Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 355 of 427
Found at i:103320664 original size:35 final size:35
Alignment explanation
Indices: 103320633--103320802 Score: 135
Period size: 35 Copynumber: 4.7 Consensus size: 35
103320623 ATTCCATGGA
103320633 AAAG-TGTGAAATGTAGGTATGGTATCATCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** *
103320667 TGAGTTGTGATATGTAGGTATGGTATCATCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** *
103320702 TGAGTTGTGATATGTAGGTATGGTATTATCAAATCCATAC
1 AAAGTTGTGAAATGTAGGTATGG---TATC--ATCCATAC
** ** * ***
103320742 TGAGTTAAGAAATGTAGGTATGGCATTGCCCATAC
1 AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
** *
103320777 CGAGTTGTAAAATGTAGGTATGGTAT
1 AAAGTTGTGAAATGTAGGTATGGTAT
103320803 TTCAATGAGG
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
34 2 0.02
35 79 0.69
37 2 0.02
38 4 0.03
40 28 0.24
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.34
Consensus pattern (35 bp):
AAAGTTGTGAAATGTAGGTATGGTATCATCCATAC
Found at i:103320727 original size:40 final size:40
Alignment explanation
Indices: 103320648--103320764 Score: 140
Period size: 40 Copynumber: 3.0 Consensus size: 40
103320638 GTGAAATGTA
103320648 GGTATGGTATCATCCATACTGAGTTGTGATA--T--GTA-
1 GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
103320683 GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
1 GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
** *
103320723 GGTAT--TATCAAATCCATACTGAGTTAAGAAATGTAGGTAT
1 GGTATGGTATC--ATCCATACTGAGTTGTGATATGTAGGTAT
103320763 GG
1 GG
103320765 CATTGCCCAT
Statistics
Matches: 72, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
35 31 0.43
37 1 0.01
38 4 0.06
39 3 0.04
40 33 0.46
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (40 bp):
GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
Found at i:103320758 original size:75 final size:75
Alignment explanation
Indices: 103320637--103320807 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 75
103320627 CATGGAAAAG
** * * *
103320637 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGATATGTAGGTATGGTATCATC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATCACC
*
103320697 CATACTGAGT
66 CATACCGAGT
* **
103320707 TGTGATATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTGCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATCACC
103320772 CATACCGAGT
66 CATACCGAGT
*
103320782 TGTAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
103320808 TGAGGAAAAC
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
70 17 0.20
73 4 0.05
74 4 0.05
75 60 0.71
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.35
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATCACC
CATACCGAGT
Found at i:103322773 original size:5 final size:5
Alignment explanation
Indices: 103322763--103322795 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
103322753 TTGTGTGTTC
103322763 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
103322796 TCACAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:103327398 original size:2 final size:2
Alignment explanation
Indices: 103327391--103327425 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
103327381 CGCTGAACTC
* *
103327391 GA GA GA GA AA GA GA GA CA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
103327426 CTTGACAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.46, T:0.00
Consensus pattern (2 bp):
GA
Found at i:103328281 original size:19 final size:19
Alignment explanation
Indices: 103328257--103328309 Score: 52
Period size: 23 Copynumber: 2.5 Consensus size: 19
103328247 TTAGCCTAAA
103328257 TTTTTTTCAATTTCTTTAG
1 TTTTTTTCAATTTCTTTAG
*
103328276 TTTTTTCCATTTCATTTCTTTAG
1 TTTTTTTCA----ATTTCTTTAG
103328299 TTATTTTTCAA
1 TT-TTTTTCAA
103328310 ACTTTTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
19 8 0.30
20 1 0.04
23 12 0.44
24 6 0.22
ACGTcount: A:0.17, C:0.13, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTTTTTCAATTTCTTTAG
Found at i:103331119 original size:72 final size:72
Alignment explanation
Indices: 103331038--103331180 Score: 205
Period size: 72 Copynumber: 2.0 Consensus size: 72
103331028 TGCGAGCCTA
* ** * *
103331038 TTGAAGACACCAACTGAAGACAGTAAGCCAAAGTGCGAGCCTGTCAAAGGTGTATGGTTGCAAGC
1 TTGAAGACACCAACTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTATATAGTTGCAAGC
103331103 AGCAAAG
66 AGCAAAG
*** *
103331110 TTGAAGACACCTGTTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTATATAGTTGCGAGC
1 TTGAAGACACCAACTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTATATAGTTGCAAGC
103331175 AGCAAA
66 AGCAAA
103331181 ATGTAAGCCC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.17
Consensus pattern (72 bp):
TTGAAGACACCAACTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTATATAGTTGCAAGC
AGCAAAG
Found at i:103333566 original size:33 final size:33
Alignment explanation
Indices: 103333524--103333591 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
103333514 TTGCAAACAC
103333524 TAAATCTCCAATCTTGTTACAATATTCGAATGT
1 TAAATCTCCAATCTTGTTACAATATTCGAATGT
103333557 TAAATCTCCAATCTTGTTACAATATTCGAATGT
1 TAAATCTCCAATCTTGTTACAATATTCGAATGT
103333590 TA
1 TA
103333592 CCAAAAGGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.40
Consensus pattern (33 bp):
TAAATCTCCAATCTTGTTACAATATTCGAATGT
Found at i:103333592 original size:16 final size:16
Alignment explanation
Indices: 103333538--103333592 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
103333528 TCTCCAATCT
103333538 TGTTACAATATTCGAA
1 TGTTACAATATTCGAA
* *
103333554 TGTTA-AAT-CTCCAA
1 TGTTACAATATTCGAA
103333568 TCTTGTTACAATATTCGAA
1 ---TGTTACAATATTCGAA
103333587 TGTTAC
1 TGTTAC
103333593 CAAAAGGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
14 4 0.13
15 3 0.10
16 11 0.37
17 5 0.17
18 3 0.10
19 4 0.13
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (16 bp):
TGTTACAATATTCGAA
Found at i:103334273 original size:24 final size:24
Alignment explanation
Indices: 103334244--103334300 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
103334234 TTTCTAAAAG
* *
103334244 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATATATTAGTATAATAT
103334268 ATTTAGCATATATTAGTATAATAT
1 ATTTAGCATATATTAGTATAATAT
103334292 A-TTAGCATA
1 ATTTAGCATA
103334301 ATACCTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 8 0.26
24 23 0.74
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (24 bp):
ATTTAGCATATATTAGTATAATAT
Found at i:103334291 original size:13 final size:13
Alignment explanation
Indices: 103334254--103334303 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
103334244 ATTTAGTATT
103334254 TATTAGTATAATA
1 TATTAGTATAATA
**
103334267 TATT--TAGCATA
1 TATTAGTATAATA
103334278 TATTAGTATAATA
1 TATTAGTATAATA
*
103334291 TATTAGCATAATA
1 TATTAGTATAATA
103334304 CCTTAGTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
11 9 0.30
13 21 0.70
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (13 bp):
TATTAGTATAATA
Found at i:103336035 original size:27 final size:28
Alignment explanation
Indices: 103335971--103336039 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 28
103335961 ATAATATATA
103335971 AAACATGATAATAATGCGATAACAGTAT
1 AAACATGATAATAATGCGATAACAGTAT
**
103335999 AAAGCA--ATAATAATGC-AT-ATGGTATT
1 AAA-CATGATAATAATGCGATAACAGTA-T
103336025 AAACATGATAATAAT
1 AAACATGATAATAAT
103336040 AGTAATAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
25 6 0.17
26 6 0.17
27 18 0.51
28 3 0.09
29 2 0.06
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.28
Consensus pattern (28 bp):
AAACATGATAATAATGCGATAACAGTAT
Found at i:103336152 original size:24 final size:24
Alignment explanation
Indices: 103336116--103336180 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 24
103336106 ATATGTACGT
*
103336116 AAAAATAATATAATATAA-AGAAG
1 AAAAATAATATAATATAATAAAAG
103336139 AAAAATAATGATAATATAATAAAAG
1 AAAAATAAT-ATAATATAATAAAAG
103336164 AAAAAT-ATATATATATA
1 AAAAATAATATA-ATATA
103336181 CATATACCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
23 12 0.32
24 16 0.42
25 10 0.26
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (24 bp):
AAAAATAATATAATATAATAAAAG
Found at i:103336324 original size:13 final size:13
Alignment explanation
Indices: 103336293--103336317 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103336283 TGATATTAAA
103336293 AATATATATACAT
1 AATATATATACAT
103336306 AATATATATACA
1 AATATATATACA
103336318 ATGTATACGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
AATATATATACAT
Found at i:103336532 original size:23 final size:24
Alignment explanation
Indices: 103336496--103336561 Score: 86
Period size: 23 Copynumber: 2.8 Consensus size: 24
103336486 ATATACACGA
103336496 AATAGTATATAAAAA-ATATAAC-T
1 AATA-TATATAAAAACATATAACAT
103336519 AATA-ATATTAAAAACATAT-ACAT
1 AATATATA-TAAAAACATATAACAT
103336542 AATATATATAAAAACATATA
1 AATATATATAAAAACATATA
103336562 TATATATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
21 3 0.08
22 8 0.21
23 24 0.63
24 3 0.08
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (24 bp):
AATATATATAAAAACATATAACAT
Found at i:103336735 original size:3 final size:3
Alignment explanation
Indices: 103336721--103336796 Score: 54
Period size: 3 Copynumber: 26.7 Consensus size: 3
103336711 ATAACAGCAG
* * *
103336721 TAA TATA TAA TAA T-A TGA TAA -AA TAA TAA TAA T-G TAT TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
103336764 GAA TGA TAA TAA TAA -AA TAA -GA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
103336797 GTATTATAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
2 8 0.14
3 46 0.81
4 3 0.05
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:103336908 original size:3 final size:3
Alignment explanation
Indices: 103336900--103336950 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
103336890 ATATATGTAT
* *
103336900 ATA ATA ATA ATA ATAA ATA GTA AT- ATAA ATA A-A AAA ATA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
103336945 ATA ATA
1 ATA ATA
103336951 GACAAATTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
2 4 0.10
3 32 0.78
4 5 0.12
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:103342100 original size:37 final size:38
Alignment explanation
Indices: 103342002--103342100 Score: 94
Period size: 37 Copynumber: 2.7 Consensus size: 38
103341992 CAATTGACAA
* * * * *
103342002 TCATTCAGTATAATGGTATGAATTGATTGGTTGTGCTT
1 TCATTCAGTATAACGGTATGATTTGATCGATTGAGCTT
* * * * *
103342040 T-ATTTAGTACAACAGTATAATTTGCTCGATTGAG-TT
1 TCATTCAGTATAACGGTATGATTTGATCGATTGAGCTT
103342076 TCATTCAGTATAACGGTATGATTTG
1 TCATTCAGTATAACGGTATGATTTG
103342101 GTTTGGTAGA
Statistics
Matches: 46, Mismatches: 14, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
36 3 0.07
37 42 0.91
38 1 0.02
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.42
Consensus pattern (38 bp):
TCATTCAGTATAACGGTATGATTTGATCGATTGAGCTT
Found at i:103342781 original size:13 final size:13
Alignment explanation
Indices: 103342763--103342787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103342753 TACACTTACC
103342763 AAATCAAAGCTTT
1 AAATCAAAGCTTT
103342776 AAATCAAAGCTT
1 AAATCAAAGCTT
103342788 GAAACTCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (13 bp):
AAATCAAAGCTTT
Found at i:103344194 original size:24 final size:24
Alignment explanation
Indices: 103344166--103344221 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
103344156 TTTTTAGAAG
* * *
103344166 ATTTAGTATTTCTTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
103344190 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
103344214 A-TTAGCAT
1 ATTTAGCAT
103344222 AAAATATTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 7 0.24
24 22 0.76
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:103344218 original size:13 final size:13
Alignment explanation
Indices: 103344178--103344231 Score: 60
Period size: 13 Copynumber: 4.3 Consensus size: 13
103344168 TTAGTATTTC
*
103344178 TTAGTATAATATA
1 TTAGCATAATATA
103344191 TTTAGCAT--T-TA
1 -TTAGCATAATATA
103344202 TTAGCATAATATA
1 TTAGCATAATATA
*
103344215 TTAGCATAAAATA
1 TTAGCATAATATA
103344228 TTAG
1 TTAG
103344232 TTATTTCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
10 7 0.20
11 2 0.06
12 2 0.06
13 18 0.51
14 6 0.17
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (13 bp):
TTAGCATAATATA
Found at i:103345430 original size:13 final size:13
Alignment explanation
Indices: 103345414--103345447 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
103345404 GGTTTTCTAT
103345414 TTTTGAAT-TTGAA
1 TTTTGAATCTTG-A
103345427 TTTTGAATCTTGA
1 TTTTGAATCTTGA
103345440 TTTTGAAT
1 TTTTGAAT
103345448 AATAATATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 17 0.85
14 3 0.15
ACGTcount: A:0.26, C:0.03, G:0.15, T:0.56
Consensus pattern (13 bp):
TTTTGAATCTTGA
Found at i:103347940 original size:88 final size:88
Alignment explanation
Indices: 103347811--103348060 Score: 362
Period size: 88 Copynumber: 2.8 Consensus size: 88
103347801 GGAATGATGG
*
103347811 TTTTGATTGATATTTAAAAGACAATGAATAGAAATGATAGATCATTGAGGAAATTTAAAAATATG
1 TTTTGATTGATATTAAAAAGACAATGAATAGAAATG-TAGATCATTGAGGAAATTTAAAAATATG
*
103347876 TTCTTTTTCCAAATATGATATC-A
65 TTCTTTTTCCAAATATAATATCGA
* * *
103347899 TTTTGATTGATATTAAAAAGACAATGAATAGAAATAGTAGATCATTGAAGAAAATTAAAAATATT
1 TTTTGATTGATATTAAAAAGACAATGAATAGAAAT-GTAGATCATTGAGGAAATTTAAAAATATG
*
103347964 TTCTTTATT-CAAATATAATATCGC
65 TTCTTT-TTCCAAATATAATATCGA
* * *
103347988 TTTT-ATTGATATTGAAAAGACAATTAATAGAAATGGTAGATCATTGAGGAATTTTAAAAATATG
1 TTTTGATTGATATTAAAAAGACAATGAATAGAAAT-GTAGATCATTGAGGAAATTTAAAAATATG
103348052 TTCTTTTTC
65 TTCTTTTTC
103348061 TACATCTTCA
Statistics
Matches: 145, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
87 2 0.01
88 136 0.94
89 7 0.05
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.38
Consensus pattern (88 bp):
TTTTGATTGATATTAAAAAGACAATGAATAGAAATGTAGATCATTGAGGAAATTTAAAAATATGT
TCTTTTTCCAAATATAATATCGA
Found at i:103349169 original size:13 final size:14
Alignment explanation
Indices: 103349148--103349176 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
103349138 ATAATAGAAG
103349148 TAAATAGAAATATA
1 TAAATAGAAATATA
103349162 TAAA-AGAAATATA
1 TAAATAGAAATATA
103349175 TA
1 TA
103349177 CATACATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (14 bp):
TAAATAGAAATATA
Found at i:103350182 original size:15 final size:16
Alignment explanation
Indices: 103350164--103350202 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
103350154 AAAGAAAGGG
*
103350164 TATATAAATGTA-ATA
1 TATATAAATGCATATA
103350179 TATATAAATGCATATA
1 TATATAAATGCATATA
103350195 TAATATAA
1 T-ATATAA
103350203 TGTTAAGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.52
16 4 0.19
17 6 0.29
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (16 bp):
TATATAAATGCATATA
Found at i:103352002 original size:85 final size:85
Alignment explanation
Indices: 103351855--103352022 Score: 273
Period size: 85 Copynumber: 2.0 Consensus size: 85
103351845 CATAATGACT
* *
103351855 TAAACTTTGACCAAAATATGAAATAGAAAATAATGGATAAACATAAATTTGTAGCTATGGAAGAA
1 TAAACTTTGACCAAAATATGAAATAGAAAACAATGGATAAACATAAATTTGTAGCTACGGAAGAA
103351920 GTTATTTATGATAGAGTTCC
66 GTTATTTATGATAGAGTTCC
** * * *
103351940 TAAACTTTGACCAATTTATGAAATAGAAAACAATGGATAAACATAATTTTTTAGGTACGGAAGAA
1 TAAACTTTGACCAAAATATGAAATAGAAAACAATGGATAAACATAAATTTGTAGCTACGGAAGAA
103352005 GTTATTTATGATAGAGTT
66 GTTATTTATGATAGAGTT
103352023 ATTAATTTTA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (85 bp):
TAAACTTTGACCAAAATATGAAATAGAAAACAATGGATAAACATAAATTTGTAGCTACGGAAGAA
GTTATTTATGATAGAGTTCC
Found at i:103352162 original size:23 final size:23
Alignment explanation
Indices: 103352136--103352197 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 23
103352126 CTGTCCAAAT
103352136 ATTAAATATATAAAAAATTA-ATA
1 ATTAAATATATAAAAAATTAGA-A
* *
103352159 ATT--ATTTATAAAAATTTAGAA
1 ATTAAATATATAAAAAATTAGAA
*
103352180 ACTAAATATATAAAAAAT
1 ATTAAATATATAAAAAAT
103352198 AAAATTTTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 16 0.52
22 1 0.03
23 14 0.45
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
ATTAAATATATAAAAAATTAGAA
Found at i:103356895 original size:234 final size:234
Alignment explanation
Indices: 103356486--103356955 Score: 913
Period size: 234 Copynumber: 2.0 Consensus size: 234
103356476 AAAAGAATTA
103356486 ATCAATTTAGACCTATCAATTTGTGTAATGTGTTGTATAAAATCGTAATGAAGACAATTGTGAAT
1 ATCAATTTAGACCTATCAATTTGTGTAATGTGTTGTATAAAATCGTAATGAAGACAATTGTGAAT
*
103356551 AGGCTTACACCAATGTTGGTTAAGCTTGTTAAACAAAATCAAGTAAGTTTTGTAACAGGTAGGGA
66 AGGCTTACACCAATGTTGGTTAAGCTTGTTAAACAAAATAAAGTAAGTTTTGTAACAGGTAGGGA
103356616 CATTGTGGATAACATTGTGATTGCCTACTAGGCAATACATTCTATAAGAAGTTTTGAGGGTAAAA
131 CATTGTGGATAACATTGTGATTGCCTACTAGGCAATACATTCTATAAGAAGTTTTGAGGGTAAAA
*
103356681 AGTATGATATGGCGTTGAAGATTGACTTAAAAAAAGTTT
196 AGTATGATATGGCGTTGAAGATTGACTTAAAAAAAGCTT
103356720 ATCAATTTAGACCTATCAATTTGTGTAATGTGTTGTATAAAATCGTAATGAAGACAATTGTGAAT
1 ATCAATTTAGACCTATCAATTTGTGTAATGTGTTGTATAAAATCGTAATGAAGACAATTGTGAAT
103356785 AGGCTTACACCAATGTTGGTTAAGCTTGTTAAACAAAATAAAGTAAGTTTTGTAACAGGTAGGGA
66 AGGCTTACACCAATGTTGGTTAAGCTTGTTAAACAAAATAAAGTAAGTTTTGTAACAGGTAGGGA
*
103356850 CATTGTGGATAACATTGTGGTTGCCTACTAGGCAATACATTCTATAAGAAGTTTTGAGGGTAAAA
131 CATTGTGGATAACATTGTGATTGCCTACTAGGCAATACATTCTATAAGAAGTTTTGAGGGTAAAA
103356915 AGTATGATATGGCGTTGAAGATTGACTTAAAAAAAGCTT
196 AGTATGATATGGCGTTGAAGATTGACTTAAAAAAAGCTT
103356954 AT
1 AT
103356956 GATAGAGTCA
Statistics
Matches: 233, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 233 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (234 bp):
ATCAATTTAGACCTATCAATTTGTGTAATGTGTTGTATAAAATCGTAATGAAGACAATTGTGAAT
AGGCTTACACCAATGTTGGTTAAGCTTGTTAAACAAAATAAAGTAAGTTTTGTAACAGGTAGGGA
CATTGTGGATAACATTGTGATTGCCTACTAGGCAATACATTCTATAAGAAGTTTTGAGGGTAAAA
AGTATGATATGGCGTTGAAGATTGACTTAAAAAAAGCTT
Found at i:103357816 original size:26 final size:26
Alignment explanation
Indices: 103357780--103357831 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
103357770 GGTTAAAAAG
103357780 CCTAACTGAGCAAAACATAATCTTTC
1 CCTAACTGAGCAAAACATAATCTTTC
*
103357806 CCTAGCTGAGCAAAACATAATCTTTC
1 CCTAACTGAGCAAAACATAATCTTTC
103357832 TACTTAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (26 bp):
CCTAACTGAGCAAAACATAATCTTTC
Found at i:103360344 original size:27 final size:27
Alignment explanation
Indices: 103360314--103360378 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
103360304 GATCACTGAA
* * *
103360314 CACTTTGCTATGTTTGGCACACTATAT
1 CACTTTGCCATGATTAGCACACTATAT
* *
103360341 CACTTTGCCGTGATTAGCACACTTTAT
1 CACTTTGCCATGATTAGCACACTATAT
103360368 CACTTTGCCAT
1 CACTTTGCCAT
103360379 AGTTCAACTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATGATTAGCACACTATAT
Found at i:103360510 original size:31 final size:31
Alignment explanation
Indices: 103360442--103360646 Score: 313
Period size: 31 Copynumber: 6.5 Consensus size: 31
103360432 AGTGTAGCTA
* *
103360442 AAGCTACCACTTATCACTTG-TCACTTGTAGCCG
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCCG
* *
103360475 AAGCTACCACTATTCACTGATCAGGTAACCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
103360506 AAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
103360537 AAGCTACTACTTTTCACTGATCAGGTAGTCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
103360568 AAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
103360599 AAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
*
103360630 AAGCTACCATTTTTCAC
1 AAGCTACCACTTTTCAC
103360647 ATTGTACACA
Statistics
Matches: 160, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
31 140 0.88
32 2 0.01
33 18 0.11
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCG
Found at i:103360686 original size:32 final size:32
Alignment explanation
Indices: 103360640--103360752 Score: 140
Period size: 33 Copynumber: 3.5 Consensus size: 32
103360630 AAGCTACCAT
*
103360640 TTTTCACA-TTGTACACACAAGGCGTACATTTCC
1 TTTTCA-AGTTGTACACACAA-GTGTACATTTCC
*
103360673 TTTTCAAG-TGTACACACAAAGTGTACGTTTCC
1 TTTTCAAGTTGTACACAC-AAGTGTACATTTCC
*
103360705 TTTTTAAGTTGTACACACACAGTGTACATTTCC
1 TTTTCAAGTTGTACACACA-AGTGTACATTTCC
*
103360738 TTTTCCAGTTGTACA
1 TTTTCAAGTTGTACA
103360753 TTTTAGGTAC
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
32 28 0.40
33 42 0.60
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (32 bp):
TTTTCAAGTTGTACACACAAGTGTACATTTCC
Found at i:103362458 original size:11 final size:11
Alignment explanation
Indices: 103362442--103362494 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
103362432 TATACTAAAT
103362442 AAATAATAATA
1 AAATAATAATA
103362453 AAATAATAAT-
1 AAATAATAATA
* *
103362463 AAATATCTCATCA
1 AAATA-ATAAT-A
*
103362476 AAATATTAATA
1 AAATAATAATA
103362487 AAATAATA
1 AAATAATA
103362495 TTTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATAATAATA
Found at i:103364254 original size:18 final size:19
Alignment explanation
Indices: 103364233--103364274 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
103364223 AATTTTAAAG
*
103364233 TTTTTATATTATTTAATT-
1 TTTTTATATTAATTAATTA
*
103364251 TTTTTATTTTAATTAATTA
1 TTTTTATATTAATTAATTA
103364270 TTTTT
1 TTTTT
103364275 TAGAGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTATATTAATTAATTA
Found at i:103364316 original size:3 final size:3
Alignment explanation
Indices: 103364308--103364338 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
103364298 ATGAATGGGT
103364308 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
103364339 TTTATATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:103365159 original size:3 final size:3
Alignment explanation
Indices: 103365151--103365185 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
103365141 CCATTTTCTC
103365151 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
103365186 GTGATGAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:103367961 original size:19 final size:19
Alignment explanation
Indices: 103367915--103367962 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
103367905 CCCGCAACAG
*
103367915 TAAAGAAAAACTAAAAAAA
1 TAAACAAAAACTAAAAAAA
103367934 -AAACTAAAAACTGAAAAAAA
1 TAAAC-AAAAACT-AAAAAAA
103367954 TAAA-AAAAA
1 TAAACAAAAA
103367963 AATAGGTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 3 0.12
19 12 0.48
20 7 0.28
21 3 0.12
ACGTcount: A:0.79, C:0.06, G:0.04, T:0.10
Consensus pattern (19 bp):
TAAACAAAAACTAAAAAAA
Found at i:103368916 original size:30 final size:30
Alignment explanation
Indices: 103368864--103368944 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
103368854 AATCCATGTG
* ** *
103368864 TCCTGGTCGAGCTCCATTATATGTTGATCC
1 TCCTGGTCGAGCTCTACCATATGTTCATCC
*
103368894 TCCTGGTCGAGCTCTGCCATATGTTCATCC
1 TCCTGGTCGAGCTCTACCATATGTTCATCC
* *
103368924 T-CTAGGTTGAGCTCTATCATA
1 TCCT-GGTCGAGCTCTACCATA
103368945 AGTTGACTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 2 0.05
30 40 0.95
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (30 bp):
TCCTGGTCGAGCTCTACCATATGTTCATCC
Found at i:103373504 original size:21 final size:21
Alignment explanation
Indices: 103373466--103373506 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
103373456 ATGAACCCAC
*
103373466 AATCTTGAACCTTGAACTTTA
1 AATCTTGAACCTTAAACTTTA
103373487 AATCTTGAA-CTTCAAACTTT
1 AATCTTGAACCTT-AAACTTT
103373507 GAATTCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (21 bp):
AATCTTGAACCTTAAACTTTA
Found at i:103373530 original size:28 final size:28
Alignment explanation
Indices: 103373477--103373532 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
103373467 ATCTTGAACC
* **
103373477 TTGAACTTTAAATCTTGAACTTCAAACT
1 TTGAACTTTAAATATTGAACCCCAAACT
103373505 TTGAA-TTCTAAATATTGAACCCCAAACT
1 TTGAACTT-TAAATATTGAACCCCAAACT
103373533 CGAATCAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.36
Consensus pattern (28 bp):
TTGAACTTTAAATATTGAACCCCAAACT
Found at i:103373586 original size:21 final size:21
Alignment explanation
Indices: 103373561--103373606 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
103373551 TTAGGGTTTT
103373561 GATTTGGAGTTCAAGGTTTGA
1 GATTTGGAGTTCAAGGTTTGA
* * *
103373582 GATTTGGTGTTTAAGGTTTGG
1 GATTTGGAGTTCAAGGTTTGA
103373603 GATT
1 GATT
103373607 CAAGATTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.43
Consensus pattern (21 bp):
GATTTGGAGTTCAAGGTTTGA
Found at i:103373687 original size:20 final size:20
Alignment explanation
Indices: 103373649--103373688 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
103373639 TTGGGGTTTT
* * *
103373649 GAGTTTAAGGTTTACGATTC
1 GAGTTCAAGGTTCAAGATTC
103373669 GAGTTCAAGGTTCAAGATTC
1 GAGTTCAAGGTTCAAGATTC
103373689 ATGGTTCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (20 bp):
GAGTTCAAGGTTCAAGATTC
Found at i:103374133 original size:29 final size:29
Alignment explanation
Indices: 103374095--103374171 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
103374085 TTTACCTCAA
*
103374095 GTTACATTTTAGTCATTTATATTTGAAAT
1 GTTACGTTTTAGTCATTTATATTTGAAAT
* *
103374124 GTTATGTTTTAGTCACTTATATTTGAAAT
1 GTTACGTTTTAGTCATTTATATTTGAAAT
*
103374153 GTTACGTTTTAGTCTTTTA
1 GTTACGTTTTAGTCATTTA
103374172 CATTATCGTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (29 bp):
GTTACGTTTTAGTCATTTATATTTGAAAT
Found at i:103377164 original size:17 final size:17
Alignment explanation
Indices: 103377142--103377175 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
103377132 TTGTACTTTA
103377142 TCAGACAGTAGGTAGAT
1 TCAGACAGTAGGTAGAT
103377159 TCAGACAGTAGGTAGAT
1 TCAGACAGTAGGTAGAT
103377176 AATATGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
TCAGACAGTAGGTAGAT
Found at i:103378160 original size:28 final size:29
Alignment explanation
Indices: 103378129--103378185 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
103378119 TTTTTTAATA
*
103378129 ATTTTAATGATTTTT-AATTTTAAAAAAT
1 ATTTTAATCATTTTTAAATTTTAAAAAAT
**
103378157 ATTTTTTTCATTTTTAAAATTTTAAAAAA
1 ATTTTAATCATTTTT-AAATTTTAAAAAA
103378186 CTATCTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.50
30 12 0.50
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (29 bp):
ATTTTAATCATTTTTAAATTTTAAAAAAT
Found at i:103380627 original size:19 final size:19
Alignment explanation
Indices: 103380555--103380627 Score: 59
Period size: 18 Copynumber: 4.1 Consensus size: 19
103380545 TGAGTAATGT
*
103380555 CAAATTTAAAT-AT-TTAA
1 CAAATATAAATAATATTAA
* *
103380572 AAAATA-AAATAATAATAA
1 CAAATATAAATAATATTAA
103380590 -ATAA-ATAAATAGATA-TAA
1 CA-AATATAAATA-ATATTAA
103380608 CAAATATAAATAATATTAA
1 CAAATATAAATAATATTAA
103380627 C
1 C
103380628 TTTAGATATT
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
16 4 0.09
17 8 0.18
18 18 0.40
19 15 0.33
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.30
Consensus pattern (19 bp):
CAAATATAAATAATATTAA
Found at i:103383146 original size:9 final size:9
Alignment explanation
Indices: 103383132--103383173 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
103383122 CTTTCTAAAG
*
103383132 TCTCAACTC
1 TCTCAATTC
103383141 TCTCAATTC
1 TCTCAATTC
*
103383150 TCACAATTC
1 TCTCAATTC
*
103383159 TCTCAATTT
1 TCTCAATTC
103383168 TCTCAA
1 TCTCAA
103383174 GTTTTATTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.40
Consensus pattern (9 bp):
TCTCAATTC
Found at i:103386428 original size:19 final size:19
Alignment explanation
Indices: 103386406--103386445 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
103386396 TGAAGTCTCG
*
103386406 AAAAAAACAA-AAGTAAGAT
1 AAAAAAA-AAGAAGTAAAAT
103386425 AAAAAAAAAGAAGTAAAAT
1 AAAAAAAAAGAAGTAAAAT
103386444 AA
1 AA
103386446 TGTATATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.78, C:0.03, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAAAAAAAGAAGTAAAAT
Found at i:103388153 original size:75 final size:75
Alignment explanation
Indices: 103388030--103388183 Score: 281
Period size: 75 Copynumber: 2.1 Consensus size: 75
103388020 AAAATTATAT
103388030 TTATTTTGTTGACTTAGTGACATTATAGACTTCACAGTGATTTAGACATTTCTAGTAATAAATGT
1 TTATTTTGTTGACTTAGTGACATTATAGACTTCACAGTGATTTAGACATTTCTAGTAATAAATGT
*
103388095 TACTAAGTAC
66 TACAAAGTAC
**
103388105 TTATTTTGTTGACTTAGTGTTATTATAGACTTCACAGTGATTTAGACATTTCTAGTAATAAATGT
1 TTATTTTGTTGACTTAGTGACATTATAGACTTCACAGTGATTTAGACATTTCTAGTAATAAATGT
103388170 TACAAAGTAC
66 TACAAAGTAC
103388180 TTAT
1 TTAT
103388184 ATGTGGATAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (75 bp):
TTATTTTGTTGACTTAGTGACATTATAGACTTCACAGTGATTTAGACATTTCTAGTAATAAATGT
TACAAAGTAC
Found at i:103389829 original size:22 final size:22
Alignment explanation
Indices: 103389804--103389848 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
103389794 CACTGCTCTG
103389804 CACCGACGGGACTCCTCACTGC
1 CACCGACGGGACTCCTCACTGC
*
103389826 CACCGACGGGACTGCTCACTGC
1 CACCGACGGGACTCCTCACTGC
103389848 C
1 C
103389849 TTTTCTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.44, G:0.24, T:0.13
Consensus pattern (22 bp):
CACCGACGGGACTCCTCACTGC
Found at i:103390499 original size:14 final size:14
Alignment explanation
Indices: 103390480--103390508 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
103390470 AGCTTAATAG
103390480 TATATTTTAAAAAA
1 TATATTTTAAAAAA
103390494 TATATTTTAAAAAA
1 TATATTTTAAAAAA
103390508 T
1 T
103390509 CCAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATTTTAAAAAA
Found at i:103390627 original size:13 final size:13
Alignment explanation
Indices: 103390611--103390663 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
103390601 AAATAATAAA
103390611 AAAATAAAATATG
1 AAAATAAAATATG
* *
103390624 AAAATAGCATATTTTG
1 AAAATA--A-AATATG
*
103390640 AAAATAAAATTTG
1 AAAATAAAATATG
103390653 AAAATAAAATA
1 AAAATAAAATA
103390664 AAAAAAAACG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 21 0.64
14 1 0.03
15 1 0.03
16 10 0.30
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (13 bp):
AAAATAAAATATG
Found at i:103390702 original size:144 final size:144
Alignment explanation
Indices: 103390504--103391661 Score: 1662
Period size: 144 Copynumber: 8.1 Consensus size: 144
103390494 TATATTTTAA
* * *
103390504 AAAATCCAAAAATAAAAT--AAAAAAAGGCCAAAATCTGAGTTTTTTACTAAATTAATATAAATA
1 AAAATCCGAAAATAAAATAAAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
* * * * *
103390567 TACTAAAATAATACATATGAAATATTATGTACTAAAATAATAAAAAAATAAAATATGAAAATAGC
66 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGT
*
103390632 ATATTTT-GAAAAT
131 ATATTTTAAAAAAT
**
103390645 AAAATTTGAAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAA
1 AAAATCCGAAAATAAAATAAAAAAAAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAA
*
103390710 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAG
65 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAG
*
103390775 TGTATTTTAAAAAAT
130 TATATTTTAAAAAAT
* * *
103390790 AAAATCCGAAAACAAAAT---AAAAAAGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAA
1 AAAATCCGAAAATAAAATAAAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
* * *
103390852 AACTAAAATAATACA--TGAAACATTATGTACTAAAATAAT-ATAAAA-AAAATATGAAAATAAT
66 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGT
103390913 ATATTTTAAAAAAT
131 ATATTTTAAAAAAT
* * * *
103390927 AAAATCTGAAAAT--AA-AAATAAAAGGGCCAAAATCAGA-TTTTTTTCTAAA-TAATAT-AAAA
1 AAAATCCGAAAATAAAATAAAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
103390986 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAA-AAAATACGAAAATAG
66 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAATAG
103391050 TATATTTT-AAAAAT
130 TATATTTTAAAAAAT
* * * * *
103391064 AAAATCTGAAAACAAAATAAATAAAAAGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAA
1 AAAATCCGAAAATAAAATAAAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAA
*
103391129 AAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAG
65 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAG
103391192 TATATTTTAAAAAAT
130 TATATTTTAAAAAAT
* * *
103391207 AAAATCCAAAAATAAAA-AATAAAAAAGGCCAAAATCAGAGTTTTTTTTCTAAATTAATAT-AAA
1 AAAATCCGAAAATAAAATAAAAAAAAAGGCCAAAATCAGAG-TTTTTTACTAAATTAATATAAAA
103391270 AAA-TAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAAT
65 AAACTAAAATAATACATTTGAAACATTATGTACTAAAAT-A-ATAAAAAAATAAAATACGAAAAT
103391334 AGTATATTTTAAAAAAT
128 AGTATATTTTAAAAAAT
* *
103391351 AAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAGTATAAA
1 AAAATCCGAAAATAAAATAAAAAA-AAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
*
103391416 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAA-A
64 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATA
* *
103391480 ATATATTTTAAAAAGT
129 GTATATTTTAAAAAAT
*
103391496 AAAATCCGAAAATAAAATAAAAAAACAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAA
1 AAAATCCGAAAATAAAAT-AAAAAA-AAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAA
* *
103391561 AAAATGCAAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAA
63 AAAA-ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAA
*
103391626 ATAATATATTTTAAAAAAT
126 ATAGTATATTTTAAAAAAT
103391645 AAAATCCGAAAATAAAA
1 AAAATCCGAAAATAAAA
103391662 AAATACCAAA
Statistics
Matches: 921, Mismatches: 62, Indels: 60
0.88 0.06 0.06
Matches are distributed among these distances:
134 19 0.02
135 8 0.01
136 34 0.04
137 72 0.08
138 30 0.03
139 26 0.03
140 32 0.03
141 87 0.09
142 101 0.11
143 45 0.05
144 175 0.19
145 58 0.06
146 88 0.10
147 60 0.07
148 53 0.06
149 33 0.04
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (144 bp):
AAAATCCGAAAATAAAATAAAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGT
ATATTTTAAAAAAT
Found at i:103398096 original size:22 final size:22
Alignment explanation
Indices: 103398070--103398111 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
103398060 AAAATTACCT
103398070 TTTCTTTTCTTTCT-TCTTCTCC
1 TTTC-TTTCTTTCTATCTTCTCC
103398092 TTTCTTTCTTTCTATCTTCT
1 TTTCTTTCTTTCTATCTTCT
103398112 TCTTCTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTCTTTCTATCTTCTCC
Found at i:103398232 original size:27 final size:27
Alignment explanation
Indices: 103398202--103398259 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
103398192 GAGAAAGGCA
103398202 CCACTGGTGCCGCCTGTGGGGCACCCT
1 CCACTGGTGCCGCCTGTGGGGCACCCT
*
103398229 CCACTGGTGCCGCCTGTGGGGTACCCT
1 CCACTGGTGCCGCCTGTGGGGCACCCT
103398256 CCAC
1 CCAC
103398260 CCTTATTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.09, C:0.41, G:0.31, T:0.19
Consensus pattern (27 bp):
CCACTGGTGCCGCCTGTGGGGCACCCT
Found at i:103399884 original size:15 final size:17
Alignment explanation
Indices: 103399864--103399898 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
103399854 ATTATATTAG
103399864 TAAAATTAT-TTTA-TT
1 TAAAATTATCTTTAGTT
103399879 TAAAATTATCTTTAGTT
1 TAAAATTATCTTTAGTT
103399896 TAA
1 TAA
103399899 TTACTAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 4 0.22
17 5 0.28
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (17 bp):
TAAAATTATCTTTAGTT
Found at i:103401425 original size:22 final size:23
Alignment explanation
Indices: 103401399--103401449 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
103401389 GATATATCAT
103401399 CAGTAGAT-CTGAGGATAAACTG-
1 CAGTAGATAC-GAGGATAAACTGC
103401421 CAGTAGATACGAGGATAAACTGC
1 CAGTAGATACGAGGATAAACTGC
103401444 CAGTAG
1 CAGTAG
103401450 CACTTCCTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 20 0.74
23 7 0.26
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.20
Consensus pattern (23 bp):
CAGTAGATACGAGGATAAACTGC
Found at i:103408215 original size:17 final size:18
Alignment explanation
Indices: 103408182--103408214 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
103408172 TTATAAATAT
103408182 ATTACTTTTAAACTTTTA
1 ATTACTTTTAAACTTTTA
103408200 ATTA-TTTT-AACTTTT
1 ATTACTTTTAAACTTTT
103408215 TTTATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTACTTTTAAACTTTTA
Found at i:103408290 original size:22 final size:23
Alignment explanation
Indices: 103408265--103408326 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
103408255 ATTTTTTTTA
103408265 AATTTT-ATTTTTTATAATATAT
1 AATTTTCATTTTTTATAATATAT
* * *
103408287 AATTTTGAATTTTTAT-ATATCT
1 AATTTTCATTTTTTATAATATAT
*
103408309 ATATTTTCATTGTTTATA
1 A-ATTTTCATTTTTTATA
103408327 TTTTTAATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 12 0.38
23 20 0.62
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (23 bp):
AATTTTCATTTTTTATAATATAT
Found at i:103411362 original size:18 final size:18
Alignment explanation
Indices: 103411339--103411373 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
103411329 TGACGAGGGC
103411339 TTTAATTAAATTTTTTAA
1 TTTAATTAAATTTTTTAA
*
103411357 TTTAATTTAATTTTTTA
1 TTTAATTAAATTTTTTA
103411374 TTTTTTAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTAATTAAATTTTTTAA
Found at i:103415205 original size:8 final size:9
Alignment explanation
Indices: 103415180--103415204 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
103415170 AGCTGGTGAG
103415180 CCCCCCCCA
1 CCCCCCCCA
103415189 CCCCCCCCA
1 CCCCCCCCA
103415198 CCCCCCC
1 CCCCCCC
103415205 AAAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.92, G:0.00, T:0.00
Consensus pattern (9 bp):
CCCCCCCCA
Found at i:103423324 original size:17 final size:17
Alignment explanation
Indices: 103423302--103423334 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
103423292 TATATATATA
103423302 TATAAATGTATCCATGC
1 TATAAATGTATCCATGC
103423319 TATAAATGTATCCATG
1 TATAAATGTATCCATG
103423335 TCATTAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (17 bp):
TATAAATGTATCCATGC
Found at i:103433425 original size:25 final size:23
Alignment explanation
Indices: 103433397--103433450 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
103433387 GTACATTTGT
*
103433397 ATATATATGATTAAATAT-TTAATA
1 ATATATA-GAATAAATATATT-ATA
*
103433421 GATATTTAGAATAAATATATTATA
1 -ATATATAGAATAAATATATTATA
103433445 ATATAT
1 ATATAT
103433451 GTTAAGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 5 0.20
24 12 0.48
25 8 0.32
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (23 bp):
ATATATAGAATAAATATATTATA
Found at i:103433534 original size:20 final size:19
Alignment explanation
Indices: 103433497--103433534 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
103433487 TATATGGTAT
103433497 AAAAGAAAAACAAAAGAAA
1 AAAAGAAAAACAAAAGAAA
*
103433516 AAAAGAAAGAACAACAGAA
1 AAAAGAAA-AACAAAAGAA
103433535 GCCATTCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.79, C:0.08, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAACAAAAGAAA
Found at i:103435125 original size:13 final size:13
Alignment explanation
Indices: 103435107--103435139 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
103435097 TATGAAAAAG
103435107 TGAAATTATGAAT
1 TGAAATTATGAAT
103435120 TGAAA-TATGAAT
1 TGAAATTATGAAT
103435132 TGAAATTA
1 TGAAATTA
103435140 AGGTCTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (13 bp):
TGAAATTATGAAT
Found at i:103435886 original size:23 final size:23
Alignment explanation
Indices: 103435860--103435903 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
103435850 CGCAAAAATA
* *
103435860 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
103435883 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
103435904 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:103437180 original size:48 final size:48
Alignment explanation
Indices: 103437116--103437263 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
103437106 TTGATGTACA
*
103437116 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
103437164 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
103437212 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
103437260 AGAT
1 AGAT
103437264 GTGTATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:103439262 original size:40 final size:39
Alignment explanation
Indices: 103439207--103439325 Score: 159
Period size: 40 Copynumber: 3.0 Consensus size: 39
103439197 AAGTTCAGTA
103439207 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
103439247 TGTTATATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTGG
1 TGTTATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTGG
* * * *
103439287 TGATGTATCCGAACTAAGCCCCGAAG-GCATTCGTGCTGG
1 TGTTATATCCG-GCTAAGTCCCGAAGAGCATTCGTGCTGG
103439326 GACAAAATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
39 14 0.20
40 57 0.80
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (39 bp):
TGTTATATCCGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:103439641 original size:28 final size:28
Alignment explanation
Indices: 103439584--103439651 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
103439574 AATATGAGGA
* *
103439584 ACTATGTGTGCGAGTTCTTCAATCGAGC
1 ACTATGTGTGCGAGATCGTCAATCGAGC
* *
103439612 ACTATGTGTGCGAGATCAGTCAGT-GGGC
1 ACTATGTGTGCGAGATC-GTCAATCGAGC
*
103439640 ACTGTGTGTGCG
1 ACTATGTGTGCG
103439652 GATTTTGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 30 0.88
29 4 0.12
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.29
Consensus pattern (28 bp):
ACTATGTGTGCGAGATCGTCAATCGAGC
Found at i:103440257 original size:23 final size:23
Alignment explanation
Indices: 103440231--103440274 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
103440221 TACAAAAATA
* *
103440231 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
103440254 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
103440275 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:103441548 original size:48 final size:48
Alignment explanation
Indices: 103441484--103441631 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
103441474 TTGATGTACA
*
103441484 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
103441532 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
103441580 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
103441628 AGAT
1 AGAT
103441632 GTGTATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:103444660 original size:29 final size:27
Alignment explanation
Indices: 103444603--103444662 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
103444593 GTTTGAATTG
*
103444603 AAATTAAATAATTAAAATATATTTATTT
1 AAATTAAAT-ATTAAAAAATATTTATTT
103444631 AAATTAAAT-TTAAATAAATATGTTAGTTT
1 AAATTAAATATTAAA-AAATAT-TTA-TTT
103444660 AAA
1 AAA
103444663 AGTAAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 5 0.18
27 5 0.18
28 12 0.43
29 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (27 bp):
AAATTAAATATTAAAAAATATTTATTT
Found at i:103447715 original size:12 final size:12
Alignment explanation
Indices: 103447698--103447722 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103447688 CCACCCTGCA
103447698 AACACATGATTT
1 AACACATGATTT
103447710 AACACATGATTT
1 AACACATGATTT
103447722 A
1 A
103447723 GGGGTAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
AACACATGATTT
Found at i:103456368 original size:15 final size:17
Alignment explanation
Indices: 103456337--103456372 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
103456327 ACTATCTAAT
103456337 GGAAAAACAACAAAAAA
1 GGAAAAACAACAAAAAA
103456354 GGAAAAA-AA-AAAAAA
1 GGAAAAACAACAAAAAA
103456369 GGAA
1 GGAA
103456373 TTAAGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.53
16 2 0.11
17 7 0.37
ACGTcount: A:0.78, C:0.06, G:0.17, T:0.00
Consensus pattern (17 bp):
GGAAAAACAACAAAAAA
Found at i:103460104 original size:31 final size:31
Alignment explanation
Indices: 103460059--103460125 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
103460049 TGAAAGTGAT
* *
103460059 AGTATTTTTTAATATTATACATCTATAATAG
1 AGTAATTTTCAATATTATACATCTATAATAG
*
103460090 AGTAATTTTCAATATTATACATCTATAATGG
1 AGTAATTTTCAATATTATACATCTATAATAG
103460121 AGTAA
1 AGTAA
103460126 GACGTGAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.43
Consensus pattern (31 bp):
AGTAATTTTCAATATTATACATCTATAATAG
Found at i:103460220 original size:29 final size:29
Alignment explanation
Indices: 103460178--103460235 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
103460168 CCTCCCACTT
103460178 CATTGCTTATCCTTAGACGAAAGGTCTTA
1 CATTGCTTATCCTTAGACGAAAGGTCTTA
103460207 CATTGCTTATCCTTAGACGAAAGGTCTTA
1 CATTGCTTATCCTTAGACGAAAGGTCTTA
103460236 AGCAGCATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (29 bp):
CATTGCTTATCCTTAGACGAAAGGTCTTA
Found at i:103469427 original size:25 final size:23
Alignment explanation
Indices: 103469398--103469478 Score: 85
Period size: 25 Copynumber: 3.4 Consensus size: 23
103469388 AATAAAGGGG
103469398 TTTAAAATAAGGTATATAAAATAA
1 TTTAAAATAA-GTATATAAAATAA
*
103469422 TTTTAAAATAAGTAATATATAAGTCAA
1 -TTTAAAATAAGT-ATATA-AAAT-AA
*
103469449 TTTAAAATAA-TATATAATA-AA
1 TTTAAAATAAGTATATAAAATAA
103469470 TTTAAAATA
1 TTTAAAATA
103469479 TATAATATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 11 0.22
23 1 0.02
24 7 0.14
25 16 0.32
26 13 0.26
27 2 0.04
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.37
Consensus pattern (23 bp):
TTTAAAATAAGTATATAAAATAA
Found at i:103469481 original size:20 final size:22
Alignment explanation
Indices: 103469434--103469482 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
103469424 TTAAAATAAG
*
103469434 TAATATATAAGTCAATTTAAAA
1 TAATATATAAGTAAATTTAAAA
103469456 TAATATATAA-TAAATTTAAAA
1 TAATATATAAGTAAATTTAAAA
103469477 T-ATATA
1 TAATATA
103469483 ATATGTAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 5 0.19
21 11 0.42
22 10 0.38
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (22 bp):
TAATATATAAGTAAATTTAAAA
Found at i:103469503 original size:47 final size:47
Alignment explanation
Indices: 103469411--103469504 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 47
103469401 AAAATAAGGT
* * *
103469411 ATATAAAATAATTTTAAAATAAGTAATATATAAGTCAATTTAAAATA
1 ATATAAAATAAATTTAAAATAAGTAATATATAAGACAATTAAAAATA
* * *
103469458 ATATATAATAAATTTAAAATATA-TAATATGTAAGAGAATTAAAAATA
1 ATATAAAATAAATTTAAAATA-AGTAATATATAAGACAATTAAAAATA
103469505 GACAATATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
47 39 0.98
48 1 0.03
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (47 bp):
ATATAAAATAAATTTAAAATAAGTAATATATAAGACAATTAAAAATA
Found at i:103469628 original size:25 final size:24
Alignment explanation
Indices: 103469561--103469630 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
103469551 AAAAAGGGTT
* *
103469561 ATTTGAAATACATAATATACAATA
1 ATTTGAAATAAATAATATAAAATA
* * *
103469585 ACTTAAGAATAAACAATATAAAATA
1 ATTTGA-AATAAATAATATAAAATA
103469610 ATTTGAAATAAATATATATAA
1 ATTTGAAATAAATA-ATATAA
103469631 CAAATCAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 11 0.31
25 25 0.69
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (24 bp):
ATTTGAAATAAATAATATAAAATA
Found at i:103471708 original size:88 final size:89
Alignment explanation
Indices: 103471588--103471759 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 89
103471578 ATGAGATTTG
* * * *
103471588 CTATCTTTAATCTACTCCACTCCAACCTCAGGGAGAAAAGA-CT-T-GCACTTTATCCTACCCCA
1 CTATCTTCAATCTACTCCACTACAACCTCAGGGAGAAAAGATCTGTAAC-CTTAAT-CTACCCCA
*
103471650 CTGCAACTTCAGGGGGATAAGGTTTA
64 CTGCAACTTCAGGGAGATAAGGTTTA
* * * * **
103471676 CTATCTTCGATCTATTCCACTACAACTTCAGGGAGATAAGATCTGTAACCTTAATCTATTCCACT
1 CTATCTTCAATCTACTCCACTACAACCTCAGGGAGAAAAGATCTGTAACCTTAATCTACCCCACT
103471741 GCAACTTCAGGGAGATAAG
66 GCAACTTCAGGGAGATAAG
103471760 ATTCGTGGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
88 35 0.50
89 28 0.40
90 6 0.09
91 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (89 bp):
CTATCTTCAATCTACTCCACTACAACCTCAGGGAGAAAAGATCTGTAACCTTAATCTACCCCACT
GCAACTTCAGGGAGATAAGGTTTA
Found at i:103471776 original size:44 final size:44
Alignment explanation
Indices: 103471647--103471808 Score: 152
Period size: 44 Copynumber: 3.7 Consensus size: 44
103471637 TTATCCTACC
* * * *
103471647 CCACTGCAACTTCAGGGGGATAAGGTTTAC-TATCTTCGATCTATT
1 CCACTGCAACTTCAGGGAGATAA-GATT-CGTACCTTCAATCTATT
*
103471692 CCACTACAACTTCAGGGAGATAAGA-TCTGTAACCTT-AATCTATT
1 CCACTGCAACTTCAGGGAGATAAGATTC-GT-ACCTTCAATCTATT
** *
103471736 CCACTGCAACTTCAGGGAGATAAGATTCGTGGCTTCAATCTGCTT
1 CCACTGCAACTTCAGGGAGATAAGATTCGTACCTTCAATCT-ATT
* * *
103471781 -CACTGCAACTTTAGGGAGACAATATTCG
1 CCACTGCAACTTCAGGGAGATAAGATTCG
103471809 CCATGGTGAT
Statistics
Matches: 99, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 65 0.66
45 29 0.29
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTCGTACCTTCAATCTATT
Found at i:103473356 original size:10 final size:10
Alignment explanation
Indices: 103473340--103473398 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
103473330 AATCTAAATT
103473340 AATAAAACAA
1 AATAAAACAA
* *
103473350 AAGAAAATAAA
1 AATAAAA-CAA
103473361 AATAAATA-AA
1 AATAAA-ACAA
103473371 TAATAAAACAA
1 -AATAAAACAA
*
103473382 AACAAAACAA
1 AATAAAACAA
103473392 AATAAAA
1 AATAAAA
103473399 TCTTTCTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 24 0.60
11 15 0.38
12 1 0.03
ACGTcount: A:0.80, C:0.07, G:0.02, T:0.12
Consensus pattern (10 bp):
AATAAAACAA
Found at i:103473380 original size:32 final size:32
Alignment explanation
Indices: 103473334--103473397 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
103473324 TAACCTAATC
*
103473334 TAAATTAATAAAACAAAAGAAAATAAAAATAAA
1 TAAATTAATAAAACAAAACAAAA-AAAAATAAA
*
103473367 TAAA-TAATAAAACAAAACAAAACAAAATAAA
1 TAAATTAATAAAACAAAACAAAAAAAAATAAA
103473398 ATCTTTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 8 0.28
32 17 0.59
33 4 0.14
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.16
Consensus pattern (32 bp):
TAAATTAATAAAACAAAACAAAAAAAAATAAA
Found at i:103479827 original size:9 final size:9
Alignment explanation
Indices: 103479813--103479845 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
103479803 TTGAGTTGAT
103479813 TCGATTAAC
1 TCGATTAAC
*
103479822 TCGATTAAT
1 TCGATTAAC
103479831 TCGATTAAC
1 TCGATTAAC
103479840 TCGATT
1 TCGATT
103479846 CGAATAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (9 bp):
TCGATTAAC
Found at i:103479834 original size:18 final size:18
Alignment explanation
Indices: 103479811--103479845 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
103479801 ATTTGAGTTG
103479811 ATTCGATTAACTCGATTA
1 ATTCGATTAACTCGATTA
103479829 ATTCGATTAACTCGATT
1 ATTCGATTAACTCGATT
103479846 CGAATAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTCGATTAACTCGATTA
Found at i:103480859 original size:28 final size:28
Alignment explanation
Indices: 103480817--103480881 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
103480807 CTAGTTTGGT
*
103480817 TCCATGCTCCATTTCTCTCTTTGGTTCA
1 TCCATGCTCCATTTCTCTCTTCGGTTCA
*
103480845 TCTATGCTCTC-TTTCTCTCTTCGGTTCA
1 TCCATGCTC-CATTTCTCTCTTCGGTTCA
103480873 TCCATGCTC
1 TCCATGCTC
103480882 GACTTCCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.09, C:0.34, G:0.11, T:0.46
Consensus pattern (28 bp):
TCCATGCTCCATTTCTCTCTTCGGTTCA
Found at i:103481072 original size:48 final size:49
Alignment explanation
Indices: 103481017--103481115 Score: 164
Period size: 48 Copynumber: 2.0 Consensus size: 49
103481007 AAATTTAAAA
*
103481017 AAATATTTTGAATATAAGGAATTCAATTTATCTTTAGA-TTTGGTTAAG
1 AAATATTTTGAATATAAGGAATTCAATTTATCTTTAGATTTTGATTAAG
* *
103481065 AAATATTTTGAATATAAGGAATTTAATTTATGTTTAGATTTTGATTAAG
1 AAATATTTTGAATATAAGGAATTCAATTTATCTTTAGATTTTGATTAAG
103481114 AA
1 AA
103481116 TGATTGATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
48 36 0.77
49 11 0.23
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.44
Consensus pattern (49 bp):
AAATATTTTGAATATAAGGAATTCAATTTATCTTTAGATTTTGATTAAG
Found at i:103482736 original size:7 final size:7
Alignment explanation
Indices: 103482726--103482778 Score: 106
Period size: 7 Copynumber: 7.6 Consensus size: 7
103482716 CCACCCCAAA
103482726 CCCACTT
1 CCCACTT
103482733 CCCACTT
1 CCCACTT
103482740 CCCACTT
1 CCCACTT
103482747 CCCACTT
1 CCCACTT
103482754 CCCACTT
1 CCCACTT
103482761 CCCACTT
1 CCCACTT
103482768 CCCACTT
1 CCCACTT
103482775 CCCA
1 CCCA
103482779 AATCTGTAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.15, C:0.58, G:0.00, T:0.26
Consensus pattern (7 bp):
CCCACTT
Found at i:103488947 original size:39 final size:39
Alignment explanation
Indices: 103488904--103489082 Score: 268
Period size: 39 Copynumber: 4.6 Consensus size: 39
103488894 GCTCTGATGA
* *
103488904 GCTTCAGTTATCCTTCGGGCTTCCGTTTAGCACTGGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
**
103488943 GCTTCAGTTAGCCTTCGGGCTTTTGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
103488982 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
103489021 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
103489060 GCTTCAGCTAGACTTCTGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
103489083 AAATCACGAT
Statistics
Matches: 126, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:103500427 original size:121 final size:120
Alignment explanation
Indices: 103500266--103500498 Score: 358
Period size: 121 Copynumber: 1.9 Consensus size: 120
103500256 TATACACAAT
* * * *
103500266 ATTTAAAGATGGAAAGCTCAAATTTTAATTCACATTCTTTGAAGGCTCAAATTGATGAGGTGTTT
1 ATTTAAAGATGAAAAGCTCAAATTTTAAGTCAAATTCTTTGAAGACTCAAATTGATGAGGTGTTT
* * * * *
103500331 TCAAATTTTAATATGGATAGAGAAAATGAGGTTCATTAAGAAAGTCTTGGAACTA
66 TCAAAATTTAATATGGATAGAGAAAATGAAGTTAATCAAAAAAGTCTTGGAACTA
* *
103500386 ATTTAAAAGATGAAAAGCTCAAATTTTAAGTCAAATTCTTTGTAGACTGAAATTGATGAGGTGTT
1 ATTT-AAAGATGAAAAGCTCAAATTTTAAGTCAAATTCTTTGAAGACTCAAATTGATGAGGTGTT
103500451 TTCAAAATTTAATATGGATAGAGAAAATGAAGTTAATCAAAAAAGTCT
65 TTCAAAATTTAATATGGATAGAGAAAATGAAGTTAATCAAAAAAGTCT
103500499 AAGAACGAAT
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
120 4 0.04
121 97 0.96
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (120 bp):
ATTTAAAGATGAAAAGCTCAAATTTTAAGTCAAATTCTTTGAAGACTCAAATTGATGAGGTGTTT
TCAAAATTTAATATGGATAGAGAAAATGAAGTTAATCAAAAAAGTCTTGGAACTA
Found at i:103501358 original size:10 final size:10
Alignment explanation
Indices: 103501335--103501377 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
103501325 TGTTCAATTC
**
103501335 TTTCCATGTT
1 TTTCCATGCA
103501345 TTTCCATGCA
1 TTTCCATGCA
* *
103501355 TTTCCAAGAA
1 TTTCCATGCA
103501365 TTTCCATGCA
1 TTTCCATGCA
103501375 TTT
1 TTT
103501378 GAAGAGTCCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (10 bp):
TTTCCATGCA
Found at i:103504379 original size:22 final size:22
Alignment explanation
Indices: 103504336--103504379 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
103504326 TATTTTCAAA
* *
103504336 ATTTTTATATATTTTTATTTTT
1 ATTTTTAGATATTTTTAATTTT
103504358 ATTTTTAGA-ATTTTCTAATTTT
1 ATTTTTAGATATTTT-TAATTTT
103504380 TTCAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
ATTTTTAGATATTTTTAATTTT
Found at i:103505920 original size:21 final size:22
Alignment explanation
Indices: 103505896--103505937 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
103505886 AAAAAATGTT
103505896 ATAAT-GTTGCACGTAATTTTC
1 ATAATAGTTGCACGTAATTTTC
103505917 ATAATAGTTGCACGTAATTTT
1 ATAATAGTTGCACGTAATTTT
103505938 TTATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (22 bp):
ATAATAGTTGCACGTAATTTTC
Found at i:103507350 original size:14 final size:14
Alignment explanation
Indices: 103507331--103507369 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
103507321 GTCTGTCATT
103507331 TTATTTTTATT-TTC
1 TTATTTTT-TTCTTC
*
103507345 TTATTTTTTTCTTT
1 TTATTTTTTTCTTC
103507359 TTATTTTTTTC
1 TTATTTTTTTC
103507370 AAAAGTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 2 0.09
14 21 0.91
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (14 bp):
TTATTTTTTTCTTC
Found at i:103507365 original size:11 final size:11
Alignment explanation
Indices: 103507328--103507365 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
103507318 TATGTCTGTC
*
103507328 ATTTTATTTTT
1 ATTTTCTTTTT
103507339 ATTTTCTTATTT
1 ATTTTCTT-TTT
103507351 -TTTTCTTTTT
1 ATTTTCTTTTT
103507361 ATTTT
1 ATTTT
103507366 TTTCAAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 3 0.12
11 18 0.75
12 3 0.12
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (11 bp):
ATTTTCTTTTT
Found at i:103508302 original size:15 final size:15
Alignment explanation
Indices: 103508270--103508311 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 15
103508260 CTTCTTATTG
103508270 TTATCTTATTTCATTAC
1 TTAT-TTATTT-ATTAC
103508287 TTATTTATTTATTAC
1 TTATTTATTTATTAC
103508302 TT-TTTATTTA
1 TTATTTATTTA
103508312 CTTTCAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.32
15 7 0.28
16 6 0.24
17 4 0.16
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTATTTATTAC
Found at i:103508349 original size:3 final size:3
Alignment explanation
Indices: 103508327--103508408 Score: 60
Period size: 3 Copynumber: 27.0 Consensus size: 3
103508317 AAAATTTTAG
* * * *
103508327 ATT ATT CATT ATT ATC ATT ATT ATT ATT GTT ATT ATC ATT ATT GTT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
103508373 ATT GA-T ATT ATC GTT -TT CATC ATT ATT ATT ATT ATT
1 ATT -ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT
103508409 GTTTATGCAT
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 3 0.05
3 53 0.87
4 5 0.08
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:103508361 original size:21 final size:21
Alignment explanation
Indices: 103508335--103508384 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
103508325 AGATTATTCA
103508335 TTATTATCATTATTATTATTG
1 TTATTATCATTATTATTATTG
*
103508356 TTATTATCATTATTGTTATTG
1 TTATTATCATTATTATTATTG
*
103508377 ATATTATC
1 TTATTATC
103508385 GTTTTCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (21 bp):
TTATTATCATTATTATTATTG
Found at i:103512593 original size:25 final size:25
Alignment explanation
Indices: 103512565--103512612 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
103512555 CAATATGCAA
* *
103512565 TTCAATTCCACAATCCAATTTCACT
1 TTCAATTCAAAAATCCAATTTCACT
* *
103512590 TTCATTTCAAAAATCCACTTTCA
1 TTCAATTCAAAAATCCAATTTCA
103512613 AAATCAAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (25 bp):
TTCAATTCAAAAATCCAATTTCACT
Found at i:103513640 original size:19 final size:22
Alignment explanation
Indices: 103513601--103513640 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
103513591 AGAAACCCAA
103513601 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
103513623 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
103513641 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:103513739 original size:27 final size:26
Alignment explanation
Indices: 103513702--103513816 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
103513692 AGCATGGCTG
* *
103513702 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
103513728 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
103513756 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
103513783 CCAGATCAGATATTTGTGGCATAGCTA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
103513810 CCAGAAC
1 CCAGAAC
103513817 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:103513761 original size:54 final size:54
Alignment explanation
Indices: 103513702--103513816 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
103513692 AGCATGGCTG
*
103513702 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
103513756 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCTA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
103513810 CCAGAAC
1 CCAGAAC
103513817 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:103515472 original size:26 final size:25
Alignment explanation
Indices: 103515432--103515567 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 25
103515422 CATGATATTC
103515432 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
103515458 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAA-CATTTACCTAACCCA
*
103515484 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
103515510 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
*
103515536 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
103515562 TTATCA
1 TTATCA
103515568 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
25 3 0.03
26 96 0.93
27 4 0.04
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:103515513 original size:52 final size:52
Alignment explanation
Indices: 103515432--103515567 Score: 245
Period size: 52 Copynumber: 2.6 Consensus size: 52
103515422 CATGATATTC
* * *
103515432 TTATCATGAAACATTTACCTAACCCATTATCATGAAGCATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
103515484 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
103515536 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
103515568 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:103516940 original size:31 final size:32
Alignment explanation
Indices: 103516905--103516977 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
103516895 TATTTATCAT
* * *
103516905 ATAAAAATCTTATAA-TATAATAAT-TTAATTA
1 ATAAATATCTTATAACT-TAATAATAATAAATA
*
103516936 ATAAATATCTTTTAACTTAATAATAATAAATA
1 ATAAATATCTTATAACTTAATAATAATAAATA
103516968 ATAAATATCT
1 ATAAATATCT
103516978 ACTTACCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 20 0.56
32 16 0.44
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.41
Consensus pattern (32 bp):
ATAAATATCTTATAACTTAATAATAATAAATA
Found at i:103517723 original size:27 final size:27
Alignment explanation
Indices: 103517682--103517738 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
103517672 TATTTTTAAG
* * *
103517682 TATACGTGCCGATCAAGTTCATGCAAA
1 TATACGTGACAATCAAGTTCATGAAAA
103517709 TATACGTGACAATCAAGTTCATGAAAA
1 TATACGTGACAATCAAGTTCATGAAAA
103517736 TAT
1 TAT
103517739 GTTACAAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
TATACGTGACAATCAAGTTCATGAAAA
Found at i:103519128 original size:53 final size:53
Alignment explanation
Indices: 103519043--103519145 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 53
103519033 TTCCTTTTTA
* * * *
103519043 AACTTACCATTGCCATGTCTTGACATGATCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGATCTTACATGGGATCCTTGCCTTATG
* * * *
103519096 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTT
1 AACTCACCATTGCCATGCCTTGACATGATCTTACATGGGATCCTTGCCTT
103519146 GTAGTAGTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGATCTTACATGGGATCCTTGCCTTATG
Found at i:103523451 original size:19 final size:22
Alignment explanation
Indices: 103523407--103523451 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
103523397 ACTACTAATG
103523407 AAAAAATAACTAATTATACTACT
1 AAAAAATAACT-ATTATACTACT
103523430 AAAAAATAACT-TTA-AC-ACT
1 AAAAAATAACTATTATACTACT
103523449 AAA
1 AAA
103523452 TATACTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.27
20 2 0.09
21 3 0.14
23 11 0.50
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (22 bp):
AAAAAATAACTATTATACTACT
Found at i:103523456 original size:31 final size:32
Alignment explanation
Indices: 103523415--103523480 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
103523405 TGAAAAAATA
* *
103523415 ACTAATTATACTACT-AAAAAATAACTTTAAC
1 ACTAAATATACTACTAAAAAAATAACCTTAAC
103523446 ACTAAATATACTACTAAAAAAATAACCTTAAC
1 ACTAAATATACTACTAAAAAAATAACCTTAAC
103523478 ACT
1 ACT
103523481 TTTAACACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 14 0.44
32 18 0.56
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (32 bp):
ACTAAATATACTACTAAAAAAATAACCTTAAC
Found at i:103526914 original size:19 final size:20
Alignment explanation
Indices: 103526890--103526928 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
103526880 ACTTTTATTT
103526890 TTAATTTACA-TTTCATGTA
1 TTAATTTACATTTTCATGTA
103526909 TTAATTTACATTTTCATGTA
1 TTAATTTACATTTTCATGTA
103526929 AAAATAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
TTAATTTACATTTTCATGTA
Found at i:103530853 original size:80 final size:80
Alignment explanation
Indices: 103530720--103530879 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
103530710 TATACTATGG
103530720 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
1 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
*
103530785 TCTTTTGATAAAGAA
66 TCTTTTAATAAAGAA
103530800 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
1 TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
103530865 TCTTTTAATAAAGAA
66 TCTTTTAATAAAGAA
103530880 CTTACTATAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (80 bp):
TGCATTGGGCTGTGAAAATGACTATATTAACTTTATTCTTTGTGTCGTGTTAACTTTATCTACTG
TCTTTTAATAAAGAA
Found at i:103532623 original size:37 final size:37
Alignment explanation
Indices: 103532580--103532653 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
103532570 GTTCAAATTG
103532580 CTGTCACAGTTGACAACAGGTAAATGTAATATGTTAA
1 CTGTCACAGTTGACAACAGGTAAATGTAATATGTTAA
103532617 CTGTCACAGTTGACAACAGGTAAATGTAATATGTTAA
1 CTGTCACAGTTGACAACAGGTAAATGTAATATGTTAA
103532654 TGTAGCTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (37 bp):
CTGTCACAGTTGACAACAGGTAAATGTAATATGTTAA
Found at i:103536111 original size:12 final size:12
Alignment explanation
Indices: 103536094--103536118 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103536084 AATAGCGCAC
103536094 ACCAAGTATTTA
1 ACCAAGTATTTA
103536106 ACCAAGTATTTA
1 ACCAAGTATTTA
103536118 A
1 A
103536119 GTAAATGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ACCAAGTATTTA
Found at i:103540100 original size:26 final size:26
Alignment explanation
Indices: 103540064--103540225 Score: 263
Period size: 26 Copynumber: 6.2 Consensus size: 26
103540054 TGATACAAAT
103540064 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
103540090 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
103540116 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
103540142 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
103540168 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
103540194 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTCCA
103540220 TGATAA
1 TGATAA
103540226 GAATTTCATG
Statistics
Matches: 129, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
25 1 0.01
26 128 0.99
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:103540196 original size:78 final size:78
Alignment explanation
Indices: 103540064--103540225 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
103540054 TGATACAAAT
*
103540064 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGTTA
103540129 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* *
103540142 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGAGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGTTA
103540207 GGTAAATGTTTCA
66 GGTAAATGTTTCA
103540220 TGATAA
1 TGATAA
103540226 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGTTA
GGTAAATGTTTCA
Found at i:103544385 original size:55 final size:54
Alignment explanation
Indices: 103544215--103544386 Score: 152
Period size: 54 Copynumber: 3.2 Consensus size: 54
103544205 GGTAATGCAC
* * * ** **
103544215 CTTGTAAGCAAGTG-ACCT-GAAGGTATGATAGCCTTGGAGGTAAAACCATCAT
1 CTTGTAGGCAAGTGAACTTAGAAGATATGATAGCCTTGGAGGTAAAGTCGCCAT
* * * * *
103544267 CTTGTAGGCAAGTGAACTTATAAGGTATAATGGCATTGGAGGTAAAGTCGCCAT
1 CTTGTAGGCAAGTGAACTTAGAAGATATGATAGCCTTGGAGGTAAAGTCGCCAT
* * * * *
103544321 CATT-CAGGCAAGTGAATTTGAGAATATATGATAGCCTTGAAGGTAAAGTCGCCAG
1 C-TTGTAGGCAAGTGAACTT-AGAAGATATGATAGCCTTGGAGGTAAAGTCGCCAT
103544376 CTTGTAGGCAA
1 CTTGTAGGCAA
103544387 ACAAACCTAA
Statistics
Matches: 94, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
52 13 0.14
53 3 0.03
54 42 0.45
55 36 0.38
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (54 bp):
CTTGTAGGCAAGTGAACTTAGAAGATATGATAGCCTTGGAGGTAAAGTCGCCAT
Found at i:103549052 original size:7 final size:7
Alignment explanation
Indices: 103549040--103549068 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
103549030 TATACAGAAA
103549040 TCACTTG
1 TCACTTG
103549047 TCACTTG
1 TCACTTG
103549054 TCACTTG
1 TCACTTG
103549061 TCACTTG
1 TCACTTG
103549068 T
1 T
103549069 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:103549102 original size:31 final size:31
Alignment explanation
Indices: 103549067--103549274 Score: 260
Period size: 31 Copynumber: 6.7 Consensus size: 31
103549057 CTTGTCACTT
*
103549067 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
103549098 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**
103549129 GTAGCC-GGGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
103549159 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
103549190 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
*
103549221 GTAGCTGAAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CAAAGCTACCACTTTTCACTGATCAG
**
103549252 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCAAAGCTACCACTTTTCA
103549275 GTTGTCATTT
Statistics
Matches: 155, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
30 31 0.20
31 121 0.78
32 2 0.01
33 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:103549224 original size:62 final size:62
Alignment explanation
Indices: 103549074--103549274 Score: 305
Period size: 62 Copynumber: 3.3 Consensus size: 62
103549064 CTTGTAGCCA
* ** * *
103549074 AAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
* * *
103549136 -GGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
* *
103549197 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
103549259 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
103549275 GTTGTCATTT
Statistics
Matches: 125, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
61 53 0.42
62 72 0.58
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (62 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
Done.