TTA-TATAT
1 TTATTATTATTATTATAT
**
102945761 TTATTACCATTATT-TAT
1 TTATTATTATTATTATAT
* *
102945778 TTATTATTATTAGTAACAT
1 TTATTATTATTA-TTATAT
* *
102945797 ATTGTTATTTTTATTAT-T
1 -TTATTATTATTATTATAT
102945815 TTATTATTATTATT
1 TTATTATTATTATT
102945829 GTTATTATTA
Statistics
Matches: 77, Mismatches: 14, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
14 1 0.01
15 2 0.03
16 5 0.06
17 41 0.53
18 13 0.17
19 5 0.06
20 10 0.13
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (18 bp):
TTATTATTATTATTATAT
Found at i:102945778 original size:29 final size:29
Alignment explanation
Indices: 102945712--102945839 Score: 81
Period size: 29 Copynumber: 4.6 Consensus size: 29
102945702 AAATATTGTT
* * *
102945712 ATTATTATTATTATATTTATTTTATTACT
1 ATTATTATTATTTTATATATTTTATTACC
* *
102945741 GTTACTATTATTTTATATA-TTTATTACC
1 ATTATTATTATTTTATATATTTTATTACC
* *
102945769 ATTA-T-TTA-TTTAT-TATTATTAGTAAC
1 ATTATTATTATTTTATATATT-TTATTACC
* **
102945795 A-TATTGTTATTTT-TATTATTTTATTATT
1 ATTATTATTATTTTATA-TATTTTATTACC
*
102945823 ATTATTGTTATTATTAT
1 ATTATTATTATT-TTAT
102945840 CATGATACTA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
24 2 0.03
25 8 0.10
26 11 0.14
27 5 0.06
28 20 0.26
29 29 0.37
30 2 0.03
31 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (29 bp):
ATTATTATTATTTTATATATTTTATTACC
Found at i:102945992 original size:3 final size:3
Alignment explanation
Indices: 102945986--102946027 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
102945976 TTTTTCCCTA
* * *
102945986 TAT TAT TAT TAT TTT TAT TTT TAT TAA TA- TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
102946028 GTCTTCTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:102952702 original size:126 final size:131
Alignment explanation
Indices: 102952469--102952837 Score: 495
Period size: 126 Copynumber: 2.8 Consensus size: 131
102952459 TGAATTCACA
* * *
102952469 AGTCTTATCTTCCTGAAGTTGCAAGAAGTAGACTGAAAAATTACAAATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAA-CAGACTG--AAATTACAGATCTTATCTCCATGTATCG
*
102952534 GCTATGGAGCAGATCAGAAATTGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAAATTTTAG-
63 GCTATGGAGCAGATCAGAAA-TGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGC
102952598 CCCCT
127 CCCCT
* *
102952603 AGTCTTATCTTTCTGAAGTTGCAGG-A-A-AC-G-GATTACAGATCTTATCTCCATGTATCGGCT
1 AGTCTTATCTTCCTGAAGTTGCAGGAACAGACTGAAATTACAGATCTTATCTCCATGTATCGGCT
* * *
102952663 ATGGAGCAGATCA-AAGATGATGAGTCTTATCTCCATGTATCGGCTGTGGAGCAGATTTTAGCCC
66 ATGGAGCAGATCAGAA-ATG-CGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCC
102952727 CCT
129 CCT
*
102952730 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTACAGATCTTAT-T-CATGTATCA
1 AGTCTTATCTTCCTGAAGTTGCAGGAA-CAGACTG-AAA-TTACAGATCTTATCTCCATGTATCG
102952793 GCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCG
63 GCTATGGAGCAGATCAGAAAT-GCGAGTCTTATCTCCATGTATCG
102952838 AATATAGAAC
Statistics
Matches: 210, Mismatches: 12, Indels: 27
0.84 0.05 0.11
Matches are distributed among these distances:
125 4 0.02
126 79 0.38
127 29 0.14
128 1 0.00
129 1 0.00
130 3 0.01
131 3 0.01
132 1 0.00
133 48 0.23
134 28 0.13
135 13 0.06
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (131 bp):
AGTCTTATCTTCCTGAAGTTGCAGGAACAGACTGAAATTACAGATCTTATCTCCATGTATCGGCT
ATGGAGCAGATCAGAAATGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCCCC
T
Found at i:102952893 original size:133 final size:135
Alignment explanation
Indices: 102952635--102952893 Score: 314
Period size: 133 Copynumber: 1.9 Consensus size: 135
102952625 AGGAAACGGA
* *
102952635 TTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAGATGATGAGTCTTATCTCCATG
1 TTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCAAAGATGACGAGTCTTATCTCCATG
** * * * * * ** *
102952700 TATCGGCTGTGGAGCAGATTTTAGCCCCCTAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTG
66 TATCGAATATAGAACAGATTTTAGCCCACTAGCCTTATCTTCCTGAAGAAGCAAGAAGCAGACTG
102952765 AAAAT
131 AAAAT
*
102952770 TTACAGATCTTAT-T-CATGTATCAGCTATGGAGCAGATCAGAA-ATGGCGAGTCTTATCTCCAT
1 TTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCA-AAGATGACGAGTCTTATCTCCAT
*
102952832 GTATCGAATATAGAACAGATTTTAG-CCACTGGCCTTATC-TCTCT-AAGAAAGCAAGAGAGCAG
65 GTATCGAATATAGAACAGATTTTAGCCCACTAGCCTTATCTTC-CTGAAG-AAGCAAGA-AGCAG
102952894 GTTGAAGATA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
131 5 0.05
132 18 0.17
133 67 0.63
134 3 0.03
135 13 0.12
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (135 bp):
TTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCAAAGATGACGAGTCTTATCTCCATG
TATCGAATATAGAACAGATTTTAGCCCACTAGCCTTATCTTCCTGAAGAAGCAAGAAGCAGACTG
AAAAT
Found at i:102953207 original size:43 final size:43
Alignment explanation
Indices: 102953156--102953383 Score: 129
Period size: 43 Copynumber: 5.4 Consensus size: 43
102953146 AGCAAGAGAG
102953156 CAGGCT-GAAGATACGAGCCTTAACCCCCTAAGCAGTAGGGTAA
1 CAGGCTCGAAGATAC-AGCCTTAACCCCCTAAGCAGTAGGGTAA
* * * * *
102953199 CATGCT-GAAAATACAGATCTT-A-TCCCTAAACAGTAGTGG-AA
1 CAGGCTCGAAGATACAG-CCTTAACCCCCTAAGCAGTAG-GGTAA
* * * * *
102953240 -AAGATCGAAGACAACAAGCTTTAACCCCTTAAGCAGTAGGGTAA
1 CAGGCTCGAAGA-TAC-AGCCTTAACCCCCTAAGCAGTAGGGTAA
* * * * * *
102953284 CAGGCTGGAAAATACAG----ATCTCCCCTAAACAGTAGCG-AG
1 CAGGCTCGAAGATACAGCCTTAAC-CCCCTAAGCAGTAGGGTAA
*
102953323 CA-GATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAA
1 CAGGCTCGAAGATA-C-AGCCTTAACCCCCTAAGCAGTAGGGTAA
* *
102953367 CAGGCTGGAAAATACAG
1 CAGGCTCGAAGATACAG
102953384 ATCTCCCCTA
Statistics
Matches: 133, Mismatches: 34, Indels: 36
0.66 0.17 0.18
Matches are distributed among these distances:
38 8 0.06
39 6 0.05
40 18 0.14
41 18 0.14
42 9 0.07
43 38 0.29
44 21 0.16
45 15 0.11
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (43 bp):
CAGGCTCGAAGATACAGCCTTAACCCCCTAAGCAGTAGGGTAA
Found at i:102953210 original size:265 final size:260
Alignment explanation
Indices: 102952762--102953304 Score: 639
Period size: 265 Copynumber: 2.1 Consensus size: 260
102952752 AGGAAGCAGA
*
102952762 CTGAAAATTTACAGATCTTATTCATGTATCAGCTATGGAGCAGATCAGAAATGGCGAGTCTTATC
1 CTGAAAAATTACAGATCTTATTCATGTATCAGCTATGGAGCAGATCAGAAATGGCGAGTCTTATC
* *
102952827 TCCATGTATCGAATATAGAACAGATTTTAGCCACTGGCCTTATCTCTCTAAGAAAGCAAGAGAGC
66 TCCATATATCGAATATAGAACAGATTTTAGCCACCGGCCTTATCTCTCTAAGAAAGCAAGAGAGC
* ** * ** ** *
102952892 AGGTTGAAGATACAAGTTTTATCTTCCTGAAGTTGCAGGAAGCAAATTGAAAATTATAGATCTTA
131 AGGCTGAAGATACAAGCCTTAACCCCCTGAAGCAGCAGG-AGCAAATTGAAAA-TACAGATCTTA
** * * ***
102952957 TCTCCCTAAACAATAGTGGAGCAGATTGAAAATAGTGAGCCTTAACTCCC-TAAGCAGTAGGGTA
194 --TCCCTAAACAATAGTGGAAAAGATCGAAAACAACAAGCCTTAAC-CCCTTAAGCAGTAGGGTA
102953021 ACAGG
256 ACAGG
*
102953026 CT-AAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGCAGATC-GAAAATGGCGAGTCTT
1 CTGAAAAATTACAGATCTTAT-TC-ATGTATCAGCTATGGAGCAGATCAG-AAATGGCGAGTCTT
** * * * **
102953089 ATCTCCATATATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAGAG
63 ATCTCCATATATCGAATATAGAACAGATTTTAGCCACCGGCCTTATCTCTCTAAGAAAGCAAGAG
* * *
102953154 AGCAGGCTGAAGATACGAGCCTTAACCCCCT-AAGCAGTAGG-GTAACATGCTGAAAATACAGAT
128 AGCAGGCTGAAGATACAAGCCTTAACCCCCTGAAGCAGCAGGAGCAA-AT--TGAAAATACAGAT
* * *
102953217 CTTATCCCTAAACAGTAGTGGAAAAGATCGAAGACAACAAGCTTTAACCCCTTAAGCAGTAGGGT
190 CTTATCCCTAAACAATAGTGGAAAAGATCGAAAACAACAAGCCTTAACCCCTTAAGCAGTAGGGT
102953282 AACAGG
255 AACAGG
*
102953288 CTGGAAAA-TACAGATCT
1 CTGAAAAATTACAGATCT
102953305 CCCCTAAACA
Statistics
Matches: 237, Mismatches: 34, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
261 3 0.01
262 67 0.28
263 23 0.10
264 22 0.09
265 122 0.51
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (260 bp):
CTGAAAAATTACAGATCTTATTCATGTATCAGCTATGGAGCAGATCAGAAATGGCGAGTCTTATC
TCCATATATCGAATATAGAACAGATTTTAGCCACCGGCCTTATCTCTCTAAGAAAGCAAGAGAGC
AGGCTGAAGATACAAGCCTTAACCCCCTGAAGCAGCAGGAGCAAATTGAAAATACAGATCTTATC
CCTAAACAATAGTGGAAAAGATCGAAAACAACAAGCCTTAACCCCTTAAGCAGTAGGGTAACAGG
Found at i:102953434 original size:84 final size:84
Alignment explanation
Indices: 102953171--102953616 Score: 553
Period size: 84 Copynumber: 5.3 Consensus size: 84
102953161 TGAAGATACG
* *
102953171 AGCCTTAACCCCCTAAGCAGTAGGGTAACATGCT-GAAAATACAGATCTTATCCCTAAACAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATC-T-CCCCTAAACAGTAG
** *
102953235 TGGAAAAGATCGAAGACAACA
64 TGGAGCAGATCGAAGACAGCA
* * *
102953256 AGCTTTAACCCCTTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG-C
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
*
102953320 GAGCAGATCGAAGATAGCA
66 GAGCAGATCGAAGACAGCA
102953339 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
102953404 GAGCAGATCGAAGACAGCA
66 GAGCAGATCGAAGACAGCA
* * * * *
102953423 AGCCTTGACCCCCTAAACAATAGCGTAACAGGCTGGAAAATACAGATCTTCCCTAAACAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
*
102953488 GAGCATATCGAAGACAGCA
66 GAGCAGATCGAAGACAGCA
* * ** *
102953507 AGCTTTAACCCCTTAAGCAGTAGGGTAACAGG-TTAAAAATTACAAATCTTATCTCCCTAAACAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAA-TACAGATC---TC-CCCTAAACAG
* * * *
102953571 TAGCGGAGCAGAT-TAA-AGA-CT
61 TAGTGGAGCAGATCGAAGACAGCA
* *
102953592 AGCCTTATCTCCCTAAGCAGTAGGG
1 AGCCTTAACCCCCTAAGCAGTAGGG
102953617 GAAACGGGCT
Statistics
Matches: 316, Mismatches: 38, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
83 81 0.26
84 142 0.45
85 54 0.17
86 15 0.05
87 3 0.01
88 21 0.07
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (84 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
GAGCAGATCGAAGACAGCA
Found at i:102953453 original size:167 final size:168
Alignment explanation
Indices: 102953162--102953583 Score: 571
Period size: 167 Copynumber: 2.5 Consensus size: 168
102953152 AGAGCAGGCT
* * *
102953162 GAAGATA-CGAGCCTTAACCCCCTAAGCAGTAGGGTAACATGCTGAAAATACAGATCTTATCCCT
1 GAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTT-CCCCT
** * * * * *
102953226 AAACAGTAGTGGAAAAGATCGAAGACAACAAGCTTTAACCCCTTAAGCAGTAGGGTAACAGGCTG
65 AAACAGTAGTGGAGCAGATCGAAGACAACAAGCCTTAACCCCCTAAACAATAGCGTAACAGGCTG
102953291 GAAAATACAGATCTCCCCTAAACAGTAG-CGAGCAGATC
130 GAAAATACAGATCTCCCCTAAACAGTAGTCGAGCAGATC
102953329 GAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATC-TCCCCT
1 GAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTCCCCT
* *
102953393 AAACAGTAGTGGAGCAGATCGAAGACAGCAAGCCTTGACCCCCTAAACAATAGCGTAACAGGCTG
65 AAACAGTAGTGGAGCAGATCGAAGACAACAAGCCTTAACCCCCTAAACAATAGCGTAACAGGCTG
* * *
102953458 GAAAATACAGATCTTCCCTAAACAGTAGTGGAGCATATC
130 GAAAATACAGATCTCCCCTAAACAGTAGTCGAGCAGATC
* * * * * *
102953497 GAAGACAGCAAGCTTTAACCCCTTAAGCAGTAGGGTAACAGGTTAAAAATTACAAATCTTATCTC
1 GAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAA-TACAGATC-T-TC-C
*
102953562 CCTAAACAGTAGCGGAGCAGAT
62 CCTAAACAGTAGTGGAGCAGAT
102953584 TAAAGACTAG
Statistics
Matches: 225, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
167 98 0.44
168 90 0.40
169 13 0.06
171 2 0.01
172 22 0.10
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (168 bp):
GAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTCCCCTA
AACAGTAGTGGAGCAGATCGAAGACAACAAGCCTTAACCCCCTAAACAATAGCGTAACAGGCTGG
AAAATACAGATCTCCCCTAAACAGTAGTCGAGCAGATC
Found at i:102953944 original size:17 final size:17
Alignment explanation
Indices: 102953924--102953962 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
102953914 ACTAAACCGA
102953924 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
*
102953941 CCACTAACTCCATTACC
1 CCACTAACTCCATCACC
102953958 CCACT
1 CCACT
102953963 TGCCACCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.51, G:0.00, T:0.21
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:102954327 original size:3 final size:3
Alignment explanation
Indices: 102954319--102954466 Score: 133
Period size: 3 Copynumber: 49.3 Consensus size: 3
102954309 GGGGAGAGTG
* *
102954319 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA CTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* **
102954366 TTA CTA TTA TT- TTA TATA TTTA TTA CCA TTA TTTA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA -TTA -TTA TTA TTA TTA
* ** * * *
102954414 TTA GTA ACA -TA TTG TTA TTT TTA TTA TT- TTA TTA TTA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102954460 TTA TTA T
1 TTA TTA T
102954467 CATGGTACTA
Statistics
Matches: 118, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
2 7 0.06
3 99 0.84
4 11 0.09
5 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:102956553 original size:22 final size:20
Alignment explanation
Indices: 102956504--102956555 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
102956494 ATTAATAAAT
*
102956504 ATATTTTAATTAAA-AATAA
1 ATATTTTAATAAAATAATAA
*
102956523 ACATTTTAATAAACATAATAA
1 ATATTTTAATAAA-ATAATAA
102956544 ATACTTTTAATA
1 ATA-TTTTAATA
102956556 CTTTATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.41
20 1 0.04
21 7 0.26
22 8 0.30
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
ATATTTTAATAAAATAATAA
Found at i:102965552 original size:27 final size:27
Alignment explanation
Indices: 102965483--102965583 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
102965473 ACCTCGATAC
*
102965483 AATGTTAGCTTGTGTGAGAAAATTCAT
1 AATGTCAGCTTGTGTGAGAAAATTCAT
** * * *
102965510 AATGTCAGCTCATGTGGGCAAATTCGT
1 AATGTCAGCTTGTGTGAGAAAATTCAT
** *
102965537 AATGTCAGCTTGTGTGAGTAACCTTGAT
1 AATGTCAGCTTGTGTGAG-AAAATTCAT
*
102965565 CATTGTCAGCTTGTGTGAG
1 -AATGTCAGCTTGTGTGAG
102965584 CACTTTAGTC
Statistics
Matches: 57, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 36 0.63
28 4 0.07
29 17 0.30
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (27 bp):
AATGTCAGCTTGTGTGAGAAAATTCAT
Found at i:102968641 original size:16 final size:17
Alignment explanation
Indices: 102968616--102968657 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
102968606 TTTTCTATTC
*
102968616 ATTTTCCCCTTTCTT-T
1 ATTTTTCCCTTTCTTCT
102968632 ATTTTTCCC-TTCTTCT
1 ATTTTTCCCTTTCTTCT
*
102968648 TTTTTTCCCT
1 ATTTTTCCCT
102968658 CTCTCTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTTCCCTTTCTTCT
Found at i:102981007 original size:126 final size:132
Alignment explanation
Indices: 102980774--102981144 Score: 540
Period size: 126 Copynumber: 2.8 Consensus size: 132
102980764 TGAATTCACA
* * *
102980774 AGTCTTATCTTCCTGAAGTTGCAAGAAGTAGACTGAAAATTTACAAATCTTATCTTCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAAG-AGCAAAC--AAAATTTACAGATCTTATCTTCATGTATCG
102980839 GCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAG-
63 GCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGC
102980903 CCCCT
128 CCCCT
* *
102980908 AGTCTTATCTTTCTGAAGTTGC-AG-G-AAAC-AAA-TTACAGATCTTATCTCCATGTATCGGCT
1 AGTCTTATCTTCCTGAAGTTGCAAGAGCAAACAAAATTTACAGATCTTATCTTCATGTATCGGCT
* * *
102980968 ATGGAGAAGATCA-AAGATGACGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCC
66 ATGGAGCAGATCAGAA-ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCC
102981032 CCT
130 CCT
* *
102981035 AGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTTACAGATCTTATCTTCATGTATCA
1 AGTCTTATCTTCCTGAAGTTGCAAG-AGCAAAC--AAAATTTACAGATCTTATCTTCATGTATCG
102981100 GCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCG
63 GCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCG
102981145 AATATAGAAC
Statistics
Matches: 213, Mismatches: 13, Indels: 21
0.86 0.05 0.09
Matches are distributed among these distances:
125 2 0.01
126 81 0.38
127 29 0.14
128 2 0.01
130 4 0.02
131 4 0.02
133 2 0.01
134 24 0.11
135 63 0.30
136 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (132 bp):
AGTCTTATCTTCCTGAAGTTGCAAGAGCAAACAAAATTTACAGATCTTATCTTCATGTATCGGCT
ATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCCC
CT
Done.