Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 362 of 427
Found at i:105099349 original size:109 final size:109
Alignment explanation
Indices: 105099222--105099539 Score: 517
Period size: 101 Copynumber: 3.0 Consensus size: 109
105099212 GAATTAACGA
105099222 CCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACT
1 CCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACT
105099287 TTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAG
66 TTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAG
*
105099331 CCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGGATTATGGTATAC-
1 CCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACT
105099395 TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTAG
66 TTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAG
* *
105099432 CCAACCAATATGCATGGATTAATGACTTGAATTGTTTATTATGTTTTATGGCATTATGGTATACT
1 CCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACT
* * * *
105099497 TTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
105099540 TTCATCTTTC
Statistics
Matches: 193, Mismatches: 8, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
101 78 0.40
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 76 0.39
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (109 bp):
CCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACT
TTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAG
Found at i:105099943 original size:28 final size:28
Alignment explanation
Indices: 105099903--105099972 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
105099893 TATGAGATTG
*
105099903 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
105099931 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
105099959 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
105099973 GACTTACTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:105103832 original size:109 final size:109
Alignment explanation
Indices: 105103696--105104014 Score: 501
Period size: 101 Copynumber: 3.0 Consensus size: 109
105103686 GGAATTAACG
* *
105103696 GCCGATCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCACTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
105103761 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
*
105103805 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGGATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
105103870 -TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* *
105103906 GCCGACCAATATGCATGGATTAATGACTTGAATTGTTTATTATGTTTTATTGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
* * * *
105103971 TTTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
105104015 TTCATCTTTC
Statistics
Matches: 192, Mismatches: 10, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
101 78 0.41
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 75 0.39
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (109 bp):
GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
Found at i:105104418 original size:28 final size:28
Alignment explanation
Indices: 105104378--105104446 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
105104368 TATGAGATTG
*
105104378 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
105104406 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
105104434 GCACTAAGTGTGC
1 GCACTAAGTGTGC
105104447 AGACTTACTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:105116431 original size:5 final size:5
Alignment explanation
Indices: 105116419--105116456 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
105116409 AAAAGTTAAG
105116419 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
105116457 ATAACTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:105117416 original size:41 final size:40
Alignment explanation
Indices: 105117356--105117467 Score: 149
Period size: 37 Copynumber: 2.9 Consensus size: 40
105117346 TTCGACTTTG
*
105117356 AGTCGATGAGACACGGGGTGTCAAATTATTACTTTGGATT
1 AGTCGATGAGACACTGGGTGTCAAATTATTACTTTGGATT
* * *
105117396 AATTCGATGAGACACTGGGTG-CCAA-T-TTACTTTGGGTT
1 -AGTCGATGAGACACTGGGTGTCAAATTATTACTTTGGATT
*
105117434 AGCCGATGAGACACTGGGTGTCAAATTATTACTT
1 AGTCGATGAGACACTGGGTGTCAAATTATTACTT
105117468 CGAATTATCT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
37 18 0.30
38 14 0.23
39 2 0.03
40 9 0.15
41 18 0.30
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (40 bp):
AGTCGATGAGACACTGGGTGTCAAATTATTACTTTGGATT
Found at i:105117626 original size:19 final size:19
Alignment explanation
Indices: 105117602--105117641 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
105117592 TGATATTATA
105117602 TGTGAAATGAAA-ATGGGAT
1 TGTGAAATGAAATAT-GGAT
*
105117621 TGTGAATTGAAATATGGAT
1 TGTGAAATGAAATATGGAT
105117640 TG
1 TG
105117642 AGACACATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.33
Consensus pattern (19 bp):
TGTGAAATGAAATATGGAT
Found at i:105117880 original size:19 final size:17
Alignment explanation
Indices: 105117832--105117866 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
105117822 GTGAATTTTA
*
105117832 AATATTCAATTGTGCCT
1 AATATTTAATTGTGCCT
105117849 AATATTTAATTGTGCCT
1 AATATTTAATTGTGCCT
105117866 A
1 A
105117867 TTATATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
AATATTTAATTGTGCCT
Found at i:105118620 original size:20 final size:21
Alignment explanation
Indices: 105118595--105118640 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
105118585 AAGTAGATAT
105118595 GGTTT-TAG-GTTATAAAATTG
1 GGTTTATAGTGTTA-AAAATTG
105118615 GGTTTTATAGTGTTAAAAATTG
1 GG-TTTATAGTGTTAAAAATTG
105118637 GGTT
1 GGTT
105118641 AAATAAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.09
21 5 0.22
22 12 0.52
23 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (21 bp):
GGTTTATAGTGTTAAAAATTG
Found at i:105119890 original size:22 final size:24
Alignment explanation
Indices: 105119863--105119906 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
105119853 AAATTTCTCA
*
105119863 ACTTTACTTT-TTAT-TCAAAAAC
1 ACTTTAATTTGTTATATCAAAAAC
105119885 ACTTTAATTTGTTATATCAAAA
1 ACTTTAATTTGTTATATCAAAA
105119907 CATATAATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (24 bp):
ACTTTAATTTGTTATATCAAAAAC
Found at i:105130568 original size:25 final size:25
Alignment explanation
Indices: 105130539--105130586 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105130529 TTATAATATG
* * *
105130539 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105130564 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105130587 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105130655 original size:20 final size:20
Alignment explanation
Indices: 105130630--105130688 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
105130620 TAAATATGGT
105130630 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
105130650 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
105130670 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
105130689 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:105130808 original size:47 final size:48
Alignment explanation
Indices: 105130739--105130857 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
105130729 GAGGAAGTGA
105130739 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
105130786 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
105130834 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105130858 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:105130833 original size:24 final size:24
Alignment explanation
Indices: 105130739--105130857 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
105130729 GAGGAAGTGA
*
105130739 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
105130763 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
105130786 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105130810 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
105130834 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105130858 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105131084 original size:31 final size:31
Alignment explanation
Indices: 105131049--105131150 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
105131039 CGTTTACAGT
105131049 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
105131080 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
*
105131118 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
105131149 AA
1 AA
105131151 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
31 30 0.49
33 1 0.02
36 1 0.02
38 29 0.48
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:105131118 original size:38 final size:38
Alignment explanation
Indices: 105131066--105131173 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
105131056 TCGGCCCAGT
105131066 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
105131104 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
105131142 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
105131174 GCATGATTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 53 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:105138785 original size:25 final size:25
Alignment explanation
Indices: 105138756--105138803 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105138746 CCTTATAATG
* * *
105138756 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105138781 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105138804 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105138872 original size:20 final size:20
Alignment explanation
Indices: 105138847--105138905 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
105138837 TAAATATGGT
105138847 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
105138867 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
105138887 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
105138906 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:105139011 original size:23 final size:23
Alignment explanation
Indices: 105138956--105139074 Score: 143
Period size: 24 Copynumber: 5.0 Consensus size: 23
105138946 GAGGAAGTGA
105138956 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
105138979 CGAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
105139003 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
105139027 GAAAGGGCTT-TGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
105139050 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105139074 A
1 A
105139075 TGATAAAGCA
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
23 38 0.45
24 39 0.46
25 7 0.08
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:105139025 original size:47 final size:47
Alignment explanation
Indices: 105138956--105139073 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 47
105138946 GAGGAAGTGA
105138956 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGCCCCAGTTATT
* *
105139003 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGCCCCAGTTATT
*
105139050 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105139074 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
46 10 0.15
47 44 0.68
48 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGCCCCAGTTATT
Found at i:105139059 original size:24 final size:24
Alignment explanation
Indices: 105138956--105139073 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
105138946 GAGGAAGTGA
*
105138956 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
105138980 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
105139003 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
105139027 GAAAGGGCTT-TGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105139050 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105139074 ATGATAAAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
23 38 0.46
24 36 0.44
25 8 0.10
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105139299 original size:31 final size:31
Alignment explanation
Indices: 105139264--105139362 Score: 137
Period size: 31 Copynumber: 3.1 Consensus size: 31
105139254 CGTTTACAGT
*
105139264 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGA
105139295 AAAGGCTTCGGCCCAGTATTATGAAATATGAAAATA
1 AAAGGCTTCGGCCCAGTATTATGAAATATG-----A
105139331 AAAGGCTTCGGCCCAGTATTATG-AATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGA
105139361 AA
1 AA
105139363 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
30 3 0.05
31 29 0.47
35 6 0.10
36 24 0.39
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGA
Found at i:105139338 original size:36 final size:37
Alignment explanation
Indices: 105139281--105139385 Score: 169
Period size: 36 Copynumber: 2.8 Consensus size: 37
105139271 TCGGCCCAGT
105139281 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATG
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATG
105139318 AAATATGAAA-AT-AAAAGGCTTCGGCCCAGTATTATG
1 -AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATG
*
105139354 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
105139386 GCATGATTGA
Statistics
Matches: 63, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
35 9 0.14
36 26 0.41
37 6 0.10
38 22 0.35
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (37 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATG
Found at i:105147016 original size:25 final size:25
Alignment explanation
Indices: 105146987--105147034 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105146977 CTTATAATTG
* * *
105146987 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105147012 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105147035 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105147114 original size:20 final size:19
Alignment explanation
Indices: 105147078--105147135 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 19
105147068 TAAATATGGT
*
105147078 ATGTATGATATCACATGAA
1 ATGTATGATAGCACATGAA
*
105147097 ATGTATGATACGCACATGAT
1 ATGTATGATA-GCACATGAA
105147117 ATGTATGATATGCACATGA
1 ATGTATGATA-GCACATGA
105147136 GGTAATCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
19 10 0.29
20 25 0.71
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (19 bp):
ATGTATGATAGCACATGAA
Found at i:105147255 original size:47 final size:48
Alignment explanation
Indices: 105147186--105147304 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
105147176 GAGGAAGTGA
105147186 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
105147233 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
105147281 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105147305 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:105147280 original size:24 final size:24
Alignment explanation
Indices: 105147186--105147304 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
105147176 GAGGAAGTGA
*
105147186 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
105147210 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
105147233 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105147257 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
105147281 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105147305 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105147534 original size:31 final size:31
Alignment explanation
Indices: 105147496--105147559 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
105147486 CGTTTACAGT
105147496 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* * *
105147527 AAAGGCTTCGGCCGAGTATTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
105147558 AA
1 AA
105147560 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:105147565 original size:38 final size:38
Alignment explanation
Indices: 105147513--105147620 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
105147503 TCAGCCCAGT
*
105147513 AATATGAAATATGAAAAGGCTTCGGCCGAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
105147551 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
105147589 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
105147621 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:105156198 original size:13 final size:13
Alignment explanation
Indices: 105156180--105156205 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105156170 GATTAGAGGA
105156180 CACTCTTGAAGGC
1 CACTCTTGAAGGC
105156193 CACTCTTGAAGGC
1 CACTCTTGAAGGC
105156206 TTTTAGGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
CACTCTTGAAGGC
Found at i:105156533 original size:14 final size:14
Alignment explanation
Indices: 105156514--105156540 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105156504 ATATTTGACT
105156514 TGTTCTTAATTATG
1 TGTTCTTAATTATG
105156528 TGTTCTTAATTAT
1 TGTTCTTAATTAT
105156541 TGCTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:105164664 original size:93 final size:94
Alignment explanation
Indices: 105164527--105164795 Score: 294
Period size: 94 Copynumber: 2.9 Consensus size: 94
105164517 CATTTCGTAT
* * *** * * *
105164527 GCCAGTGTAAGACCATGT-T-GGACATGGTATCGGCGTTGATTATGATAACCAATGTAAGACCAT
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGC-CACAATATGATAGCCAGTGTAAGACCAT
* * *
105164590 GTTGGACATGGCATCGGCGTTGA-TTGTGA
65 GTTGGACATGGCATCGGCATTGAGATGAGA
* * * *
105164619 GCCAATGTAAGACCATGTCTGGGACATGGCGTTGGCCACCATATGAGAGCCAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGATAGCCAGTGTAAGACCATG
*
105164684 TTGGACATGGCCTCGGCATTGAGATGAGA
66 TTGGACATGGCATCGGCATTGAGATGAGA
* * * *
105164713 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATG-TGAGCCAGTGTAAGACCAT
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAT-AGCCAGTGTAAGACCAT
105164777 GTTTGGGACATGGCATCGG
65 G-TT-GGACATGGCATCGG
105164796 TAATTCACTC
Statistics
Matches: 146, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
92 17 0.12
93 42 0.29
94 72 0.49
95 2 0.01
96 13 0.09
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (94 bp):
GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGATAGCCAGTGTAAGACCATG
TTGGACATGGCATCGGCATTGAGATGAGA
Found at i:105164681 original size:48 final size:48
Alignment explanation
Indices: 105164485--105164795 Score: 221
Period size: 48 Copynumber: 6.6 Consensus size: 48
105164475 ATGAGCTAGA
* **
105164485 GTAAGACCATGTCAGGGACATGGCATCGG--AC-ACATTTCGTATGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCACAACA-TGAG-A-GCCAGT
* *** ** * * *
105164533 GTAAGACCATGT-T-GGACATGGTATCGGCGTTGATTATGATAACCAAT
1 GTAAGACCATGTCTGGGACATGGCATCGGC-CACAACATGAGAGCCAGT
**** * * *
105164580 GTAAGACCATGT-T-GGACATGGCATCGGCGTTGA-TTGTGAGCCAAT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGT
* * * *
105164625 GTAAGACCATGTCTGGGACATGGCGTTGGCCACCATATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGT
* ** * *
105164673 GTAAGACCATGT-T-GGACATGGCCTCGG-CATTGAGATGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCA-CAACATGAGAGCCAGT
* *
105164719 GTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGT
*
105164767 GTAAGACCATGTTTGGGACATGGCATCGG
1 GTAAGACCATGTCTGGGACATGGCATCGG
105164796 TAATTCACTC
Statistics
Matches: 209, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
45 22 0.11
46 51 0.24
47 47 0.22
48 86 0.41
49 2 0.01
50 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGT
Found at i:105164763 original size:94 final size:93
Alignment explanation
Indices: 105164579--105164795 Score: 299
Period size: 94 Copynumber: 2.3 Consensus size: 93
105164569 TGATAACCAA
* * *
105164579 TGTAAGACCATGTTGGACATGGCATCGGCGTTGATTGTGAGCCAATGTAAGACCATGTCTGGGAC
1 TGTAAGACCATGTTGGACATGGCATCGGCATTGAATGAGAGCCAATGTAAGACCATGTCTGGGAC
* * * *
105164644 ATGGCGTTGGCCACCATATGAGAGCCAG
66 ATGGCATCGGCCACAACATGAGAGCCAG
* * *
105164672 TGTAAGACCATGTTGGACATGGCCTCGGCATTGAGATGAGAGCTAGTGTAAGACCATGTCTGGGA
1 TGTAAGACCATGTTGGACATGGCATCGGCATTGA-ATGAGAGCCAATGTAAGACCATGTCTGGGA
* *
105164737 CATGGCATCGGCCTCAACATGTGAGCCAG
65 CATGGCATCGGCCACAACATGAGAGCCAG
105164766 TGTAAGACCATGTTTGGGACATGGCATCGG
1 TGTAAGACCATG-TT-GGACATGGCATCGG
105164796 TAATTCACTC
Statistics
Matches: 108, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
93 32 0.30
94 61 0.56
95 2 0.02
96 13 0.12
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (93 bp):
TGTAAGACCATGTTGGACATGGCATCGGCATTGAATGAGAGCCAATGTAAGACCATGTCTGGGAC
ATGGCATCGGCCACAACATGAGAGCCAG
Found at i:105171229 original size:9 final size:10
Alignment explanation
Indices: 105171209--105171244 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
105171199 GTCTTAAGAA
105171209 AAAATAAA-T
1 AAAATAAATT
105171218 AAAA-AAATT
1 AAAATAAATT
105171227 AAAATAAA-T
1 AAAATAAATT
105171236 AAAATAAAT
1 AAAATAAAT
105171245 GGACTCAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
8 3 0.12
9 18 0.75
10 3 0.12
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
AAAATAAATT
Found at i:105171230 original size:18 final size:19
Alignment explanation
Indices: 105171209--105171244 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
105171199 GTCTTAAGAA
105171209 AAAATAAATAAAA-AAATT
1 AAAATAAATAAAATAAATT
105171227 AAAATAAATAAAATAAAT
1 AAAATAAATAAAATAAAT
105171245 GGACTCAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATAAATAAAATAAATT
Found at i:105172992 original size:19 final size:19
Alignment explanation
Indices: 105172963--105173046 Score: 75
Period size: 19 Copynumber: 4.4 Consensus size: 19
105172953 GGTAGGGGAG
*
105172963 AAGGGAGAAA-GGAAAGAA
1 AAGGAAGAAAGGGAAAGAA
105172981 AGAGGAAGAAAGGGAAAGAA
1 A-AGGAAGAAAGGGAAAGAA
* *
105173001 AAGGAAG-GAGGG-AGGAGA
1 AAGGAAGAAAGGGAAAGA-A
*
105173019 AAGGAAAGAAAGGGAAGGAA
1 AAGG-AAGAAAGGGAAAGAA
*
105173039 AAAGAAGA
1 AAGGAAGA
105173047 GTGGTGGCCG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
17 3 0.05
18 10 0.18
19 21 0.38
20 17 0.31
21 4 0.07
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (19 bp):
AAGGAAGAAAGGGAAAGAA
Found at i:105173039 original size:10 final size:10
Alignment explanation
Indices: 105172968--105173039 Score: 55
Period size: 10 Copynumber: 7.5 Consensus size: 10
105172958 GGGAGAAGGG
105172968 AGAAA-GGAA
1 AGAAAGGGAA
105172977 AGAAAGAGG-A
1 AGAAAG-GGAA
105172987 AGAAAGGGAA
1 AGAAAGGGAA
*
105172997 AGAAAAGG-A
1 AGAAAGGGAA
* *
105173006 AG-GAGGGAGG
1 AGAAAGGGA-A
105173016 AGAAA-GGAA
1 AGAAAGGGAA
105173025 AGAAAGGGAA
1 AGAAAGGGAA
*
105173035 GGAAA
1 AGAAA
105173040 AAGAAGAGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
8 3 0.06
9 15 0.31
10 28 0.57
11 3 0.06
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (10 bp):
AGAAAGGGAA
Found at i:105176479 original size:23 final size:23
Alignment explanation
Indices: 105176453--105176496 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
105176443 TAGAAAATAA
105176453 AAATT-AAACTAAAAGTAAAAAGT
1 AAATTGAAA-TAAAAGTAAAAAGT
*
105176476 AAATTGCAATAAAAGTAAAAA
1 AAATTGAAATAAAAGTAAAAA
105176497 TGGCTAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (23 bp):
AAATTGAAATAAAAGTAAAAAGT
Found at i:105180433 original size:22 final size:22
Alignment explanation
Indices: 105180408--105180464 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
105180398 CACGGCAGTG
*
105180408 TGCCTCTCTTCACATAGGC-GTA
1 TGCCTCTCCTCACAT-GGCTGTA
* *
105180430 TGCCTCT-GTCACATGGCTGTT
1 TGCCTCTCCTCACATGGCTGTA
105180451 TGCCTCTCCTCACA
1 TGCCTCTCCTCACA
105180465 CGATCATTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 3 0.10
21 15 0.50
22 12 0.40
ACGTcount: A:0.14, C:0.35, G:0.18, T:0.33
Consensus pattern (22 bp):
TGCCTCTCCTCACATGGCTGTA
Found at i:105180945 original size:92 final size:92
Alignment explanation
Indices: 105180849--105181018 Score: 227
Period size: 92 Copynumber: 1.8 Consensus size: 92
105180839 TAGCAATTTG
* * * * ** *
105180849 ACTGCAA-ATAATTGGTATAGC-GATTTACCGTATTGCATTGTACCGTACGTACGTTAACTATGC
1 ACTGCAACATAATT-GTACAGCTGA-TTACCGAATTACACTGTACCGTACGTACGCCAACTACGC
105180912 TACGTACTATTATCTGATCTGGTAGTGTA
64 TACGTACTATTATCTGATCTGGTAGTGTA
* *
105180941 ACTGCAACATGATTGTACAGCTGATTACCGAATTACACTGTACTGTACGTACGCCAACTACGCTA
1 ACTGCAACATAATTGTACAGCTGATTACCGAATTACACTGTACCGTACGTACGCCAACTACGCTA
105181006 CGTACTATTATCT
66 CGTACTATTATCT
105181019 AATTTGGCGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 60 0.90
93 7 0.10
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (92 bp):
ACTGCAACATAATTGTACAGCTGATTACCGAATTACACTGTACCGTACGTACGCCAACTACGCTA
CGTACTATTATCTGATCTGGTAGTGTA
Found at i:105183155 original size:6 final size:6
Alignment explanation
Indices: 105183110--105183138 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
105183100 TTTAATTATA
105183110 TATTTT TA-TTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
105183139 GAATCTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:105183971 original size:21 final size:22
Alignment explanation
Indices: 105183923--105183972 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
105183913 TGTGCTTTAG
* * *
105183923 TCACACGGCCGTGTGCCTCTCT
1 TCACACGGCCGAGTGCCCCTCC
*
105183945 TTACACGG-CGAGTGCCCCTCC
1 TCACACGGCCGAGTGCCCCTCC
105183966 TCACACG
1 TCACACG
105183973 ATCTTTTGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.14, C:0.42, G:0.22, T:0.22
Consensus pattern (22 bp):
TCACACGGCCGAGTGCCCCTCC
Found at i:105201086 original size:45 final size:45
Alignment explanation
Indices: 105201026--105201162 Score: 186
Period size: 45 Copynumber: 3.0 Consensus size: 45
105201016 CTTACCGAGG
* * *
105201026 TAGTGCGATAGTATCTTTCAACTATGGTGTTATACCTTTACAGTT
1 TAGTGCCATAGTATCTTTCAACTATGGTCTTATGCCTTTACAGTT
* * **
105201071 TAGTGCCATATTATCTTTCAACTATGTTCTTATGCCTTT-TTGATT
1 TAGTGCCATAGTATCTTTCAACTATGGTCTTATGCCTTTACAG-TT
*
105201116 TAGTGCCATAGTATCTTTCAACTATGGTCTTATGCTTTTACAGTT
1 TAGTGCCATAGTATCTTTCAACTATGGTCTTATGCCTTTACAGTT
105201161 TA
1 TA
105201163 AAATGTCATG
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.01
45 76 0.97
46 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.46
Consensus pattern (45 bp):
TAGTGCCATAGTATCTTTCAACTATGGTCTTATGCCTTTACAGTT
Found at i:105203735 original size:108 final size:109
Alignment explanation
Indices: 105203467--105203744 Score: 274
Period size: 109 Copynumber: 2.6 Consensus size: 109
105203457 TTTTGACCGG
* * * * * * ** * * * *
105203467 CTCACGATACTACTCACACGAGCTGCAGAGAATCTACAACATATGTAAGATCTTAGTCATCGTTA
1 CTCACGATGCTGCTCACACAAGATGTAGAGAATCCACAACATATACAGGATCTCAGCCATCGCTA
** * * * * *
105203532 TAGTTTGTAACACTAGTACATGGTACCTGCTAAATATTCACCAT
66 CGGTCTGTATCACCAATACATAGTACCTGCTAAATATTCACCAT
*
105203576 CTCACGATGCTGCTCACACAAGATGTAGAGAATTCACAACATATACAGGATC-CTAGCCATCGCT
1 CTCACGATGCTGCTCACACAAGATGTAGAGAATCCACAACATATACAGGATCTC-AGCCATCGCT
*
105203640 ACGGTCTGTATCACCAATACATAGTACCTGCTAAGTCA-TCACCAT
65 ACGGTCTGTATCACCAATACATAGTACCTGCTAAAT-ATTCACCAT
* * * * * *
105203685 TTCACGGTGCT-CTCACACAAGCTGTAGAGAATCCGCGACATATGCAGGATCTCAGCCATC
1 CTCACGATGCTGCTCACACAAGATGTAGAGAATCCACAACATATACAGGATCTCAGCCATC
105203745 ATTACGATCT
Statistics
Matches: 138, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
108 42 0.30
109 95 0.69
110 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (109 bp):
CTCACGATGCTGCTCACACAAGATGTAGAGAATCCACAACATATACAGGATCTCAGCCATCGCTA
CGGTCTGTATCACCAATACATAGTACCTGCTAAATATTCACCAT
Found at i:105203760 original size:108 final size:109
Alignment explanation
Indices: 105203548--105203760 Score: 270
Period size: 108 Copynumber: 2.0 Consensus size: 109
105203538 GTAACACTAG
* *
105203548 TACATGGTACCTGCTAAATATTCACCATCTCACGATGCTGCTCACACAAGATGTAGAGAATTCAC
1 TACATAGTACCTGCTAAATATTCACCATCTCACGATGCTGCTCACACAAGATGTAGAGAATCCAC
* * *
105203613 AACATATACAGGATCCTAGCCATCGCTACGGTCTGTATCACCAA
66 AACATATACAGGATCCTAGCCATCACTACGATCTATATCACCAA
* * * * *
105203657 TACATAGTACCTGCTAAGTCA-TCACCATTTCACGGTGCT-CTCACACAAGCTGTAGAGAATCCG
1 TACATAGTACCTGCTAAAT-ATTCACCATCTCACGATGCTGCTCACACAAGATGTAGAGAATCCA
* * *
105203720 CGACATATGCAGGAT-CTCAGCCATCATTACGATCTATATCA
65 CAACATATACAGGATCCT-AGCCATCACTACGATCTATATCA
105203761 TCGGCTTAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
107 2 0.02
108 53 0.60
109 33 0.37
110 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (109 bp):
TACATAGTACCTGCTAAATATTCACCATCTCACGATGCTGCTCACACAAGATGTAGAGAATCCAC
AACATATACAGGATCCTAGCCATCACTACGATCTATATCACCAA
Found at i:105223380 original size:5 final size:5
Alignment explanation
Indices: 105223370--105223402 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
105223360 TATAAATATA
105223370 TATTT TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TATTT TAT
105223403 ATATAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:105224738 original size:12 final size:12
Alignment explanation
Indices: 105224721--105224745 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
105224711 CTTCTCTTAT
105224721 AATTTTATTCAA
1 AATTTTATTCAA
105224733 AATTTTATTCAA
1 AATTTTATTCAA
105224745 A
1 A
105224746 CCAATAACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (12 bp):
AATTTTATTCAA
Found at i:105226782 original size:2 final size:2
Alignment explanation
Indices: 105226775--105226818 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
105226765 ATAGAAATCT
105226775 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105226817 TA
1 TA
105226819 ACATGTTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:105227487 original size:2 final size:2
Alignment explanation
Indices: 105227480--105227539 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
105227470 TAATCGATAC
105227480 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105227522 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
105227540 AAGTACGAGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:105228422 original size:6 final size:6
Alignment explanation
Indices: 105228411--105228437 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
105228401 AAAGTTATTG
105228411 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
105228438 CCTTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:105230046 original size:3 final size:3
Alignment explanation
Indices: 105230035--105230069 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
105230025 ACAATAATAA
*
105230035 AAG ATG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
105230070 TTTCTGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.31, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:105231142 original size:3 final size:3
Alignment explanation
Indices: 105231134--105231167 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
105231124 ACATTGTATA
105231134 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
105231168 GAAGGAGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:105232042 original size:31 final size:31
Alignment explanation
Indices: 105231958--105232047 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 31
105231948 TTTATTTTTA
105231958 AAATATATA-TT-AACTACAATTAGAGTTTC
1 AAATATATATTTGAACTACAATTAGAGTTTC
* * *
105231987 AAGTGTGATTATATG-A--A-AATTAGAGTTTC
1 AAATAT-A-TATTTGAACTACAATTAGAGTTTC
105232016 AAATATATATTTGAACTACAATTAGAGTTTC
1 AAATATATATTTGAACTACAATTAGAGTTTC
105232047 A
1 A
105232048 CGTGTATAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
27 5 0.11
28 2 0.04
29 20 0.43
30 3 0.06
31 15 0.32
32 2 0.04
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (31 bp):
AAATATATATTTGAACTACAATTAGAGTTTC
Found at i:105232082 original size:60 final size:58
Alignment explanation
Indices: 105231958--105232075 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 58
105231948 TTTATTTTTA
* * *
105231958 AAATATATATTAACTACAATTAGAGTTTCAAGTGTGATTATATGAAAATTAGAGTTTC
1 AAATATATATTAACTACAATTAGAGTTTCAAGTGTGATAATATCAAAATTAAAGTTTC
* *
105232016 AAATATATATTTGAACTACAATTAGAGTTTCACGTGT-ATAATTTCACCAAATTAAAGTTT
1 AAATATATA-TT-AACTACAATTAGAGTTTCAAGTGTGATAATATCA--AAATTAAAGTTT
105232076 ATATATACAA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
58 9 0.18
59 8 0.16
60 23 0.45
61 11 0.22
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (58 bp):
AAATATATATTAACTACAATTAGAGTTTCAAGTGTGATAATATCAAAATTAAAGTTTC
Found at i:105233758 original size:21 final size:22
Alignment explanation
Indices: 105233732--105233785 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
105233722 ATATACAAAA
* *
105233732 TAAAATATACACATACTATA-T
1 TAAAATATACACATAATATACG
* *
105233753 TAAAATGTATACATAATATACG
1 TAAAATATACACATAATATACG
105233775 TAAAATATACA
1 TAAAATATACA
105233786 TAATGTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.31
Consensus pattern (22 bp):
TAAAATATACACATAATATACG
Found at i:105234632 original size:11 final size:11
Alignment explanation
Indices: 105234616--105234657 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
105234606 AAAAGGTGCT
105234616 TTTTTTATATA
1 TTTTTTATATA
* *
105234627 TTTTTT-TTTG
1 TTTTTTATATA
105234637 TTTTTTATATA
1 TTTTTTATATA
*
105234648 TGTTTTATAT
1 TTTTTTATAT
105234658 GTATCTATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTTTTATATA
Found at i:105235094 original size:11 final size:11
Alignment explanation
Indices: 105235086--105235110 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
105235076 TGGGGTTTGT
105235086 ATTGGGTTTTA
1 ATTGGGTTTTA
105235097 ATTGGGTTTTA
1 ATTGGGTTTTA
105235108 ATT
1 ATT
105235111 CGGTAGTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (11 bp):
ATTGGGTTTTA
Found at i:105235628 original size:2 final size:2
Alignment explanation
Indices: 105235621--105235662 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
105235611 ATAAAACTGG
105235621 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105235663 GGTATTATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:105238326 original size:2 final size:2
Alignment explanation
Indices: 105238321--105238351 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
105238311 TTTTTTTTAA
105238321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105238352 AACAACATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:105238478 original size:23 final size:24
Alignment explanation
Indices: 105238433--105238478 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
105238423 ATAAAGGTAA
*
105238433 TTTAAAATAAATATTATACAAAAT
1 TTTAAAATAAATATAATACAAAAT
*
105238457 TTTAAAAT-AATATAATATAAAA
1 TTTAAAATAAATATAATACAAAA
105238479 GAGAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
TTTAAAATAAATATAATACAAAAT
Found at i:105238656 original size:22 final size:21
Alignment explanation
Indices: 105238628--105238668 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
105238618 AATTACACAT
105238628 ATTGAAATGAAAATAAAACTTA
1 ATTGAAAT-AAAATAAAACTTA
*
105238650 ATTGAAATAAAATTAAACT
1 ATTGAAATAAAATAAAACT
105238669 AACAGAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (21 bp):
ATTGAAATAAAATAAAACTTA
Found at i:105240745 original size:80 final size:80
Alignment explanation
Indices: 105240607--105240814 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
105240597 CAATTGAATG
* * ** * * *
105240607 ACATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTATATCCGGGTTAAGACCCGAAGGC
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTAGTTATATCCGGGCTAACACCCGAAGGC
* *
105240671 AATTGTGCTAGT-GACT
65 AATTGTGCAACTCG-CT
* *
105240687 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAACACCCGAAGGCA
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAACACCCGAAGGCA
* *
105240752 TTTGTGCAACTCGTT
66 ATTGTGCAACTCGCT
* * *
105240767 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
105240815 TTGTATTCCA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 106 0.97
81 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.25
Consensus pattern (80 bp):
ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAACACCCGAAGGCA
ATTGTGCAACTCGCT
Found at i:105240808 original size:40 final size:40
Alignment explanation
Indices: 105240609--105240814 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
105240599 ATTGAATGAC
* * ** **
105240609 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTGGTTAT
* * ** *
105240649 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTAT
* *
105240689 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
* * * *
105240729 ATCCGGGCTAACACCCGAAGGCATTTGTGCAACTCGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
*
105240769 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
105240809 ATCCGG
1 ATCCGG
105240815 TTGTATTCCA
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
Found at i:105242261 original size:2 final size:2
Alignment explanation
Indices: 105242254--105242283 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
105242244 AGCTTTTATC
105242254 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105242284 TAAAAAGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105243622 original size:44 final size:45
Alignment explanation
Indices: 105243573--105243669 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
105243563 TACCTCGGGA
* * **
105243573 AGATAAGAT-TCACCATCTTCGA-TCTGCTCCACTACTGC-TTAGGG
1 AGATAAGATCT-ACAATCTT-GAGTCTACTCCACTACAACTTTAGGG
*
105243617 AGATAAGATCTACAATCTTGAGTCTACTCCACTGCAACTTTAGGG
1 AGATAAGATCTACAATCTTGAGTCTACTCCACTACAACTTTAGGG
105243662 AGATAAGA
1 AGATAAGA
105243670 CTTGCTTTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.04
44 28 0.62
45 15 0.33
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (45 bp):
AGATAAGATCTACAATCTTGAGTCTACTCCACTACAACTTTAGGG
Found at i:105243669 original size:45 final size:45
Alignment explanation
Indices: 105243610--105243727 Score: 122
Period size: 41 Copynumber: 2.7 Consensus size: 45
105243600 TCCACTACTG
105243610 CTTAGGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAA-
1 CTTAGGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAAT
* * *
105243654 CTTTAGGGAGATAAGA-CTTGC--T-TTGA-TCTACTCTACTGCTAT
1 C-TTAGGGAGATAAGATC-TACAATCTTGAGTCTACTCCACTGCAAT
* * *
105243696 CTCAGGGAGATAAGATCTTCAATCTTCAGTCT
1 CTTAGGGAGATAAGATCTACAATCTTGAGTCT
105243728 GCTTCCTTGC
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
41 28 0.47
42 6 0.10
43 2 0.03
44 5 0.08
45 19 0.32
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (45 bp):
CTTAGGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAAT
Found at i:105244210 original size:44 final size:46
Alignment explanation
Indices: 105244110--105244227 Score: 122
Period size: 44 Copynumber: 2.7 Consensus size: 46
105244100 TTGCTTTGAT
* **
105244110 CTGCTCTAC-TGCTATCTCAGAGAGATAAGATCTTCAATCTTCAGT
1 CTGCTCTACTTGCTACCTCAGAGAGATAAGATCTTCAATCTTCAAC
*
105244155 CTGCT-TCCTTGCTACCTCAG-GAAGATAAGA-CTAT-AATCTTCAAC
1 CTGCTCTACTTGCTACCTCAGAG-AGATAAGATCT-TCAATCTTCAAC
* *
105244199 CTGCTCT-CTTGCTACCTTAAAGAGATAAG
1 CTGCTCTACTTGCTACCTCAGAGAGATAAG
105244228 GCTGGTGGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
44 36 0.58
45 26 0.42
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (46 bp):
CTGCTCTACTTGCTACCTCAGAGAGATAAGATCTTCAATCTTCAAC
Found at i:105244255 original size:429 final size:429
Alignment explanation
Indices: 105243471--105244256 Score: 1306
Period size: 429 Copynumber: 1.8 Consensus size: 429
105243461 GTTTACTTCT
*
105243471 TTTCTACCTCAAGAAGATAAGACTACAATCTTCAATCTGCTCTCTTGCTACCTTAGAGAGATGAG
1 TTTCTACCTCAAGAAGATAAGACTACAATCTTCAATCTGCTCTCTTGCTACCTCAGAGAGATGAG
* *
105243536 GCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCACCATCTTCGATCTGCT
66 GCTAGTGGCTAAAATCTACTCCCCCACTACCTCGGGAAGATAAGATTCACCATCTTCGATCTGCT
* * *
105243601 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAACTTTAGGGAGAT
131 CCACTACTGCTTAAGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAACTTCAGGGAAAT
*
105243666 AAGACTTGCTTTGATCTACTCTACTGCTATCTCAGGGAGATAAGATCTTCAATCTTCAGTCTGCT
196 AAGACTTGCTTTGATCTACTCTACTGCTATCTCAGAGAGATAAGATCTTCAATCTTCAGTCTGCT
* * *
105243731 TCCTTGCTACTTCAGGAAGATAAGACTATAATCTTCAACTTGCTCTTCTGTTACCTCAAACAGAT
261 TCCTTGCTACCTCAGGAAGATAAGACTATAATCTTCAACCTGCTCTTCTGCTACCTCAAACAGAT
* * * *
105243796 GATATTGGTGGCTAAAATCTACTTCCCTGCTATAAAATACACCATCTTCGATCTGCTCTGCTACT
326 AAGACTGGTGGCTAAAATCTACTCCCCTGCTATAAAATACACCATCTTCGATCTGCTCTGCTACT
105243861 GCTTAGGGAGATAATATCTTTGATCTTCAGTCTGCTACC
391 GCTTAGGGAGATAATATCTTTGATCTTCAGTCTGCTACC
* *
105243900 TTTCTACCTCAATAAGATAAGACTACAATCTTCAA-CATGCTCTCTTGCTTCCTCAGAGAGATGA
1 TTTCTACCTCAAGAAGATAAGACTACAATCTTCAATC-TGCTCTCTTGCTACCTCAGAGAGATGA
* *
105243964 GGCTAGTGGCTAAAATCTGCTCCCCCACTACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGC
65 GGCTAGTGGCTAAAATCTACTCCCCCACTACCTCGGGAAGATAAGATTCACCATCTTCGATCTGC
* * *
105244029 TCCGCTACTGCTTAAGGAGATAAGATCTACAATTTTTAGTCTACTCCACTGCAACTTCAGGGAAA
130 TCCACTACTGCTTAAGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAACTTCAGGGAAA
*
105244094 TAAGACTTGCTTTGATCTGCTCTACTGCTATCTCAGAGAGATAAGATCTTCAATCTTCAGTCTGC
195 TAAGACTTGCTTTGATCTACTCTACTGCTATCTCAGAGAGATAAGATCTTCAATCTTCAGTCTGC
* *
105244159 TTCCTTGCTACCTCAGGAAGATAAGACTATAATCTTCAACCTGCTC-TCTTGCTACCTTAAAGAG
260 TTCCTTGCTACCTCAGGAAGATAAGACTATAATCTTCAACCTGCTCTTC-TGCTACCTCAAACAG
* *
105244223 ATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
324 ATAAGACTGGTGGCTAAAATCTACTCCCCTGCTA
105244257 CCTCGGGAAG
Statistics
Matches: 329, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
428 3 0.01
429 326 0.99
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (429 bp):
TTTCTACCTCAAGAAGATAAGACTACAATCTTCAATCTGCTCTCTTGCTACCTCAGAGAGATGAG
GCTAGTGGCTAAAATCTACTCCCCCACTACCTCGGGAAGATAAGATTCACCATCTTCGATCTGCT
CCACTACTGCTTAAGGAGATAAGATCTACAATCTTGAGTCTACTCCACTGCAACTTCAGGGAAAT
AAGACTTGCTTTGATCTACTCTACTGCTATCTCAGAGAGATAAGATCTTCAATCTTCAGTCTGCT
TCCTTGCTACCTCAGGAAGATAAGACTATAATCTTCAACCTGCTCTTCTGCTACCTCAAACAGAT
AAGACTGGTGGCTAAAATCTACTCCCCTGCTATAAAATACACCATCTTCGATCTGCTCTGCTACT
GCTTAGGGAGATAATATCTTTGATCTTCAGTCTGCTACC
Found at i:105244283 original size:133 final size:132
Alignment explanation
Indices: 105243883--105244283 Score: 338
Period size: 133 Copynumber: 3.0 Consensus size: 132
105243873 AATATCTTTG
* * ** *
105243883 ATCTTCAGTCTGCTACCTTTCTACCTCAATAAGATAAGACTACAATCTTCAACATGCTCTCTTGC
1 ATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGC
* * * **
105243948 TTCCTCAGAGAGATGAGGCTAGTGGCTAAAATCTGCTCCCCCACTACCTCGGGAAGATAAGATTC
66 TACCTTAGAGAGATAAGGCT-GTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTC
105244013 GCC
130 GCC
* * * ** *
105244016 ATCTTC-GATCTGC-TCC--GCTACTGCTTAAGG-AGATAAGATCTACAATTTTTAGTCTACTC-
1 ATCTTCAG-TCTGCTTCCTTGCTAC--C-TCAGGAAGATAAGA-CTACAATCTTCAACCTGCTCT
* * * * * *** ** * *
105244075 CACTGC-AACTTCAGGGAAATAAGACT-T-GCTTTGATCTGCTCTACTGCTATCTC-AGAGAGAT
61 C-TTGCTACCTT-AGAGAGATAAGGCTGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGA-AGAT
* *
105244136 AAGA-TCTTCA
123 AAGATTC-GCC
*
105244146 ATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTATAATCTTCAACCTGCTCTCTTGC
1 ATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGC
*
105244211 TACCTTAAAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTC
66 TACCTTAGAGAGATAAGGCT-GTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTC
105244276 GCC
130 GCC
105244279 ATCTT
1 ATCTT
105244284 TGATTTGCTC
Statistics
Matches: 195, Mismatches: 52, Indels: 42
0.67 0.18 0.15
Matches are distributed among these distances:
129 4 0.02
130 73 0.37
131 19 0.10
132 16 0.08
133 79 0.41
134 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (132 bp):
ATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGC
TACCTTAGAGAGATAAGGCTGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCG
CC
Found at i:105249199 original size:61 final size:60
Alignment explanation
Indices: 105249105--105249231 Score: 227
Period size: 61 Copynumber: 2.1 Consensus size: 60
105249095 GAATGACTGA
105249105 AGAAAGTAAAAAAAAGACTAAAATAATTACTCAAATGGAAAGAATAAAACAATTACTTGT
1 AGAAAGTAAAAAAAAGACTAAAATAATTACTCAAATGGAAAGAATAAAACAATTACTTGT
*
105249165 AGAAAGTAAAAAAAAAGACTAAAATAATTACTCAAATGGAAAGAATAAAATAATTACTTGT
1 AGAAAGT-AAAAAAAAGACTAAAATAATTACTCAAATGGAAAGAATAAAACAATTACTTGT
*
105249226 CGAAAG
1 AGAAAG
105249232 AATGAAAGAA
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
60 7 0.11
61 57 0.89
ACGTcount: A:0.58, C:0.08, G:0.13, T:0.21
Consensus pattern (60 bp):
AGAAAGTAAAAAAAAGACTAAAATAATTACTCAAATGGAAAGAATAAAACAATTACTTGT
Found at i:105252892 original size:15 final size:15
Alignment explanation
Indices: 105252874--105252920 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
105252864 CATATGCCTT
105252874 AAATGAATGAAATGA
1 AAATGAATGAAATGA
*
105252889 AAATGAATGCAAATGT
1 AAATGAATG-AAATGA
* *
105252905 AAATGCATGAGATGA
1 AAATGAATGAAATGA
105252920 A
1 A
105252921 TGTAAAGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.53, C:0.04, G:0.21, T:0.21
Consensus pattern (15 bp):
AAATGAATGAAATGA
Found at i:105252908 original size:16 final size:15
Alignment explanation
Indices: 105252873--105252914 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
105252863 GCATATGCCT
105252873 TAAATGAATGAAATG
1 TAAATGAATGAAATG
*
105252888 AAAATGAATGCAAATG
1 TAAATGAATG-AAATG
*
105252904 TAAATGCATGA
1 TAAATGAATGA
105252915 GATGAATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.52, C:0.05, G:0.19, T:0.24
Consensus pattern (15 bp):
TAAATGAATGAAATG
Found at i:105259163 original size:2 final size:2
Alignment explanation
Indices: 105259156--105259182 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
105259146 CTTTTATTAT
105259156 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
105259183 TTAAAAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105264378 original size:17 final size:18
Alignment explanation
Indices: 105264346--105264388 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
105264336 AACAATAGTT
* *
105264346 TTGTCTCTTATTGAACAG
1 TTGTATCTTATTGAACAA
105264364 TTGTATCTT-TTGAACAA
1 TTGTATCTTATTGAACAA
105264381 TTGTATCT
1 TTGTATCT
105264389 CTTGGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49
Consensus pattern (18 bp):
TTGTATCTTATTGAACAA
Found at i:105265428 original size:27 final size:27
Alignment explanation
Indices: 105265398--105265537 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
105265388 CTCAATTAAC
* *
105265398 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
105265425 AAAATTGCCAAAATA-CCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* ** * *
105265451 GAAATTACCAAAATACTACTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
105265478 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
105265505 GAAATTACCAAAATA-CCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
105265531 GAAATTA
1 AAAATTA
105265538 TTGAAATACC
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 39 0.41
27 57 0.59
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:105265456 original size:53 final size:54
Alignment explanation
Indices: 105265399--105265522 Score: 196
Period size: 53 Copynumber: 2.3 Consensus size: 54
105265389 TCAATTAACA
* *
105265399 AAATTACCAAAATACCCCTGGCTTGTAAAATTGCCAAAATA-CCCTAGTTTGTG
1 AAATTACCAAAATACCCCTGGCTTATAAAATTACCAAAATACCCCTAGTTTGTG
** *
105265452 AAATTACCAAAATACTACTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCTGGCTTATAAAATTACCAAAATACCCCTAGTTTGTG
105265506 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
105265523 TAATTTGTGA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 36 0.57
54 27 0.43
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGCTTATAAAATTACCAAAATACCCCTAGTTTGTG
Found at i:105265536 original size:53 final size:52
Alignment explanation
Indices: 105265399--105265537 Score: 188
Period size: 53 Copynumber: 2.6 Consensus size: 52
105265389 TCAATTAACA
* *
105265399 AAATTACCAAAATACCCCTGGCTTGTAAAATTGCCAAAATACCCTAGTTTGTG
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGTG
* *
105265452 AAATTACCAAAATACTACTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATAC-CCTGGTTTGTAAAATTACCAAAATA-CCCTAGTTTGTG
** *
105265506 AAATTACCAAAATACCCTAATTTGTGAAATTA
1 AAATTACCAAAATACCCTGGTTTGTAAAATTA
105265538 TTGAAATACC
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.01
53 47 0.63
54 27 0.36
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (52 bp):
AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGTG
Found at i:105265590 original size:27 final size:27
Alignment explanation
Indices: 105265533--105265719 Score: 259
Period size: 27 Copynumber: 7.0 Consensus size: 27
105265523 TAATTTGTGA
* *
105265533 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
105265560 -ATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
105265586 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
105265613 AATTACCAAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
105265640 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
105265667 AATTACTGAAATATCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
105265694 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCCTGTAGGGTA
105265720 TATTATCATT
Statistics
Matches: 143, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 24 0.17
27 119 0.83
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:105274031 original size:29 final size:29
Alignment explanation
Indices: 105273989--105274091 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
105273979 GGCCCAATCT
* * *
105273989 CATTTATATGGCCCATCCGGTCCAATTCA
1 CATTCATATGGCCCATCAGGACCAATTCA
*
105274018 CGTTCATATGGCCCATCAGGACCAATTCA
1 CATTCATATGGCCCATCAGGACCAATTCA
* * *
105274047 CATTCATATGGCCCATTAGGCCCAA-TCT
1 CATTCATATGGCCCATCAGGACCAATTCA
* *
105274075 CATTTATATGGTCCATC
1 CATTCATATGGCCCATC
105274092 CGACCCAAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 16 0.25
29 47 0.75
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGACCAATTCA
Found at i:105274109 original size:28 final size:28
Alignment explanation
Indices: 105273992--105274111 Score: 91
Period size: 29 Copynumber: 4.2 Consensus size: 28
105273982 CCAATCTCAT
** * *
105273992 TTATATGGCCCATCCGGTCCAATTCACG
1 TTATATGGCCCATCCGACCCAAATCACA
* *
105274020 TTCATATGGCCCATCAGGA-CCAATTCACA
1 TT-ATATGGCCCATC-CGACCCAAATCACA
** * *
105274049 TTCATATGGCCCATTAGGCCC-AATCTCA
1 TT-ATATGGCCCATCCGACCCAAATCACA
*
105274077 TTTATATGGTCCATCCGACCCAAATCACA
1 -TTATATGGCCCATCCGACCCAAATCACA
105274106 TTATAT
1 TTATAT
105274112 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
28 28 0.38
29 45 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
TTATATGGCCCATCCGACCCAAATCACA
Found at i:105274350 original size:16 final size:16
Alignment explanation
Indices: 105274329--105274366 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
105274319 CAAACTTTTG
105274329 GCTTTTCGGCATTTCA
1 GCTTTTCGGCATTTCA
*
105274345 GCTTTTCGGTATTTCA
1 GCTTTTCGGCATTTCA
105274361 GCTTTT
1 GCTTTT
105274367 GCCGATCTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.11, C:0.21, G:0.18, T:0.50
Consensus pattern (16 bp):
GCTTTTCGGCATTTCA
Found at i:105283222 original size:14 final size:14
Alignment explanation
Indices: 105283203--105283236 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
105283193 TTTTTTAGTT
*
105283203 ATATTAGTATTTTA
1 ATATTAGAATTTTA
105283217 ATATTAGAATTTTA
1 ATATTAGAATTTTA
105283231 ATATTA
1 ATATTA
105283237 ACCTATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (14 bp):
ATATTAGAATTTTA
Found at i:105284411 original size:32 final size:32
Alignment explanation
Indices: 105284369--105284429 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
105284359 AAATATAATT
*
105284369 ATTATCTTTATATGTAAAATATTTCAAATATC
1 ATTATCTTTATATGCAAAATATTTCAAATATC
* * *
105284401 ATTATGTTTATATGCGAAATATTTTAAAT
1 ATTATCTTTATATGCAAAATATTTCAAAT
105284430 GCACATACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (32 bp):
ATTATCTTTATATGCAAAATATTTCAAATATC
Found at i:105285995 original size:11 final size:12
Alignment explanation
Indices: 105285976--105286005 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
105285966 TATTAACATA
105285976 TACTATTATTAT
1 TACTATTATTAT
105285988 TA-TATTATTAT
1 TACTATTATTAT
105285999 TACTATT
1 TACTATT
105286006 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (12 bp):
TACTATTATTAT
Found at i:105286155 original size:3 final size:3
Alignment explanation
Indices: 105286149--105286234 Score: 172
Period size: 3 Copynumber: 28.7 Consensus size: 3
105286139 TTTTTGTTAC
105286149 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
105286197 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
105286235 CATCTACTAT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 83 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:105288382 original size:3 final size:3
Alignment explanation
Indices: 105288374--105288434 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
105288364 ATATATTCAT
105288374 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
105288422 TTA TTA TTC TTA T
1 TTA TTA TTA TTA T
105288435 ATGTAGATAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:105288518 original size:20 final size:19
Alignment explanation
Indices: 105288487--105288528 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
105288477 ATACTATAAG
105288487 ATTATTTTTATCATACATT
1 ATTATTTTTATCATACATT
*
105288506 ATTATTATTTATCATATATT
1 ATTATT-TTTATCATACATT
105288526 ATT
1 ATT
105288529 TTTCACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTATTTTTATCATACATT
Found at i:105288573 original size:22 final size:20
Alignment explanation
Indices: 105288522--105288583 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
105288512 ATTTATCATA
* * * *
105288522 TATTATTTTTCACAAATTAT
1 TATTATTATTAACATATTTT
105288542 TATTATTATTAACATTATTTT
1 TATTATTATTAACA-TATTTT
*
105288563 TATATATTATTAATATATTTT
1 TAT-TATTATTAACATATTTT
105288584 ACTTGTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 12 0.34
21 13 0.37
22 10 0.29
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATTATTAACATATTTT
Found at i:105288732 original size:23 final size:23
Alignment explanation
Indices: 105288684--105288755 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
105288674 ATATATTCAA
105288684 ATTATGTTTTATTCTATA-ACGTTT
1 ATTAT-TTTTATTCTATATACG-TT
105288708 ATTATTTTTATTCTATATTAC-TT
1 ATTATTTTTATTCTATA-TACGTT
* * *
105288731 ATTATTTTTTTTATATATATGTT
1 ATTATTTTTATTCTATATACGTT
105288754 AT
1 AT
105288756 GTATATATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
22 2 0.05
23 33 0.79
24 5 0.12
25 2 0.05
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (23 bp):
ATTATTTTTATTCTATATACGTT
Found at i:105292632 original size:14 final size:14
Alignment explanation
Indices: 105292613--105292642 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
105292603 AAGATATTCT
105292613 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
*
105292627 TTTTCTAAATGAAA
1 TTTTCTAAATAAAA
105292641 TT
1 TT
105292643 GAACTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:105299387 original size:13 final size:14
Alignment explanation
Indices: 105299369--105299398 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
105299359 AGACTTAGCA
105299369 ATTGAG-CTGATGT
1 ATTGAGTCTGATGT
105299382 ATTGAGTCTGATGT
1 ATTGAGTCTGATGT
105299396 ATT
1 ATT
105299399 AATCATCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (14 bp):
ATTGAGTCTGATGT
Found at i:105299528 original size:14 final size:14
Alignment explanation
Indices: 105299509--105299538 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
105299499 AAGATATTCT
105299509 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
*
105299523 TTTTCTAAATGAAA
1 TTTTCTAAATAAAA
105299537 TT
1 TT
105299539 GAACTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:105307983 original size:210 final size:210
Alignment explanation
Indices: 105307621--105308610 Score: 1652
Period size: 210 Copynumber: 4.7 Consensus size: 210
105307611 CATTATCAGG
* *
105307621 GCAGATCCAAGATAACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTG
* * *
105307686 ATTTGGCTTTCACGTGTTTACGATAAAGCAAATCTAAGATGATTTGTCATTTCTGTATGGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATGGTCAGA
105307751 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
105307816 GATGTTTACGCTGAA
196 GATGTTTACGCTGAA
* * *
105307831 GCAGATCCAAGATAACAGATCTTATCTCTCTATATTCGGTGGGGAGCAGATCAAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTG
*
105307896 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATAGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATGGTCAGA
105307961 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
105308026 GATGTTTACGCTGAA
196 GATGTTTACGCTGAA
* *
105308041 GCAGATCCAAGATGACAGATCTTATCTCTATGTATTCGGTGGGGAGCAGATCAAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTG
*
105308106 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATGGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATGGTCAGA
*
105308171 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTCCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
105308236 GATGTTTACGCTGAA
196 GATGTTTACGCTGAA
* *
105308251 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAGCGGGGAGCAGATCAAAGATATGGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTG
* * *
105308316 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTTTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATGGTCAGA
* *
105308381 GAACAAATTGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACCCATAGCAGATCTCACCTTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
*
105308446 GATGTTTACACTGAA
196 GATGTTTACGCTGAA
* * * * *
105308461 GCAAATCCAAGATGACAGATCTTATCTCTTTGTATTCGACGAGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTG
* * * *
105308526 ATTTGGCCTTCACGTGTTTACGAT-----AAAGC-AA-ATGATTTGTCGTTTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATGGTCAGA
*
105308584 GAACAAATCGAAGTCTGGCATCTCCAC
131 GAACAAATCGAAGTCTGGCATTTCCAC
105308611 ATTCAATGGG
Statistics
Matches: 743, Mismatches: 37, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
203 49 0.07
204 2 0.00
205 4 0.01
210 688 0.93
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATGGTCAGA
GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
GATGTTTACGCTGAA
Found at i:105310312 original size:3 final size:3
Alignment explanation
Indices: 105310304--105310370 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
105310294 ATATATTCAT
105310304 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
105310352 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
105310371 ATTCTTATAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:105310378 original size:8 final size:8
Alignment explanation
Indices: 105310308--105310380 Score: 83
Period size: 9 Copynumber: 8.4 Consensus size: 8
105310298 ATTCATTTAT
105310308 TATTATTA
1 TATTATTA
105310316 TTATTATTA
1 -TATTATTA
105310325 TTATTATTA
1 -TATTATTA
105310334 TTATTATTA
1 -TATTATTA
105310343 TTATTATTA
1 -TATTATTA
105310352 TTATTATTA
1 -TATTATTA
105310361 TTATTATTA
1 -TATTATTA
*
105310370 TATTCTTA
1 TATTATTA
105310378 TAT
1 TAT
105310381 GTAGATATTG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
8 10 0.16
9 53 0.84
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTATTA
Found at i:105310467 original size:17 final size:16
Alignment explanation
Indices: 105310431--105310506 Score: 59
Period size: 17 Copynumber: 4.7 Consensus size: 16
105310421 ATACTATAAG
105310431 ATTATTTTTATCATAC
1 ATTATTTTTATCATAC
* *
105310447 ATTATTATTTATTATAT
1 ATTATT-TTTATCATAC
105310464 ATTATTTTTCA-CA-A-
1 ATTATTTTT-ATCATAC
* *
105310478 ATTATTATTATTATTAAC
1 ATTATTTTTATCA-T-AC
105310496 ATTATTTTTAT
1 ATTATTTTTAT
105310507 ATATTTTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
13 1 0.02
14 9 0.19
15 1 0.02
16 10 0.21
17 16 0.34
18 10 0.21
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTATTTTTATCATAC
Found at i:105310469 original size:33 final size:32
Alignment explanation
Indices: 105310431--105310506 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 32
105310421 ATACTATAAG
*
105310431 ATTATTTTTATCATACATTATTA-T-TTATTATAT
1 ATTATTTTTATCA-A-ATTATTATTATTATTA-AC
105310464 ATTATTTTTCA-CAAATTATTATTATTATTAAC
1 ATTATTTTT-ATCAAATTATTATTATTATTAAC
105310496 ATTATTTTTAT
1 ATTATTTTTAT
105310507 ATATTTTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
31 8 0.21
32 12 0.32
33 17 0.45
34 1 0.03
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (32 bp):
ATTATTTTTATCAAATTATTATTATTATTAAC
Found at i:105310672 original size:23 final size:23
Alignment explanation
Indices: 105310624--105310694 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
105310614 ATATATTCAA
105310624 ATTATGTTTTATTCTATA-ACGTTT
1 ATTAT-TTTTATTCTATATACG-TT
105310648 ATTATTTTTATTCTATATTAC-TT
1 ATTATTTTTATTCTATA-TACGTT
* *
105310671 ATTATTTTT-TTATATATATGTT
1 ATTATTTTTATTCTATATACGTT
105310693 AT
1 AT
105310695 GTATATATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 2 0.05
22 10 0.24
23 23 0.55
24 5 0.12
25 2 0.05
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (23 bp):
ATTATTTTTATTCTATATACGTT
Found at i:105317453 original size:37 final size:38
Alignment explanation
Indices: 105317353--105317454 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
105317343 ATATATTTGG
105317353 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
105317389 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
105317431 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
105317455 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:105319141 original size:92 final size:92
Alignment explanation
Indices: 105318958--105319443 Score: 311
Period size: 93 Copynumber: 5.4 Consensus size: 92
105318948 TGCGCCAAGG
* * * * **
105318958 CTCAACTCACTTCTCGCAATATGAGTTGATTTTT-A-AAACA-AAATTTG---TAACACAGATTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAA-TTGAAAAAAAAAAGAAAT
** *
105319017 TGAAAATACCTCGATATGTGACCCGA-A
65 TGAAAATACCTCGACGTGTGACCTGAGA
* **
105319044 GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG-CAAAGCATAAA-T-AAATAAAAAACATC
1 -CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-CATAAATTGAAA-AAAAAA-AGA
105319106 AATTGAAAATACCTCGACGTGTGACCTGAGA
62 AATTGAAAATACCTCGACGTGTGACCTGAGA
*
105319137 CTCAACTCACCTCTCGCAATATTAGTTGATTTTTTTTGACAAACATAAATTGAAAAAAAAAAGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGACAAACATAAATTGAAAAAAAAAAGAA
*
105319202 ATTGAAAATACCTC-AGCGTGT--CCTGAGG
63 ATTGAAAATACCTCGA-CGTGTGACCTGAGA
* * *** *
105319230 CTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATT-TTGAAAAACAGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-GACAAACATAAATTGAAAAAAAAAAGAA
* * * * *
105319293 TTTGAAAATGCCTC-AGCGTGTGA-GTCAAGG
63 ATTGAAAATACCTCGA-CGTGTGACCT-GAGA
* * * * *
105319323 CTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA-AACACAGAAATTG---AAGAACAGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA-ACATAAATTGAAAAAAAAAAGAA
* * * * *
105319384 ATGGAAAACACCTC-A-GCGT--CTTGAGG
63 ATTGAAAATACCTCGACGTGTGACCTGAGA
* *
105319410 TTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
105319444 TTGAAAGACA
Statistics
Matches: 333, Mismatches: 41, Indels: 52
0.78 0.10 0.12
Matches are distributed among these distances:
85 5 0.02
87 62 0.19
88 5 0.02
89 5 0.02
90 3 0.01
91 53 0.16
92 70 0.21
93 82 0.25
94 1 0.00
95 33 0.10
96 11 0.03
97 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (92 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAAAAAAAAAGAAATT
GAAAATACCTCGACGTGTGACCTGAGA
Found at i:105319250 original size:93 final size:92
Alignment explanation
Indices: 105318955--105319464 Score: 398
Period size: 87 Copynumber: 5.6 Consensus size: 92
105318945 AGCTGCGCCA
* * * *
105318955 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTG---TAACACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA-TTGAAAAAAAAAAG
** ** *
105319013 ATTTTGAAAATACCTC-GATATGTGACCCG
65 AAATTGAAAATACCTCAG-CGTGTG-CCTG
* * * *
105319042 AAGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAA-T-AAATAAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAA-AAAAAA-
**
105319103 ATCAATTGAAAATACCTC-GACGTGTGACCTG
63 AGAAATTGAAAATACCTCAG-CGTGTG-CCTG
* * *
105319134 AGACTCAACTCACCTCTCGCAATATTAGTTGATTTTTTTTGACAAACATAAATTGAAAAAAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA-AAACAGAAATTGAAAAAAAAAA
105319199 GAAATTGAAAATACCTCAGCGTGT-CCTG
64 GAAATTGAAAATACCTCAGCGTGTGCCTG
* *** *
105319227 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATT-TTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G-AAAACAGAAATTGAAAAAAAAAA
* * ** *
105319290 GAATTTGAAAATGCCTCAGCGTGTGAGTCA
64 GAAATTGAAAATACCTCAGCGTGTGCCT-G
* * * *
105319320 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTG---AAGAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAAAAAAAG
* * *
105319382 AAATGGAAAACACCTCAGC--GT-CTTG
65 AAATTGAAAATACCTCAGCGTGTGCCTG
* *
105319407 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
105319465 TACCTCAATG
Statistics
Matches: 351, Mismatches: 47, Indels: 47
0.79 0.11 0.11
Matches are distributed among these distances:
87 85 0.24
88 2 0.01
89 7 0.02
90 4 0.01
91 56 0.16
92 69 0.20
93 80 0.23
94 2 0.01
95 35 0.10
96 8 0.02
97 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (92 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAAAAGA
AATTGAAAATACCTCAGCGTGTGCCTG
Found at i:105319296 original size:14 final size:15
Alignment explanation
Indices: 105319262--105319300 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
105319252 GAGTTGATTT
105319262 TTTTGGAAAAACAAAA
1 TTTT-GAAAAACAAAA
*
105319278 TTTTGAAAAACAGAA
1 TTTTGAAAAACAAAA
105319293 -TTTGAAAA
1 TTTTGAAAA
105319301 TGCCTCAGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.36
15 10 0.45
16 4 0.18
ACGTcount: A:0.54, C:0.05, G:0.13, T:0.28
Consensus pattern (15 bp):
TTTTGAAAAACAAAA
Found at i:105319375 original size:91 final size:86
Alignment explanation
Indices: 105318955--105319879 Score: 397
Period size: 87 Copynumber: 10.7 Consensus size: 86
105318945 AGCTGCGCCA
* * * * **
105318955 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTGTAACACAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAA-TTGAAAAACAGAAA
** **
105319016 TTGAAAATACCTCGATATGTGACCCG
65 TTGAAAATACCTC-A-GCGTG--TTG
* * * * * * *
105319042 AAGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATAAATAAAAAACAT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAAACAGAAAT---TGAAAAACAG
*
105319105 CAATTGAAAATACCTC-GACGTGTGACCTG
62 AAATTGAAAATACCTCAG-CGTGT----TG
* * * * *
105319134 AGACTCAACTCACCTCTCGCAATATTAGTTGATTTTTTTTGACAAACATAAATTGAAAAAAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTGA-AAACAGAAATTG---AAAAACA
105319199 GAAATTGAAAATACCTCAGCGTGTCCTG
61 GAAATTGAAAATACCTCAGCGTGT--TG
* *
105319227 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTTGAAAAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-G-AAAACAGAAA--TTGAAAAACAG
* * *
105319291 AATTTGAAAATGCCTCAGCGTGTGAGTCA
62 AAATTGAAAATACCTCAGCGTGT---T-G
* *
105319320 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAAACAGAAA
* * *
105319385 TGGAAAACACCTCAGCGTCTTG
65 TTGAAAATACCTCAGCGTGTTG
*
105319407 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATAC----
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAA-ACAGAA
* * * *
105319468 -CT---CA-A--T--GTGTCTTG
64 ATTGAAAATACCTCAGCGTGTTG
* ** * * **
105319482 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAACTTAACTTGAAAAGCAGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAACAGAAAT
** **
105319544 TGAAAATACCTCGATATGTGACTCA
66 TGAAAATACCTC-A-GCGTG--TTG
* * * * **
105319569 AGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAGTA-A-AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAAACAGAAATTGAAAAACAGAAA
* *
105319630 ---AAAATACCTTAGTGTGTGATCTG
65 TTGAAAATACCTCA--GCGTG-T-TG
* * *
105319653 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTG-AAAATAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTTTGAAA-ACAGAAATTGAAAAACAG
* * * * * * ***
105319717 ---CT-----CAGCGCA-TGAGCCA
62 AAATTGAAAATACCTCAGCGTGTTG
* *
105319733 AGGCTCAACTCACCTCTCGCAATATGAG-TCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCT-GATTTTTTTGAAA-ACAGAAATTGAAAAACAGAA
*
105319797 ATTG-AAATACCTCGGCGTGTGACCTG
64 ATTGAAAATACCTCAGCGTGT----TG
* * * *
105319823 AGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGAAAGACAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAA
105319880 TTACCTCAGC
Statistics
Matches: 655, Mismatches: 109, Indels: 145
0.72 0.12 0.16
Matches are distributed among these distances:
70 1 0.00
71 11 0.02
72 2 0.00
73 6 0.01
75 38 0.06
77 22 0.03
78 6 0.01
79 3 0.00
80 30 0.05
81 2 0.00
82 3 0.00
83 2 0.00
84 44 0.07
85 9 0.01
86 2 0.00
87 127 0.19
88 9 0.01
89 32 0.05
90 57 0.09
91 60 0.09
92 64 0.10
93 78 0.12
94 5 0.01
95 41 0.06
96 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAACAGAAAT
TGAAAATACCTCAGCGTGTTG
Found at i:105319500 original size:75 final size:73
Alignment explanation
Indices: 105319378--105319518 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 73
105319368 AAATTGAAGA
*
105319378 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
105319443 TTTGAAAG
66 TTTGAAAG
* * * *
105319451 ACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
105319516 TTT
64 TTT
105319519 GAAACTTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 18 0.30
74 1 0.02
75 42 0.69
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (73 bp):
ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTGAAAG
Found at i:105319687 original size:84 final size:85
Alignment explanation
Indices: 105319482--105319689 Score: 237
Period size: 84 Copynumber: 2.4 Consensus size: 85
105319472 ATGTGTCTTG
* * ***
105319482 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATTAAATTG-AAAGCAGA-TAAAA
*
105319547 AAATACCTCGATATGTGACTCA
64 AAATACCTAGATATGTGACTCA
* *
105319569 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAATATAAATTG-AAGTA-A-AAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAT-TAAATTGAAAGCAGATAAAA
* *
105319631 AAATACCTTAG-TGTGTGATCTGA
64 AAATACC-TAGATATGTGA-CTCA
105319654 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
105319690 TTTTTGAAAG
Statistics
Matches: 106, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
84 48 0.45
85 6 0.06
86 1 0.01
87 41 0.39
88 4 0.04
89 6 0.06
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATTAAATTGAAAGCAGATAAAAAA
ATACCTAGATATGTGACTCA
Found at i:105319694 original size:249 final size:248
Alignment explanation
Indices: 105318955--105319859 Score: 710
Period size: 249 Copynumber: 3.5 Consensus size: 248
105318945 AGCTGCGCCA
* * *
105318955 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGTAACACAGATTTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTG-AAAACAGATTTTGA
* *
105319020 AAATACCTCGATATGTGACCCGAA-GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAA
65 AAATACCTCGATATGTGACTC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA
* * * *
105319084 GCATAAATAAA-T-AAAAAACATCAATTGAAAATACCTCGACGTGTGACCTG-AGACTCAACTCA
128 --A-AAATAAATTGAAGAAACA--AA--GAAAATACCT-TAGGTGTGATCTGAAG-CTCAACTCA
* * *
105319146 CCTCTCGCAATATTAGTTGATTTTTTTTGACAAACATAAATTGAAAAAAAAAAGAAATTGAAAAT
184 CCTCTCGCAATATGAGTTGA-TTTTTTT--------T---TTG---AAAGACAGAAATTGAAAAT
**
105319211 ACCTCAGCGTGTCCTG
234 ACCTCAATGTGT-CTG
*
105319227 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-G--AAACAAAA-TTTG-AAAACAGA
* * ** * * *
105319292 ATTTGAAAATGCCTC-AGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTT
59 TTTTGAAAATACCTCGA-TATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
* * * * * * * * * *
105319356 TTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCA-GCGT-CT-TGAGGTTCAACTC
121 TTTGAAAAAAATAAATTGAAGAA-ACAAA--GAAAATACCTTAGGTGTGATCTGAAGCTCAACTC
*
105319418 ACCTCTCGCAATATGAGCTGA---TTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGTGTCT
183 ACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGTGTC-
105319480 TG
247 TG
** *
105319482 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAA-CAGATTTTGA
*
105319547 AAATACCTCGATATGTGACTCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAA
65 AAATACCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* *
105319612 TATAAATTGAAGTAA-AAA-AAAATACCTTAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAA
130 AATAAATTGAAGAAACAAAGAAAATACCTTAG-GTGTGATCTGAAGCTCAACTCACCTCTCGCAA
* * **
105319675 TATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCATGAG-CCA
194 TATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA----ATGTGTCTG
* * *
105319733 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAA-TTGAAAAACGGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA--CA-AAATTTG-AAAACAGAT
* *** * * * *
105319797 ATTG-AAATACCTCGGCGTGTGAC-CTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTT
60 TTTGAAAATACCTCGATATGTGACTC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
105319860 TTGAAAGACA
Statistics
Matches: 524, Mismatches: 74, Indels: 88
0.76 0.11 0.13
Matches are distributed among these distances:
242 9 0.02
244 3 0.01
245 4 0.01
246 32 0.06
247 21 0.04
248 4 0.01
249 89 0.17
250 7 0.01
251 31 0.06
252 2 0.00
253 19 0.04
254 50 0.10
255 70 0.13
256 6 0.01
258 3 0.01
261 1 0.00
269 4 0.01
272 30 0.06
273 28 0.05
274 6 0.01
275 3 0.01
276 6 0.01
277 24 0.05
278 61 0.12
279 5 0.01
280 6 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (248 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAACAGATTTTGAA
AATACCTCGATATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
ATAAATTGAAGAAACAAAGAAAATACCTTAGGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGTGTCTG
Found at i:105319917 original size:75 final size:75
Alignment explanation
Indices: 105319784--105319934 Score: 223
Period size: 75 Copynumber: 2.0 Consensus size: 75
105319774 AAGGCAGAAA
* * *
105319784 TTGAAAAACGGAAATTGAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACG
1 TTGAAAAACAGAAATTGAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACG
105319849 AGTTGATTTTT
65 AGTTGATTTTT
* * *
105319860 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAA-TACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACG
105319924 AGTTGATTTTT
65 AGTTGATTTTT
105319935 AAAAAGTAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
75 38 0.56
76 18 0.26
77 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGA
GTTGATTTTT
Found at i:105320002 original size:54 final size:55
Alignment explanation
Indices: 105319902--105320007 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
105319892 GTCCTGAGGC
* * *
105319902 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* *
105319956 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
105320008 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 35 0.78
55 10 0.22
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:105320014 original size:13 final size:13
Alignment explanation
Indices: 105319987--105320020 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
105319977 GAGTTGATTC
*
105319987 TTGAACAACATAAA
1 TTGAA-AACAGAAA
105320001 TTGAAAACAGAAA
1 TTGAAAACAGAAA
105320014 TTGAAAA
1 TTGAAAA
105320021 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:105320119 original size:140 final size:141
Alignment explanation
Indices: 105319860--105320120 Score: 445
Period size: 140 Copynumber: 1.9 Consensus size: 141
105319850 GTTGATTTTT
* *
105319860 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
105319925 GTTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
105319990 AACAACATAAA
131 AACAACATAAA
*
105320001 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGGGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
105320065 GCTGATTTTGAAAAAGTAGAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
105320121 CAATTTAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
140 105 0.93
141 8 0.07
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (141 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
AACAACATAAA
Found at i:105320235 original size:71 final size:70
Alignment explanation
Indices: 105320092--105320267 Score: 239
Period size: 71 Copynumber: 2.5 Consensus size: 70
105320082 AGAAATTAAA
* * * * * *
105320092 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAATTAAAAATACCTCAACGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACATG
105320156 CCCCG
66 CCCCG
105320161 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACAT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAACAT
* **
105320226 GTCTTG
65 GCCCCG
105320232 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
105320268 CCTTGAAAAG
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
69 26 0.27
70 6 0.06
71 63 0.66
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACATG
CCCCG
Found at i:105328347 original size:116 final size:114
Alignment explanation
Indices: 105328098--105328521 Score: 350
Period size: 116 Copynumber: 3.7 Consensus size: 114
105328088 CCTTAAATAC
* * ** * * * *
105328098 AAAAAACTGATATAAGATTCTTCAAAAAAATTAATAAAATAAATTAATCAAACC-TTAATACAAA
1 AAAAAAATGATATAAGATACCACAAAAACATTAATAAAACAAACTAATCATACCTTTAATACAAA
* * * *
105328162 CTTAAAGCT-AAT-AAAACACAACAACAAAAAATAACATTTCAAGTAAAC-AC
66 C-TAAAACTAAATAAAAAAACAACAACAAAAAATATC-TTT-AA-TAAACTAA
* * *
105328212 AAAAAACTAATATAAGATACCACAAAAACATTAATAAAACAAATTAATCATACCTTTAATACAAA
1 AAAAAAATGATATAAGATACCACAAAAACATTAATAAAACAAACTAATCATACCTTTAATACAAA
105328277 TCTAAAACTAAATAAAAAAAC-ACAACAAAAAATATCTTTAATACAAACTAA
66 -CTAAAACTAAATAAAAAAACAACAACAAAAAATATCTTTAAT--AAACTAA
* * * * * * *
105328328 AAAAAAATGATATAAGATACGACAATAACATTAATAAAATAGACTAATTATACATTTAAAACAAA
1 AAAAAAATGATATAAGATACCACAAAAACATTAATAAAACAAACTAATCATACCTTTAATACAAA
* * *
105328393 CTTAAA-TCAAATAAAACACAACAACAACAAAAATATTTCTTT--TAAA-TAT
66 CTAAAACT-AAATAAAA-A-AACAACAACAAAAA-ATATCTTTAATAAACTAA
** * * * * *
105328442 AAAAAAAT-ATTATAAGATGTCATAAAAA-AATAATAAAACAAACAAATCATACTTTTAATATAA
1 AAAAAAATGA-TATAAGATACCACAAAAACATTAATAAAACAAACTAATCATACCTTTAATACAA
* *
105328505 ACTTAAACTTAA-AAAAA
65 ACTAAAACTAAATAAAAA
105328522 TTACTTTTCA
Statistics
Matches: 258, Mismatches: 38, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
111 1 0.00
112 4 0.02
113 38 0.15
114 74 0.29
115 39 0.15
116 75 0.29
117 10 0.04
118 10 0.04
119 7 0.03
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (114 bp):
AAAAAAATGATATAAGATACCACAAAAACATTAATAAAACAAACTAATCATACCTTTAATACAAA
CTAAAACTAAATAAAAAAACAACAACAAAAAATATCTTTAATAAACTAA
Found at i:105329876 original size:23 final size:24
Alignment explanation
Indices: 105329848--105329896 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
105329838 AATAGCGTTA
*
105329848 TTTTTAT-TTTGGTCACTCTAATT
1 TTTTTATATTTGATCACTCTAATT
105329871 TTTTTATCAATTTGATCACTCTAATT
1 TTTTTAT--ATTTGATCACTCTAATT
105329897 AAGATAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
26 15 0.68
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.57
Consensus pattern (24 bp):
TTTTTATATTTGATCACTCTAATT
Found at i:105331915 original size:18 final size:18
Alignment explanation
Indices: 105331888--105331926 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
105331878 ACATTAAGAT
105331888 ATAGTAATAATGA-TAATA
1 ATAGTAATAAT-ATTAATA
*
105331906 ATAGTGATAATATTAATA
1 ATAGTAATAATATTAATA
105331924 ATA
1 ATA
105331927 TTAGAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (18 bp):
ATAGTAATAATATTAATA
Found at i:105336861 original size:14 final size:14
Alignment explanation
Indices: 105336842--105336876 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
105336832 GTTGATTTTT
**
105336842 TTGAAAAGCAGGAA
1 TTGAAAAGCAAAAA
105336856 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
105336870 TTGAAAA
1 TTGAAAA
105336877 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAAAAA
Found at i:105336951 original size:14 final size:14
Alignment explanation
Indices: 105336932--105336966 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
105336922 TTGATTTTTT
*
105336932 TTGAAAAGCAGGAA
1 TTGAAAAGCAGAAA
105336946 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
105336960 TTGAAAA
1 TTGAAAA
105336967 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:105336974 original size:90 final size:89
Alignment explanation
Indices: 105336543--105337371 Score: 1141
Period size: 89 Copynumber: 9.4 Consensus size: 89
105336533 GACCTAGGAT
*
105336543 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAGCAGGAATTGAAAAGCAAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAAT
* * * * *
105336608 TAAAAATACCTTAACGTACCCCGAGGC
63 TGAAAATACCTCAGCGTGCCCTGAGGC
* * * * **
105336635 TTAACTCACCTCTCGCCATATGAGTTGA--TTTTTGAAAA-C-TGAATTTGAAAAACAGATTTTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAA-TTGAAAAGCAGAAATTG
105336696 AAAATACCTC-GACATGTGACCC-GAGGC
65 AAAATACCTCAG-C--GTG-CCCTGAGGC
* * * *
105336723 TCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATTGAA---AAAAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCA-GGAATTGAAAAGCAGAAATTG
* * *
105336784 AATATACCTCTGCGTGTCCTGAGGC
65 AAAATACCTCAGCGTGCCCTGAGGC
* *
105336809 TCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAGCAAAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGA
105336874 AAATACCTCAGCGTGCCCTGAGGC
66 AAATACCTCAGCGTGCCCTGAGGC
105336898 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTG
105336963 AAAATACCTCAGCGTGCCCTGAGGC
65 AAAATACCTCAGCGTGCCCTGAGGC
105336988 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTG
105337053 AAAATACCTCAGCGTGCCCTGAGGC
65 AAAATACCTCAGCGTGCCCTGAGGC
* * **
105337078 TCAACTCACCTCTGGCAATATGAGTTGATTTTTTTGAAAAGCAGTAATTGAAAAATAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGA
* *
105337143 AAATACCTCAGCATACCCTGAGGC
66 AAATACCTCAGCGTGCCCTGAGGC
*
105337167 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAACCAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGA
*
105337232 AAATACCTTAGCGTGCCCTGAGGC
66 AAATACCTCAGCGTGCCCTGAGGC
* * * * *
105337256 TCAACTCACCTCTCACAATATGAGTTGA----TTTCAAACG-A-AAATTGAAAATCAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGA
105337315 AAATACCTCAGCGTGCCCTGAGGC
66 AAATACCTCAGCGTGCCCTGAGGC
105337339 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
105337372 GACAAGCAGA
Statistics
Matches: 668, Mismatches: 49, Indels: 45
0.88 0.06 0.06
Matches are distributed among these distances:
83 69 0.10
84 1 0.00
85 12 0.02
86 60 0.09
87 24 0.04
88 54 0.08
89 240 0.36
90 178 0.27
92 30 0.04
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (89 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTGA
AAATACCTCAGCGTGCCCTGAGGC
Found at i:105336999 original size:179 final size:178
Alignment explanation
Indices: 105336543--105337371 Score: 1141
Period size: 179 Copynumber: 4.7 Consensus size: 178
105336533 GACCTAGGAT
* *
105336543 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAGCAGGAATTGAAAAGCAAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAGCAGGAATTGAAAAACAGAAAT
* * * * * * *
105336608 TAAAAATACCTTAACGTACCCCGAGGCTTAACTCACCTCTCGCCATATGAGTTGA--TTTTTGAA
63 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * **
105336671 AA-C-TGAATTTGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCC-GAGGC
128 AAGCAGGAA-TTGAAAAGCAGAAATTGAAAATACCTCAG-C--GTG-CCCTGAGGC
* * *
105336723 TCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATTGAA---AAAAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCA-GGAATTGAAAAACAGAAATTG
* * * *
105336784 AATATACCTCTGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAA
65 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
*
105336849 GCAGGAATTGAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGC
130 GCAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
*
105336898 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAGCAGGAATTGAAAAGCAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGCAGGAATTGAAAAACAGAAATTG
105336963 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA
65 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA
105337028 AGCAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
129 AGCAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
* * *
105337078 TCAACTCACCTCTGGCAATATGAGTTGATTTTTTTGAAAAGCAGTAATTGAAAAATAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAACAGAAATTGA
* *
105337143 AAATACCTCAGCATACCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
66 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
* *
105337208 CAGGAATTGAAAACCAGAAATTGAAAATACCTTAGCGTGCCCTGAGGC
131 CAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
* * * * *
105337256 TCAACTCACCTCTCACAATATGAGTTGA----TTTCAAACG-A-AAATTGAAAATCAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAACAGAAATTGA
105337315 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
66 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
105337372 GACAAGCAGA
Statistics
Matches: 589, Mismatches: 47, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
172 73 0.12
173 1 0.00
174 64 0.11
175 35 0.06
176 26 0.04
177 41 0.07
178 89 0.15
179 146 0.25
180 114 0.19
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (178 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGGAATTGAAAAACAGAAATTGA
AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
CAGGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
Found at i:105337041 original size:14 final size:14
Alignment explanation
Indices: 105337022--105337056 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
105337012 TTGATTTTTT
*
105337022 TTGAAAAGCAGGAA
1 TTGAAAAGCAGAAA
105337036 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
105337050 TTGAAAA
1 TTGAAAA
105337057 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Done.