Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 367 of 427
Found at i:106417866 original size:21 final size:21
Alignment explanation
Indices: 106417819--106417868 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
106417809 CTTAATAATT
** *
106417819 ATAATAAAAAAATCGTAATAG
1 ATAATAAAAAAATAATAAGAG
* *
106417840 AAAATAATAAAATAATAAGAG
1 ATAATAAAAAAATAATAAGAG
106417861 ATAATAAA
1 ATAATAAA
106417869 TACAATGTTG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
ATAATAAAAAAATAATAAGAG
Found at i:106422591 original size:49 final size:47
Alignment explanation
Indices: 106422509--106422606 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 47
106422499 TTTTTTTTTC
**
106422509 TTTTATGATTTTTAGGGTTTATCGAATTTTCGATTCA-ATATACACAA
1 TTTTATGATTTTTAGGGTTTATCGAATCATCGATT-AGATATACACAA
*
106422556 TTTTATGATTTTTTTAGGGTTTGA-CTAATCATCGATTAGATATACACAA
1 TTTTATGA--TTTTTAGGGTTT-ATCGAATCATCGATTAGATATACACAA
106422605 TT
1 TT
106422607 ATAGACTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
47 8 0.18
48 1 0.02
49 34 0.77
50 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (47 bp):
TTTTATGATTTTTAGGGTTTATCGAATCATCGATTAGATATACACAA
Found at i:106427178 original size:3 final size:3
Alignment explanation
Indices: 106427170--106427216 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
106427160 GGGATACGTT
106427170 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
106427217 TCACGCTAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:106427635 original size:36 final size:36
Alignment explanation
Indices: 106427588--106427659 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
106427578 TTAATCCATC
*
106427588 CTTAATTTTGTAAGAAAGCAATAAAATCAATAGTCT
1 CTTAATTTTGTAAGAAAGCAACAAAATCAATAGTCT
106427624 CTTAATTTTGTAAGAAAGCAACAAAATCAATAGTCT
1 CTTAATTTTGTAAGAAAGCAACAAAATCAATAGTCT
106427660 TACTCTTATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.32
Consensus pattern (36 bp):
CTTAATTTTGTAAGAAAGCAACAAAATCAATAGTCT
Found at i:106433066 original size:197 final size:197
Alignment explanation
Indices: 106432720--106433287 Score: 698
Period size: 197 Copynumber: 2.9 Consensus size: 197
106432710 TTTATGTGTT
*
106432720 TGGGATTTTGTTGCACTCTTTGCCCTTTGTGAAATTGAATCCCATTCTATATCAGTGGAAACAAA
1 TGGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATCCCATTCTATATCAGTGGAAACAAA
106432785 TTGGTATCCCCAACCTAGTCCTTTATTAGCTTGTTCAAGAACCTTACAGCATTCTTGATCTTATA
66 TTGGTATCCCCAACCTAGTCCTTTATTAGCTTGTTCAAGAACCTTACAGCATTCTTGATCTTATA
*
106432850 TAATGGACTCCCTGGAATTTTAAAGGTTGAAACTACTCTGAATTTGTGGTTAGATTAGTATGCTT
131 TAAAGGACTCCCTGGAATTTTAAAGGTTGAAACTACTCTGAATTTGTGGTTAGATTAGTATGCTT
106432915 TA
196 TA
* ** * *
106432917 TGGGATTTTGTTGCACTCATTGCCCTTTTTGAAATTGAATTGCATTCTATATCCGTGGAAACTAA
1 TGGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATCCCATTCTATATCAGTGGAAACAAA
* *
106432982 TTGGTATCTCCAACCTAGTTCTTTATTAG-TTCGTTCAAGAACCTT-CAAGCATTCTTGATCTTA
66 TTGGTATCCCCAACCTAGTCCTTTATTAGCTT-GTTCAAGAACCTTAC-AGCATTCTTGATCTTA
* ** *
106433045 TATAAAGGACTGTCC-GGAATTTTTGAGGTTGAAACTACTTTGAATTTGTGGTTAGATTAGTATG
129 TATAAAGGACT-CCCTGGAATTTTAAAGGTTGAAACTACTCTGAATTTGTGGTTAGATTAGTATG
*
106433109 CTTTG
193 CTTTA
* ** * * *
106433114 TGGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGTATTTCTTTCTGTAGCA-TGGAAACTAA
1 TGGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATCCCATTCTATATCAGTGGAAAC-AA
* * * ** * * *
106433178 ATT-GTAGCTCCAATCTATAGTAATTTATTAGCTTGTTCAAGAGA-CTTAAAGCATTGTTGATCA
65 ATTGGTATCCCCAA-C-CTAGTCCTTTATTAGCTTGTTCAAGA-ACCTTACAGCATTCTTGATCT
* * * * * ** * *
106433241 TATGTAAAGCATTCACAGGAATTTTTGAGGTTGAAATTACTGTGAAT
127 TATATAAAGGACTCCCTGGAATTTTAAAGGTTGAAACTACTCTGAAT
106433288 CTAACGTTTC
Statistics
Matches: 325, Mismatches: 36, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
196 19 0.06
197 228 0.70
198 75 0.23
199 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (197 bp):
TGGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATCCCATTCTATATCAGTGGAAACAAA
TTGGTATCCCCAACCTAGTCCTTTATTAGCTTGTTCAAGAACCTTACAGCATTCTTGATCTTATA
TAAAGGACTCCCTGGAATTTTAAAGGTTGAAACTACTCTGAATTTGTGGTTAGATTAGTATGCTT
TA
Found at i:106442720 original size:21 final size:21
Alignment explanation
Indices: 106442696--106442746 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
106442686 GCGGTGGCGA
* *
106442696 TGAGATTAGTTACTGTAGCGG
1 TGAGATTAGATACTATAGCGG
*
106442717 TGAGA-TCGATACTATAGCGG
1 TGAGATTAGATACTATAGCGG
106442737 TGAGATTAGA
1 TGAGATTAGA
106442747 AACAGCGGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (21 bp):
TGAGATTAGATACTATAGCGG
Found at i:106446308 original size:32 final size:32
Alignment explanation
Indices: 106446268--106446420 Score: 216
Period size: 32 Copynumber: 4.8 Consensus size: 32
106446258 AAAAAATATG
* *
106446268 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
** *
106446300 ATACATTAGTTTTGTATATAAAAAAGTAGATA
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
106446332 ATACATTAGGTTCACATATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
106446364 ATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
106446396 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGTTTTACATATAAAAAA
106446421 CTAGCATAGT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 103 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (32 bp):
ATACATTAGTTTTACATATAAAAAAGTAGATC
Found at i:106446353 original size:64 final size:64
Alignment explanation
Indices: 106446268--106446420 Score: 243
Period size: 64 Copynumber: 2.4 Consensus size: 64
106446258 AAAAAATATG
* * *
106446268 ATACATTAGGTTTACGTATAAAAAAGTAGATCATACATTAGTTTTGTATATAAAAAAGTAGATA
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
* * *
106446332 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
*
106446396 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGGTTTACATATAAAAAA
106446421 CTAGCATAGT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (64 bp):
ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
Found at i:106449728 original size:79 final size:79
Alignment explanation
Indices: 106449577--106449799 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 79
106449567 TCGAATGATG
* * * * *
106449577 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC-GGACTAAGATCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGC-GAGTTACTATAACCAGG-CTAAG-TCCGAAGGCAT
*
106449640 TCGTGCGAGTTACTAAT
63 TCGTGCGAGTTACTAAA
* *
106449657 TCCGGACTAAGAT-CCTAAGGCATTCGTGCGAGTTACTA-ATTCCAGGCTAAGTCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGTTACTATA-ACCAGGCTAAGTCCGAAGGCATT
*
106449720 GGTGCGAGTTACTAAA
64 CGTGCGAGTTACTAAA
** * * *
106449736 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCAGGCTAAGT-CCGAAGGCATT
106449800 TGAACGAGTA
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 68 0.56
80 44 0.36
81 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCAGGCTAAGTCCGAAGGCATTCG
TGCGAGTTACTAAA
Found at i:106449808 original size:40 final size:40
Alignment explanation
Indices: 106449577--106449801 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
106449567 TCGAATGATG
* * *
106449577 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
106449617 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
106449657 TCCGGACTAAGAT-CCTAAGGCATTCGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
106449697 TCCAGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
106449736 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
106449777 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
106449802 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:106449808 original size:119 final size:120
Alignment explanation
Indices: 106449581--106449808 Score: 259
Period size: 119 Copynumber: 1.9 Consensus size: 120
106449571 ATGATGTCCG
* *
106449581 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGC
1 GGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGC
* * **
106449646 GAGTTACTAATTCCGGACTAAGATCCTAAGGCATTCGTGCGAGTTACTAATTCCA
66 GAGTTACTAATACCGGACTAAGATCCGAAGGCATTCGAACGAGTTACTAATTCCA
* * ** *
106449701 GGCTAAGT-CCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTCGT
* * *
106449763 GCGAGTTACT-ATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
64 GCGAGTTACTAAT-ACCGGACTAAGAT-CCGAAGGCATTCGAACGAGT
106449809 AGCTATATCC
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
118 4 0.04
119 72 0.80
120 14 0.16
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
GGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGC
GAGTTACTAATACCGGACTAAGATCCGAAGGCATTCGAACGAGTTACTAATTCCA
Found at i:106449823 original size:79 final size:79
Alignment explanation
Indices: 106449577--106449824 Score: 204
Period size: 79 Copynumber: 3.1 Consensus size: 79
106449567 TCGAATGATG
* * * *
106449577 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCC-GGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAATA-CCAGG-CTAAG-TCCGAAGGCA
* ** *
106449639 TTCGTGCGAGTTACTAAT
62 TTGGAACGAGTTACTAAA
** * *
106449657 TCCGGACTAAGAT-CCTAAGGCATTCGTGCGAGTTACTAATTCCAGGCTAAGTCCGAAGGCATTG
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAATACCAGGCTAAGTCCGAAGGCATTG
**
106449721 GTGCGAGTTACTAAA
65 GAACGAGTTACTAAA
* * *
106449736 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAT-ACCAGGCTAAGT-CCGAAGGCATT
* *
106449800 TGAACGAG-TAGCTATA
64 GGAACGAGTTA-CTAAA
106449816 TCC-GGTTAA
1 TCCGGGTTAA
106449825 ATTCCAAAGG
Statistics
Matches: 141, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
78 3 0.02
79 74 0.52
80 53 0.38
81 11 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAATACCAGGCTAAGTCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:106452069 original size:18 final size:19
Alignment explanation
Indices: 106452034--106452069 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
106452024 ATGATATTAA
106452034 TGATATACCTACAAGGTAG
1 TGATATACCTACAAGGTAG
106452053 TGATATACCTA-AAGGTA
1 TGATATACCTACAAGGTA
106452070 TGAAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (19 bp):
TGATATACCTACAAGGTAG
Found at i:106452418 original size:72 final size:72
Alignment explanation
Indices: 106452295--106452489 Score: 318
Period size: 72 Copynumber: 2.7 Consensus size: 72
106452285 TCTATCACAG
* * *
106452295 AACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTTCCAAACT
1 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCACTAAAGAGTTTTCCAAACT
106452360 CAAATCA
66 CAAATCA
* *
106452367 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCAGTAAAGAGTTTTCCGAACT
1 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCACTAAAGAGTTTTCCAAACT
*
106452432 CAGATCA
66 CAAATCA
*
106452439 AACTCAGATCAAAAGACATTATTGAACTGAAACCTATCAAAAAAGCACTAA
1 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTAT-AAAAAAGCACTAA
106452490 TATATACACA
Statistics
Matches: 114, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
72 102 0.89
73 12 0.11
ACGTcount: A:0.49, C:0.18, G:0.11, T:0.22
Consensus pattern (72 bp):
AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCACTAAAGAGTTTTCCAAACT
CAAATCA
Found at i:106455025 original size:2 final size:2
Alignment explanation
Indices: 106455018--106455045 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
106455008 CTCCAATGCC
106455018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106455046 GGGCTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106456962 original size:21 final size:21
Alignment explanation
Indices: 106456938--106456979 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
106456928 AAAAATTAAA
* *
106456938 TTTTATTTCTATATTTTTATT
1 TTTTATTTCAATATTTATATT
106456959 TTTTATTTCAATATTTATATT
1 TTTTATTTCAATATTTATATT
106456980 CAACTGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTATTTCAATATTTATATT
Found at i:106457804 original size:19 final size:21
Alignment explanation
Indices: 106457768--106457806 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
106457758 CCACATGATA
106457768 AAAAAATTAGATACTAATTTG
1 AAAAAATTAGATACTAATTTG
106457789 AAAAAATTA-ATA-TAATTT
1 AAAAAATTAGATACTAATTT
106457807 AAGTATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAAAATTAGATACTAATTTG
Found at i:106460278 original size:2 final size:2
Alignment explanation
Indices: 106460271--106460307 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
106460261 CTTTACTTTT
106460271 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106460308 GAGAAATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:106464114 original size:107 final size:108
Alignment explanation
Indices: 106463927--106464139 Score: 392
Period size: 107 Copynumber: 2.0 Consensus size: 108
106463917 AAAACACGTC
*
106463927 AAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTAA
1 AAAAATTTTATCAGAGTAATTAACAAAAAATTTAATACAATTTTGTTAGAAATTTTATTATTTAA
106463992 AACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAGT
66 AACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAGT
*
106464035 AAAAATTTTAT-AGAGTAATTAACAAAAAATTTAATACAATTTTGTTTGAAATTTTATTATTTAA
1 AAAAATTTTATCAGAGTAATTAACAAAAAATTTAATACAATTTTGTTAGAAATTTTATTATTTAA
*
106464099 AACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
66 AACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
106464140 TTTTTTGTTT
Statistics
Matches: 102, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 91 0.89
108 11 0.11
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.43
Consensus pattern (108 bp):
AAAAATTTTATCAGAGTAATTAACAAAAAATTTAATACAATTTTGTTAGAAATTTTATTATTTAA
AACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAGT
Found at i:106466073 original size:20 final size:19
Alignment explanation
Indices: 106466033--106466072 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
106466023 TATTAAAGAT
106466033 AACAAAATTAAATAAATAA
1 AACAAAATTAAATAAATAA
*
106466052 AACAATAATT-AATTAATAA
1 AACAA-AATTAAATAAATAA
106466071 AA
1 AA
106466073 ATAAAATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (19 bp):
AACAAAATTAAATAAATAA
Found at i:106472202 original size:6 final size:6
Alignment explanation
Indices: 106472162--106472212 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
106472152 CGATGCTCTC
* * * *
106472162 CTCCCT CTCCCT CTCCCT CTCCTT CTCCTT CTCCTT CTCCTT CTTCTT
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
106472210 CTC
1 CTC
106472213 TTCGTTGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (6 bp):
CTCCTT
Found at i:106480655 original size:29 final size:28
Alignment explanation
Indices: 106480606--106480661 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
106480596 TTTCAATAAA
106480606 AATATATAAAATAATATTTTTAATTTTTT
1 AATATATAAAATAATATTTTT-ATTTTTT
106480635 AATATATGAAATATAA-A-TTTTATTTTT
1 AATATAT-AAA-ATAATATTTTTATTTTT
106480662 AAGCAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 6 0.24
29 11 0.44
30 4 0.16
31 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
AATATATAAAATAATATTTTTATTTTTT
Found at i:106480755 original size:22 final size:23
Alignment explanation
Indices: 106480729--106480777 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
106480719 AATATTAAAA
106480729 AAATAATATTATA-AATTCAAAT
1 AAATAATATTATATAATTCAAAT
* *
106480751 AAATAATATTATATATTTGAAAT
1 AAATAATATTATATAATTCAAAT
106480774 AAAT
1 AAAT
106480778 TTCAATAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
AAATAATATTATATAATTCAAAT
Found at i:106482396 original size:2 final size:2
Alignment explanation
Indices: 106482389--106482413 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
106482379 AACAGCAGTG
106482389 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
106482414 TATTTCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:106493581 original size:136 final size:136
Alignment explanation
Indices: 106493337--106493609 Score: 546
Period size: 136 Copynumber: 2.0 Consensus size: 136
106493327 ACAACAGAAG
106493337 TTGTAGTGCTACGGACATTGGTCACAATTCTCTCCCAAGACCTTGATAAAGAGGCTGAAGTCCTC
1 TTGTAGTGCTACGGACATTGGTCACAATTCTCTCCCAAGACCTTGATAAAGAGGCTGAAGTCCTC
106493402 AAATTCTTGAAACAAGCACACAAGAGAGCTTCTGAACTTGGAGCTGAGAGCTTTTTTGGGAAAGG
66 AAATTCTTGAAACAAGCACACAAGAGAGCTTCTGAACTTGGAGCTGAGAGCTTTTTTGGGAAAGG
106493467 TGAGGT
131 TGAGGT
106493473 TTGTAGTGCTACGGACATTGGTCACAATTCTCTCCCAAGACCTTGATAAAGAGGCTGAAGTCCTC
1 TTGTAGTGCTACGGACATTGGTCACAATTCTCTCCCAAGACCTTGATAAAGAGGCTGAAGTCCTC
106493538 AAATTCTTGAAACAAGCACACAAGAGAGCTTCTGAACTTGGAGCTGAGAGCTTTTTTGGGAAAGG
66 AAATTCTTGAAACAAGCACACAAGAGAGCTTCTGAACTTGGAGCTGAGAGCTTTTTTGGGAAAGG
106493603 TGAGGT
131 TGAGGT
106493609 T
1 T
106493610 GGAAGACGAG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 137 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (136 bp):
TTGTAGTGCTACGGACATTGGTCACAATTCTCTCCCAAGACCTTGATAAAGAGGCTGAAGTCCTC
AAATTCTTGAAACAAGCACACAAGAGAGCTTCTGAACTTGGAGCTGAGAGCTTTTTTGGGAAAGG
TGAGGT
Found at i:106495714 original size:11 final size:11
Alignment explanation
Indices: 106495698--106495722 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
106495688 CTACTTTCTT
106495698 ACAGTAAATAC
1 ACAGTAAATAC
106495709 ACAGTAAATAC
1 ACAGTAAATAC
106495720 ACA
1 ACA
106495723 CGTCACAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (11 bp):
ACAGTAAATAC
Found at i:106498408 original size:7 final size:7
Alignment explanation
Indices: 106498396--106498426 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
106498386 GAAAGGGAAA
106498396 TAATAAT
1 TAATAAT
106498403 TAATAAT
1 TAATAAT
106498410 TAATAAT
1 TAATAAT
106498417 TAATAAT
1 TAATAAT
106498424 TAA
1 TAA
106498427 AAGAAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAATAAT
Found at i:106500366 original size:25 final size:25
Alignment explanation
Indices: 106500338--106500387 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
106500328 TACGAATTCG
106500338 ACGATCTTCTTCATAACTAGTTTTT
1 ACGATCTTCTTCATAACTAGTTTTT
106500363 ACGATCTTCTTCATAACTAGTTTTT
1 ACGATCTTCTTCATAACTAGTTTTT
106500388 CTTCTTTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (25 bp):
ACGATCTTCTTCATAACTAGTTTTT
Found at i:106509913 original size:3 final size:3
Alignment explanation
Indices: 106509907--106509943 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
106509897 GTTAATTTTG
106509907 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
106509944 GTGGCGTGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:106511581 original size:49 final size:49
Alignment explanation
Indices: 106511463--106511565 Score: 127
Period size: 49 Copynumber: 2.1 Consensus size: 49
106511453 CATCACATTT
* * * * *
106511463 CAACTCAGG-CTCTCAGTTCACGGTGGTTATGCAGTTACAAGTTGAAGTA
1 CAACT-AGGACTCCCAGTTGACGGTGATTATGCAGTCACAAATTGAAGTA
* *
106511512 TAACTAGGACTCCCAGTTGACGGTGATTATGCAGTCAGAAATTGAAGTA
1 CAACTAGGACTCCCAGTTGACGGTGATTATGCAGTCACAAATTGAAGTA
106511561 CAACT
1 CAACT
106511566 TGGGTCCCTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
48 3 0.07
49 42 0.93
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (49 bp):
CAACTAGGACTCCCAGTTGACGGTGATTATGCAGTCACAAATTGAAGTA
Found at i:106513075 original size:10 final size:10
Alignment explanation
Indices: 106513060--106513093 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
106513050 TATTAAAATC
106513060 TTAAAAATAT
1 TTAAAAATAT
106513070 TTAAAAATATTT
1 TTAAAAATA--T
106513082 TTAAAAATAT
1 TTAAAAATAT
106513092 TT
1 TT
106513094 TTATACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 12 0.55
12 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TTAAAAATAT
Found at i:106513086 original size:12 final size:12
Alignment explanation
Indices: 106513060--106513096 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
106513050 TATTAAAATC
106513060 TTAAAAATA--T
1 TTAAAAATATTT
106513070 TTAAAAATATTT
1 TTAAAAATATTT
106513082 TTAAAAATATTT
1 TTAAAAATATTT
106513094 TTA
1 TTA
106513097 TACTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.36
12 16 0.64
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TTAAAAATATTT
Found at i:106513123 original size:20 final size:20
Alignment explanation
Indices: 106513064--106513126 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
106513054 AAAATCTTAA
*
106513064 AAAT-ATTTAAAAATATTTTT
1 AAATAATTTAAATA-ATTTTT
* ** *
106513084 AAAAATATTTTTATACTTTTT
1 AAATA-ATTTAAATAATTTTT
106513105 AAATAATTTAAATAATTTTT
1 AAATAATTTAAATAATTTTT
106513125 AA
1 AA
106513127 TTTTTAAAAA
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
20 17 0.53
21 9 0.28
22 6 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATAATTTAAATAATTTTT
Found at i:106513568 original size:39 final size:40
Alignment explanation
Indices: 106513525--106513618 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
106513515 CTAACAATAC
*
106513525 AGCTTTTAAAAT-TGGCATAATAACAACTTTAACCCTCAA
1 AGCTTATAAAATATGGCATAATAACAACTTTAACCCTCAA
*
106513564 AGCTTATAAATTATGGCATAATAACAACTTTAACCCTCAA
1 AGCTTATAAAATATGGCATAATAACAACTTTAACCCTCAA
*
106513604 AGCTTATAAATTATG
1 AGCTTATAAAATATG
106513619 TCAATTTAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
39 10 0.19
40 42 0.81
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (40 bp):
AGCTTATAAAATATGGCATAATAACAACTTTAACCCTCAA
Found at i:106513581 original size:40 final size:40
Alignment explanation
Indices: 106513537--106513618 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
106513527 CTTTTAAAAT
106513537 TGGCATAATAACAACTTTAACCCTCAAAGCTTATAAATTA
1 TGGCATAATAACAACTTTAACCCTCAAAGCTTATAAATTA
106513577 TGGCATAATAACAACTTTAACCCTCAAAGCTTATAAATTA
1 TGGCATAATAACAACTTTAACCCTCAAAGCTTATAAATTA
106513617 TG
1 TG
106513619 TCAATTTAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (40 bp):
TGGCATAATAACAACTTTAACCCTCAAAGCTTATAAATTA
Found at i:106519140 original size:29 final size:29
Alignment explanation
Indices: 106519097--106519158 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
106519087 ATTGGATACA
*
106519097 TTTTTTAAAAATTGTCTTATTCT-TGTAAT
1 TTTTTTAAAAATTGTCCTATT-TATGTAAT
** *
106519126 TTTTTTAAATTTTGTCCTGTTTATGTAAT
1 TTTTTTAAAAATTGTCCTATTTATGTAAT
106519155 TTTT
1 TTTT
106519159 AAAAAAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.23, C:0.06, G:0.08, T:0.63
Consensus pattern (29 bp):
TTTTTTAAAAATTGTCCTATTTATGTAAT
Found at i:106519880 original size:4 final size:4
Alignment explanation
Indices: 106519871--106519897 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
106519861 CTCAGATGTT
106519871 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
106519898 TCTTTCCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:106531559 original size:13 final size:14
Alignment explanation
Indices: 106531506--106531552 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
106531496 TAAAATTTTA
*
106531506 AAAATATAAAAATA
1 AAAATATAAAAATT
*
106531520 AAAAAATAATCAAATT
1 AAAATATAA--AAATT
106531536 AAAATATAAAAATT
1 AAAATATAAAAATT
106531550 AAA
1 AAA
106531553 TTTAAAACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 16 0.57
16 12 0.43
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:106531741 original size:35 final size:35
Alignment explanation
Indices: 106531695--106531765 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
106531685 GTGACCAGAA
106531695 AGTAGGAAATTAGAATTATACCGTTATAGGCTTAG
1 AGTAGGAAATTAGAATTATACCGTTATAGGCTTAG
106531730 AGTAGGAAATTAGAATTATACCGTTATAGGCTTAG
1 AGTAGGAAATTAGAATTATACCGTTATAGGCTTAG
106531765 A
1 A
106531766 AGAAGAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (35 bp):
AGTAGGAAATTAGAATTATACCGTTATAGGCTTAG
Found at i:106531807 original size:13 final size:13
Alignment explanation
Indices: 106531789--106531814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106531779 AGGTGCGCTG
106531789 GTTTTTTTTTTTT
1 GTTTTTTTTTTTT
106531802 GTTTTTTTTTTTT
1 GTTTTTTTTTTTT
106531815 TTTATTCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
GTTTTTTTTTTTT
Found at i:106544090 original size:2 final size:2
Alignment explanation
Indices: 106544083--106544108 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
106544073 GTAGAAATTA
106544083 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
106544109 GTTAACATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106544763 original size:20 final size:19
Alignment explanation
Indices: 106544738--106544779 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
106544728 TTTTGTTTTT
*
106544738 TTTAATGTTATGTAATATAA
1 TTTAATATTATGTAA-ATAA
*
106544758 TTTAATATTATGTTAATAA
1 TTTAATATTATGTAAATAA
106544777 TTT
1 TTT
106544780 TTTTTGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (19 bp):
TTTAATATTATGTAAATAA
Found at i:106546892 original size:18 final size:18
Alignment explanation
Indices: 106546860--106546903 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
106546850 GTAATATTTT
* *
106546860 TATTTAATTAGTAAATAGA
1 TATTT-ATTAGTAAAAAAA
*
106546879 TATTTATTATTAAAAAAA
1 TATTTATTAGTAAAAAAA
106546897 TATTTAT
1 TATTTAT
106546904 GAGATAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (18 bp):
TATTTATTAGTAAAAAAA
Found at i:106547227 original size:17 final size:17
Alignment explanation
Indices: 106547177--106547227 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
106547167 AGAGAGAAAG
**
106547177 AAGAAACAGAAAAAAAGA
1 AAGAAA-AGAAAAAGGGA
* *
106547195 AAG-AAAGGAAAGGGGA
1 AAGAAAAGAAAAAGGGA
106547211 AAGAAAAGAAAAAGGGA
1 AAGAAAAGAAAAAGGGA
106547228 GAATTGGGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 10 0.38
17 13 0.50
18 3 0.12
ACGTcount: A:0.69, C:0.02, G:0.29, T:0.00
Consensus pattern (17 bp):
AAGAAAAGAAAAAGGGA
Found at i:106548437 original size:39 final size:39
Alignment explanation
Indices: 106548366--106548440 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
106548356 ACACACCAAA
*
106548366 TTGACACCCAGTGCCTCATTGGATAGTTCGAAGTAATAT
1 TTGACACCCAGTGCCTCATTGGATAGTCCGAAGTAATAT
* *
106548405 TTGACACCCAGTGTCTCATTGGCCTAG-CCGAAGTAA
1 TTGACACCCAGTGCCTCATTGG-ATAGTCCGAAGTAA
106548441 AGTTGGTACC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 29 0.91
40 3 0.09
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (39 bp):
TTGACACCCAGTGCCTCATTGGATAGTCCGAAGTAATAT
Found at i:106548655 original size:28 final size:28
Alignment explanation
Indices: 106548621--106548697 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
106548611 TCATTTACGA
106548621 ATCAATTCAATTTCACTTTTCATCAAT-
1 ATCAATTCAATTTCACTTTTCATCAATC
* * * *
106548648 ATACAATTCAATATCAATACTT-ATCCATC
1 AT-CAATTCAATTTCACT-TTTCATCAATC
106548677 ATCAATTCAATTTC-CTTTTCA
1 ATCAATTCAATTTCACTTTTCA
106548698 ATTCCATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 29 0.74
29 4 0.10
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (28 bp):
ATCAATTCAATTTCACTTTTCATCAATC
Found at i:106550711 original size:16 final size:16
Alignment explanation
Indices: 106550673--106550714 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
106550663 TATAGTGTAT
106550673 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
106550689 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
106550704 TATTAATTATA
1 TATTAATTATA
106550715 TTAAGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:106550958 original size:25 final size:23
Alignment explanation
Indices: 106550904--106550959 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
106550894 AACAAATTAA
* * *
106550904 ATAATGACAATTGTAATAAAATT
1 ATAATTACAAATGTAAAAAAATT
*
106550927 ATTATTACAAATGTAAAATAAATAT
1 ATAATTACAAATGTAAAA-AAAT-T
106550952 ATAATTAC
1 ATAATTAC
106550960 TTATAATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 14 0.54
24 4 0.15
25 8 0.31
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (23 bp):
ATAATTACAAATGTAAAAAAATT
Found at i:106552007 original size:23 final size:22
Alignment explanation
Indices: 106551980--106552044 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
106551970 GCTTTTCCAA
106551980 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCGTATT
* *
106552003 TCAGGTACCTTGTGTGTCG--TT
1 TCAGGCA-CTTATGTGTCGTATT
* *
106552024 TCAAGCACTTATATGTCGTAT
1 TCAGGCACTTATGTGTCGTAT
106552045 ACTGATTAGG
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
20 9 0.27
21 7 0.21
22 1 0.03
23 15 0.45
24 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TCAGGCACTTATGTGTCGTATT
Found at i:106553867 original size:25 final size:25
Alignment explanation
Indices: 106553820--106553867 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
106553810 TTCCATGTAC
* ** *
106553820 TCATACTTATTTCATTTATCTATCT
1 TCATAATTATTTCATACAACTATCT
106553845 TCATAATTATTTCATACAACTAT
1 TCATAATTATTTCATACAACTAT
106553868 TTTGTACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (25 bp):
TCATAATTATTTCATACAACTATCT
Found at i:106554080 original size:46 final size:47
Alignment explanation
Indices: 106554024--106554157 Score: 166
Period size: 46 Copynumber: 2.9 Consensus size: 47
106554014 TTGACATGAT
* * * * *
106554024 GCCATAGTATCTTTCAACTATAGTCTTACTCATTTTC-TGTCATGTA
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGTA
** *
106554070 GCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATATCACGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGTA
*
106554116 GCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCA
106554158 GAGAGCACAC
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
45 4 0.05
46 72 0.95
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (47 bp):
GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGTA
Found at i:106556333 original size:11 final size:11
Alignment explanation
Indices: 106556292--106556334 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
106556282 TTATATACTA
* *
106556292 ATAAAATAATA
1 ATAAAATATTT
106556303 ATAAAATATCTT
1 ATAAAATAT-TT
106556315 ATTAAAATATTT
1 A-TAAAATATTT
106556327 ATAAAATA
1 ATAAAATA
106556335 ATATTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 15 0.54
12 5 0.18
13 8 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAAAATATTT
Found at i:106556375 original size:31 final size:30
Alignment explanation
Indices: 106556297--106556375 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
106556287 TACTAATAAA
* *
106556297 ATAATAAT-AAAATATCTTATTAAAATATTT
1 ATAA-AATAAAAATATCTAATTAAAATAATT
**
106556327 ATAAAATAATATTTATCTAATT-AAATAATT
1 ATAAAATAA-AAATATCTAATTAAAATAATT
106556357 ATAAAATATCAAAATATCT
1 ATAAAATA--AAAATATCT
106556376 CTAGCATCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
29 3 0.08
30 20 0.51
31 15 0.38
32 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATAAAAATATCTAATTAAAATAATT
Found at i:106558171 original size:22 final size:21
Alignment explanation
Indices: 106558135--106558176 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
106558125 TTATTTGCCC
*
106558135 TTATTTTTGCATTTATTTTCG
1 TTATTTTTGCATTTAGTTTCG
*
106558156 TTATTTTTAGCTTTTAGTTTC
1 TTATTTTT-GCATTTAGTTTC
106558177 CTAATTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.14, C:0.10, G:0.10, T:0.67
Consensus pattern (21 bp):
TTATTTTTGCATTTAGTTTCG
Found at i:106566579 original size:15 final size:15
Alignment explanation
Indices: 106566559--106566588 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106566549 ATCGCCATAT
106566559 TTTTTTTATTTTTTG
1 TTTTTTTATTTTTTG
*
106566574 TTTTTTTTTTTTTTG
1 TTTTTTTATTTTTTG
106566589 GGGGGGGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (15 bp):
TTTTTTTATTTTTTG
Found at i:106566579 original size:16 final size:15
Alignment explanation
Indices: 106566558--106566588 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
106566548 AATCGCCATA
106566558 TTTTTTTTATTTTTTG
1 TTTTTTTT-TTTTTTG
106566574 TTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTG
106566589 GGGGGGGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.03, C:0.00, G:0.06, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:106566919 original size:18 final size:21
Alignment explanation
Indices: 106566883--106566925 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
106566873 TTTGAGAAAA
106566883 AAATTTATTAGTTTAAAAATG
1 AAATTTATTAGTTTAAAAATG
106566904 AAATTTA-TA-TTTAAAATATG
1 AAATTTATTAGTTTAAAA-ATG
106566924 AA
1 AA
106566926 TAAAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 7 0.33
21 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (21 bp):
AAATTTATTAGTTTAAAAATG
Found at i:106577848 original size:33 final size:33
Alignment explanation
Indices: 106577806--106577871 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
106577796 ACTTTAAAGA
106577806 AAAAAATGAAAAACTTAGGTTCCTACAGTTGCT
1 AAAAAATGAAAAACTTAGGTTCCTACAGTTGCT
106577839 AAAAAATGAAAAACTTAGGTTCCTACAGTTGCT
1 AAAAAATGAAAAACTTAGGTTCCTACAGTTGCT
106577872 TAATCACATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AAAAAATGAAAAACTTAGGTTCCTACAGTTGCT
Found at i:106581328 original size:15 final size:15
Alignment explanation
Indices: 106581308--106581348 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
106581298 CTTACTCTGT
*
106581308 AAAATCGTTCGGATA
1 AAAATCGTTCAGATA
106581323 AAAATCGTTCAGATA
1 AAAATCGTTCAGATA
*
106581338 AAAATCATTCA
1 AAAATCGTTCA
106581349 TAAGCTTGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (15 bp):
AAAATCGTTCAGATA
Found at i:106582940 original size:2 final size:2
Alignment explanation
Indices: 106582933--106582970 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
106582923 TGAACAATAC
106582933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106582971 TAGAACAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106584225 original size:27 final size:28
Alignment explanation
Indices: 106584184--106584238 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
106584174 TGTAATTATA
106584184 TATATCAAAAAGTTAATTATA-TATTTT
1 TATATCAAAAAGTTAATTATAGTATTTT
* * *
106584211 TATATCATAATGTTAATTTTAGTATTTT
1 TATATCAAAAAGTTAATTATAGTATTTT
106584239 AACATTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.53
Consensus pattern (28 bp):
TATATCAAAAAGTTAATTATAGTATTTT
Found at i:106584246 original size:20 final size:20
Alignment explanation
Indices: 106584223--106584260 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
106584213 TATCATAATG
106584223 TTAAT-TTTAGTATTTTAACA
1 TTAATATTTA-TATTTTAACA
106584243 TTAATATTTATATTTTAA
1 TTAATATTTATATTTTAA
106584261 ATTTTATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
TTAATATTTATATTTTAACA
Found at i:106596792 original size:64 final size:64
Alignment explanation
Indices: 106596719--106597066 Score: 172
Period size: 64 Copynumber: 5.2 Consensus size: 64
106596709 CTGGGCCAGA
* *
106596719 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
* * *** * * *
106596783 GCCCATTTCAAAATAC-ATACAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAATA-AAC-T--G-GGCCTTA-GC---CCCTTATTTAGATAACA---GT
* *
106596845 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
106596856 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
* * * *** * * *
106596920 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTTAGATAACA---GT
* *
106596982 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
106596993 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
106597057 GCCCATTTCA
1 GCCCATTTCA
106597067 AAATACATGC
Statistics
Matches: 201, Mismatches: 49, Indels: 68
0.63 0.15 0.21
Matches are distributed among these distances:
63 19 0.09
64 44 0.22
65 9 0.04
66 1 0.00
67 22 0.11
68 10 0.05
69 10 0.05
70 22 0.11
71 1 0.00
72 9 0.04
73 35 0.17
74 19 0.09
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
Found at i:106596865 original size:73 final size:73
Alignment explanation
Indices: 106596783--106597002 Score: 196
Period size: 73 Copynumber: 3.1 Consensus size: 73
106596773 TGGCCCATAG
106596783 GCCCATTTCAAAATACATACAACATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGTACT
1 GCCCATTTCAAAATACATACAACATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGTACT
106596848 GGGCCAGA
66 GGGCCAGA
* * * *** * * *
106596856 GCCCTTTTCAGATTACAATA-AAC-T--G-GGCCTTA-GC---CCCTTATTTAGATAACA---GT
1 GCCCATTTCAAAATAC-ATACAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
* *
106596909 A-TGGCCCATA
63 ACTGGGCCAGA
*
106596919 GGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGTAC
1 -GCCCATTTCAAAATACATACAACATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGTAC
106596984 TGGGCCAGA
65 TGGGCCAGA
*
106596993 GCCCTTTTCA
1 GCCCATTTCA
106597003 GATTACAATA
Statistics
Matches: 106, Mismatches: 24, Indels: 34
0.65 0.15 0.21
Matches are distributed among these distances:
63 9 0.08
64 19 0.18
65 4 0.04
67 11 0.10
68 5 0.05
69 5 0.05
70 11 0.10
72 4 0.04
73 28 0.26
74 10 0.09
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (73 bp):
GCCCATTTCAAAATACATACAACATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGTACT
GGGCCAGA
Found at i:106596931 original size:137 final size:137
Alignment explanation
Indices: 106596685--106597108 Score: 812
Period size: 137 Copynumber: 3.1 Consensus size: 137
106596675 TATTGGGCCT
**
106596685 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
106596750 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
106596815 CATATGC
131 CATATGC
106596822 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
106596887 AGCCCCTTATTTAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
106596952 CATATGC
131 CATATGC
106596959 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
106597024 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
106597089 CATATGC
131 CATATGC
106597096 AAGCCCATTTGGG
1 AAGCCCATTTGGG
106597109 GAGACTACTC
Statistics
Matches: 282, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 282 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:106597393 original size:25 final size:27
Alignment explanation
Indices: 106597356--106597409 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
106597346 TCAAACATGC
106597356 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
106597382 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
106597408 AT
1 AT
106597410 AATAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:106597417 original size:26 final size:27
Alignment explanation
Indices: 106597388--106597448 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 27
106597378 GGGTATTTCG
* *
106597388 GTAATTTTGC-ACCTAGGGGTATAATA
1 GTAATTTTCCAACATAGGGGTATAATA
*
106597414 GTAATTTTCCATACATAGGGGTATTATA
1 GTAATTTTCCA-ACATAGGGGTATAATA
106597442 GTAATTT
1 GTAATTT
106597449 AGCTGCTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 9 0.30
28 21 0.70
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GTAATTTTCCAACATAGGGGTATAATA
Found at i:106599654 original size:35 final size:35
Alignment explanation
Indices: 106599610--106599776 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
106599600 TCCTCATTGA
** *
106599610 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
106599645 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
106599685 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
106599720 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
106599755 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
106599777 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:106599693 original size:75 final size:73
Alignment explanation
Indices: 106599605--106599776 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
106599595 GGTTTTCCTC
** * * **
106599605 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
106599669 TCAGTATGG
65 TCAGTATGG
*
106599678 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
106599743 CTCAGTATGG
64 CTCAGTATGG
106599753 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
106599777 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:106607132 original size:35 final size:35
Alignment explanation
Indices: 106607088--106607254 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
106607078 TCCTCATTGA
** *
106607088 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
106607123 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
106607163 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
106607198 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
106607233 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
106607255 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:106607171 original size:75 final size:73
Alignment explanation
Indices: 106607083--106607254 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
106607073 GGTTTTCCTC
** * * **
106607083 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
106607147 TCAGTATGG
65 TCAGTATGG
*
106607156 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
106607221 CTCAGTATGG
64 CTCAGTATGG
106607231 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
106607255 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:106609087 original size:26 final size:26
Alignment explanation
Indices: 106609051--106609186 Score: 245
Period size: 26 Copynumber: 5.2 Consensus size: 26
106609041 CATGATATTC
*
106609051 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
106609077 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
106609103 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106609129 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106609155 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106609181 TTATCA
1 TTATCA
106609187 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:106611099 original size:46 final size:44
Alignment explanation
Indices: 106610995--106611102 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
106610985 TGTCTTTGAC
** * * *
106610995 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
106611039 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
106611085 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
106611103 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:106612342 original size:24 final size:24
Alignment explanation
Indices: 106612310--106612403 Score: 136
Period size: 24 Copynumber: 3.9 Consensus size: 24
106612300 CGGGATGTTA
* *
106612310 CACTATGTGTGCAGATTTGAATGG
1 CACTATGTGTGCGGATTTGAATAG
*
106612334 CACTATGTGTGCGGATTTGTATAG
1 CACTATGTGTGCGGATTTGAATAG
*
106612358 CACTATGTGTGCGGATTT-ATACAG
1 CACTATGTGTGCGGATTTGA-ATAG
106612382 CACTATGTGTGCGGATTTGAAT
1 CACTATGTGTGCGGATTTGAAT
106612404 CTTTGATATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 61 0.98
25 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (24 bp):
CACTATGTGTGCGGATTTGAATAG
Found at i:106614249 original size:32 final size:32
Alignment explanation
Indices: 106614210--106614368 Score: 239
Period size: 32 Copynumber: 5.0 Consensus size: 32
106614200 CATAAAAAAT
* *
106614210 ATCATACATTAGGTATACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
106614242 ATCATACATTAGTTTTGCATATAAAAAA-TAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
106614273 ATCATACATTAGGTTCACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* * *
106614305 ATCGTACATTAGTTTTGCATATGAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
106614337 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
106614369 CATAGTTATA
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
31 28 0.25
32 84 0.75
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:106614282 original size:63 final size:62
Alignment explanation
Indices: 106614201--106614368 Score: 259
Period size: 63 Copynumber: 2.7 Consensus size: 62
106614191 AATACCAAAC
106614201 ATAAAAAAT--ATCATACATTAGGTATACATATAAAAAAGTAGATCATACATTAGTTTTGCAT
1 ATAAAAAATAGATCATACATTAGGT-TACATATAAAAAAGTAGATCATACATTAGTTTTGCAT
*
106614262 ATAAAAAATAGATCATACATTAGGTTCACATATAAAAAAGTAGATCGTACATTAGTTTTGCAT
1 ATAAAAAATAGATCATACATTAGGTT-ACATATAAAAAAGTAGATCATACATTAGTTTTGCAT
* *
106614325 ATGAAAAAGTAGATCATACATTAGTTTTACATATAAAAAAGTAG
1 AT-AAAAAATAGATCATACATTAG-GTTACATATAAAAAAGTAG
106614369 CATAGTTATA
Statistics
Matches: 99, Mismatches: 3, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
61 9 0.09
62 1 0.01
63 51 0.52
64 36 0.36
65 2 0.02
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.32
Consensus pattern (62 bp):
ATAAAAAATAGATCATACATTAGGTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAT
Found at i:106619137 original size:18 final size:18
Alignment explanation
Indices: 106619114--106619154 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
106619104 TACTTTTCTC
106619114 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
106619132 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
106619150 TTTCT
1 TTTCT
106619155 TTTTTTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:106619360 original size:38 final size:39
Alignment explanation
Indices: 106619276--106619410 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
106619266 ACCAATATGG
*
106619276 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
106619315 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
106619353 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATTTAG-TGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAA--TAGTTGA
*
106619394 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
106619411 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 35 0.47
40 3 0.04
41 16 0.21
42 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:106620423 original size:25 final size:25
Alignment explanation
Indices: 106620367--106620413 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106620357 TGTAACTTTC
*
106620367 TTTCCTTT-TTTTACTTCTTTTACG
1 TTTCATTTGTTTTACTTCTTTTACG
*
106620391 TTTCATTTGTTTTATTTCTTTTA
1 TTTCATTTGTTTTACTTCTTTTA
106620414 TGTTATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.70
Consensus pattern (25 bp):
TTTCATTTGTTTTACTTCTTTTACG
Found at i:106620579 original size:8 final size:8
Alignment explanation
Indices: 106620566--106620590 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
106620556 AAATCTCATA
106620566 ATTTAATT
1 ATTTAATT
106620574 ATTTAATT
1 ATTTAATT
106620582 ATTTAATT
1 ATTTAATT
106620590 A
1 A
106620591 ACAAATATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATTTAATT
Found at i:106622602 original size:2 final size:2
Alignment explanation
Indices: 106622595--106622622 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
106622585 TTTGACCAAG
106622595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106622623 GTAACTTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106624122 original size:14 final size:14
Alignment explanation
Indices: 106624099--106624132 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
106624089 GACGAAACAG
106624099 AAAG-AAAAGAAAA
1 AAAGAAAAAGAAAA
106624112 AAAGAAAAAGAAAA
1 AAAGAAAAAGAAAA
*
106624126 GAAGAAA
1 AAAGAAA
106624133 TTTAGGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAGAAAA
Found at i:106624879 original size:36 final size:38
Alignment explanation
Indices: 106624799--106624890 Score: 109
Period size: 37 Copynumber: 2.5 Consensus size: 38
106624789 TGAATATATG
* *
106624799 TATTGAATTGAATAT-TGACTTGAAAATGGAAAAGTGAA
1 TATTGAATTGAAT-TGTGACTTGAAAATGAAAAAATGAA
* *
106624837 TTTTGAATTGAATTGTGA-TTGAAAGTGAAAAAATGAA
1 TATTGAATTGAATTGTGACTTGAAAATGAAAAAATGAA
*
106624874 -ATTGAATTGAAATGTGA
1 TATTGAATTGAATTGTGA
106624891 ATTTGGAGAC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
36 15 0.32
37 17 0.36
38 15 0.32
ACGTcount: A:0.43, C:0.01, G:0.22, T:0.34
Consensus pattern (38 bp):
TATTGAATTGAATTGTGACTTGAAAATGAAAAAATGAA
Found at i:106631115 original size:33 final size:33
Alignment explanation
Indices: 106631073--106631170 Score: 169
Period size: 33 Copynumber: 3.0 Consensus size: 33
106631063 TCACTTGTAC
*
106631073 TATTTGTAAATGTGACATGGTGAATAATGTTAG
1 TATTTGTAAACGTGACATGGTGAATAATGTTAG
106631106 TATTTGTAAACGTGACATGGTGAATAATGTTAG
1 TATTTGTAAACGTGACATGGTGAATAATGTTAG
* *
106631139 TATTTTTAAACGTGACATAGTGAATAATGTTA
1 TATTTGTAAACGTGACATGGTGAATAATGTTA
106631171 TTCTGAATCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (33 bp):
TATTTGTAAACGTGACATGGTGAATAATGTTAG
Found at i:106635466 original size:3 final size:3
Alignment explanation
Indices: 106635458--106635503 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
106635448 TGAAAACCAA
* *
106635458 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT TAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
106635504 CTTAATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:106639608 original size:17 final size:17
Alignment explanation
Indices: 106639588--106639621 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106639578 TTTTATTAAA
*
106639588 ATTTTTTATTCATTATT
1 ATTTTTTAATCATTATT
106639605 ATTTTTTAATCATTATT
1 ATTTTTTAATCATTATT
106639622 TACAAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATCATTATT
Found at i:106645857 original size:17 final size:16
Alignment explanation
Indices: 106645831--106645866 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
106645821 CAAAACAAAA
106645831 AGAATGAAAAAGAAAC
1 AGAATGAAAAAGAAAC
*
106645847 AGAATTGAAAACGAAAC
1 AGAA-TGAAAAAGAAAC
106645864 AGA
1 AGA
106645867 GAAGGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.64, C:0.08, G:0.19, T:0.08
Consensus pattern (16 bp):
AGAATGAAAAAGAAAC
Found at i:106646976 original size:18 final size:18
Alignment explanation
Indices: 106646935--106646980 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
106646925 CAATATGAAT
*
106646935 GATATTGAA-T-GATTAT
1 GATATTGAATTGGATTAG
106646951 GA-ATTTGAATTGGATTAG
1 GATA-TTGAATTGGATTAG
106646969 GATATTGAATTG
1 GATATTGAATTG
106646981 AGATATGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 1 0.04
16 7 0.28
17 1 0.04
18 15 0.60
19 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (18 bp):
GATATTGAATTGGATTAG
Found at i:106651253 original size:29 final size:28
Alignment explanation
Indices: 106651202--106651282 Score: 72
Period size: 29 Copynumber: 2.8 Consensus size: 28
106651192 GATTGGAATT
* ** *
106651202 GATTCGGGCCGAATGGGTTATATGAACGT
1 GATT-GGGCCTAATGGGCCATATGAACGA
* *
106651231 GTTTTGGGCCTAATGGGCCATATGAATGA
1 G-ATTGGGCCTAATGGGCCATATGAACGA
* *
106651260 GATTGAGCCTAGTGGGCCATATG
1 GATTGGGCCTAATGGGCCATATG
106651283 CATGTATGTA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
28 19 0.45
29 21 0.50
30 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.28
Consensus pattern (28 bp):
GATTGGGCCTAATGGGCCATATGAACGA
Found at i:106653296 original size:33 final size:32
Alignment explanation
Indices: 106653237--106653304 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
106653227 ACTTGAGGTG
*
106653237 TACATTTCTTTCCAAGTGGTACACACAAAGTA
1 TACATTTCTTTCCAAGTGGTACACACAAAATA
* *
106653269 TACATTTCCTTTTCATA-TGGTATACACAAAATA
1 TACATTT-CTTTCCA-AGTGGTACACACAAAATA
106653302 TAC
1 TAC
106653305 CTAACTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 7 0.23
33 23 0.74
34 1 0.03
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (32 bp):
TACATTTCTTTCCAAGTGGTACACACAAAATA
Found at i:106660997 original size:94 final size:92
Alignment explanation
Indices: 106660827--106661012 Score: 216
Period size: 94 Copynumber: 2.0 Consensus size: 92
106660817 CTCATTACAG
*
106660827 TTTACACTAATTGAAGAAAACATCATAAGCCATCAATTTGGATTCCACTACGTATGTTAAATATT
1 TTTACACTAATTGAAGAAAACATCATAAGCCATCAATTTGGATTCCACTACATATGTTAAATATT
*
106660892 GAAATTGTTTTTTGGACAGTTCATATTCCT
66 CAAATTG-TTTTT-GACAGTTCA-ATTCCT
* * * *** *
106660922 TTTATACTAATTGAAG-AAACGTCATAAGCCATCAATTTGTATTCTTTTGCATAT-TTGAAATAT
1 TTTACACTAATTGAAGAAAACATCATAAGCCATCAATTTGGATTCCACTACATATGTT-AAATAT
*
106660985 TCAAA-TGATTTTTGATAGTTCAATTCCT
65 TCAAATTG-TTTTTGACAGTTCAATTCCT
106661013 ATCAATTGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
91 6 0.08
92 8 0.10
93 9 0.11
94 41 0.52
95 15 0.19
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (92 bp):
TTTACACTAATTGAAGAAAACATCATAAGCCATCAATTTGGATTCCACTACATATGTTAAATATT
CAAATTGTTTTTGACAGTTCAATTCCT
Found at i:106667019 original size:16 final size:14
Alignment explanation
Indices: 106666993--106667033 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
106666983 TTTTAATTTT
106666993 ATTTT-AATAATAA
1 ATTTTAAATAATAA
106667006 ATTTTTAAAATAAT-A
1 A-TTTT-AAATAATAA
106667021 ATTTTAAATAATA
1 ATTTTAAATAATA
106667034 TTATTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 8 0.33
14 8 0.33
15 2 0.08
16 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTTTAAATAATAA
Found at i:106667086 original size:15 final size:15
Alignment explanation
Indices: 106667066--106667122 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
106667056 ATTCAATATT
106667066 AATATTTTAATAATA
1 AATATTTTAATAATA
*
106667081 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
106667100 AATATATTAATAATA
1 AATATTTTAATAATA
106667115 AATATTTT
1 AATATTTT
106667123 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:106677178 original size:2 final size:2
Alignment explanation
Indices: 106677171--106677206 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
106677161 CTTAAACATC
*
106677171 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106677207 TAAATAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:106684441 original size:42 final size:42
Alignment explanation
Indices: 106684314--106684477 Score: 141
Period size: 42 Copynumber: 3.9 Consensus size: 42
106684304 TAAGATACCA
* * * **
106684314 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCG
1 ATGCCATATCCCAAACATGGTCTTACACGAAATCACATATCG
* * ** * *
106684356 ATGTCGATAGCCC-AACTATGGTCTTACACGATGTCTCACATCG
1 ATG-CCATATCCCAAAC-ATGGTCTTACACGAAATCACATATCG
*
106684399 ATGCCATGTCCCAAACATGGTCTTACACGAAATCACATATCG
1 ATGCCATATCCCAAACATGGTCTTACACGAAATCACATATCG
* * * * * *
106684441 ATGTCATATCCTAGATATAGTCTTACATGAAATCACA
1 ATGCCATATCCCAAACATGGTCTTACACGAAATCACA
106684478 CATAACCCTA
Statistics
Matches: 95, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAAACATGGTCTTACACGAAATCACATATCG
Found at i:106693457 original size:17 final size:17
Alignment explanation
Indices: 106693435--106693468 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
106693425 TTTTCATATT
106693435 GCTATTCACGAATTTAA
1 GCTATTCACGAATTTAA
106693452 GCTATTCACGAATTTAA
1 GCTATTCACGAATTTAA
106693469 CTTCTTTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (17 bp):
GCTATTCACGAATTTAA
Found at i:106693722 original size:53 final size:52
Alignment explanation
Indices: 106693636--106693772 Score: 150
Period size: 53 Copynumber: 2.6 Consensus size: 52
106693626 GATCACATCA
* * *
106693636 CACACCGATGCCATATCCCAGATATGGTATTATACAGAATCACATTATCA-TGT
1 CACACCGATGCCATAGCCCAGATATGGTCTTATACAGAAACACA-TATCACT-T
* * *
106693689 CACACCGATGCCATAGCCCAGCTATAGTCTTATACCGAAACACATATCACTT
1 CACACCGATGCCATAGCCCAGATATGGTCTTATACAGAAACACATATCACTT
** * * *
106693741 TGCACCGATGTCATGGCCCAGTTATGGTCTTA
1 CACACCGATGCCATAGCCCAGATATGGTCTTA
106693773 AACGGGCACA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 32 0.45
53 39 0.55
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (52 bp):
CACACCGATGCCATAGCCCAGATATGGTCTTATACAGAAACACATATCACTT
Found at i:106697722 original size:20 final size:20
Alignment explanation
Indices: 106697684--106697731 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
106697674 TAAATTCTAA
* **
106697684 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
106697704 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
106697724 AAA-ATAAA
1 AAAGATAAA
106697732 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:106697756 original size:27 final size:26
Alignment explanation
Indices: 106697726--106697788 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
106697716 AGATAATTAA
106697726 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
106697753 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
106697780 AATATAAAT
1 AATA-AAAT
106697789 AAAATGGAGC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:106697775 original size:15 final size:15
Alignment explanation
Indices: 106697755--106697784 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
106697745 ATAATCCTAA
*
106697755 TAATTATCTTAATAT
1 TAATTATCCTAATAT
106697770 TAATTATCCTAATAT
1 TAATTATCCTAATAT
106697785 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:106698416 original size:24 final size:24
Alignment explanation
Indices: 106698389--106698489 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
106698379 AAGGCTGTTA
*
106698389 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
106698413 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
106698437 GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
106698461 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
106698485 GGAGA
1 GGAGA
106698490 ACGGTGTTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.34, C:0.04, G:0.43, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:106699889 original size:27 final size:27
Alignment explanation
Indices: 106699840--106699950 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
106699830 AGGAAGCGTC
* *
106699840 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCACAGTTATCTGTT
* *
106699867 CTGGTGGCACTGCTATA-TATATCTGTT
1 CTGGTGGCACTGCCACAGT-TATCTGTT
*
106699894 CTGGTGGCTCTGCCACAGTTATCTGTT
1 CTGGTGGCACTGCCACAGTTATCTGTT
* * *
106699921 CTGGTGACACTGTCAC-CTTATCTGTT
1 CTGGTGGCACTGCCACAGTTATCTGTT
106699947 CTGG
1 CTGG
106699951 CAGCTATGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 15 0.21
27 55 0.77
28 1 0.01
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAGTTATCTGTT
Found at i:106700712 original size:22 final size:22
Alignment explanation
Indices: 106700687--106700728 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
106700677 GGTGCACACA
*
106700687 TGGTGCACAGCTTCCATTCACT
1 TGGTGCACAGCTTCAATTCACT
106700709 TGGTGCACAGCTTCAATTCA
1 TGGTGCACAGCTTCAATTCA
106700729 TTTTAACCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (22 bp):
TGGTGCACAGCTTCAATTCACT
Found at i:106706233 original size:24 final size:24
Alignment explanation
Indices: 106706206--106706259 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
106706196 AAGGCTGTCA
106706206 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
106706230 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
106706254 GGAGAA
1 GGAGAA
106706260 CGGTGTTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:106707704 original size:27 final size:27
Alignment explanation
Indices: 106707674--106707760 Score: 99
Period size: 27 Copynumber: 3.2 Consensus size: 27
106707664 AGGAAGCGTC
*
106707674 CTGGTGGATATGCCACAATTATCTGAT
1 CTGGTGGATATGCCACAATTATCTGTT
106707701 CTGGTGGCACTA--CCAC-ATATATCTGTT
1 CTGGTGG-A-TATGCCACAAT-TATCTGTT
* *
106707728 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGATATGCCACAATTATCTGTT
106707755 CTGGTG
1 CTGGTG
106707761 ACACTGTCAC
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 43 0.84
28 3 0.06
29 2 0.04
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGATATGCCACAATTATCTGTT
Found at i:106707758 original size:54 final size:53
Alignment explanation
Indices: 106707674--106707784 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
106707664 AGGAAGCGTC
*
106707674 CTGGTGGATATGCCACAATTATCTGATCTGGTGGCACTACCACATATATCTGTT
1 CTGGTGGATATGCCACAATTATCTGATCTGGTGACACTACCACAT-TATCTGTT
* * * ** *
106707728 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATTTGTT
1 CTGGTGGATATGCCACAATTATCTGATCTGGTGACACTACCACATTATCTGTT
106707781 CTGG
1 CTGG
106707785 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (53 bp):
CTGGTGGATATGCCACAATTATCTGATCTGGTGACACTACCACATTATCTGTT
Found at i:106707781 original size:26 final size:26
Alignment explanation
Indices: 106707684--106707784 Score: 121
Period size: 27 Copynumber: 3.8 Consensus size: 26
106707674 CTGGTGGATA
*
106707684 TGCCACAATTATCTGATCTGGTGGCAC
1 TGCCAC-ATTATCTGTTCTGGTGGCAC
* *
106707711 TACCACATATATCTGTTCTGGTGGCTC
1 TGCCACAT-TATCTGTTCTGGTGGCAC
*
106707738 TGCCACAATTATCTGTTCTGGTGACAC
1 TGCCAC-ATTATCTGTTCTGGTGGCAC
* *
106707765 TGTCACATTATTTGTTCTGG
1 TGCCACATTATCTGTTCTGG
106707785 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
26 15 0.23
27 47 0.73
28 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGGCAC
Found at i:106712620 original size:14 final size:14
Alignment explanation
Indices: 106712598--106712644 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
106712588 GTTACTTAAC
*
106712598 ATATATATATTTTA
1 ATATTTATATTTTA
*
106712612 ATATTTATATTATA
1 ATATTTATATTTTA
*
106712626 AT-TTTATTTATTTA
1 ATATTTATAT-TTTA
106712640 ATATT
1 ATATT
106712645 CATTTGCTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 6 0.22
14 19 0.70
15 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATATTTATATTTTA
Found at i:106720788 original size:2 final size:2
Alignment explanation
Indices: 106720781--106720811 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
106720771 AAGATTAAAA
*
106720781 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106720812 GTTTTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:106726097 original size:76 final size:76
Alignment explanation
Indices: 106725971--106726153 Score: 249
Period size: 76 Copynumber: 2.4 Consensus size: 76
106725961 ACCTAGATCT
* ** *
106725971 CGCCACAAAGGCCTTTCAGATAATTCGCCACAATGGCTTCCCAGATAACTTCGCCATTAAAGCTC
1 CGCCACAAAGGCCTTTTAGATAATTCGCCACAAAAGCTTCCCAGATAACTTCGCCACTAAAGCTC
106726036 TCCAAATAATA
66 TCCAAATAATA
* * * *
106726047 CGCCACAAAGGCTTTTTAGATAATTCGCCACAAAAGCTTCCCAGATAACTTTGCCACTAAGGCTT
1 CGCCACAAAGGCCTTTTAGATAATTCGCCACAAAAGCTTCCCAGATAACTTCGCCACTAAAGCTC
* * *
106726112 TTCGAATGATA
66 TCCAAATAATA
* *
106726123 CACCACAAAGGCCTTTTAGATAATTCTCCAC
1 CGCCACAAAGGCCTTTTAGATAATTCGCCAC
106726154 TAAGGCTTTC
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 93 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (76 bp):
CGCCACAAAGGCCTTTTAGATAATTCGCCACAAAAGCTTCCCAGATAACTTCGCCACTAAAGCTC
TCCAAATAATA
Found at i:106726170 original size:25 final size:25
Alignment explanation
Indices: 106725970--106726171 Score: 142
Period size: 25 Copynumber: 8.0 Consensus size: 25
106725960 TACCTAGATC
106725970 TCGCCACAAAGGCCTTT-CAGATAAT
1 TCGCCACAAAGG-CTTTCCAGATAAT
* *
106725995 TCGCCACAATGGCTTCCCAGATAACT
1 TCGCCACAAAGGCTTTCCAGATAA-T
* * *
106726021 TCGCCATTAAA-GCTCTCCAAATAAT
1 TCGCCA-CAAAGGCTTTCCAGATAAT
* **
106726046 ACGCCACAAAGGCTTTTTAGATAAT
1 TCGCCACAAAGGCTTTCCAGATAAT
* *
106726071 TCGCCACAAAAGCTTCCCAGATAACT
1 TCGCCACAAAGGCTTTCCAGATAA-T
* * * *
106726097 TTGCCACTAAGGCTTTTC-GAATGAT
1 TCGCCACAAAGGCTTTCCAG-ATAAT
* * *
106726122 ACACCACAAAGGCCTTT-TAGATAAT
1 TCGCCACAAAGG-CTTTCCAGATAAT
* * *
106726147 TCTCCACTAAGGCTTTCCAAATAAT
1 TCGCCACAAAGGCTTTCCAGATAAT
106726172 AGGCATTTCA
Statistics
Matches: 133, Mismatches: 35, Indels: 18
0.72 0.19 0.10
Matches are distributed among these distances:
24 10 0.08
25 82 0.62
26 39 0.29
27 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (25 bp):
TCGCCACAAAGGCTTTCCAGATAAT
Found at i:106734320 original size:19 final size:17
Alignment explanation
Indices: 106734269--106734320 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 17
106734259 TCGGTTAATA
106734269 TATATTAAGTTTTTATAT
1 TATATTAA-TTTTTATAT
* *
106734287 TATATGTAGTATTTATTAT
1 TATAT-TAATTTTTA-TAT
106734306 TATTATTAATTTTTA
1 TA-TATTAATTTTTA
106734321 ATTTTGGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 10 0.37
19 14 0.52
20 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTAATTTTTATAT
Found at i:106735043 original size:24 final size:20
Alignment explanation
Indices: 106735017--106735071 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
106735007 TTTACATAAA
*
106735017 ATGAATGAAGCATGATCTAC
1 ATGAATGAATCATGATCTAC
106735037 ATGAATGAATCATGATCTAC
1 ATGAATGAATCATGATCTAC
106735057 ATGAATGAATCATGA
1 ATGAATGAATCATGA
106735072 AATATGACCG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (20 bp):
ATGAATGAATCATGATCTAC
Found at i:106735193 original size:14 final size:14
Alignment explanation
Indices: 106735157--106735195 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
106735147 TTGTTTTACT
*
106735157 GAAAATGACTTCCG
1 GAAAATGATTTCCG
*
106735171 GAAAATGATTTCTG
1 GAAAATGATTTCCG
106735185 GAAAATGATTT
1 GAAAATGATTT
106735196 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:106736922 original size:21 final size:23
Alignment explanation
Indices: 106736875--106736925 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
106736865 CATTCAAGAT
**
106736875 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
106736898 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
106736919 AAAATAA
1 AAAATAA
106736926 ATAATGTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 4 0.16
23 12 0.48
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:106736972 original size:25 final size:25
Alignment explanation
Indices: 106736899--106736992 Score: 82
Period size: 25 Copynumber: 3.7 Consensus size: 25
106736889 AACTCTTTAA
* *
106736899 AAATAATATATAAACAAT-TCAAAAT
1 AAATAATGTATAAA-AATATTAAAAT
* *
106736924 AAATAATGTGTAAAAAAAGTTTAAAAT
1 AAATAATGTATAAAAATA--TTAAAAT
* * * *
106736951 ACATAATTTATGAAAATATTAAAGT
1 AAATAATGTATAAAAATATTAAAAT
106736976 AAATAATGTATAAAAAT
1 AAATAATGTATAAAAAT
106736993 TTGAAATGAG
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
24 2 0.04
25 32 0.60
27 19 0.36
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
AAATAATGTATAAAAATATTAAAAT
Found at i:106747987 original size:77 final size:77
Alignment explanation
Indices: 106747860--106748012 Score: 263
Period size: 77 Copynumber: 2.0 Consensus size: 77
106747850 ATTATGTTAC
106747860 AGCACAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
1 AGCACAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
106747925 GGATACATTTCT
66 GGATACATTTCT
* * *
106747937 AGCACGAAGCTTG-GGGACTTTAGCCCGGATACATTTCCAGTACGAAGCCTGCGGGTCTTTAGCC
1 AGCAC-AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCC
106748001 CGGATACATTTC
65 CGGATACATTTC
106748013 CAGTGTCATT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
77 66 0.92
78 6 0.08
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (77 bp):
AGCACAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
GGATACATTTCT
Found at i:106748016 original size:39 final size:39
Alignment explanation
Indices: 106747859--106748015 Score: 264
Period size: 39 Copynumber: 4.1 Consensus size: 39
106747849 AATTATGTTA
106747859 CAGCAC-AAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
106747897 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
106747936 TAGCACGAAGCTTG-GGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
106747974 CAGTACGAAGCCTGCGGGTCTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
106748013 CAG
1 CAG
106748016 TGTCATTTAT
Statistics
Matches: 111, Mismatches: 6, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
38 41 0.37
39 70 0.63
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:106754149 original size:15 final size:15
Alignment explanation
Indices: 106754102--106754152 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
106754092 ACTATTTAAA
106754102 TAAATAGATATTTAT
1 TAAATAGATATTTAT
* * * *
106754117 TAATTA-TTATTAAG
1 TAAATAGATATTTAT
106754131 TAAATAGATATTTAT
1 TAAATAGATATTTAT
106754146 TAAATAG
1 TAAATAG
106754153 TTATATTATA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (15 bp):
TAAATAGATATTTAT
Found at i:106755170 original size:23 final size:23
Alignment explanation
Indices: 106755135--106755180 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
106755125 GATTTATAAT
*
106755135 ATTCTGGGTGTGTTTAGGTTGGAC
1 ATTCTGGGTGTGTTT-GGGTGGAC
106755159 ATTCT-GGTGTGTTTGGGTGGAC
1 ATTCTGGGTGTGTTTGGGTGGAC
106755181 TTCGCGTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 9 0.43
24 5 0.24
ACGTcount: A:0.11, C:0.09, G:0.39, T:0.41
Consensus pattern (23 bp):
ATTCTGGGTGTGTTTGGGTGGAC
Done.