Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 365 of 427
Found at i:105925170 original size:30 final size:30
Alignment explanation
Indices: 105925134--105925192 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
105925124 CCCGAGCCTA
105925134 GGGGCAAAA-GTGTAATTATGCAAAAGTTTC
1 GGGGCAAAATG-GTAATTATGCAAAAGTTTC
* *
105925164 GGGGCAAAATGGTAATTTTGCCAAAGTTT
1 GGGGCAAAATGGTAATTATGCAAAAGTTT
105925193 GTATTAAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (30 bp):
GGGGCAAAATGGTAATTATGCAAAAGTTTC
Found at i:105925664 original size:47 final size:47
Alignment explanation
Indices: 105925613--105925786 Score: 214
Period size: 47 Copynumber: 3.7 Consensus size: 47
105925603 TGGTTGAACA
105925613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
* *
105925660 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAAT--G
* *
105925705 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
* * *
105925753 CCCGAGCTCGTTGAGTTAAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
105925787 GGGGCGGGTT
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
44 5 0.05
45 1 0.01
46 33 0.30
47 58 0.53
48 3 0.03
50 6 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
Found at i:105931580 original size:12 final size:12
Alignment explanation
Indices: 105931560--105931592 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
105931550 GCAATCAGAA
105931560 CCCTCAAACTAT
1 CCCTCAAACTAT
*
105931572 CCGTCAAACTAT
1 CCCTCAAACTAT
105931584 CCCTCAAAC
1 CCCTCAAAC
105931593 CGTCCTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.33, C:0.42, G:0.03, T:0.21
Consensus pattern (12 bp):
CCCTCAAACTAT
Found at i:105935404 original size:23 final size:22
Alignment explanation
Indices: 105935363--105935408 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
105935353 CGTGCCAAGG
105935363 TCCCATTTATTTTTCTTTTTTT
1 TCCCATTTATTTTTCTTTTTTT
105935385 TCCCATTTATTTTTCTTTTTTT
1 TCCCATTTATTTTTCTTTTTTT
105935407 TC
1 TC
105935409 ATTTTTTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.72
Consensus pattern (22 bp):
TCCCATTTATTTTTCTTTTTTT
Found at i:105936178 original size:22 final size:22
Alignment explanation
Indices: 105936153--105936227 Score: 69
Period size: 24 Copynumber: 3.2 Consensus size: 22
105936143 TTTTTACAGA
*
105936153 TATTGTTTATATTAAACTTATT
1 TATTATTTATATTAAACTTATT
* *
105936175 TATTTATTTATTTTTAAATCTCTCACT
1 TA-TTATTTA-TATTAAA-CT-T-ATT
*
105936202 TATTATTTATATTAAACTTGTT
1 TATTATTTATATTAAACTTATT
105936224 TATT
1 TATT
105936228 TTGTTATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
22 7 0.17
23 7 0.17
24 8 0.19
25 8 0.19
26 8 0.19
27 4 0.10
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (22 bp):
TATTATTTATATTAAACTTATT
Found at i:105936226 original size:49 final size:47
Alignment explanation
Indices: 105936153--105936307 Score: 170
Period size: 49 Copynumber: 3.2 Consensus size: 47
105936143 TTTTTACAGA
* *
105936153 TATTGTTTATATTAAACTTATTTATTTATTTATTTTTAAATCTCTCACT
1 TATTATTTATATTAAACTTATTTATTTATTTA-TTTTAAATCTTTCA-T
*
105936202 TATTATTTATATTAAACTTGTTTATTT-TGTTATTTTAAATCTTTCAT
1 TATTATTTATATTAAACTTATTTATTTAT-TTATTTTAAATCTTTCAT
* * * * *
105936249 ATGTTATTTATTTTTAAACTTACTTATTTTATTCATTATAAATCTTTCA-
1 -TATTATTTA-TATTAAACTTATTTA-TTTATTTATTTTAAATCTTTCAT
105936298 TATTATTTAT
1 TATTATTTAT
105936308 TTTGAACAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
47 2 0.02
48 30 0.33
49 40 0.44
50 18 0.20
51 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (47 bp):
TATTATTTATATTAAACTTATTTATTTATTTATTTTAAATCTTTCAT
Found at i:105936261 original size:25 final size:25
Alignment explanation
Indices: 105936178--105936611 Score: 165
Period size: 25 Copynumber: 17.2 Consensus size: 25
105936168 ACTTATTTAT
*
105936178 TTATTTATTTTTAAATCTCTCACT-TA
1 TTATTTA-TTTTAAATCTTTCA-TATA
*
105936204 TTATTTATATTAAA-CTTGT--T-TA
1 TTATTTATTTTAAATCTT-TCATATA
* *
105936226 TTTTGTTATTTTAAATCTTTCATATG
1 TTAT-TTATTTTAAATCTTTCATATA
* * *
105936252 TTATTTATTTTTAAA-CTTACTTATT
1 TTATTTA-TTTTAAATCTTTCATATA
* *
105936277 TTATTCATTATAAATCTTTC--ATA
1 TTATTTATTTTAAATCTTTCATATA
105936300 TTATTTATTTTGAACAGT-TTT-AT-TA
1 TTATTTATTTT-AA-A-TCTTTCATATA
* * *
105936325 TTATTTATTTTAATTTTTTTATATA
1 TTATTTATTTTAAATCTTTCATATA
* * *
105936350 GTATTTATTTTAAATTTTTTTATCATA
1 TTATTTATTTTAAA-TCTTTCAT-ATA
** *
105936377 TTATTTATTTT-AAT-TTGTTTTGTA
1 TTATTTATTTTAAATCTT-TCATATA
* *
105936401 TTA-TTATTTTAAATTATTTTATATA
1 TTATTTATTTTAAA-TCTTTCATATA
* *
105936426 TTATTTACTTTAAATTGCTTT-ATAAA
1 TTATTTATTTTAAA-T-CTTTCATATA
* * * * *
105936452 CTATTTATTTCAAACTGTTTTATATC
1 TTATTTATTTTAAA-TCTTTCATATA
*
105936478 TTATTTATGTTAAAAT-TTAT-ATATA
1 TTATTTAT-TTTAAATCTT-TCATATA
* * * * *
105936503 TTGTTTATTCTGAACCATTTTATATA
1 TTATTTATTTTAAATC-TTTCATATA
105936529 TTATTTA-TTTAAATTTTCTTTTTCATATA
1 TTATTTATTTTAAA---TC--TTTCATATA
*
105936558 TTATTTATTTTAAA-CTATT-GTATA
1 TTATTTATTTTAAATCT-TTCATATA
* *
105936582 -TATTATCTTTTAAAT-TTTTATATA
1 TTATT-TATTTTAAATCTTTCATATA
105936606 TTATTT
1 TTATTT
105936612 TTTATACTCC
Statistics
Matches: 318, Mismatches: 50, Indels: 82
0.71 0.11 0.18
Matches are distributed among these distances:
22 7 0.02
23 37 0.12
24 48 0.15
25 99 0.31
26 84 0.26
27 21 0.07
28 1 0.00
29 15 0.05
30 6 0.02
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (25 bp):
TTATTTATTTTAAATCTTTCATATA
Found at i:105936326 original size:50 final size:48
Alignment explanation
Indices: 105936204--105936313 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 48
105936194 CTCTCACTTA
* ** * *
105936204 TTATTTATATT-AAACTTGTTTATTTTGTTATTTTAAATCTTTCATATG
1 TTATTTATTTTGAAACTTACTTATTTTATTATTATAAATCTTTCATA-G
*
105936252 TTATTTATTTTTAAACTTACTTATTTTATTCATTATAAATCTTTCATA-
1 TTATTTATTTTGAAACTTACTTATTTTATT-ATTATAAATCTTTCATAG
105936300 TTATTTATTTTGAA
1 TTATTTATTTTGAA
105936314 CAGTTTTATT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
48 23 0.43
49 15 0.28
50 16 0.30
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (48 bp):
TTATTTATTTTGAAACTTACTTATTTTATTATTATAAATCTTTCATAG
Found at i:105936372 original size:26 final size:26
Alignment explanation
Indices: 105936297--105936611 Score: 238
Period size: 26 Copynumber: 12.3 Consensus size: 26
105936287 TAAATCTTTC
* ***
105936297 ATATTATTTATTTTGAACAGTTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
105936323 -TATTATTTATTTT-AATTTTTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
*
105936347 ATAGTATTTATTTTAAATTTTTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
*
105936373 CATATTATTTATTTT-AATTTGTTT-T
1 -ATATTATTTATTTTAAATTTTTTTAT
* *
105936398 GTATTA-TTATTTTAAATTATTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
* **
105936423 ATATTATTTACTTTAAATTGCTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
* * * * *
105936449 AAACTATTTATTTCAAACTGTTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
* * * *
105936475 ATCTTATTTATGTTAAA-ATTTATAT
1 ATATTATTTATTTTAAATTTTTTTAT
* * * ***
105936500 ATATTGTTTATTCTGAACCATTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
105936526 ATATTATTTA-TTTAAATTTTCTTTTTCAT
1 ATATTATTTATTTTAAA--TT-TTTTT-AT
* * *
105936555 ATATTATTTATTTTAAACTATTGTAT
1 ATATTATTTATTTTAAATTTTTTTAT
*
105936581 ATATTA--TCTTTTAAA--TTTTTAT
1 ATATTATTTATTTTAAATTTTTTTAT
105936603 ATATTATTT
1 ATATTATTT
105936612 TTTATACTCC
Statistics
Matches: 228, Mismatches: 47, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
22 11 0.05
23 7 0.03
24 29 0.13
25 53 0.23
26 89 0.39
27 16 0.07
28 5 0.02
29 12 0.05
30 6 0.03
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.61
Consensus pattern (26 bp):
ATATTATTTATTTTAAATTTTTTTAT
Found at i:105936438 original size:76 final size:77
Alignment explanation
Indices: 105936295--105936441 Score: 201
Period size: 76 Copynumber: 1.9 Consensus size: 77
105936285 TATAAATCTT
* * *
105936295 TCATATTATTTATTTTGAACAGTTTTATTATTATTTATTTTAATTTTTTTATATAGTATTTATTT
1 TCATATTATTTATTTTGAACAGTTTTAGTATTATTTATTTTAATTATTTTATATAGTATTTACTT
105936360 TAAATTTTTTTA
66 TAAATTTTTTTA
** *
105936372 TCATATTATTTATTTT-AATTTGTTTT-GTATTA-TTATTTTAAATTATTTTATATATTATTTAC
1 TCATATTATTTATTTTGAA-CAGTTTTAGTATTATTTATTTT-AATTATTTTATATAGTATTTAC
105936434 TTTAAATT
64 TTTAAATT
105936442 GCTTTATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
75 7 0.11
76 34 0.55
77 21 0.34
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (77 bp):
TCATATTATTTATTTTGAACAGTTTTAGTATTATTTATTTTAATTATTTTATATAGTATTTACTT
TAAATTTTTTTA
Found at i:105936448 original size:76 final size:77
Alignment explanation
Indices: 105936295--105936461 Score: 198
Period size: 76 Copynumber: 2.2 Consensus size: 77
105936285 TATAAATCTT
* * *
105936295 TCATATTATTTATTTTGAACAGTTTTATTATTATTTATTTTAATTTTTTTATATAGTATTTATTT
1 TCATATTATTTATTTTGAACAGTTTTAGTATTATTTATTTTAATTATTTTATATAGTATTTACTT
**
105936360 TAAATTTTTTTA
66 TAAATTGCTTTA
** *
105936372 TCATATTATTTATTTT-AATTTGTTTT-GTATTA-TTATTTTAAATTATTTTATATATTATTTAC
1 TCATATTATTTATTTTGAA-CAGTTTTAGTATTATTTATTTT-AATTATTTTATATAGTATTTAC
105936434 TTTAAATTGCTTTA
64 TTTAAATTGCTTTA
* *
105936448 T-AAACTATTTATTT
1 TCATATTATTTATTT
105936462 CAAACTGTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
75 18 0.23
76 39 0.50
77 21 0.27
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (77 bp):
TCATATTATTTATTTTGAACAGTTTTAGTATTATTTATTTTAATTATTTTATATAGTATTTACTT
TAAATTGCTTTA
Found at i:105937993 original size:39 final size:41
Alignment explanation
Indices: 105937948--105938034 Score: 124
Period size: 41 Copynumber: 2.2 Consensus size: 41
105937938 ATACATTAGA
* *
105937948 GGCGTTTGT-CC-GAAACGCCACTAAAAGCTAAACTATAGC
1 GGCGTTTGTGCCAAAAACGCCACTAAAAGCTAAACAATAGC
* *
105937987 GGCGTTTTTGCCAAAAACGCCACTAAAAGCTAATCAATAGC
1 GGCGTTTGTGCCAAAAACGCCACTAAAAGCTAAACAATAGC
105938028 GGCGTTT
1 GGCGTTT
105938035 TAATCTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 8 0.19
40 2 0.05
41 32 0.76
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (41 bp):
GGCGTTTGTGCCAAAAACGCCACTAAAAGCTAAACAATAGC
Found at i:105938105 original size:72 final size:72
Alignment explanation
Indices: 105937988--105938126 Score: 174
Period size: 72 Copynumber: 1.9 Consensus size: 72
105937978 AACTATAGCG
* * *
105937988 GCGTTTTTGCCAAAAACGCCACTAAAAGCTAATCAATAGCGGCGTTTTAATCTC-AAATGCCACT
1 GCGTTTTTGCCAAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTAATC-CAAAACGCCACT
105938052 AAATTGCA
65 AAATTGCA
* * * * *
105938060 GCGTTTTTGTCC-CAAACGCCACAAAAAACTGATCAATTGTGGCGTTTTTATCCAAAACGCCACT
1 GCGTTTTTG-CCAAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTAATCCAAAACGCCACT
105938124 AAA
65 AAA
105938127 AACTGATTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
71 1 0.02
72 54 0.95
73 2 0.04
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (72 bp):
GCGTTTTTGCCAAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTAATCCAAAACGCCACTA
AATTGCA
Found at i:105938118 original size:41 final size:40
Alignment explanation
Indices: 105938060--105938168 Score: 137
Period size: 41 Copynumber: 2.6 Consensus size: 40
105938050 CTAAATTGCA
* *
105938060 GCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAATTGTG
1 GCGTTTTTGT-CCAAACGCCACAAAAAACTGATCAATAGCG
* * *
105938101 GCGTTTTTATCCAAAACGCCACTAAAAACTGATTAATAGCG
1 GCGTTTTTGTCC-AAACGCCACAAAAAACTGATCAATAGCG
*
105938142 GCGTTTTTGGTCCAAACGCCGCAAAAA
1 GCGTTTTT-GTCCAAACGCCACAAAAA
105938169 GTTTAGCAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.03
41 53 0.91
42 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
GCGTTTTTGTCCAAACGCCACAAAAAACTGATCAATAGCG
Found at i:105938511 original size:28 final size:28
Alignment explanation
Indices: 105938451--105938526 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 28
105938441 TGGCTTTCTG
* *
105938451 TAAACCCTTAAATCTTAAACATTAAACCC
1 TAAACCC-TAAATCTTAAACATTAAAACA
*
105938480 TAAACCCTAAATTTTAAATCA-TAAAACA
1 TAAACCCTAAATCTTAAA-CATTAAAACA
*
105938508 TAAACACT-AATCTATAAAC
1 TAAACCCTAAATCT-TAAAC
105938527 TCCAAAACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 5 0.12
28 26 0.65
29 9 0.22
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (28 bp):
TAAACCCTAAATCTTAAACATTAAAACA
Found at i:105941437 original size:14 final size:15
Alignment explanation
Indices: 105941418--105941447 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
105941408 TGTGTTTATA
105941418 TAAATACAT-AATTC
1 TAAATACATAAATTC
105941432 TAAATACATAAATTC
1 TAAATACATAAATTC
105941447 T
1 T
105941448 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:105945684 original size:370 final size:372
Alignment explanation
Indices: 105944868--105945778 Score: 1790
Period size: 370 Copynumber: 2.5 Consensus size: 372
105944858 CTTGTCCATT
*
105944868 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
105944933 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
105944998 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
105945063 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
105945128 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
105945193 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
105945240 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
105945305 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
*
105945370 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAACGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
105945434 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
105945499 CGATTCTTTTTTGATATTATTATATTC-AATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
105945563 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
105945610 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
105945675 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
105945740 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
105945779 TGTTTCAATT
Statistics
Matches: 537, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
370 253 0.47
371 108 0.20
372 176 0.33
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (372 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:105945892 original size:24 final size:24
Alignment explanation
Indices: 105945865--105945932 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
105945855 ATTATTATTG
*
105945865 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
105945889 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
105945913 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
105945933 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:105946153 original size:15 final size:15
Alignment explanation
Indices: 105946109--105946164 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
105946099 AACGACATGT
105946109 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
105946125 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
105946138 ATATTATTTAATTAA
1 ATATTATTTAATTAA
105946153 ATATTATTTAAT
1 ATATTATTTAAT
105946165 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:105946281 original size:9 final size:9
Alignment explanation
Indices: 105946269--105946494 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
105946259 TATTTGATAT
*
105946269 CATAATTTA
1 CATAACTTA
105946278 CATAACTTA
1 CATAACTTA
* *
105946287 TATAACATA
1 CATAACTTA
*
105946296 TATAACTTA
1 CATAACTTA
105946305 CATAACTTA
1 CATAACTTA
* *
105946314 TATAACATA
1 CATAACTTA
105946323 CATAACTTA
1 CATAACTTA
*
105946332 TATAACTTA
1 CATAACTTA
*
105946341 TATAACTTA
1 CATAACTTA
* *
105946350 GATAA-ATA
1 CATAACTTA
*
105946358 TATAACTTA
1 CATAACTTA
105946367 CATAACTTA
1 CATAACTTA
105946376 CATAATACTTA
1 CAT-A-ACTTA
* *
105946387 AATATATTTTATA
1 CATA-A--CT-TA
*
105946400 TCATAATTTA
1 -CATAACTTA
105946410 CATAACTTA
1 CATAACTTA
105946419 CATAACTTA
1 CATAACTTA
*
105946428 TATAACTTA
1 CATAACTTA
* *
105946437 GATAA-ATA
1 CATAACTTA
* *
105946445 TATAATTTA
1 CATAACTTA
*
105946454 CATAA-ATA
1 CATAACTTA
* * *
105946462 TATATCATA
1 CATAACTTA
*
105946471 TCATAAATTA
1 -CATAACTTA
105946481 CATAACTTA
1 CATAACTTA
105946490 CATAA
1 CATAA
105946495 TACTTAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 130 0.75
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:105946291 original size:18 final size:18
Alignment explanation
Indices: 105946269--105946494 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
105946259 TATTTGATAT
* *
105946269 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
105946287 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
105946305 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
105946323 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
105946341 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
105946358 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
105946376 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
105946400 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
105946419 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
105946437 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
105946454 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
105946471 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
105946490 CATAA
1 CATAA
105946495 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 92 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:105946482 original size:114 final size:114
Alignment explanation
Indices: 105946297--105946518 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
105946287 TATAACATAT
* * *
105946297 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
105946362 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
105946411 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
105946474 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
105946519 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:105952169 original size:21 final size:21
Alignment explanation
Indices: 105952136--105952186 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
105952126 ACAACTTAGA
*
105952136 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
105952157 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
105952178 GCAGAGGCA
1 GCAGAGGCA
105952187 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:105952654 original size:42 final size:43
Alignment explanation
Indices: 105952579--105952781 Score: 315
Period size: 42 Copynumber: 4.8 Consensus size: 43
105952569 GTAAAAAAAG
* * *
105952579 CGCCGCTAAAAGCCTTGACGTTTAGCGGTGCTTTACCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
105952622 CGCCGCTAAAAG-CTTGACCTTTAGCGACGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
105952664 CGCCG-TAAAAGCCTTGACCTTTAGCGGTGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
105952706 CGCCGCTAAAAGCCTTGACC-TTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
105952748 CGCCGCTAAAAGCCTTGA-CTTTAGTGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
105952782 TTCAATAAAC
Statistics
Matches: 148, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
41 7 0.05
42 115 0.78
43 26 0.18
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:105954019 original size:24 final size:24
Alignment explanation
Indices: 105953987--105954040 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
105953977 TTTCACGAGT
*
105953987 TTCCCGATATTGGCTCACATGAGC
1 TTCCTGATATTGGCTCACATGAGC
*
105954011 TTCCTGATATTGGCTCGCATGAGC
1 TTCCTGATATTGGCTCACATGAGC
105954035 TTCCTG
1 TTCCTG
105954041 TTACATAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.33
Consensus pattern (24 bp):
TTCCTGATATTGGCTCACATGAGC
Found at i:105954060 original size:25 final size:24
Alignment explanation
Indices: 105953999--105954062 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
105953989 CCCGATATTG
* *
105953999 GCTCACATGAGCTTCCTGATATTG
1 GCTCACATGAGCTTCCTGATAATA
* *
105954023 GCTCGCATGAGCTTCCTGTTACATA
1 GCTCACATGAGCTTCCTGATA-ATA
*
105954048 GCTCACATAAGCTTC
1 GCTCACATGAGCTTC
105954063 TCGTCATATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 19 0.58
25 14 0.42
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (24 bp):
GCTCACATGAGCTTCCTGATAATA
Found at i:105954076 original size:25 final size:24
Alignment explanation
Indices: 105953997--105954077 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 24
105953987 TTCCCGATAT
*
105953997 TGGCTCACATGAGCTTCC-TGATA
1 TGGCTCACATGAGCTTCCGTCATA
* * *
105954020 TTGGCTCGCATGAGCTTCCTGTTACA
1 -TGGCTCACATGAGCTTCC-GTCATA
* *
105954046 TAGCTCACATAAGCTTCTCGTCATA
1 TGGCTCACATGAGCTTC-CGTCATA
105954071 TGGCTCA
1 TGGCTCA
105954078 AAAGAGATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
24 17 0.38
25 24 0.53
26 4 0.09
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (24 bp):
TGGCTCACATGAGCTTCCGTCATA
Found at i:105956279 original size:40 final size:38
Alignment explanation
Indices: 105956227--105956321 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 38
105956217 TACGATACTT
* *
105956227 ATATGGTATGTAGGGTTGA-ATGGGTCGATTTTATCCCT
1 ATATGGTGTGTAGGGTTGAGATGGGTCGA-TTTATCCCC
* *
105956265 ATATTTGGTGTGTAGGGAT-AGGTGGGTCGATTTATCCCC
1 ATA--TGGTGTGTAGGGTTGAGATGGGTCGATTTATCCCC
*
105956304 ATATGGTGTGTTGGGTTG
1 ATATGGTGTGTAGGGTTG
105956322 GACGAAGTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
37 12 0.26
38 3 0.06
39 12 0.26
40 20 0.43
ACGTcount: A:0.18, C:0.09, G:0.34, T:0.39
Consensus pattern (38 bp):
ATATGGTGTGTAGGGTTGAGATGGGTCGATTTATCCCC
Found at i:105962679 original size:17 final size:18
Alignment explanation
Indices: 105962657--105962690 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
105962647 GGGTCAGGTC
105962657 GTGTGGGCC-ACACGGGT
1 GTGTGGGCCTACACGGGT
105962674 GTGTGGGCCTACACGGG
1 GTGTGGGCCTACACGGG
105962691 CAGGCCACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.12, C:0.24, G:0.47, T:0.18
Consensus pattern (18 bp):
GTGTGGGCCTACACGGGT
Found at i:105965353 original size:17 final size:19
Alignment explanation
Indices: 105965331--105965367 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
105965321 CTCAGTTTAG
105965331 TTTTAG-TTGATTA-TATA
1 TTTTAGATTGATTATTATA
*
105965348 TTTTAGATTTATTATTATA
1 TTTTAGATTGATTATTATA
105965367 T
1 T
105965368 CTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (19 bp):
TTTTAGATTGATTATTATA
Found at i:105965358 original size:23 final size:21
Alignment explanation
Indices: 105965326--105965367 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
105965316 CTCGTCTCAG
*
105965326 TTTAGTTTTAGTTGATTATATAT
1 TTTAGATTTA-TT-ATTATATAT
105965349 TTTAGATTTATTATTATAT
1 TTTAGATTTATTATTATAT
105965368 CTTAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTAGATTTATTATTATATAT
Found at i:105965723 original size:32 final size:32
Alignment explanation
Indices: 105965677--105965739 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
105965667 TCATTTTGGT
105965677 GACTAATGTAATCTTCCGAATTTGGGTCTAAC
1 GACTAATGTAATCTTCCGAATTTGGGTCTAAC
*
105965709 GACTAATGTTATCTTCCGAATTTGGGTCTAA
1 GACTAATGTAATCTTCCGAATTTGGGTCTAA
105965740 TGTCTAGGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (32 bp):
GACTAATGTAATCTTCCGAATTTGGGTCTAAC
Found at i:105973683 original size:7 final size:7
Alignment explanation
Indices: 105973671--105973702 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
105973661 GTAGAAAATG
105973671 TTTTCTT
1 TTTTCTT
105973678 TTTTCTT
1 TTTTCTT
105973685 TTTTCTT
1 TTTTCTT
105973692 TTTTCTT
1 TTTTCTT
105973699 TTTT
1 TTTT
105973703 TTGTATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTCTT
Found at i:105981664 original size:2 final size:2
Alignment explanation
Indices: 105981659--105981699 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
105981649 AAAAACACAC
105981659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105981700 ACATCAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:105982794 original size:17 final size:17
Alignment explanation
Indices: 105982774--105982807 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
105982764 TTTTTTAAAA
* *
105982774 AAATTATTTTTAAATTT
1 AAATTATGTTAAAATTT
105982791 AAATTATGTTAAAATTT
1 AAATTATGTTAAAATTT
105982808 GATCATATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
AAATTATGTTAAAATTT
Found at i:105983263 original size:14 final size:15
Alignment explanation
Indices: 105983244--105983272 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
105983234 CCAAAGGAGA
105983244 ATTACAAAAA-ATGG
1 ATTACAAAAATATGG
105983258 ATTACAAAAATATGG
1 ATTACAAAAATATGG
105983273 GATTTGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.07, G:0.14, T:0.24
Consensus pattern (15 bp):
ATTACAAAAATATGG
Found at i:105998570 original size:44 final size:45
Alignment explanation
Indices: 105998487--105998609 Score: 140
Period size: 44 Copynumber: 2.7 Consensus size: 45
105998477 ACGAAATGAA
* * *
105998487 CCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAG
1 CCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAG
* *
105998533 CCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAAT
1 CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAG
* * * *
105998577 TCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 CCATGTAAGTCCATATTAAA-ATATGGCATTGG
105998610 CAGGATATTG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.55
45 1 0.02
46 28 0.43
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (45 bp):
CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAG
Found at i:106000749 original size:12 final size:12
Alignment explanation
Indices: 106000732--106000756 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
106000722 AATCTATATA
106000732 AATAAATTTAAT
1 AATAAATTTAAT
106000744 AATAAATTTAAT
1 AATAAATTTAAT
106000756 A
1 A
106000757 TATTTCACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAAATTTAAT
Found at i:106003753 original size:21 final size:21
Alignment explanation
Indices: 106003726--106003774 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
106003716 TTAATTTTTT
106003726 AATTTTA-A-TATTATTAAATA
1 AATTTTACATTATT-TTAAATA
106003746 ATATTTTACATTATTTTAAATA
1 A-ATTTTACATTATTTTAAATA
106003768 AATTTTA
1 AATTTTA
106003775 GATAAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 1 0.04
21 12 0.46
22 9 0.35
23 4 0.15
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
AATTTTACATTATTTTAAATA
Found at i:106012917 original size:40 final size:40
Alignment explanation
Indices: 106012872--106013039 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
106012862 CGGAATACAA
*
106012872 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
106012912 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
106012952 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * * *
106012992 CCAGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
106013032 CCGGATAT
1 CCGGATAT
106013040 CATTCAATTG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 106 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:106013012 original size:80 final size:80
Alignment explanation
Indices: 106012872--106013039 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
106012862 CGGAATACAA
* * * *
106012872 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCAGATATAACGACTAGCACAAATG
*
106012937 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
106012952 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCAGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCAGATATAACG--ACTAGCACAAA
*
106013015 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
106013032 CCGGATAT
1 CCGGATAT
106013040 CATTCAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 74 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCAGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:106014805 original size:21 final size:18
Alignment explanation
Indices: 106014780--106014824 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
106014770 CTTTACGAAA
106014780 GGTATCGATAATTTTCAAGGT
1 GGTATCG-T-ATTTTC-AGGT
*
106014801 GGTATCGTTTTTTCAGGT
1 GGTATCGTATTTTCAGGT
106014819 GGTATC
1 GGTATC
106014825 AATACCACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 10 0.43
19 5 0.22
20 1 0.04
21 7 0.30
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.42
Consensus pattern (18 bp):
GGTATCGTATTTTCAGGT
Found at i:106016069 original size:26 final size:26
Alignment explanation
Indices: 106016033--106016085 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
106016023 TATCTATCAA
106016033 GTCCAATTGAAAAAATGCTTTGTCTT
1 GTCCAATTGAAAAAATGCTTTGTCTT
*
106016059 GTCCAATTGAAAAATTGCTTTGTCTT
1 GTCCAATTGAAAAAATGCTTTGTCTT
106016085 G
1 G
106016086 AGCATCGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (26 bp):
GTCCAATTGAAAAAATGCTTTGTCTT
Found at i:106020116 original size:18 final size:17
Alignment explanation
Indices: 106020093--106020126 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
106020083 TAGGAGTTCT
106020093 AATAATTATACATTTAAA
1 AATAATTATA-ATTTAAA
106020111 AATAATTATAATTTAA
1 AATAATTATAATTTAA
106020127 TTTACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAATTATAATTTAAA
Found at i:106020578 original size:26 final size:26
Alignment explanation
Indices: 106020536--106020585 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
106020526 TTAATTATTA
*
106020536 TAATTAAAAATATAATATTTAAAAAT
1 TAATTAAAAATATAATATGTAAAAAT
*
106020562 TAATTAAATAT-TAAATATGTAAAA
1 TAATTAAAAATAT-AATATGTAAAA
106020586 TCACATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
TAATTAAAAATATAATATGTAAAAAT
Found at i:106023099 original size:16 final size:18
Alignment explanation
Indices: 106023059--106023099 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
106023049 ATGAAAACTA
106023059 GTAAAATATAAATGATTAT
1 GTAAAATAT-AATGATTAT
106023078 -TAAAATAT-AT-ATTAT
1 GTAAAATATAATGATTAT
106023093 GTAAAAT
1 GTAAAAT
106023100 TTGAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
18 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (18 bp):
GTAAAATATAATGATTAT
Found at i:106023362 original size:20 final size:20
Alignment explanation
Indices: 106023330--106023384 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
106023320 AAAGTAAAAA
106023330 ATAAAATAAAATAAACTGATT
1 ATAAAA-AAAATAAACTGATT
*
106023351 ATAAAAAAAATAGACTGATT
1 ATAAAAAAAATAAACTGATT
*
106023371 ATAAAATAAATAAA
1 ATAAAAAAAATAAA
106023385 TAAAGAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.25
Consensus pattern (20 bp):
ATAAAAAAAATAAACTGATT
Found at i:106025463 original size:44 final size:44
Alignment explanation
Indices: 106025306--106025995 Score: 364
Period size: 44 Copynumber: 15.2 Consensus size: 44
106025296 AAGATCTATA
* *
106025306 ATTTATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* **
106025350 ATTTGATATCTTCAGGCTGCTCCACTGCAACTTCAGGGAGATAAG
1 ATTTG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* ** * * * * *
106025395 ACTTGTAATTTCGACCTGCCCCACTGCAATTTCAGGGGGATAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * *
106025439 GTTTGTGGCTTCAATCTACTCCACTACAACTTCAGGGAGATAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * ** * * * *
106025483 ATCCACCATGGTAGATTTGATCTGAC-CTACTGAAACTTCAGAGG-TATAGG
1 AT------TTGTAGCTTCAATCTG-CTCCACTGCAACTTCAG-GGAGATAAG
* * * * *
106025533 ATTTGTAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * *
106025577 ATTTGCTATCTTTAGTCTGTTCCACTGCAACTTCAGGGAGATAAG
1 ATTTG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
** * * * *
106025622 GCTCGTAACTTCAA-CTTACTCCACTGTAACTTCAGGGAGATAAGGTTTGTG
1 ATTTGTAGCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAA-------G
* * * *
106025673 ATTTGTAGCTTCAATCTGTTCCACTGCATCTACAGGGAAATAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* **
106025717 ATTTGCTATCTTCAGGCTGCTCCACTGCAACTTCAGGGAGATAAG
1 ATTTG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
106025762 ACTCGTAACTTCAACCTACTTCACTGCAACTTCAGGGAGATAAGGTTTGTG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-------G
* * * * * *
106025813 ATTTATAGCTTTAATTTGTTCCACTGCATCTTCAGGGAAATAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* ** * * ** *
106025857 ATTTGCTATCTTCAGCCTACTCCACTACTGCTT-AGGGAGATAGG
1 ATTTG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
106025901 A-TGGTGGCTTAAATCTGCCCCACTGCAACTTCAGAGAGACAAG
1 ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* ** * * * *
106025944 ATTCGCCGTCTGCGATCTGTTCCACTGCAACTTCAGGGAGACAAG
1 ATTTGTAG-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
*
106025989 ATCTGTA
1 ATTTGTA
106025996 AATTCACTGA
Statistics
Matches: 476, Mismatches: 137, Indels: 65
0.70 0.20 0.10
Matches are distributed among these distances:
42 17 0.04
43 13 0.03
44 190 0.40
45 160 0.34
50 28 0.06
51 67 0.14
52 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
ATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
Found at i:106025716 original size:140 final size:140
Alignment explanation
Indices: 106025532--106025882 Score: 540
Period size: 140 Copynumber: 2.5 Consensus size: 140
106025522 AGAGGTATAG
* * * * * * * *
106025532 GATTTGTAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAGATTTGCTATCTTTAGTCTGT
1 GATTTGTAGCTTTAATCTGTTCCACTGCATCTTCAGGGAAATAAGATTTGCTATCTTCAGGCTGC
* * *
106025597 TCCACTGCAACTTCAGGGAGATAAGGCTCGTAACTTCAACTTACTCCACTGTAACTTCAGGGAGA
66 TCCACTGCAACTTCAGGGAGATAAGACTCGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGA
106025662 TAAGGTTTGT
131 TAAGGTTTGT
* *
106025672 GATTTGTAGCTTCAATCTGTTCCACTGCATCTACAGGGAAATAAGATTTGCTATCTTCAGGCTGC
1 GATTTGTAGCTTTAATCTGTTCCACTGCATCTTCAGGGAAATAAGATTTGCTATCTTCAGGCTGC
*
106025737 TCCACTGCAACTTCAGGGAGATAAGACTCGTAACTTCAACCTACTTCACTGCAACTTCAGGGAGA
66 TCCACTGCAACTTCAGGGAGATAAGACTCGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGA
106025802 TAAGGTTTGT
131 TAAGGTTTGT
* * * *
106025812 GATTTATAGCTTTAATTTGTTCCACTGCATCTTCAGGGAAATAAGATTTGCTATCTTCAGCCTAC
1 GATTTGTAGCTTTAATCTGTTCCACTGCATCTTCAGGGAAATAAGATTTGCTATCTTCAGGCTGC
106025877 TCCACT
66 TCCACT
106025883 ACTGCTTAGG
Statistics
Matches: 191, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
140 191 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (140 bp):
GATTTGTAGCTTTAATCTGTTCCACTGCATCTTCAGGGAAATAAGATTTGCTATCTTCAGGCTGC
TCCACTGCAACTTCAGGGAGATAAGACTCGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGA
TAAGGTTTGT
Found at i:106026161 original size:64 final size:64
Alignment explanation
Indices: 106026060--106026187 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
106026050 TCATGTATCT
106026060 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
106026124 ATGCTTATGTCAAATAATTCGGATGCTATGATCGAAATGAATCAACTGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
106026188 TTATGATATA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:106030580 original size:19 final size:19
Alignment explanation
Indices: 106030556--106030597 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
106030546 GGGAAAATCT
106030556 AATGCAAATG-ATGCAATG
1 AATGCAAATGTATGCAATG
*
106030574 CAATGCAAATGTATGGAATG
1 -AATGCAAATGTATGCAATG
106030594 AATG
1 AATG
106030598 TAAAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.43, C:0.10, G:0.24, T:0.24
Consensus pattern (19 bp):
AATGCAAATGTATGCAATG
Found at i:106033298 original size:3 final size:3
Alignment explanation
Indices: 106033292--106033324 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
106033282 GGTTTTTTTA
106033292 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
106033325 TATATAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:106035068 original size:265 final size:266
Alignment explanation
Indices: 106034604--106035084 Score: 621
Period size: 265 Copynumber: 1.8 Consensus size: 266
106034594 GGCTTGGTGA
* * * *
106034604 CTTAAATCTGCTCCATTGGCAATACATGGAGATAAGATTCGTCATCCTCAATCTGCTCCGCAACT
1 CTTAAATCTGCTCCATAGCCAATACATGGAGATAAGATTCGTCATCCTCAATCTACTCCACAACT
* * * * * *
106034669 GCTCTAGGGAAATAAGATCTTTAATCTTCAGTCTGCTTCCTTGCCTCTTTAGGAATATAAGACCC
66 GCTCTAGGGAAATAAGATCTTCAATCTTCAATCTCCTTCCTTGCATCTTCAGGAAGATAAGACCC
* *** * *
106034734 AATCTTTAGTTTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATGGTCTAAATCTGCTCCATTG
131 AATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGAGGGTCTAAATCTGCTCCACTG
106034799 CCGATACATGGAGATAAGATTCTCCATCTGCAATTTGCTCTGCTGCAACTTTAGGGAAATAAATC
196 CCGATACATGGAGATAAGATTCTCCATCTGCAATTTGCTCTGCTGCAACTTTAGGGAAATAAATC
106034864 TTGGGG
261 TTGGGG
* * * * **
106034870 CTTAAATCTGCTCCATAGCCGATACATGGAGATAAGATTCG-CCTCTTTCGATCTACTCCACTTC
1 CTTAAATCTGCTCCATAGCCAATACATGGAGATAAGATTCGTCATC-CTCAATCTACTCCACAAC
* * * *
106034934 TG-TTTAGGGAGATAAGATCTTCAATCTTTAATCTCCTTCTTTGCTATC-TCAGGAAGATAAGAC
65 TGCTCTAGGGAAATAAGATCTTCAATCTTCAATCTCCTTCCTTGC-ATCTTCAGGAAGATAAGAC
* * * *
106034997 TCGATCTTCAACCTGCTCTCTTGCTACCTCAGATAGATAAGGCTTG-GGG-CTTAAATCTGCTCC
129 CCAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGC-TGAGGGTC-TAAATCTGCTCC
106035060 ACTGCCGATACATGGAGATAAGATT
192 ACTGCCGATACATGGAGATAAGATT
106035085 TGCCTCTGCT
Statistics
Matches: 181, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
264 1 0.01
265 124 0.69
266 56 0.31
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (266 bp):
CTTAAATCTGCTCCATAGCCAATACATGGAGATAAGATTCGTCATCCTCAATCTACTCCACAACT
GCTCTAGGGAAATAAGATCTTCAATCTTCAATCTCCTTCCTTGCATCTTCAGGAAGATAAGACCC
AATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGAGGGTCTAAATCTGCTCCACTG
CCGATACATGGAGATAAGATTCTCCATCTGCAATTTGCTCTGCTGCAACTTTAGGGAAATAAATC
TTGGGG
Found at i:106035294 original size:146 final size:146
Alignment explanation
Indices: 106034974--106035381 Score: 604
Period size: 146 Copynumber: 2.8 Consensus size: 146
106034964 ATCTCCTTCT
* * *
106034974 TTGCTATCTCAGGAAGATAAGACTCGATCTTCAACCTGCTCTCTTGCTACCTCAGATAGATAAGG
1 TTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGG
* * * *
106035039 CTTGGGGCTTAAATCTGCTCCACTGCCGATACATGGAGATAAGATTTGCCTCTGCTGATTTTCAG
66 CTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCACTGCTGATCTTCAA
* *
106035104 TCTTCAGTCTGCTTCC
131 TCTCCAGTCTGCCTCC
*
106035120 TTGCTACCTCAGGAAGATAAGACTCAATCTTCAACATGCTCTCTTGCTACCTCAGAGAGATAAGG
1 TTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGG
* * *
106035185 CTTGGGGCTTAAATCTACTCCATTGCCGATACATGTAGATAAGATTTGCCACTTC-GATCTTCAA
66 CTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCACTGCTGATCTTCAA
106035249 TCTCCAGTCTGCCTCC
131 TCTCCAGTCTGCCTCC
**
106035265 TTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACCAT-AGAGAGATAA
1 TTGCTACCTCAGGAAGATAAGACT-CAATCTTCAACCTGCTCTCTTGCTACC-TCAGAGAGATAA
* * * * *
106035329 GGCTAGTGGCTAAAATCTGCTCCATTGCCGGTACATGGAGATAAGATTCGCCA
64 GGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCA
106035382 TCTTAAATCT
Statistics
Matches: 237, Mismatches: 23, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
145 45 0.19
146 191 0.81
147 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (146 bp):
TTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGG
CTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCACTGCTGATCTTCAA
TCTCCAGTCTGCCTCC
Found at i:106035588 original size:44 final size:45
Alignment explanation
Indices: 106035540--106035643 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 45
106035530 GCCGATACAT
* * *
106035540 GGAGATAAGATTTGT-ATATTGAGA-CTACTCCACTGCAACTTCAG
1 GGAGATAAGGTTTGTAATATTCA-ACCTACTCCACTGCAACTTCAA
* * *
106035584 GGAGATAAGGTTTGTAATCTTCAACCTGCTCCACTGCAATTTCAA
1 GGAGATAAGGTTTGTAATATTCAACCTACTCCACTGCAACTTCAA
*
106035629 TGAGATAAGGTTTGT
1 GGAGATAAGGTTTGT
106035644 TATGATCTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 15 0.29
45 36 0.71
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (45 bp):
GGAGATAAGGTTTGTAATATTCAACCTACTCCACTGCAACTTCAA
Found at i:106035606 original size:175 final size:177
Alignment explanation
Indices: 106035240--106035592 Score: 464
Period size: 175 Copynumber: 2.0 Consensus size: 177
106035230 TTGCCACTTC
* *
106035240 GATCTTCAATCTCCAGTCTGCCTCCTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGC
1 GATCTTCAATCTTCAGTCTGCCTCCTTGCTACCTCAGAAAGATAAGACTACAATCGCCAACCTGC
*
106035305 TCTCTTGCTACCATAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGGTACATGGAGA
66 TCTCTTGCTACCATAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGA
* **
106035370 TAAGATTCGCCATCTTAAATCTACTCCACTACTGCTTAGGGAGATAA
131 TAAGATTCGCCATATTAAATCTACTCCACTACAACTTAGGGAGATAA
* * * ** * *
106035417 GATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACT-CATTCTTCAACTTGT
1 GATCTTCAATCTTCAGTCTGCCTCCTTGCTACCTCAGAAAGATAAGACTACAATCGCCAACCTGC
* * *
106035481 TCT-TGTGCTACCTTAGAGAGATAAGGTTGGTGG-TAAAATCTGCTCCATTGCCGATACATGGAG
66 TCTCT-TGCTACCATAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
* * * *
106035544 ATAAGATTTG-TATATTGAGA-CTACTCCACTGCAACTTCAGGGAGATAA
130 ATAAGATTCGCCATATT-AAATCTACTCCACTACAACTT-AGGGAGATAA
106035592 G
1 G
106035593 GTTTGTAATC
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
174 18 0.12
175 52 0.34
176 38 0.25
177 45 0.29
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (177 bp):
GATCTTCAATCTTCAGTCTGCCTCCTTGCTACCTCAGAAAGATAAGACTACAATCGCCAACCTGC
TCTCTTGCTACCATAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGA
TAAGATTCGCCATATTAAATCTACTCCACTACAACTTAGGGAGATAA
Found at i:106035919 original size:64 final size:64
Alignment explanation
Indices: 106035818--106036073 Score: 458
Period size: 64 Copynumber: 4.0 Consensus size: 64
106035808 TTCATGTATC
* * *
106035818 ATGCTTATGCCAAATAGTTAGGATGTTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
106035882 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
106035946 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATTAAATGCTCCTGACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
*
106036010 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTGGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
106036074 TTATGAATGA
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 184 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:106035980 original size:22 final size:22
Alignment explanation
Indices: 106035945--106036045 Score: 58
Period size: 22 Copynumber: 4.7 Consensus size: 22
106035935 AACTAGATGT
106035945 GATGCTTATG-TCAAATAATTAG
1 GATGC-TATGATCAAATAATTAG
106035967 GATGCTATGATCAAAATGAATTA-
1 GATGCTATGATC-AAAT-AATTAG
* *
106035990 AATGCTCCTGA-C---TAGATGT-G
1 GATGCT-ATGATCAAATA-AT-TAG
106036010 -ATGCTTATG-TCAAATAATTAG
1 GATGC-TATGATCAAATAATTAG
106036031 GATGCTATGATCAAA
1 GATGCTATGATCAAA
106036046 ATGAATCAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 30
0.65 0.03 0.32
Matches are distributed among these distances:
18 1 0.02
19 10 0.16
20 3 0.05
21 11 0.18
22 18 0.30
23 10 0.16
24 8 0.13
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (22 bp):
GATGCTATGATCAAATAATTAG
Found at i:106041130 original size:2 final size:2
Alignment explanation
Indices: 106041123--106041153 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
106041113 GTATCTATGC
106041123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106041154 AGGTATCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106041896 original size:39 final size:39
Alignment explanation
Indices: 106041817--106041909 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 39
106041807 TGCATGGTAT
* *
106041817 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAATGC
* *
106041856 TGGAGATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAA-TGC
106041895 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
106041910 GCTAAGTCCC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.04
39 45 0.96
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAATGC
Found at i:106041934 original size:39 final size:39
Alignment explanation
Indices: 106041902--106042117 Score: 315
Period size: 39 Copynumber: 5.5 Consensus size: 39
106041892 TGCTGGAAAA
106041902 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
***
106041941 ATATCCGGGCTAAGTCTTAAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * **
106041980 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
106042019 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
106042058 ATATCGGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
106042097 ATATTCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
106042118 CATGCTTTGT
Statistics
Matches: 156, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 147 0.94
40 1 0.01
41 8 0.05
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:106042023 original size:117 final size:118
Alignment explanation
Indices: 106041862--106042134 Score: 354
Period size: 117 Copynumber: 2.3 Consensus size: 118
106041852 ATGCTGGAGA
* * ** ****
106041862 TATATCCGGACTTAAAGT-CCGCAGGCTAAGTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGC
1 TATATCCGGGCTTAAAGTCCCGAAGGCTTTGTGCTGGTGCTATATCCGGGCTAAGTCCCGAAGGC
* **
106041926 ATTCGTGCTGGTATTATATCCGGGCTAAGTCTTAAAGGCATTCGTGCTGGTAT
66 ATTCGTGCTGGCATTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTAT
106041979 TATATCCGGGC-TAAA-TCCCGAAGGCATTTGTGCTGGTGCTATATCCGGGCTAAGTCCCGAAGG
1 TATATCCGGGCTTAAAGTCCCGAAGGC-TTTGTGCTGGTGCTATATCCGGGCTAAGTCCCGAAGG
* * *
106042042 CATTCGTGCTGGCGTTATATCGGGGCTAAGTCCCGAAGGCATTCGTGCTGGTAT
65 CATTCGTGCTGGCATTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTAT
* * * *
106042096 TATATTCGGGCTTAAAGTCCCGCATGCTTTGTGGTGGTG
1 TATATCCGGGCTTAAAGTCCCGAAGGCTTTGTGCTGGTG
106042135 ATTTGATTTT
Statistics
Matches: 134, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
115 1 0.01
116 11 0.08
117 99 0.74
118 15 0.11
119 8 0.06
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (118 bp):
TATATCCGGGCTTAAAGTCCCGAAGGCTTTGTGCTGGTGCTATATCCGGGCTAAGTCCCGAAGGC
ATTCGTGCTGGCATTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTAT
Found at i:106047871 original size:3 final size:3
Alignment explanation
Indices: 106047863--106047911 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
106047853 GAATTAAAAT
* * **
106047863 TAA TAA TAA CAAA TAA TAA TAA TAA TAA TAA TAG CGA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
106047909 TAA
1 TAA
106047912 GAGGATTAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 35 0.95
4 2 0.05
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:106050625 original size:50 final size:51
Alignment explanation
Indices: 106050548--106050676 Score: 224
Period size: 50 Copynumber: 2.5 Consensus size: 51
106050538 GACCATGGCA
106050548 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
106050599 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
106050649 ACAAGTGAAAAGTGGTAGCTTCTGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
106050677 CTGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
50 50 0.68
51 24 0.32
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:106050690 original size:31 final size:31
Alignment explanation
Indices: 106050652--106050769 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
106050642 ACAAATGACA
* *
106050652 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
106050683 AGTGAAAAGTGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
106050714 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
106050745 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
106050770 AAGTGACAAG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:106050942 original size:49 final size:49
Alignment explanation
Indices: 106050791--106051058 Score: 276
Period size: 49 Copynumber: 5.7 Consensus size: 49
106050781 GATTTTCGTA
* * * * * *
106050791 TAAGACCATATCTGGGATATGGCATCG--GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTG
* * * *
106050838 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
*
106050884 TAAGACCATAGCTGGGTTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
* * * *
106050933 TAAGACCATAGCTGGGCTATGACATCTATGTGTGATATGTAATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
*
106050982 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T--GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
106051024 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
106051059 AGATGTGTAA
Statistics
Matches: 197, Mismatches: 18, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 35 0.18
44 1 0.01
45 1 0.01
46 27 0.14
47 38 0.19
48 15 0.08
49 79 0.40
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.31
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
Found at i:106051012 original size:42 final size:42
Alignment explanation
Indices: 106050966--106051093 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
106050956 ATCTATGTGT
*
106050966 GATATGT-AATTACGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAA-TATGTGTAAGACCATAGCTGGGCTATGGCATC
*
106051008 GATATATGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* * **
106051050 -ATTATGTGAAGATGTGTAAGACCATAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
106051092 GA
1 GA
106051094 GAAAATGAAG
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
41 1 0.01
42 72 0.95
43 3 0.04
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:106053766 original size:4 final size:4
Alignment explanation
Indices: 106053757--106053781 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
106053747 GGTGACTGGA
106053757 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
106053782 TTCGAGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:106056546 original size:64 final size:64
Alignment explanation
Indices: 106056473--106056682 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
106056463 TTGGGCCAGA
*
106056473 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
106056537 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
*
106056599 ACTGGACC--AG
54 A-TGGCCCATAG
* *
106056609 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACATTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
106056673 GCCCATTTCA
1 GCCCATTTCA
106056683 AAATACATGC
Statistics
Matches: 102, Mismatches: 26, Indels: 36
0.62 0.16 0.22
Matches are distributed among these distances:
62 5 0.05
63 4 0.04
64 27 0.26
65 2 0.02
66 10 0.10
67 4 0.04
68 6 0.06
69 4 0.04
70 10 0.10
71 2 0.02
72 18 0.18
73 5 0.05
74 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:106056684 original size:136 final size:137
Alignment explanation
Indices: 106056439--106056724 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
106056429 TATTGGGCCT
** * *
106056439 AAGCCCATTCAGGTAACAGTGGTATTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
106056504 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
106056569 CATATGC
131 CATATGC
106056576 AAGCCCATTTGGGTAACAGTGGTACTGGACCAG-GCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
106056640 AGCCCCTTATTCAGATAACATTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
106056705 CATATGC
131 CATATGC
106056712 AAGCCCATTTGGG
1 AAGCCCATTTGGG
106056725 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 115 0.80
137 29 0.20
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:106058542 original size:26 final size:26
Alignment explanation
Indices: 106058511--106058670 Score: 284
Period size: 26 Copynumber: 6.2 Consensus size: 26
106058501 TGACATTCCC
106058511 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
106058537 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
106058563 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
106058589 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
106058615 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
106058641 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
106058667 ATCA
1 ATCA
106058671 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:106059283 original size:31 final size:31
Alignment explanation
Indices: 106059245--106059359 Score: 194
Period size: 31 Copynumber: 3.7 Consensus size: 31
106059235 AATGACAAGA
* *
106059245 GAAAAGTGGTAGCTTCTGCTACCTGATCAGT
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
106059276 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
106059307 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
1 GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
* *
106059338 GAATAGTGGTAGCTTCGGCTAC
1 GAAAAGTGGTAGCTCCGGCTAC
106059360 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (31 bp):
GAAAAGTGGTAGCTCCGGCTACCTGATCAGT
Found at i:106059534 original size:49 final size:49
Alignment explanation
Indices: 106059381--106059613 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
106059371 GATTTCCGTA
* * * * * *
106059381 TAAGGCCATATCTGGGATATGGCATCG--GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTAC-GTG
* *
106059428 TAAGACCATATCTGGGATATGGCATC-A-ATGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG
* *
106059474 TAAGACTATAGCTGGGTTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG
*
106059523 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG
* * *
106059572 TAAGACTATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTG-ATATGTG
106059614 TAAGACCATA
Statistics
Matches: 166, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
46 25 0.15
47 36 0.22
48 15 0.09
49 83 0.50
50 7 0.04
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (49 bp):
TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG
Found at i:106059615 original size:42 final size:43
Alignment explanation
Indices: 106059471--106059683 Score: 173
Period size: 49 Copynumber: 4.7 Consensus size: 43
106059461 TATGTGATTC
* * *
106059471 GTGTAAGACTATAGCTGGGTTATGGCATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
106059518 ACGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATG-TGATT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
* *
106059567 ACGTGTAAGACTATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
106059611 GTGTAAGACCATAGCTGGGCTATGGCA-CCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
106059653 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
106059684 GAAAATGAAG
Statistics
Matches: 148, Mismatches: 13, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
41 2 0.01
42 59 0.40
43 2 0.01
44 6 0.04
45 2 0.01
47 1 0.01
49 76 0.51
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:106064947 original size:14 final size:14
Alignment explanation
Indices: 106064928--106064954 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106064918 TTTTCTTGCA
106064928 CACTTGTATTTTAC
1 CACTTGTATTTTAC
106064942 CACTTGTATTTTA
1 CACTTGTATTTTA
106064955 TTTTATCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (14 bp):
CACTTGTATTTTAC
Found at i:106066859 original size:21 final size:23
Alignment explanation
Indices: 106066807--106066859 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
106066797 TGGAGTGTTA
106066807 ATAAGTT-ATTATTAAAGTTTCG
1 ATAAGTTAATTATTAAAGTTTCG
* *
106066829 TTAAG-AAATT-TTAAAGTTTCG
1 ATAAGTTAATTATTAAAGTTTCG
106066850 AT-AGTTAATT
1 ATAAGTTAATT
106066860 GAATAAAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
20 2 0.08
21 16 0.64
22 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.45
Consensus pattern (23 bp):
ATAAGTTAATTATTAAAGTTTCG
Found at i:106068556 original size:14 final size:14
Alignment explanation
Indices: 106068537--106068570 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
106068527 GATCAGTGAT
106068537 AAGTGACAAGCGAC
1 AAGTGACAAGCGAC
*
106068551 AAGTGACAAGCGAT
1 AAGTGACAAGCGAC
106068565 AAGTGA
1 AAGTGA
106068571 TAAGTGGTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.29, T:0.12
Consensus pattern (14 bp):
AAGTGACAAGCGAC
Found at i:106068628 original size:51 final size:51
Alignment explanation
Indices: 106068552--106068668 Score: 207
Period size: 51 Copynumber: 2.3 Consensus size: 51
106068542 ACAAGCGACA
* *
106068552 AGTGACAAGCGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATT
1 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
*
106068603 AGTGACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
106068654 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
106068669 ATGTGATCAG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
Found at i:106073267 original size:20 final size:20
Alignment explanation
Indices: 106073238--106073282 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
106073228 ATCACATGTA
* *
106073238 TTCATAAAATTTTAGAAGTT
1 TTCATAAAATTTTACAACTT
*
106073258 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
106073278 TTCAT
1 TTCAT
106073283 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:106076855 original size:24 final size:24
Alignment explanation
Indices: 106076827--106076875 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
106076817 TCACTAACAA
106076827 GGAATGTCACATTTGGAAACTAAG
1 GGAATGTCACATTTGGAAACTAAG
106076851 GGAATGTCACATTTGGAAACTAAG
1 GGAATGTCACATTTGGAAACTAAG
106076875 G
1 G
106076876 CTACTCCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (24 bp):
GGAATGTCACATTTGGAAACTAAG
Found at i:106077213 original size:21 final size:21
Alignment explanation
Indices: 106077189--106077228 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
106077179 TAACTGCATG
106077189 TCTAATGTTGCAACACTGGTT
1 TCTAATGTTGCAACACTGGTT
106077210 TCTAATGTTGCAACACTGG
1 TCTAATGTTGCAACACTGG
106077229 AGACAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (21 bp):
TCTAATGTTGCAACACTGGTT
Found at i:106090652 original size:15 final size:15
Alignment explanation
Indices: 106090617--106090662 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
106090607 TCAATAGCAT
106090617 TTTTTAATATT-TAAA
1 TTTTTAATATTAT-AA
*
106090632 TATTTAATATTATAA
1 TTTTTAATATTATAA
106090647 TTTTTAAT-TTA-AA
1 TTTTTAATATTATAA
106090660 TTT
1 TTT
106090663 AATGTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 5 0.18
14 3 0.11
15 19 0.68
16 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTTAATATTATAA
Found at i:106090658 original size:20 final size:19
Alignment explanation
Indices: 106090633--106090680 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
106090623 ATATTTAAAT
106090633 ATTTAATATTATAAT-TTTTA
1 ATTTAA-ATT-TAATGTTTTA
106090653 ATTTAAATTTAATGTTTTTA
1 ATTTAAATTTAATG-TTTTA
*
106090673 TTTTAAAT
1 ATTTAAAT
106090681 AAATCTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 18 0.72
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTAAATTTAATGTTTTA
Found at i:106101315 original size:31 final size:31
Alignment explanation
Indices: 106101258--106101335 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
106101248 CTCATTGGCG
* * * *
106101258 GAATAGTTTAATGACTTAGATAAAAACTTTT
1 GAATAATTTAGTGACTTAAATAAAAACTTTC
* *
106101289 GCATAATTTAGTGACTTAAATGAAAACTTTC
1 GAATAATTTAGTGACTTAAATAAAAACTTTC
106101320 GAATAATTTAGTGACT
1 GAATAATTTAGTGACT
106101336 AATTTGTAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (31 bp):
GAATAATTTAGTGACTTAAATAAAAACTTTC
Found at i:106106061 original size:15 final size:15
Alignment explanation
Indices: 106106043--106106073 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
106106033 TTTGCTTGAA
106106043 ACTCGTTTGCACACC
1 ACTCGTTTGCACACC
106106058 ACTCGTTTGCACACC
1 ACTCGTTTGCACACC
106106073 A
1 A
106106074 AGTATAGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.39, G:0.13, T:0.26
Consensus pattern (15 bp):
ACTCGTTTGCACACC
Found at i:106108166 original size:15 final size:15
Alignment explanation
Indices: 106108146--106108175 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106108136 CATTTTATTT
*
106108146 ATATTAGGATAATTA
1 ATATTAAGATAATTA
106108161 ATATTAAGATAATTA
1 ATATTAAGATAATTA
106108176 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:106108970 original size:17 final size:18
Alignment explanation
Indices: 106108948--106108986 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
106108938 CCATCTCAAT
*
106108948 TTTCGTCATTT-ATTTAA
1 TTTCGTAATTTAATTTAA
106108965 TTTCGTAATTTCAATTTAA
1 TTTCGTAATTT-AATTTAA
106108984 TTT
1 TTT
106108987 AAATACTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
19 9 0.47
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.59
Consensus pattern (18 bp):
TTTCGTAATTTAATTTAA
Found at i:106114607 original size:8 final size:7
Alignment explanation
Indices: 106114590--106114656 Score: 50
Period size: 7 Copynumber: 9.4 Consensus size: 7
106114580 GGCAACCCAA
106114590 TTTTTAT
1 TTTTTAT
106114597 TTTTCTA-
1 TTTT-TAT
106114604 TTTTTA-
1 TTTTTAT
106114610 TTTTTAT
1 TTTTTAT
106114617 TTTATT-T
1 TTT-TTAT
*
106114624 ATTTTAT
1 TTTTTAT
*
106114631 CTTATTAT
1 -TTTTTAT
106114639 TTTATTAT
1 TTT-TTAT
*
106114647 TTATTAT
1 TTTTTAT
106114654 TTT
1 TTT
106114657 CAGATACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
6 10 0.21
7 23 0.48
8 15 0.31
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTAT
Found at i:106114608 original size:14 final size:13
Alignment explanation
Indices: 106114589--106114656 Score: 59
Period size: 14 Copynumber: 4.8 Consensus size: 13
106114579 AGGCAACCCA
106114589 ATTTTTATTTTTCT
1 ATTTTTATTTTT-T
106114603 ATTTTTA-TTTTT
1 ATTTTTATTTTTT
106114615 A-TTTTATTTATTTT
1 ATTTTTA-TT-TTTT
106114629 ATCTTATTATTTTATT
1 AT-TT-TTATTTT-TT
106114645 ATTTATTATTTT
1 ATTT-TTATTTT
106114657 CAGATACTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
11 5 0.11
12 2 0.04
13 5 0.11
14 12 0.26
15 12 0.26
16 8 0.17
17 3 0.06
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:106114641 original size:22 final size:19
Alignment explanation
Indices: 106114589--106114648 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 19
106114579 AGGCAACCCA
106114589 ATTTTTATTTT-TCTATTTTT
1 ATTTTTATTTTAT-TA-TTTT
106114609 ATTTTTATTTTATTTATTTT
1 ATTTTTATTTTA-TTATTTT
106114629 ATCTTATTATTTTATTATTT
1 AT-TT-TTATTTTATTATTT
106114649 ATTATTTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
20 17 0.47
21 10 0.28
22 9 0.25
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (19 bp):
ATTTTTATTTTATTATTTT
Found at i:106114652 original size:15 final size:15
Alignment explanation
Indices: 106114605--106114656 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
106114595 ATTTTTCTAT
106114605 TTTTATT-TTTATTTTA
1 TTTTATTATTTA--TTA
*
106114621 TTTATTTTATCTTATTA
1 TTT-TATTAT-TTATTA
106114638 TTTTATTATTTATTA
1 TTTTATTATTTATTA
106114653 TTTT
1 TTTT
106114657 CAGATACTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 10 0.32
16 8 0.26
17 9 0.29
18 1 0.03
19 3 0.10
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:106116094 original size:15 final size:15
Alignment explanation
Indices: 106116074--106116103 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106116064 CATTTTATAT
*
106116074 ATATTAGGATAATTA
1 ATATTAAGATAATTA
106116089 ATATTAAGATAATTA
1 ATATTAAGATAATTA
106116104 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:106117176 original size:17 final size:19
Alignment explanation
Indices: 106117136--106117178 Score: 63
Period size: 17 Copynumber: 2.3 Consensus size: 19
106117126 GACTGCATCA
106117136 AAAAATTATAAAATTTTAAT
1 AAAAA-TATAAAATTTTAAT
106117156 AAAAATATAAAA-TTT-AT
1 AAAAATATAAAATTTTAAT
106117173 AAAAAT
1 AAAAAT
106117179 TAACCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 3 0.13
19 7 0.30
20 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATATAAAATTTTAAT
Found at i:106118262 original size:21 final size:22
Alignment explanation
Indices: 106118222--106118283 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 22
106118212 ATATTTACGA
106118222 TTTTTAATATAAAATTTAAATAC
1 TTTTTAA-ATAAAATTTAAATAC
* **
106118245 TTTTTAAA-AAATTTTAAATTT
1 TTTTTAAATAAAATTTAAATAC
106118266 TTTTTAAATTTAAAATTT
1 TTTTTAAA--TAAAATTT
106118284 TTATTGATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 18 0.56
22 1 0.03
23 7 0.22
24 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTTAAATAAAATTTAAATAC
Found at i:106118266 original size:18 final size:18
Alignment explanation
Indices: 106118232--106118286 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
106118222 TTTTTAATAT
106118232 AAAATTTAAATACTTTTTAA
1 AAAATTTAAA-A-TTTTTAA
* **
106118252 AAAATTTTAAATTTTTTT
1 AAAATTTAAAATTTTTAA
*
106118270 TAAATTTAAAATTTTTA
1 AAAATTTAAAATTTTTA
106118287 TTGATTTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
18 19 0.66
19 1 0.03
20 9 0.31
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
AAAATTTAAAATTTTTAA
Found at i:106124466 original size:2 final size:2
Alignment explanation
Indices: 106124459--106124491 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
106124449 ACCATATACT
106124459 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106124492 TAAAATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106128447 original size:30 final size:31
Alignment explanation
Indices: 106128394--106128451 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
106128384 AACAATCTAA
106128394 TGACTTAAATAAAAACATTTGAATAGTTCAG
1 TGACTTAAATAAAAACATTTGAATAGTTCAG
*
106128425 TGACTT-AATGAAAAA-TTTTGAATAGTT
1 TGACTTAAAT-AAAAACATTTGAATAGTT
106128452 AGGCAACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (31 bp):
TGACTTAAATAAAAACATTTGAATAGTTCAG
Found at i:106128832 original size:22 final size:21
Alignment explanation
Indices: 106128811--106128864 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
106128801 AAAAAAATTA
* *
106128811 ATTTCTTTTTTCTTTTACATT
1 ATTTCCTTTTTATTTTACATT
**
106128832 ATTTCCTTTTTATTTTTTATT
1 ATTTCCTTTTTATTTTACATT
106128853 -TTTCCTTTTTAT
1 ATTTCCTTTTTAT
106128865 GTTTTATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (21 bp):
ATTTCCTTTTTATTTTACATT
Found at i:106128856 original size:20 final size:20
Alignment explanation
Indices: 106128833--106128873 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
106128823 TTTTACATTA
*
106128833 TTTCCTTTTTATTTTTTATT
1 TTTCCTTTTTATGTTTTATT
106128853 TTTCCTTTTTATGTTTTATT
1 TTTCCTTTTTATGTTTTATT
106128873 T
1 T
106128874 CTTCTTCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTCCTTTTTATGTTTTATT
Found at i:106145563 original size:20 final size:18
Alignment explanation
Indices: 106145535--106145575 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
106145525 TATCCAAAGT
*
106145535 ATATGTAATAAATATAAAAA
1 ATATATAAT-AATA-AAAAA
106145555 ATATATAATAATAAAAAA
1 ATATATAATAATAAAAAA
106145573 ATA
1 ATA
106145576 ATTTTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 4 0.20
20 8 0.40
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
ATATATAATAATAAAAAA
Found at i:106147834 original size:2 final size:2
Alignment explanation
Indices: 106147822--106147862 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
106147812 TTTAAATTAT
106147822 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106147863 AATGAATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:106148307 original size:34 final size:34
Alignment explanation
Indices: 106148269--106148340 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
106148259 TTTAAATGTT
106148269 TTAATATAAGGGCATGTGTATTTTTGAGACTAAC
1 TTAATATAAGGGCATGTGTATTTTTGAGACTAAC
106148303 TTAATATAAGGGCATGTGTATTTTTGAGACTAAC
1 TTAATATAAGGGCATGTGTATTTTTGAGACTAAC
106148337 TTAA
1 TTAA
106148341 AATTTATGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (34 bp):
TTAATATAAGGGCATGTGTATTTTTGAGACTAAC
Found at i:106149557 original size:264 final size:264
Alignment explanation
Indices: 106149106--106149723 Score: 677
Period size: 264 Copynumber: 2.3 Consensus size: 264
106149096 ACGAGATTTG
* * * * * * * *
106149106 ATATTTGGCAATTCGCGAAATAGTGCCCTAACGAGTTGGGTTGTAATTTCGCATTTGCTCAAAAT
1 ATATTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCATTTGCGCAAAAT
* * **
106149171 AATCGAATATTACTTCAAAATTTCACTCATGTCTTCTAAAAATATTTTCAAACAAAGGTGATACT
66 AATCGAATATCACTTCAAAATTTCACTCATGTCTTCTAAAAATATTTTAAAACAAAGGCAATACT
** * * *
106149236 CGGTGTTTGATAATTCGATAATCATGCCCTATCATGCTGGGTTGTGATTCCTCGTTTGCTCAAAA
131 CGGCATTTGACAATTCGAGAATCATGCCCTATCATGCTGGGTTATGATTCCTCGTTTGCTCAAAA
* * * *
106149301 CAATAGAATATTCCTTTAGGTTTTCACTCATGTTTA-AAAATATATATTTAAAAACGAAGGAAAT
196 CAATAGAACATTCCTTTAGATTCTCACTCATGTTTATAAAA-AAATATTTAAAAACGAAGGAAAT
*
106149365 ATTCG
260 ATTCA
* * * *
106149370 ATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCGCAAGAT
1 ATATTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCATTTGCGCAAAAT
* *** * * * * *
106149435 AATCGAATATCCCTTTGGAATTTCATTCGTGTTTTCTAAAAACT-TTTTAAAACGAAGGCAATAT
66 AATCGAATATCACTTCAAAATTTCACTCATGTCTTCTAAAAA-TATTTTAAAACAAAGGCAATAC
* *
106149499 TCGGCATTTGACAATTCGAGAATCATGCTCTATCATGCTGGGTTATGATTTCTCGTTTGCTCAAA
130 TCGGCATTTGACAATTCGAGAATCATGCCCTATCATGCTGGGTTATGATTCCTCGTTTGCTCAAA
* * * * **
106149564 ACGATCGAACATTCCTTTATATTCTCACTCATGTTTATAAAAAAATATTTAAAAATGAAGGCGAT
195 ACAATAGAACATTCCTTTAGATTCTCACTCATGTTTATAAAAAAATATTTAAAAACGAAGGAAAT
*
106149629 GTTCA
260 ATTCA
* * * * ** **
106149634 ATATTTGGCGATT-TGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTC-CAAAA
1 ATATTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCATTTG-CGCAAAA
* * * *
106149697 CAATCGAATATCTCCTCAGAATTTCAC
65 TAATCGAATATCACTTCAAAATTTCAC
106149724 ACGTATTTTA
Statistics
Matches: 291, Mismatches: 60, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
263 61 0.21
264 225 0.77
265 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (264 bp):
ATATTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCATTTGCGCAAAAT
AATCGAATATCACTTCAAAATTTCACTCATGTCTTCTAAAAATATTTTAAAACAAAGGCAATACT
CGGCATTTGACAATTCGAGAATCATGCCCTATCATGCTGGGTTATGATTCCTCGTTTGCTCAAAA
CAATAGAACATTCCTTTAGATTCTCACTCATGTTTATAAAAAAATATTTAAAAACGAAGGAAATA
TTCA
Found at i:106149571 original size:131 final size:132
Alignment explanation
Indices: 106149142--106149712 Score: 419
Period size: 132 Copynumber: 4.3 Consensus size: 132
106149132 CCTAACGAGT
* * * * * * **
106149142 TGGGTTGTAATTTCGCATTTGCTCAAAATAATCGAATATTACTTCAAAATTTCACTCATGTCTTC
1 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGATTTCACTCATGT-TT-
* * * ** * *** * *
106149207 TAAAA-ATAT-TTT-CAAACAAAGGTGATACTCGGTGTTTGATAATTCGATAATCATGCCCTATC
64 AAAAATATATATTTAAAAACGAAGGAAATATTCGACATTTGACAATTCGAGAATCATGCCCTATC
106149269 ATGC
129 ATGC
* * *
106149273 TGGGTTGTGATTCCTCGTTTGCTCAAAACAATAGAATATTCCTTTAGGTTTTCACTCATGTTTAA
1 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGATTTCACTCATGTTTAA
** * * * *
106149338 AAATATATATTTAAAAACGAAGGAAATATTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
66 AAATATATATTTAAAAACGAAGGAAATATTCGACATTTGACAATTC-GAGAATCATGCCCTATCA
106149403 TGC
130 TGC
** * * * * * *
106149406 TGGGTTGCAATTTCTCGTTTGCGCAAGATAATCGAATATCCCTTT-GGAATTTCATTCGTGTTTT
1 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGG-ATTTCACTCATG--TT
* * * *
106149470 CTAAAAA-CT-T-TTT-AAAACGAAGGCAATATTCGGCATTTGACAATTCGAGAATCATGCTCTA
63 -TAAAAATATATATTTAAAAACGAAGGAAATATTCGACATTTGACAATTCGAGAATCATGCCCTA
106149531 TCATGC
127 TCATGC
* * * *
106149537 TGGGTTATGATTTCTCGTTTGCTCAAAACGATCGAACATTCCTTTA-TATTCTCACTCATGTTTA
1 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGATT-TCACTCATGTTTA
* * ** * * * * * *
106149601 TAAAA-AAATATTTAAAAATGAAGGCGATGTTCAATATTTGGCGATTTGAGAATCGA-GCCCTAT
65 -AAAATATATATTTAAAAACGAAGGAAATATTCGACATTTGACAATTCGAGAATC-ATGCCCTAT
*
106149664 CGTGC
128 CATGC
* * * *
106149669 TGGGTTGCGCTTTTTCATTTG-TCCAAAACAATCGAATATCTCCT
1 TGGGTTGTGATTTCTCGTTTGCT-CAAAACAATCGAATAT-TCCT
106149713 CAGAATTTCA
Statistics
Matches: 346, Mismatches: 77, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
128 2 0.01
129 10 0.03
130 10 0.03
131 117 0.34
132 126 0.36
133 71 0.21
134 1 0.00
135 3 0.01
136 6 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (132 bp):
TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGATTTCACTCATGTTTAA
AAATATATATTTAAAAACGAAGGAAATATTCGACATTTGACAATTCGAGAATCATGCCCTATCAT
GC
Found at i:106152991 original size:25 final size:25
Alignment explanation
Indices: 106152961--106153009 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
106152951 ATAAAAATTT
106152961 GATTTAATCCT-TTAAAAATTAAAAA
1 GATTTAA-CCTATTAAAAATTAAAAA
*
106152986 GATTTAAGCTATTAAAAATTAAAA
1 GATTTAACCTATTAAAAATTAAAA
106153010 TTTAATTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (25 bp):
GATTTAACCTATTAAAAATTAAAAA
Found at i:106157302 original size:17 final size:18
Alignment explanation
Indices: 106157268--106157303 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
106157258 TTGATATGAT
*
106157268 ATTAAAATTATTTAAAAA
1 ATTAAAATTATATAAAAA
106157286 ATTAAAA-TATATAAAAA
1 ATTAAAATTATATAAAAA
106157303 A
1 A
106157304 ACAGGGAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAAAATTATATAAAAA
Found at i:106157624 original size:19 final size:19
Alignment explanation
Indices: 106157598--106157686 Score: 130
Period size: 19 Copynumber: 4.8 Consensus size: 19
106157588 TTATATCTTT
106157598 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
106157617 TGAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
106157635 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
106157652 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
*
106157671 TAAGATTTCATATCAT
1 TAAGATTGCATATCAT
106157687 TGAAGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
17 15 0.24
18 15 0.24
19 33 0.52
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:106157695 original size:36 final size:35
Alignment explanation
Indices: 106157598--106157677 Score: 115
Period size: 35 Copynumber: 2.2 Consensus size: 35
106157588 TTATATCTTT
* *
106157598 TAAGATTGCATATCATATCTGAGATTGCAATCATATC
1 TAAGATTG--TATCATATCTAAGATTACAATCATATC
106157635 TAAGATTGTATCATATCTAAGATTACATATCATATC
1 TAAGATTGTATCATATCTAAGATTACA-ATCATATC
106157671 TAAGATT
1 TAAGATT
106157678 TCATATCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 17 0.43
36 15 0.38
37 8 0.20
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TAAGATTGTATCATATCTAAGATTACAATCATATC
Found at i:106158093 original size:45 final size:45
Alignment explanation
Indices: 106158038--106158192 Score: 197
Period size: 45 Copynumber: 3.5 Consensus size: 45
106158028 GGAAGGCGAT
*
106158038 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
106158083 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * ** *
106158128 ATCTGCT-TCTTCAATTTGCTTCTAGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
106158172 ATTTG-TCATCTTAGATCTGCT
1 ATCTGCT-ATCTTCGATCTGCT
106158193 TCGATGTAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
43 1 0.01
44 35 0.37
45 59 0.62
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:106158335 original size:78 final size:78
Alignment explanation
Indices: 106158206--106158669 Score: 610
Period size: 78 Copynumber: 5.8 Consensus size: 78
106158196 ATGTAAACAC
* * *
106158206 ATGAAGGTCAGATTTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
106158271 TGGATCTGCTTTA
66 TGGATCTGCTTCA
* *
106158284 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT-
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
106158347 TTGGATCTGCTCCA
65 TTGGATCTGCTTCA
* * *
106158361 ATGAAGGTCAGATCTACTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAA----TC
106158426 ATCTTGGATCTGCTTCGATGTAACCA
62 ATCTTGGATCTG---C--T-T---CA
106158452 CATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 -ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
106158517 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
106158531 ATAAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
106158595 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
106158609 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
106158670 TATTTCTTCT
Statistics
Matches: 341, Mismatches: 26, Indels: 38
0.84 0.06 0.09
Matches are distributed among these distances:
76 2 0.01
77 65 0.19
78 178 0.52
79 6 0.02
81 4 0.01
82 10 0.03
83 1 0.00
85 2 0.01
87 1 0.00
88 14 0.04
91 2 0.01
92 56 0.16
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:106158588 original size:247 final size:248
Alignment explanation
Indices: 106158152--106158670 Score: 887
Period size: 247 Copynumber: 2.1 Consensus size: 248
106158142 TTTGCTTCTA
*
106158152 GTCTAATACAGAGATGCCAAATTTGTCATCTTAGATCTGCTTCGATGTAAACACATGAAGGTCAG
1 GTCTAATACAGAGATGCCAAATCTGTCATCTTAGATCTGCTTCGATGTAAACACATGAAGGTCAG
* *
106158217 ATTTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATTATCTTGGATCTGCTT
66 ATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
* * *
106158282 TAATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
131 CAATAAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
*
106158347 -TTGGATCTGCTCCAATGAAGGTCAGATCTACTGTGTCTTCGATCTGCTCCCC
196 CTTGGATCTGCTCCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCC
* * *
106158399 GTCTAATACAGAGATGTCAAATCTGTCATCTTGGATCTGCTTCGATGTAACCACATGAAGGTCAG
1 GTCTAATACAGAGATGCCAAATCTGTCATCTTAGATCTGCTTCGATGTAAACACATGAAGGTCAG
*
106158464 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
66 ATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
106158529 CAATAAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCAT
131 CAATAAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
* *
106158594 CTTGGATCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCC
196 CTTGGATCTGCTCCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCC
* *
106158647 GTCGAATATAGAGATGCCAAATCT
1 GTCTAATACAGAGATGCCAAATCT
106158671 ATTTCTTCTA
Statistics
Matches: 254, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
247 184 0.72
248 70 0.28
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (248 bp):
GTCTAATACAGAGATGCCAAATCTGTCATCTTAGATCTGCTTCGATGTAAACACATGAAGGTCAG
ATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATAAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
CTTGGATCTGCTCCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCC
Found at i:106167305 original size:15 final size:15
Alignment explanation
Indices: 106167285--106167314 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106167275 CACTATCTCC
*
106167285 TTTCTCTAACTAGGT
1 TTTCTCTAACCAGGT
106167300 TTTCTCTAACCAGGT
1 TTTCTCTAACCAGGT
106167315 ACAGATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.43
Consensus pattern (15 bp):
TTTCTCTAACCAGGT
Found at i:106168949 original size:36 final size:36
Alignment explanation
Indices: 106168908--106168987 Score: 119
Period size: 36 Copynumber: 2.2 Consensus size: 36
106168898 ATTACAAAAC
*
106168908 CATATC-T-TCTAAGATTGCATATCATATTTAAGATTG
1 CATATCATATCTAAGATTG--TATCATATCTAAGATTG
106168944 CATATCATATCTAAGATTGTATCATATCTAAGATTG
1 CATATCATATCTAAGATTGTATCATATCTAAGATTG
106168980 CATATCAT
1 CATATCAT
106168988 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
36 30 0.73
37 1 0.02
38 10 0.24
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (36 bp):
CATATCATATCTAAGATTGTATCATATCTAAGATTG
Found at i:106168985 original size:14 final size:15
Alignment explanation
Indices: 106168948--106168985 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
106168938 AGATTGCATA
106168948 TCATATCTAAGATTG
1 TCATATCTAAGATTG
106168963 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
106168980 -CATATC
1 TCATATC
106168986 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:106168995 original size:17 final size:19
Alignment explanation
Indices: 106168915--106168987 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
106168905 AACCATATCT
106168915 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
106168934 TTTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
106168953 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
106168970 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
106168988 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
17 17 0.34
19 33 0.66
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:106170273 original size:21 final size:23
Alignment explanation
Indices: 106170247--106170288 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
106170237 AAATAATTAT
106170247 TATTTAAAATTT-T-TAAAAATA
1 TATTTAAAATTTATATAAAAATA
106170268 TATTTAAAATTTATATAAAAA
1 TATTTAAAATTTATATAAAAA
106170289 ATCAAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
22 1 0.05
23 6 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATTTAAAATTTATATAAAAATA
Found at i:106172781 original size:16 final size:14
Alignment explanation
Indices: 106172760--106172798 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
106172750 CAAACACACA
106172760 ATTTTTATAATTAATT
1 ATTTTTATAA-T-ATT
106172776 ATTTTTA-AATATT
1 ATTTTTATAATATT
106172789 ATTTTTATAA
1 ATTTTTATAA
106172799 AAAGAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 3 0.14
15 2 0.09
16 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTTTATAATATT
Found at i:106175964 original size:2 final size:2
Alignment explanation
Indices: 106175957--106175996 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
106175947 TAGTCTTCTT
*
106175957 TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106175997 AGCATGTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:106176978 original size:131 final size:130
Alignment explanation
Indices: 106176779--106177214 Score: 555
Period size: 131 Copynumber: 3.4 Consensus size: 130
106176769 CAATACTCGG
* * * *
106176779 TGTTTGGCAATTC-GGGAATCGTGTCCTATCGTGTTGGGTTGCGATTT-CTCGTTTGTTCAAAAA
1 TGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCT-GTTTGTCCAAAAT
*
106176842 AATCGAATATTCCTTTAGAATTTCACTCATGCTTTTAAAAATTCTTCAAAATGAAGGTAATGTTC
65 AATCGAATATTCCTTTAGAATTTCATTCATG-TTTTAAAAATTCTTCAAAATGAAGGTAATGTTC
106176907 GA
129 GA
106176909 TGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCTGTTTGTCCAAAATA
1 TGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCTGTTTGTCCAAAATA
* * *
106176974 ATCGAACATTCCTTTGGAATTTCATTCATGTCTTTAAAAATTCTTCAAAACGAAGGTAATGTTCG
66 ATCGAATATTCCTTTAGAATTTCATTCATGT-TTTAAAAATTCTTCAAAATGAAGGTAATGTTCG
106177039 A
130 A
* * *
106177040 TGTTTGGCAATTCGGGGAATCGTGCTCTATCATGCTGGGTTGCGATCTCCTGTTTGTTCC-AAAT
1 TGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCTGTTTG-TCCAAAAT
* * ** * *
106177104 AATCGAGTATTCCTTTAGAATTTCATTCATGTTCTCCAAATTC-T-AAAAT-AAGGCAATGTCCG
65 AATCGAATATTCCTTTAGAATTTCATTCATGTTTTAAAAATTCTTCAAAATGAAGGTAATGTTCG
106177166 A
130 A
* ** * * *
106177167 TGTCTAGG-AATTCGATGAGTCGTGCCCTA-CTGTACTGGGTTTCGATTT
1 TGT-TTGGCAATTCGGGGAATCGTGCCCTATC-GTGCTGGGTTGCGATTT
106177215 TCTCTTTGGA
Statistics
Matches: 271, Mismatches: 29, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
126 1 0.00
127 45 0.17
128 7 0.03
129 1 0.00
130 22 0.08
131 190 0.70
132 5 0.02
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (130 bp):
TGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCTGTTTGTCCAAAATA
ATCGAATATTCCTTTAGAATTTCATTCATGTTTTAAAAATTCTTCAAAATGAAGGTAATGTTCGA
Found at i:106179839 original size:28 final size:28
Alignment explanation
Indices: 106179799--106179877 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
106179789 GCAATCAAAT
* * *
106179799 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
106179827 ATGGCACTTAGTGTGCGATATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
106179855 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
106179878 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Done.