Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 368 of 427
Found at i:106763825 original size:15 final size:15
Alignment explanation
Indices: 106763778--106763828 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
106763768 ACTATTTAAA
106763778 TAAATAGATATTTAT
1 TAAATAGATATTTAT
* * * *
106763793 TAATTA-TTATTAAG
1 TAAATAGATATTTAT
106763807 TAAATAGATATTTAT
1 TAAATAGATATTTAT
106763822 TAAATAG
1 TAAATAG
106763829 TTATATTATA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (15 bp):
TAAATAGATATTTAT
Found at i:106764853 original size:23 final size:23
Alignment explanation
Indices: 106764818--106764863 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
106764808 GATTTATAAT
*
106764818 ATTCTGGGTGTGTTTAGGTTGGAC
1 ATTCTGGGTGTGTTT-GGGTGGAC
106764842 ATTCT-GGTGTGTTTGGGTGGAC
1 ATTCTGGGTGTGTTTGGGTGGAC
106764864 TTCGCGTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 9 0.43
24 5 0.24
ACGTcount: A:0.11, C:0.09, G:0.39, T:0.41
Consensus pattern (23 bp):
ATTCTGGGTGTGTTTGGGTGGAC
Found at i:106770092 original size:10 final size:10
Alignment explanation
Indices: 106770077--106770106 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
106770067 AGTACTAATG
106770077 ATTTTAAATT
1 ATTTTAAATT
*
106770087 ATTTTAAATG
1 ATTTTAAATT
106770097 ATTTTAAATT
1 ATTTTAAATT
106770107 CAAGTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (10 bp):
ATTTTAAATT
Found at i:106770452 original size:21 final size:21
Alignment explanation
Indices: 106770428--106770481 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
106770418 GGACAACAAT
106770428 ACACGGGTGTGGTACCCTAAC
1 ACACGGGTGTGGTACCCTAAC
106770449 ACACGGGTGTGGTACCCTAAC
1 ACACGGGTGTGGTACCCTAAC
106770470 ACACGGGTGTGG
1 ACACGGGTGTGG
106770482 GAGAAGCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.26, G:0.33, T:0.19
Consensus pattern (21 bp):
ACACGGGTGTGGTACCCTAAC
Found at i:106776753 original size:46 final size:46
Alignment explanation
Indices: 106776700--106776875 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
106776690 TATTTGGGCA
106776700 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
106776746 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
106776793 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
106776839 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106776876 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:106776855 original size:93 final size:93
Alignment explanation
Indices: 106776696--106776867 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106776686 GGGATATTTG
* *
106776696 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106776761 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
106776789 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106776854 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106776868 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:106778724 original size:177 final size:177
Alignment explanation
Indices: 106778428--106779158 Score: 1129
Period size: 177 Copynumber: 4.1 Consensus size: 177
106778418 TGGTGGATTC
* * *
106778428 ACAGATCTTGTCTCTCTAAGTAGTAGTGGAGCAGATCGAAGACGGCGGATCTTATCTCCATGTAT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGGATCTTATCTCCATGTAT
* * *
106778493 CGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAACAAGAGAGCAAGTTGAAG
66 CAGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * *
106778558 ATACAAGTCTTATCTTCCTGAGGTAGTAAGGAAACAGACTAAAAACT
131 ATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAATT
* *
106778605 ACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAATACGGCGGATCTTATCTCCATGTAT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGGATCTTATCTCCATGTAT
* *
106778670 CAGCAATAGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
66 CAGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * **
106778735 ATACAAGTCTTATCTTACTGAGGTAGTAAGGAAGTAGACTGAAAATT
131 ATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAATT
* * * *
106778782 GCAGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGGATCTTATCTCTATGTAT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGGATCTTATCTCCATGTAT
* *
106778847 CAGTAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGGTTGAAG
66 CAGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* *
106778912 ATACAAGTCTTATCTTCCCGAGGTAGCAAGGAAGCAGACTGAAAATT
131 ATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAATT
* * * * *
106778959 ACAGATCTTATATCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAATCTTATCTCTATGTAT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGGATCTTATCTCCATGTAT
* * * * *
106779024 CTGCAATGGAACAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCACGAGAGCATGTTGAAG
66 CAGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
*
106779089 ATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAAATT
131 ATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAATT
*
106779136 ATAGATCTTATCTCCCTAAGCAG
1 ACAGATCTTATCTCCCTAAGCAG
106779159 GATCGAATAC
Statistics
Matches: 508, Mismatches: 46, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
177 508 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (177 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGGATCTTATCTCCATGTAT
CAGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
ATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAATT
Found at i:106781958 original size:43 final size:44
Alignment explanation
Indices: 106781911--106781996 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 44
106781901 GACAGTATAT
*
106781911 AAATAGAAATAGA-AATATAATAAA-TAGA-AAATTATAATAGTAG
1 AAATAGAAATAGATAA-ATAA-AAATTAGATAAATAATAATAGTAG
*
106781954 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
106781997 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
42 3 0.08
43 20 0.53
44 15 0.39
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAATTAGATAAATAATAATAGTAG
Found at i:106781981 original size:15 final size:14
Alignment explanation
Indices: 106781909--106782024 Score: 69
Period size: 15 Copynumber: 8.1 Consensus size: 14
106781899 TCGACAGTAT
*
106781909 ATAAATAGAAATAG
1 ATAAATAAAAATAG
106781923 A-AATATAATAAATAG
1 ATAA-ATAA-AAATAG
* *
106781938 A-AAATTATAATAG
1 ATAAATAAAAATAG
* *
106781951 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
106781966 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
106781981 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
106781995 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
106782010 ATAAATATAAATAG
1 ATAAATAAAAATAG
106782024 A
1 A
106782025 AACATAATAA
Statistics
Matches: 80, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
12 6 0.08
13 10 0.12
14 22 0.28
15 32 0.40
16 3 0.04
17 7 0.09
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.27
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:106781987 original size:29 final size:28
Alignment explanation
Indices: 106781954--106782024 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
106781944 ATAATAGTAG
106781954 AAATATAAATAGA-TA-AATAAAAATTAGAT
1 AAATATAAATAGATTAGAATAAAAA--A-AT
*
106781983 AAATA-ATAATAGTATTAGAATAACAAAAT
1 AAATATA-AATAG-ATTAGAATAAAAAAAT
106782012 AAATATAAATAGA
1 AAATATAAATAGA
106782025 AACATAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
28 2 0.06
29 22 0.61
30 3 0.08
31 2 0.06
32 7 0.19
ACGTcount: A:0.65, C:0.01, G:0.07, T:0.27
Consensus pattern (28 bp):
AAATATAAATAGATTAGAATAAAAAAAT
Found at i:106789286 original size:6 final size:6
Alignment explanation
Indices: 106789275--106789300 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
106789265 CTGCCCCTCG
106789275 CCGGCA CCGGCA CCGGCA CCGGCA CC
1 CCGGCA CCGGCA CCGGCA CCGGCA CC
106789301 AAGGCTGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.54, G:0.31, T:0.00
Consensus pattern (6 bp):
CCGGCA
Found at i:106793813 original size:2 final size:2
Alignment explanation
Indices: 106793806--106793832 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
106793796 AAGTGTTCAC
106793806 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
106793833 ATGAATTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106803981 original size:29 final size:27
Alignment explanation
Indices: 106803947--106804049 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
106803937 TACTCAATCA
*
106803947 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
106803976 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
106804005 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
106804034 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
106804050 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:106811802 original size:29 final size:27
Alignment explanation
Indices: 106811768--106811870 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
106811758 TACTCAATCA
*
106811768 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
106811797 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
106811826 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
106811855 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
106811871 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:106815526 original size:30 final size:30
Alignment explanation
Indices: 106815492--106815558 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
106815482 AATTAATAAA
*
106815492 AATAAAATTAT-ATTTTATCTCTCTAAAAAT
1 AATAAAATTATAATTTAATCT-TCTAAAAAT
* *
106815522 AATAAAATTCTAATTTAATCTTTTAAAAAT
1 AATAAAATTATAATTTAATCTTCTAAAAAT
*
106815552 TATAAAA
1 AATAAAA
106815559 ATTTAAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAAAATTATAATTTAATCTTCTAAAAAT
Found at i:106815563 original size:25 final size:25
Alignment explanation
Indices: 106815533--106815581 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
106815523 ATAAAATTCT
* *
106815533 AATTTAATCTTTTAAAAATTATAAA
1 AATTTAAACTATTAAAAATTATAAA
*
106815558 AATTTAAACTATTAAAATTTATAA
1 AATTTAAACTATTAAAAATTATAA
106815582 TTTAATTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
AATTTAAACTATTAAAAATTATAAA
Found at i:106819796 original size:16 final size:17
Alignment explanation
Indices: 106819745--106819814 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 17
106819735 TAGTGATTTG
106819745 ATATA-AATATAA-AT-
1 ATATATAATATAATATA
* * *
106819759 ATATATAATTATTATTTG
1 ATATATAA-TATAATATA
106819777 ATATATAAT-TAATATA
1 ATATATAATATAATATA
**
106819793 ATAT-TTTTATAATATA
1 ATATATAATATAATATA
106819809 ATATAT
1 ATATAT
106819815 TCAAGTTGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
14 5 0.12
15 4 0.09
16 23 0.53
17 3 0.07
18 8 0.19
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (17 bp):
ATATATAATATAATATA
Found at i:106820762 original size:30 final size:30
Alignment explanation
Indices: 106820704--106820767 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
106820694 GTTTTTGAAT
*
106820704 TTGATAATTAAGTTGACTTTGGTATTAAAC
1 TTGATAATTAAGTTGACTTTGATATTAAAC
* *
106820734 TTGATAATTAAGTT-ACTTTTATATTTAAAT
1 TTGATAATTAAGTTGACTTTGATA-TTAAAC
106820764 TTGA
1 TTGA
106820768 AAAATATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.48
Consensus pattern (30 bp):
TTGATAATTAAGTTGACTTTGATATTAAAC
Found at i:106821161 original size:31 final size:31
Alignment explanation
Indices: 106821116--106821196 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
106821106 TTGATAGAAT
* * **
106821116 CCAAATTTAGGGACCAAAATGTATTTAGTTG
1 CCAAATTTAAGGACCAAAATGGACCTAGTTG
* *
106821147 TCAATTTTAAGGACCAAAATGGACCTAGTTG
1 CCAAATTTAAGGACCAAAATGGACCTAGTTG
*
106821178 CCAAATTTAAGGGCCAAAA
1 CCAAATTTAAGGACCAAAA
106821197 ATTATATTCT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (31 bp):
CCAAATTTAAGGACCAAAATGGACCTAGTTG
Found at i:106838010 original size:21 final size:21
Alignment explanation
Indices: 106837984--106838024 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
106837974 AGACGAGCGA
* *
106837984 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
106838005 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
106838025 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:106841260 original size:13 final size:13
Alignment explanation
Indices: 106841242--106841266 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106841232 GTTAACTAAT
106841242 GTTATTTTTTAAG
1 GTTATTTTTTAAG
106841255 GTTATTTTTTAA
1 GTTATTTTTTAA
106841267 TGGAATCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (13 bp):
GTTATTTTTTAAG
Found at i:106842621 original size:15 final size:15
Alignment explanation
Indices: 106842601--106842638 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
106842591 TTGGTATCTT
106842601 ATTTTAATTT-CTTCA
1 ATTTTAATTTGCTT-A
*
106842616 ATTTTAATTTGGTTA
1 ATTTTAATTTGCTTA
106842631 ATTTTAAT
1 ATTTTAAT
106842639 CTTTATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 19 0.90
16 2 0.10
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (15 bp):
ATTTTAATTTGCTTA
Found at i:106851859 original size:20 final size:19
Alignment explanation
Indices: 106851801--106851863 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
106851791 TGAAATATAA
*
106851801 ATTTTGAAATTTTTATAAA-G
1 ATTTTG-AATTTTTA-AAATT
**
106851821 ATTTTGAATTTAAAAAATT
1 ATTTTGAATTTTTAAAATT
106851840 ATTTTGAATTTTTTAAAATT
1 ATTTTGAA-TTTTTAAAATT
106851860 ATTT
1 ATTT
106851864 CATTTTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.08
19 14 0.39
20 19 0.53
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAATT
Found at i:106866915 original size:83 final size:83
Alignment explanation
Indices: 106866760--106866916 Score: 199
Period size: 83 Copynumber: 1.9 Consensus size: 83
106866750 AAGCCTCCAT
* * * * * *
106866760 TTATATCAAAACACATGAGTTGCATACGCATGGTCAGTGGCTAACTCGAGTTTTAGGTAAATCAT
1 TTATATCAAAACACATGAGGTGCATACGCATAGTCAGTGACTAACTCGAGATTTAAGTAAATCAC
*
106866825 ACCATGAACATCATAAAC
66 ACAATGAACATCATAAAC
* * *
106866843 TTATATCAAAGCACATGAGGTGCATGCGTATAGTCAGTGACTAACTC-AGGATTTAAGTAAATCA
1 TTATATCAAAACACATGAGGTGCATACGCATAGTCAGTGACTAACTCGA-GATTTAAGTAAATCA
*
106866907 CATAATGAAC
65 CACAATGAAC
106866917 GTCACAAGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
82 1 0.02
83 61 0.98
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (83 bp):
TTATATCAAAACACATGAGGTGCATACGCATAGTCAGTGACTAACTCGAGATTTAAGTAAATCAC
ACAATGAACATCATAAAC
Found at i:106867299 original size:15 final size:15
Alignment explanation
Indices: 106867275--106867306 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
106867265 TATGTATGCA
*
106867275 AAATATAAAAGACAT
1 AAATACAAAAGACAT
106867290 AAATACAAAAGACAT
1 AAATACAAAAGACAT
106867305 AA
1 AA
106867307 TAATTAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:106869873 original size:22 final size:21
Alignment explanation
Indices: 106869845--106869885 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
106869835 AAATTTATTA
106869845 ATTTAAAAAATTATAAAAAAAT
1 ATTT-AAAAATTATAAAAAAAT
*
106869867 ATTTAAAAATTATTAAAAA
1 ATTTAAAAATTATAAAAAA
106869886 TAGAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTTAAAAATTATAAAAAAAT
Found at i:106869892 original size:28 final size:28
Alignment explanation
Indices: 106869861--106869914 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
106869851 AAAATTATAA
106869861 AAAAATATTTAAAAATT-ATTAAAAATAG
1 AAAAATATTT-AAAATTAATTAAAAATAG
*
106869889 AAAAATATTTAAATTTAATTAAAAAT
1 AAAAATATTTAAAATTAATTAAAAAT
106869915 TTAGAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAAATATTTAAAATTAATTAAAAATAG
Found at i:106870526 original size:22 final size:21
Alignment explanation
Indices: 106870488--106870530 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
106870478 TTTCATTAGG
106870488 TTTTTATACTTTTAATAATTTT
1 TTTTTATACTTTTAAT-ATTTT
106870510 TTTTTA-ACTTTTAAATATTTT
1 TTTTTATACTTTT-AATATTTT
106870531 CCAAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTATACTTTTAATATTTT
Found at i:106870739 original size:28 final size:29
Alignment explanation
Indices: 106870675--106870742 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
106870665 TTTTAATAAA
* *
106870675 CTTTGTATATTTTTAATAAATTTTAAATAG
1 CTTTCTATA-TTTTAATAAATTTAAAATAG
* * *
106870705 ATATCTATATTTTCATAAA-TTAAAATAG
1 CTTTCTATATTTTAATAAATTTAAAATAG
106870733 CTTTCTATAT
1 CTTTCTATAT
106870743 ATTTTTACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
28 16 0.52
29 9 0.29
30 6 0.19
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.50
Consensus pattern (29 bp):
CTTTCTATATTTTAATAAATTTAAAATAG
Found at i:106873758 original size:19 final size:18
Alignment explanation
Indices: 106873734--106873775 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
106873724 TATTAGTAAT
*
106873734 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
106873753 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
106873771 AATAA
1 AATAA
106873776 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:106874174 original size:13 final size:13
Alignment explanation
Indices: 106874158--106874220 Score: 89
Period size: 13 Copynumber: 5.2 Consensus size: 13
106874148 GTTGGGATGA
106874158 TTTAGTGGGGTGG
1 TTTAGTGGGGTGG
106874171 TTTAGTGGGGTGG
1 TTTAGTGGGGTGG
*
106874184 --T--TGGAGTGG
1 TTTAGTGGGGTGG
106874193 TTTAGTGGGGTGG
1 TTTAGTGGGGTGG
106874206 TTTAGTGGGGTGG
1 TTTAGTGGGGTGG
106874219 TT
1 TT
106874221 GGAGTGAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 7 0.16
11 2 0.05
13 35 0.80
ACGTcount: A:0.08, C:0.00, G:0.52, T:0.40
Consensus pattern (13 bp):
TTTAGTGGGGTGG
Found at i:106874185 original size:35 final size:36
Alignment explanation
Indices: 106874139--106874227 Score: 139
Period size: 35 Copynumber: 2.6 Consensus size: 36
106874129 TTTGTTGGCA
*
106874139 AGTGGAGTGGTTGGGA-TGATTTAGTGGGGTGGTTT
1 AGTGGGGTGGTTGGGAGTGATTTAGTGGGGTGGTTT
*
106874174 AGTGGGGTGGTT-GGAGTGGTTTAGTGGGGTGGTTT
1 AGTGGGGTGGTTGGGAGTGATTTAGTGGGGTGGTTT
106874209 AGTGGGGTGGTT-GGAGTGA
1 AGTGGGGTGGTTGGGAGTGA
106874228 AGATATTTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
34 3 0.06
35 47 0.94
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.35
Consensus pattern (36 bp):
AGTGGGGTGGTTGGGAGTGATTTAGTGGGGTGGTTT
Found at i:106874321 original size:15 final size:16
Alignment explanation
Indices: 106874301--106874330 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106874291 CTTTGGAGGT
106874301 TGTTGGG-TTTTTAGA
1 TGTTGGGCTTTTTAGA
106874316 TGTTGGGCTTTTTAG
1 TGTTGGGCTTTTTAG
106874331 CCCAGGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TGTTGGGCTTTTTAGA
Found at i:106875177 original size:206 final size:206
Alignment explanation
Indices: 106874701--106875366 Score: 1049
Period size: 206 Copynumber: 3.3 Consensus size: 206
106874691 TAAATCTGCT
* * *
106874701 TCTTAGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* * **
106874766 ATCTGAAGGCCAAATCTGCTATGTATCTGTTCTCCGTTAAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
** *
106874831 TTCTCTGACAATACAGAGATATCAAATCATCTTAGA----C-TT-GCGTAAGCATGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
106874890 AATCAGCTATA
196 AATCAGCTATG
* * *
106874901 TCTTTGATTTGCTCCTTGTAAGCACAAAGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
106874966 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGTTGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
106875031 TTCTCTGATAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
106875096 AATCAGCTATG
196 AATCAGCTATG
* *
106875107 TCTCCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATATTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* * *
106875172 ATCTGAAGGTCGGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* * *
106875237 TTCTCTGACAATACAAATATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGTCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
106875302 AATCAGCTATG
196 AATCAGCTATG
* *
106875313 TCTTCGATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTTGGATC-TGCTT
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTT
106875367 TAGCCAGATC
Statistics
Matches: 428, Mismatches: 32, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
200 153 0.36
204 1 0.00
205 7 0.02
206 267 0.62
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
AATCAGCTATG
Found at i:106884623 original size:23 final size:23
Alignment explanation
Indices: 106884597--106884681 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
106884587 ACAAAAAAAG
106884597 AAAATATAATAATAATAATAGTA
1 AAAATATAATAATAATAATAGTA
* * * *
106884620 AAAACACAATAGTAATAATAATGA
1 AAAATATAATAATAATAATAGT-A
* *
106884644 AAAGGTATTATAAT-ATAATAGTA
1 AAA-ATATAATAATAATAATAGTA
* *
106884667 ATAATGATGATAATA
1 AAAAT-ATAATAATA
106884682 GTGGTATTAG
Statistics
Matches: 45, Mismatches: 13, Indels: 7
0.69 0.20 0.11
Matches are distributed among these distances:
22 1 0.02
23 28 0.62
24 11 0.24
25 5 0.11
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAATATAATAATAATAATAGTA
Found at i:106884669 original size:33 final size:38
Alignment explanation
Indices: 106884627--106884708 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
106884617 GTAAAAACAC
106884627 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
106884660 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
106884699 AATAATAATA
1 AATAGTAATA
106884709 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:106884717 original size:19 final size:18
Alignment explanation
Indices: 106884693--106884734 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
106884683 TGGTATTAGT
*
106884693 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
106884712 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
106884730 AATAA
1 AATAA
106884735 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:106885132 original size:22 final size:22
Alignment explanation
Indices: 106885097--106885139 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
106885087 TTTGTAGGCA
*
106885097 AGTGGAGTGGTTGGGATGGTTT
1 AGTGGAGTGATTGGGATGGTTT
* *
106885119 AGTGGGGTGATTGGGGTGGTT
1 AGTGGAGTGATTGGGATGGTT
106885140 GGAGTGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.35
Consensus pattern (22 bp):
AGTGGAGTGATTGGGATGGTTT
Found at i:106885263 original size:16 final size:15
Alignment explanation
Indices: 106885222--106885266 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
106885212 CTTTGGAGGT
** *
106885222 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
106885237 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
106885252 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
106885267 CCCGGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:106886106 original size:10 final size:10
Alignment explanation
Indices: 106886091--106886129 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
106886081 AATTTTAGCT
106886091 TTTATCTTTA
1 TTTATCTTTA
106886101 TTTATCTTTA
1 TTTATCTTTA
106886111 TTTAT-TTGTA
1 TTTATCTT-TA
106886121 TTTATCTTT
1 TTTATCTTT
106886130 TAGAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.72
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:106890113 original size:15 final size:16
Alignment explanation
Indices: 106890093--106890122 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106890083 TAATAACATG
106890093 ATTTAATTTT-TATTC
1 ATTTAATTTTATATTC
106890108 ATTTAATTTTATATT
1 ATTTAATTTTATATT
106890123 GATATTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTAATTTTATATTC
Found at i:106893281 original size:16 final size:16
Alignment explanation
Indices: 106893260--106893290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106893250 CAATTCTGAT
106893260 TTTAGTTTAAGTTTTC
1 TTTAGTTTAAGTTTTC
*
106893276 TTTAGTTTTAGTTTT
1 TTTAGTTTAAGTTTT
106893291 GTTTCGAGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68
Consensus pattern (16 bp):
TTTAGTTTAAGTTTTC
Found at i:106893533 original size:3 final size:3
Alignment explanation
Indices: 106893525--106893570 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
106893515 TCTATATCTA
106893525 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
106893571 CTTAAACCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:106898461 original size:18 final size:18
Alignment explanation
Indices: 106898434--106898468 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
106898424 TTAAAATCAG
106898434 TTGCAAAAATAAGACTAC
1 TTGCAAAAATAAGACTAC
*
106898452 TTGCATAAATAAGACTA
1 TTGCAAAAATAAGACTA
106898469 AAAAACATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (18 bp):
TTGCAAAAATAAGACTAC
Found at i:106913896 original size:10 final size:11
Alignment explanation
Indices: 106913867--106913905 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
106913857 TATATTTTGT
106913867 TTCTTTTTCTT-
1 TTCTTTTT-TTA
106913878 TCTCTTTTTTTA
1 T-TCTTTTTTTA
106913890 TTCTTTTTTTA
1 TTCTTTTTTTA
106913901 TTCTT
1 TTCTT
106913906 GTGGAGACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.79
Consensus pattern (11 bp):
TTCTTTTTTTA
Found at i:106918007 original size:15 final size:17
Alignment explanation
Indices: 106917987--106918019 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
106917977 GTTATTTAAT
106917987 TAAAATAT-T-TATACA
1 TAAAATATATATATACA
106918002 TAAAATATATATATACA
1 TAAAATATATATATACA
106918019 T
1 T
106918020 GCACAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAATATATATATACA
Found at i:106921449 original size:35 final size:36
Alignment explanation
Indices: 106921402--106921469 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 36
106921392 TGTAATAATG
* *
106921402 ATATATACACAATATGGTA-TTAAGAATATATATAT
1 ATATATACACAATATAGTATTTAAAAATATATATAT
*
106921437 ATATATATACAATATAGTATTTAAAAATATATA
1 ATATATACACAATATAGTATTTAAAAATATATA
106921470 CATAACATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 17 0.59
36 12 0.41
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.38
Consensus pattern (36 bp):
ATATATACACAATATAGTATTTAAAAATATATATAT
Found at i:106921480 original size:35 final size:35
Alignment explanation
Indices: 106921410--106921480 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
106921400 TGATATATAC
* * * *
106921410 ACAATATGGTATTAAGAATATATATATATATATAT
1 ACAATATAGTATTAAAAATATATACATATACATAT
106921445 ACAATATAGTATTTAAAAATATATACATA-ACATAT
1 ACAATATAGTA-TTAAAAATATATACATATACATAT
106921480 A
1 A
106921481 TAAAACATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.37
Consensus pattern (35 bp):
ACAATATAGTATTAAAAATATATACATATACATAT
Found at i:106921575 original size:16 final size:17
Alignment explanation
Indices: 106921544--106921578 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
106921534 AACTACTTTG
106921544 TACACTACACAAATATA
1 TACACTACACAAATATA
*
106921561 TACAC-ACACACATATA
1 TACACTACACAAATATA
106921577 TA
1 TA
106921579 TATATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (17 bp):
TACACTACACAAATATA
Found at i:106921577 original size:18 final size:19
Alignment explanation
Indices: 106921545--106921580 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
106921535 ACTACTTTGT
106921545 ACACTACACAAATATATAC
1 ACACTACACAAATATATAC
*
106921564 ACAC-ACACATATATATA
1 ACACTACACAAATATATA
106921581 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (19 bp):
ACACTACACAAATATATAC
Found at i:106921625 original size:21 final size:22
Alignment explanation
Indices: 106921588--106921678 Score: 100
Period size: 22 Copynumber: 4.2 Consensus size: 22
106921578 ATATATATAT
*
106921588 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTAGAA
106921609 ATATACAAT-ATAATATTAGAA
1 ATATACAATAATAATATTAGAA
* *
106921630 ATATACATATAATAGTA-TAAAA
1 ATATACA-ATAATAATATTAGAA
*
106921652 ATATATAACTAATAATATTA-AA
1 ATATACAA-TAATAATATTAGAA
106921674 ATATA
1 ATATA
106921679 TGTAATAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
21 24 0.40
22 29 0.48
23 7 0.12
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.34
Consensus pattern (22 bp):
ATATACAATAATAATATTAGAA
Found at i:106921641 original size:20 final size:21
Alignment explanation
Indices: 106921588--106921678 Score: 89
Period size: 21 Copynumber: 4.2 Consensus size: 21
106921578 ATATATATAT
*
106921588 ATATA-AATAATAGTATTAGAA
1 ATATACAAT-ATAATATTAGAA
106921609 ATATACAATATAATATTAGAA
1 ATATACAATATAATATTAGAA
*
106921630 ATATAC-ATATAATAGTATAAAA
1 ATATACAATATAATA-T-TAGAA
*
106921652 ATATATAACTAATAATATTA-AA
1 ATATACAA-T-ATAATATTAGAA
106921674 ATATA
1 ATATA
106921679 TGTAATAATA
Statistics
Matches: 61, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
20 8 0.13
21 23 0.38
22 19 0.31
23 3 0.05
24 2 0.03
25 6 0.10
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.34
Consensus pattern (21 bp):
ATATACAATATAATATTAGAA
Found at i:106921684 original size:20 final size:20
Alignment explanation
Indices: 106921588--106921704 Score: 87
Period size: 21 Copynumber: 5.6 Consensus size: 20
106921578 ATATATATAT
* *
106921588 ATATAAATAATAGTATTAGAA
1 ATATATATAATAATATTA-AA
*
106921609 ATATACA-ATATAATATTAGAA
1 ATATATATA-ATAATATTA-AA
* *
106921630 ATATACATATAATAGTATAAAA
1 ATAT--ATATAATAATATTAAA
106921652 ATATATAACTAATAATATTAAA
1 ATATAT-A-TAATAATATTAAA
*
106921674 ATATATGTAATAATATATAAA
1 ATATATATAATAATAT-TAAA
106921695 A-A-ATATAATA
1 ATATATATAATA
106921705 TTGAAAACAT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
19 7 0.09
20 13 0.16
21 27 0.34
22 23 0.29
23 9 0.11
24 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (20 bp):
ATATATATAATAATATTAAA
Found at i:106921929 original size:17 final size:16
Alignment explanation
Indices: 106921903--106921934 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
106921893 CTATATATAA
106921903 ATATATATACATACAT
1 ATATATATACATACAT
106921919 ATATAATATACATACA
1 ATAT-ATATACATACA
106921935 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:106921950 original size:3 final size:3
Alignment explanation
Indices: 106921936--106922098 Score: 65
Period size: 3 Copynumber: 54.7 Consensus size: 3
106921926 ATACATACAC
* *
106921936 TAA TAT TAA TAA TAA TAA TAA -AA CTAGA -AA TAA TAA -AA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
106921981 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
106922026 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* *
106922071 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
106922099 TGTAAAAAAA
Statistics
Matches: 117, Mismatches: 26, Indels: 34
0.66 0.15 0.19
Matches are distributed among these distances:
2 15 0.13
3 91 0.78
4 10 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:106922416 original size:5 final size:5
Alignment explanation
Indices: 106922406--106922435 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
106922396 TAGGGTAAGA
*
106922406 CGGGT CGGGT CGGGT CGGGT CGGAT CGGGT
1 CGGGT CGGGT CGGGT CGGGT CGGGT CGGGT
106922436 TAGGCCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.03, C:0.20, G:0.57, T:0.20
Consensus pattern (5 bp):
CGGGT
Found at i:106922744 original size:19 final size:20
Alignment explanation
Indices: 106922720--106922776 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 20
106922710 GTATATATAT
106922720 AAAGAAAGAAAAAAA-CAAA
1 AAAGAAAGAAAAAAATCAAA
106922739 AAAGAAAGAAAAAAGATTCAAA
1 AAAGAAAGAAAAAA-A-TCAAA
106922761 AGAAG-AAGAAAAAAAT
1 A-AAGAAAGAAAAAAAT
106922777 GCAACCTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
19 14 0.41
20 2 0.06
21 1 0.03
22 14 0.41
23 3 0.09
ACGTcount: A:0.77, C:0.04, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAGAAAGAAAAAAATCAAA
Found at i:106924344 original size:50 final size:50
Alignment explanation
Indices: 106924287--106924769 Score: 409
Period size: 50 Copynumber: 9.8 Consensus size: 50
106924277 TGATGTTAGG
*
106924287 GATATATGAGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
* * * *
106924337 GAGATATGAGAGCTAGTGTAAG-CTCGTGTCTGGAACATGGCATCGA-TACC
1 GATATATGAGAGCTAGTGTAAGAC-CATGTCTGGGACATGGCATCGACT-TC
* * **
106924387 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
* *
106924437 GATAGATGAGAGCTAGTGTAAGATCATGTCTGGGACATGGCATCGACTT-
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
* * * * **
106924486 G--ATATGTG-TC-AGTCTAAGACCATGTCTGGGACATGGCATCGGCACC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
* * * * * *
106924532 AATAGATGAGAGCCACTGTAAGACCATGTCTGGGATATGGCATCGGCCTT-
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTC
* * * * **
106924582 AATATACGAGAG-TCAGTGTAAGACCTTATCTGGGACATGGCATCGACACC
1 GATATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
* * * * * *
106924632 GATAGATGAGAG-TCAATGTAAGACCATGTATGGGATATGGCATCGGCCTC
1 GATATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
* * * * *
106924682 AATATACGAGAG-TCAGTGTAAGACCAT-TTTGGGACATGACATCGACTTT
1 GATATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
*** * *
106924731 GATGGGT-A-AGCCAGTGTAAGACCATGTCCGGGACATGGC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
106924770 GTCGGCACCT
Statistics
Matches: 346, Mismatches: 73, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
45 30 0.09
46 1 0.00
47 20 0.06
48 16 0.05
49 24 0.07
50 252 0.73
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (50 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTC
Found at i:106926417 original size:30 final size:30
Alignment explanation
Indices: 106926383--106926439 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
106926373 TTTATAAAAA
*
106926383 TTATAAAAATCCTAAAAAAATTGTAAATTT
1 TTATAAAAATCCTAAAAAAATTATAAATTT
**
106926413 TTATAAAAATTGTAAAAAAATTATAAA
1 TTATAAAAATCCTAAAAAAATTATAAA
106926440 ATATATAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (30 bp):
TTATAAAAATCCTAAAAAAATTATAAATTT
Found at i:106926517 original size:19 final size:20
Alignment explanation
Indices: 106926495--106926532 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
106926485 TATAAAAAAA
106926495 GTAAAGAAA-TATAA-AATTC
1 GTAAA-AAATTATAATAATTC
106926514 GTAAAAAATTATAATAATT
1 GTAAAAAATTATAATAATT
106926533 ATCGTAACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 10 0.59
20 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (20 bp):
GTAAAAAATTATAATAATTC
Found at i:106927610 original size:23 final size:23
Alignment explanation
Indices: 106927574--106927618 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
106927564 GGAAGGCAAT
106927574 AATAATAGATAGA-TAAATAAATA
1 AATAATAGATAGATTAAA-AAATA
106927597 AATAATA-ATAAGATTAAAAAAT
1 AATAATAGAT-AGATTAAAAAAT
106927619 CCATGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 2 0.10
23 14 0.70
24 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (23 bp):
AATAATAGATAGATTAAAAAATA
Found at i:106930885 original size:8 final size:8
Alignment explanation
Indices: 106930850--106930896 Score: 60
Period size: 8 Copynumber: 5.6 Consensus size: 8
106930840 TGGAAGATGT
106930850 TTAAATTAA
1 TTAAATT-A
106930859 TTAAA-TA
1 TTAAATTA
106930866 TTAAATATTA
1 TT-AA-ATTA
106930876 TTAAATTA
1 TTAAATTA
106930884 TTAAATTA
1 TTAAATTA
106930892 TTAAA
1 TTAAA
106930897 ATATACTCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
7 3 0.09
8 20 0.57
9 8 0.23
10 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TTAAATTA
Found at i:106934213 original size:56 final size:55
Alignment explanation
Indices: 106934069--106934217 Score: 199
Period size: 57 Copynumber: 2.7 Consensus size: 55
106934059 TATTAGTAAT
** * *
106934069 TTTTTTTTGTTATCCAATTATGAAAAGTTACAAAATGGTTACTCAATTATTAATA
1 TTTTTTTTGTCGTCCAACTATGAAAAGTTACAAAATGGTTACTCAATTATTATTA
* * * *
106934124 TCCTTTTTTGGCTGTTCAACTTTGAAAAGTTACAAAATGGTTACTCAATTATTATTA
1 T-TTTTTTTGTC-GTCCAACTATGAAAAGTTACAAAATGGTTACTCAATTATTATTA
106934181 TTTTTTTTAGTCGTCCAACTATGAAAAGTTACAAAAT
1 TTTTTTTT-GTCGTCCAACTATGAAAAGTTACAAAAT
106934218 AGTCGCTCAA
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
55 1 0.01
56 36 0.46
57 42 0.53
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.44
Consensus pattern (55 bp):
TTTTTTTTGTCGTCCAACTATGAAAAGTTACAAAATGGTTACTCAATTATTATTA
Found at i:106934227 original size:56 final size:55
Alignment explanation
Indices: 106934047--106934249 Score: 183
Period size: 57 Copynumber: 3.6 Consensus size: 55
106934037 ACAATTCTAG
* ** *
106934047 TAGTCACTCAACTATTAGTAATTTTTTTTTGTTATCCAATTATGAAAAGTTACAAAA
1 TAGTCACTCAACTATTA-TTA-TTTTTTTTGTCGTCCAACTATGAAAAGTTACAAAA
* * * * * * * *
106934104 TGGTTACTCAATTATTAATATCCTTTTTTGGCTGTTCAACTTTGAAAAGTTACAAAA
1 TAGTCACTCAACTATTATTAT-TTTTTTTGTC-GTCCAACTATGAAAAGTTACAAAA
* * *
106934161 TGGTTACTCAATTATTATTATTTTTTTTAGTCGTCCAACTATGAAAAGTTACAAAA
1 TAGTCACTCAACTATTATTATTTTTTTT-GTCGTCCAACTATGAAAAGTTACAAAA
*
106934217 TAGTCGCTCAACTATTTAATT-TTATTTTTTGTC
1 TAGTCACTCAACTA-TT-ATTATT-TTTTTTGTC
106934250 ACTAACTAAC
Statistics
Matches: 119, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
55 1 0.01
56 46 0.39
57 63 0.53
58 9 0.08
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.44
Consensus pattern (55 bp):
TAGTCACTCAACTATTATTATTTTTTTTGTCGTCCAACTATGAAAAGTTACAAAA
Found at i:106942272 original size:40 final size:40
Alignment explanation
Indices: 106942227--106942393 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
106942217 CGGAATATAA
106942227 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106942267 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
106942307 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106942347 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106942386 CCGGATAT
1 CCGGATAT
106942394 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106942377 original size:80 final size:79
Alignment explanation
Indices: 106942227--106942393 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
106942217 CGGAATATAA
* *
106942227 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
106942292 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
106942307 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
106942369 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
106942386 CCGGATAT
1 CCGGATAT
106942394 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:106943242 original size:17 final size:19
Alignment explanation
Indices: 106943219--106943264 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
106943209 AAGAAGCATG
106943219 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
106943237 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
106943255 AATCATGCTC
1 AATCATGCTC
106943265 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:106946460 original size:26 final size:26
Alignment explanation
Indices: 106946431--106946538 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
106946421 TGGTACAAAT
*
106946431 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
106946457 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
106946483 TGATAATGGATTAGGTAAATGTTACA
1 TGATAATGGATTAGGTAAATGTTCCA
*
106946509 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
106946535 TGAT
1 TGAT
106946539 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:106959140 original size:2 final size:2
Alignment explanation
Indices: 106959133--106959160 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
106959123 TTTATGCAAA
106959133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106959161 TTAAGTTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106963648 original size:24 final size:23
Alignment explanation
Indices: 106963610--106963654 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
106963600 TTAATATATG
*
106963610 AAATATAAATTTTAAATATTTTT
1 AAATATAAATATTAAATATTTTT
*
106963633 AAATAATAAATATTAATTATTT
1 AAAT-ATAAATATTAAATATTT
106963655 AACATAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATATAAATATTAAATATTTTT
Found at i:106974663 original size:24 final size:24
Alignment explanation
Indices: 106974636--106974683 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
106974626 AAAAAATTAA
106974636 TAATCAAATTGAAAAATTAAATGT
1 TAATCAAATTGAAAAATTAAATGT
106974660 TAATCAAATTGAAAAATTAAATGT
1 TAATCAAATTGAAAAATTAAATGT
106974684 GGCTTTGTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.33
Consensus pattern (24 bp):
TAATCAAATTGAAAAATTAAATGT
Found at i:106976878 original size:16 final size:16
Alignment explanation
Indices: 106976853--106976883 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106976843 CACCACTTGG
*
106976853 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
106976869 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
106976884 TCATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:106981491 original size:16 final size:16
Alignment explanation
Indices: 106981466--106981496 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106981456 CACCACTTGG
*
106981466 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
106981482 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
106981497 TCATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:106982523 original size:5 final size:5
Alignment explanation
Indices: 106982513--106982568 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
106982503 ATATTTAAGT
106982513 ATATA ATATA ATAATA ATA-A TATAATA ATATA ATA-A TATAATA ATATA
1 ATATA ATATA AT-ATA ATATA -AT-ATA ATATA ATATA -AT-ATA ATATA
106982561 ATATA ATA
1 ATATA ATA
106982569 AACATAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
4 2 0.05
5 29 0.66
6 11 0.25
7 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:106982528 original size:3 final size:3
Alignment explanation
Indices: 106982515--106982569 Score: 68
Period size: 3 Copynumber: 20.3 Consensus size: 3
106982505 ATTTAAGTAT
106982515 ATA AT- ATA ATA ATA ATA AT- ATA ATA AT- ATA ATA AT- ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106982558 ATA AT- ATA ATA A
1 ATA ATA ATA ATA A
106982570 ACATAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
2 12 0.26
3 34 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:106982569 original size:8 final size:8
Alignment explanation
Indices: 106982515--106982563 Score: 84
Period size: 8 Copynumber: 6.4 Consensus size: 8
106982505 ATTTAAGTAT
106982515 ATAATATA
1 ATAATATA
106982523 AT-A-ATA
1 ATAATATA
106982529 ATAATATA
1 ATAATATA
106982537 ATAATATA
1 ATAATATA
106982545 ATAATATA
1 ATAATATA
106982553 ATAATATA
1 ATAATATA
106982561 ATA
1 ATA
106982564 TAATAAACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 5 0.13
7 2 0.05
8 32 0.82
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:106982579 original size:16 final size:15
Alignment explanation
Indices: 106982515--106982570 Score: 82
Period size: 14 Copynumber: 3.9 Consensus size: 15
106982505 ATTTAAGTAT
106982515 ATAATATAAT-AATA
1 ATAATATAATAAATA
106982529 ATAATATAATAATATA
1 ATAATATAATAA-ATA
106982545 ATAATATAAT-AAT-
1 ATAATATAATAAATA
106982558 ATAATATAATAAA
1 ATAATATAATAAA
106982571 CATAAAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
13 10 0.26
14 14 0.36
15 2 0.05
16 13 0.33
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAATATAATAAATA
Found at i:106984501 original size:53 final size:53
Alignment explanation
Indices: 106984360--106984510 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
106984350 ACAAGTGTGC
* **
106984360 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
106984413 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
106984466 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
106984511 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:106992006 original size:53 final size:53
Alignment explanation
Indices: 106991865--106992015 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
106991855 ACAAGTGTGC
* **
106991865 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
106991918 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
106991971 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
106992016 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:106996123 original size:14 final size:15
Alignment explanation
Indices: 106996104--106996144 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
106996094 ATTGATTAGT
106996104 TAATTAAAATA-AAA
1 TAATTAAAATATAAA
*
106996118 TAATTAAATTATAAA
1 TAATTAAAATATAAA
106996133 -AATTATAAATAT
1 TAATTA-AAATAT
106996145 TTATAGCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAATTAAAATATAAA
Found at i:107000414 original size:26 final size:27
Alignment explanation
Indices: 107000365--107000418 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
107000355 GCATATGTTC
*
107000365 TTTGAAGAGGCCTTTTTTTTTTTCTTT
1 TTTGAAGAGGCCTTTTTTCTTTTCTTT
107000392 TTTGAAGAGGCC-TTTTTCTTTTCTTT
1 TTTGAAGAGGCCTTTTTTCTTTTCTTT
107000418 T
1 T
107000419 CTTTTCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.11, C:0.13, G:0.15, T:0.61
Consensus pattern (27 bp):
TTTGAAGAGGCCTTTTTTCTTTTCTTT
Found at i:107009559 original size:18 final size:15
Alignment explanation
Indices: 107009510--107009567 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
107009500 CAAAAAAATC
* *
107009510 AAAAATAAGAAATTA
1 AAAAATAAAAAATTT
107009525 AAAAATAAAAAATTT
1 AAAAATAAAAAATTT
107009540 AAAAATAGAAAAGTATTT
1 AAAAATA-AAAA--ATTT
107009558 AAAAATAAAA
1 AAAAATAAAA
107009568 TTTTTGATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
15 20 0.53
16 4 0.11
17 3 0.08
18 11 0.29
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.22
Consensus pattern (15 bp):
AAAAATAAAAAATTT
Found at i:107016074 original size:13 final size:13
Alignment explanation
Indices: 107016020--107016082 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
107016010 AGCACTCAAA
*
107016020 TTTTAAAAGTACT
1 TTTTAAAAATACT
*
107016033 TTTAAAAATAGTACT
1 TTTTAAAA-A-TACT
* * **
107016048 TTTTCATAGCACT
1 TTTTAAAAATACT
107016061 TTTTAAAAATACT
1 TTTTAAAAATACT
107016074 TTTTAAAAA
1 TTTTAAAAA
107016083 CATTGCTATA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
13 28 0.76
15 9 0.24
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (13 bp):
TTTTAAAAATACT
Found at i:107016978 original size:13 final size:13
Alignment explanation
Indices: 107016960--107016985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107016950 ATGAAATCCA
107016960 ATTCATATTTATT
1 ATTCATATTTATT
107016973 ATTCATATTTATT
1 ATTCATATTTATT
107016986 TTAAGTAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTCATATTTATT
Found at i:107021003 original size:26 final size:26
Alignment explanation
Indices: 107020967--107021026 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
107020957 GAAGCTATGG
*
107020967 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
107020993 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
107021019 AGAGCCAT
1 AGAGCCAT
107021027 ATATCGGAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:107021032 original size:26 final size:27
Alignment explanation
Indices: 107020952--107021041 Score: 82
Period size: 26 Copynumber: 3.5 Consensus size: 27
107020942 TGCGAGTCAT
* *
107020952 ATCGGGAAGCT-ATGGAGAGCCAT-TA
1 ATCGGGAAGCTCACGAAGAGCCATATA
** * *
107020977 ATTAGGAAGCTCACAAAGAGCC-TTTA
1 ATCGGGAAGCTCACGAAGAGCCATATA
107021003 ATCGGGAAGCTCACGAAGAGCCATAT-
1 ATCGGGAAGCTCACGAAGAGCCATATA
107021029 ATC-GGAACGCTCA
1 ATCGGGAA-GCTCA
107021042 TAAGAGTTGC
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
25 14 0.27
26 36 0.69
27 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (27 bp):
ATCGGGAAGCTCACGAAGAGCCATATA
Found at i:107035269 original size:26 final size:27
Alignment explanation
Indices: 107035219--107035269 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
107035209 AGAGATAGTA
107035219 GCATCTTGAATGGAAAGCAAGGATCAT
1 GCATCTTGAATGGAAAGCAAGGATCAT
*
107035246 GCATCTTGAATGG-AAGCATGGATC
1 GCATCTTGAATGGAAAGCAAGGATC
107035270 TTCTTTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (27 bp):
GCATCTTGAATGGAAAGCAAGGATCAT
Found at i:107036489 original size:27 final size:27
Alignment explanation
Indices: 107036426--107036490 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
107036416 GAATATAGTC
* *
107036426 AGATACAGGTTGGGCCTAAGCCCATTA
1 AGATACAGTTTGGGCCTAAGCCAATTA
* *
107036453 CAGATTCAGTTTGGGCCTTAGTCCAATT-
1 -AGATACAGTTTGGGCCTAAG-CCAATTA
107036481 AGATACAGTT
1 AGATACAGTT
107036491 GCAGATATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 9 0.29
28 17 0.55
29 5 0.16
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (27 bp):
AGATACAGTTTGGGCCTAAGCCAATTA
Found at i:107038282 original size:24 final size:24
Alignment explanation
Indices: 107038250--107038315 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
107038240 TTAACTTAAT
*
107038250 CGAACATGTTCACGAATAT-TAAAA
1 CGAACATGTTCACGAACATAT-AAA
*
107038274 CGAACATGTTCACGAACATATAAT
1 CGAACATGTTCACGAACATATAAA
*
107038298 TGAACATGTTCACGAACA
1 CGAACATGTTCACGAACA
107038316 ATGTTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (24 bp):
CGAACATGTTCACGAACATATAAA
Found at i:107047436 original size:33 final size:33
Alignment explanation
Indices: 107047398--107047521 Score: 230
Period size: 33 Copynumber: 3.8 Consensus size: 33
107047388 CTCTGTTTGA
107047398 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
107047431 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
107047464 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
107047497 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
107047522 CAAGAAGAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.18, C:0.10, G:0.43, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:107052572 original size:21 final size:23
Alignment explanation
Indices: 107052534--107052579 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
107052524 TGATTTATTA
*
107052534 ACTTTATAAATATCAAATAAAAT
1 ACTTTATAAAAATCAAATAAAAT
*
107052557 ACTTTA-AAAAAT-AAATATAAT
1 ACTTTATAAAAATCAAATAAAAT
107052578 AC
1 AC
107052580 AAATTAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 5 0.24
23 6 0.29
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (23 bp):
ACTTTATAAAAATCAAATAAAAT
Found at i:107053766 original size:25 final size:25
Alignment explanation
Indices: 107053723--107053775 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
107053713 TGATCCTCTA
**
107053723 ATTTCTTTTTAAAAATTAATTTTTT
1 ATTTCTTTTTAAAAATTAAACTTTT
***
107053748 ATTTCTTTTTAACCCTTAAACTTTT
1 ATTTCTTTTTAAAAATTAAACTTTT
107053773 ATT
1 ATT
107053776 ATTTATCAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTTCTTTTTAAAAATTAAACTTTT
Found at i:107053899 original size:37 final size:37
Alignment explanation
Indices: 107053845--107053922 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
107053835 ACAAATAACC
107053845 CAAA-ACCTATTCCAGTATAAATTTGAAATTGAAGAT
1 CAAATACCTATTCCAGTATAAATTTGAAATTGAAGAT
107053881 CAAATACCTATTCCAGTATAAATTTGAAATTGAAGAT
1 CAAATACCTATTCCAGTATAAATTTGAAATTGAAGAT
107053918 CAAAT
1 CAAAT
107053923 CCCAAAACCA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 4 0.10
37 37 0.90
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (37 bp):
CAAATACCTATTCCAGTATAAATTTGAAATTGAAGAT
Found at i:107058107 original size:21 final size:23
Alignment explanation
Indices: 107058069--107058114 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
107058059 TGATTTATTA
*
107058069 ACTTTATAAATATCAAATAAAAT
1 ACTTTATAAAAATCAAATAAAAT
*
107058092 ACTTTA-AAAAAT-AAATATAAT
1 ACTTTATAAAAATCAAATAAAAT
107058113 AC
1 AC
107058115 AAATTAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 5 0.24
23 6 0.29
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (23 bp):
ACTTTATAAAAATCAAATAAAAT
Found at i:107058763 original size:31 final size:30
Alignment explanation
Indices: 107058728--107058792 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
107058718 ATCAATCTAA
* ** *
107058728 GTATAAGAATACAAGTTCATGTACTAATTAG
1 GTATAAAAAT-CAAGTTCAACTACCAATTAG
*
107058759 GTATAAAAATGAAGTTCAACTACCAATTAG
1 GTATAAAAATCAAGTTCAACTACCAATTAG
107058789 GTAT
1 GTAT
107058793 TTTTAAAACA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (30 bp):
GTATAAAAATCAAGTTCAACTACCAATTAG
Found at i:107060216 original size:92 final size:92
Alignment explanation
Indices: 107060059--107060310 Score: 393
Period size: 92 Copynumber: 2.7 Consensus size: 92
107060049 TGATGCCATA
* * *
107060059 GTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTCTCTTTCAACCATGGT
1 GTGTCTTTCAACCATGGTCTTATTCA-TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGT
107060123 CTTATTCATTTCCCGTCATGTTG-CTATG
65 CTTATTCATTTCCCGTCATGTTGTC-ATG
* *
107060151 GTGTCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATGGAATCTTTCAACCATGGTC
1 GTGTCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTC
107060216 TTATTCATTTCCCGTCATGTTGTCATG
66 TTATTCATTTCCCGTCATGTTGTCATG
* *
107060243 GTATCTTTCAACCAT-GTCCTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGT
1 GTGTCTTTCAACCATGGT-CTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGT
107060307 CTTA
65 CTTA
107060311 CACATTTCAT
Statistics
Matches: 148, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
91 6 0.04
92 141 0.95
93 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.43
Consensus pattern (92 bp):
GTGTCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTC
TTATTCATTTCCCGTCATGTTGTCATG
Found at i:107060317 original size:46 final size:46
Alignment explanation
Indices: 107060047--107060320 Score: 354
Period size: 46 Copynumber: 6.0 Consensus size: 46
107060037 TTATCTTCGA
* * * * *
107060047 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* **
107060093 CATGTTGCCATGGTCTCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
107060139 CATGTTGCTATGGTGTCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
107060185 CATGTTGCCATGGAATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
107060231 CATGTTGTCATGGTATCTTTCAACCAT-GTCCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGT-CTTATTCATTTCATGT
* **
107060277 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
107060321 TTCAGAAAGC
Statistics
Matches: 200, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
45 6 0.03
46 192 0.96
47 2 0.01
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:107061754 original size:24 final size:21
Alignment explanation
Indices: 107061727--107061773 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
107061717 CCCTTATTTT
107061727 CTTTCTCTATACTATTTCTCATCA
1 CTTTCTCT-TA-T-TTTCTCATCA
*
107061751 CTTTCTCTTATTTTCTCTTCA
1 CTTTCTCTTATTTTCTCATCA
107061772 CT
1 CT
107061774 AACATATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 1 0.05
23 2 0.09
24 8 0.36
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.55
Consensus pattern (21 bp):
CTTTCTCTTATTTTCTCATCA
Found at i:107063487 original size:53 final size:53
Alignment explanation
Indices: 107063346--107063496 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
107063336 ATAAGTGCGC
* **
107063346 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
107063399 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
107063452 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
107063497 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:107065179 original size:30 final size:31
Alignment explanation
Indices: 107065111--107065169 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
107065101 CACCCTTAAA
** *
107065111 ATATTTACACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAACCCCTCAAATTTTTC
107065142 ATATTTACACT-TTAACCCCTCAAATTTT
1 ATATTTACACTATTAACCCCTCAAATTTT
107065170 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAAATTTTTC
Found at i:107065708 original size:12 final size:12
Alignment explanation
Indices: 107065691--107065715 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107065681 ACTGTATTTG
107065691 AAAATTAAACAA
1 AAAATTAAACAA
107065703 AAAATTAAACAA
1 AAAATTAAACAA
107065715 A
1 A
107065716 TTTCCAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATTAAACAA
Found at i:107067752 original size:25 final size:25
Alignment explanation
Indices: 107067724--107067771 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
107067714 CCCAACGTGA
107067724 ACTTTGACTTGAAATCAAGTTTAGC
1 ACTTTGACTTGAAATCAAGTTTAGC
107067749 ACTTTGACTTGAAATCAAGTTTA
1 ACTTTGACTTGAAATCAAGTTTA
107067772 ACTTTATGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (25 bp):
ACTTTGACTTGAAATCAAGTTTAGC
Found at i:107075306 original size:31 final size:29
Alignment explanation
Indices: 107075279--107075333 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
107075269 CTTTAATAGG
* *
107075279 TAAGTTAATTTAGCCTTTTTTACTT-A-A
1 TAAGTCAATTTAGCCCTTTTTACTTAATA
107075306 TAAGTCAATTTAGCCCTTTTTACTTAAT
1 TAAGTCAATTTAGCCCTTTTTACTTAAT
107075334 TTTGATGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (29 bp):
TAAGTCAATTTAGCCCTTTTTACTTAATA
Found at i:107076124 original size:10 final size:10
Alignment explanation
Indices: 107076109--107076133 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
107076099 TGAAAAGTGA
107076109 ATTGAATTGT
1 ATTGAATTGT
107076119 ATTGAATTGT
1 ATTGAATTGT
107076129 ATTGA
1 ATTGA
107076134 TTTATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (10 bp):
ATTGAATTGT
Found at i:107076364 original size:6 final size:6
Alignment explanation
Indices: 107076349--107076395 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
107076339 CTGTGTACCG
* * * *
107076349 TACTGC TACTGT TACTAT TACTGT TACCGT TACTGT TACCGT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG
107076396 ACACGGTGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (6 bp):
TACTGT
Found at i:107076540 original size:18 final size:18
Alignment explanation
Indices: 107076507--107076569 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
107076497 TAAATAAAGG
* *
107076507 TACTGAA-AATTGACTGC
1 TACTGAATAATTAACTGT
107076524 TACTGAATAATTAACTGT
1 TACTGAATAATTAACTGT
**
107076542 TACTGAATAAACAACTGT
1 TACTGAATAATTAACTGT
107076560 TACTGAATAA
1 TACTGAATAA
107076570 ATGGTTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
17 7 0.17
18 34 0.83
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (18 bp):
TACTGAATAATTAACTGT
Found at i:107076580 original size:18 final size:18
Alignment explanation
Indices: 107076559--107076597 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
107076549 TAAACAACTG
*
107076559 TTACTGAATAAATGGTTA
1 TTACTGAATAAATGATTA
* *
107076577 TTACTGATTAACTGATTA
1 TTACTGAATAAATGATTA
107076595 TTA
1 TTA
107076598 TTGTTGACTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.44
Consensus pattern (18 bp):
TTACTGAATAAATGATTA
Found at i:107095459 original size:6 final size:6
Alignment explanation
Indices: 107095434--107095516 Score: 51
Period size: 6 Copynumber: 12.8 Consensus size: 6
107095424 AGTGTGAAAG
***
107095434 AAAGCAA AAAGAGA ATAAGAA AAAGAA AAATGAA CTTGAA AAAGAA AGTGAA-AA
1 AAAG-AA AAAGA-A A-AAGAA AAAGAA AAA-GAA AAAGAA AAAGAA A---AAGAA
* *
107095488 AAAGAA AAAGAG AAGGAA AAAGAA AAAGA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGA
107095517 GATCGAGAGT
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
5 2 0.03
6 37 0.63
7 11 0.19
8 7 0.12
9 2 0.03
ACGTcount: A:0.71, C:0.02, G:0.20, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:107095563 original size:18 final size:18
Alignment explanation
Indices: 107095452--107095565 Score: 62
Period size: 18 Copynumber: 6.6 Consensus size: 18
107095442 AAGAGAATAA
*
107095452 GAAAAAGAAAAATGAACTT
1 GAAAAAGAAAAA-GAAATT
**
107095471 GAAAAAGAAAGTG-AA--
1 GAAAAAGAAAAAGAAATT
*
107095486 -AAAAAGAAAAAGAGAA-G
1 GAAAAAGAAAAAGA-AATT
* *
107095503 GAAAAAGAAAAAGAGATC
1 GAAAAAGAAAAAGAAATT
* **
107095521 GAGAGTGAAAAAG-AATGT
1 GAAAAAGAAAAAGAAAT-T
*
107095539 G-AGAAGAAAAAGAAATT
1 GAAAAAGAAAAAGAAATT
107095556 GAAAAAGAAA
1 GAAAAAGAAA
107095566 GAGAGTTTAA
Statistics
Matches: 70, Mismatches: 17, Indels: 17
0.67 0.16 0.16
Matches are distributed among these distances:
14 10 0.14
16 2 0.03
17 13 0.19
18 35 0.50
19 10 0.14
ACGTcount: A:0.66, C:0.02, G:0.24, T:0.09
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAATT
Found at i:107101671 original size:24 final size:24
Alignment explanation
Indices: 107101620--107101665 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
107101610 AAGTAACACA
107101620 TGTATGGTAAAAAGTAAATACAAG
1 TGTATGGTAAAAAGTAAATACAAG
* *
107101644 TGTATGGTAACAATTAAATACA
1 TGTATGGTAAAAAGTAAATACA
107101666 TTTGTACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (24 bp):
TGTATGGTAAAAAGTAAATACAAG
Found at i:107102735 original size:26 final size:27
Alignment explanation
Indices: 107102687--107102738 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
107102677 AATATATGAA
107102687 TGATTGAAATGTGTATTGAATTGGAAT
1 TGATTGAAATGTGTATTGAATTGGAAT
*
107102714 TGATTGAAACTG-GTATT-CATTGGAA
1 TGATTGAAA-TGTGTATTGAATTGGAA
107102739 ATAAAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 14 0.61
28 2 0.09
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (27 bp):
TGATTGAAATGTGTATTGAATTGGAAT
Found at i:107105617 original size:42 final size:43
Alignment explanation
Indices: 107105517--107105652 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 43
107105507 AGCTCGTACA
* ***
107105517 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATACCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACAAAATCAAATACCG
* * *
107105560 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCATAT-GCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACAAAATCAAATACCG
* * *
107105602 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACAC-AAAATCA-AATACCG
107105646 ATGCCAA
1 ATGCCAA
107105653 CCTCTCAGAC
Statistics
Matches: 77, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
42 29 0.38
43 37 0.48
44 11 0.14
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACAAAATCAAATACCG
Found at i:107108700 original size:19 final size:20
Alignment explanation
Indices: 107108676--107108716 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
107108666 TGTGAAATGC
* *
107108676 TATTG-AATAGCAATTATGA
1 TATTGAAATAGAAAATATGA
107108695 TATTGAAATAGAAAATATGA
1 TATTGAAATAGAAAATATGA
107108715 TA
1 TA
107108717 ATTGGAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.49, C:0.02, G:0.15, T:0.34
Consensus pattern (20 bp):
TATTGAAATAGAAAATATGA
Found at i:107112353 original size:19 final size:19
Alignment explanation
Indices: 107112329--107112367 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
107112319 CAATAATTAC
*
107112329 TTAAAATAAATACCAACAA
1 TTAAAATAAATACAAACAA
*
107112348 TTAAAATATATACAAACAA
1 TTAAAATAAATACAAACAA
107112367 T
1 T
107112368 ATTTACTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.26
Consensus pattern (19 bp):
TTAAAATAAATACAAACAA
Found at i:107112418 original size:25 final size:25
Alignment explanation
Indices: 107112390--107112439 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
107112380 AAGTGTGAAC
107112390 TATTAAATATCATCAATATTACTTA
1 TATTAAATATCATCAATATTACTTA
*
107112415 TATTAAATATTATCAATATTACTTA
1 TATTAAATATCATCAATATTACTTA
107112440 CTCTGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (25 bp):
TATTAAATATCATCAATATTACTTA
Found at i:107126259 original size:2 final size:2
Alignment explanation
Indices: 107126252--107126284 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
107126242 TTACCAGATG
107126252 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107126285 ATTTCTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107134547 original size:16 final size:16
Alignment explanation
Indices: 107134526--107134558 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107134516 ATATACAATT
107134526 ATCTCC-CTCCAATACC
1 ATCTCCACTCCAA-ACC
107134542 ATCTCCACTCCAAACC
1 ATCTCCACTCCAAACC
107134558 A
1 A
107134559 CCATCATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.30, C:0.48, G:0.00, T:0.21
Consensus pattern (16 bp):
ATCTCCACTCCAAACC
Found at i:107143675 original size:22 final size:22
Alignment explanation
Indices: 107143650--107143693 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
107143640 CTTGGAGGTT
**
107143650 GCAACATTGAACCCCTGTTGTC
1 GCAACATCAAACCCCTGTTGTC
*
107143672 GCAATATCAAACCCCTGTTGTC
1 GCAACATCAAACCCCTGTTGTC
107143694 ATGACATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (22 bp):
GCAACATCAAACCCCTGTTGTC
Found at i:107143702 original size:22 final size:22
Alignment explanation
Indices: 107143659--107143703 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
107143649 TGCAACATTG
* *
107143659 AACCCCTGTTGTCGCAATATCA
1 AACCCCTGTTGTCACAACATCA
**
107143681 AACCCCTGTTGTCATGACATCA
1 AACCCCTGTTGTCACAACATCA
107143703 A
1 A
107143704 CTTGAAATCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (22 bp):
AACCCCTGTTGTCACAACATCA
Found at i:107147570 original size:2 final size:2
Alignment explanation
Indices: 107147565--107147601 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
107147555 ATGAAATGAA
107147565 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107147602 AATGCAATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.