Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 37 of 427
Found at i:9256593 original size:26 final size:26
Alignment explanation
Indices: 9256552--9256635 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
9256542 CATGAATTTC
*
9256552 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGGAACATTTACCTAAACCA
* *
9256578 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGGAACATTTACCTAAACCA
*
9256604 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAAACCA
9256630 TTATCA
1 TTATCA
9256636 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAAACCA
Found at i:9257836 original size:25 final size:27
Alignment explanation
Indices: 9257799--9257851 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
9257789 TCAAACATGC
9257799 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
9257825 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
9257851 A
1 A
9257852 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:9259461 original size:25 final size:26
Alignment explanation
Indices: 9259335--9259494 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
9259325 CATGAAATTC
* *
9259335 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
* *
9259361 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
9259387 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
9259413 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
9259439 TTATCATGGAACA-TTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
9259464 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
9259489 TTATCA
1 TTATCA
9259495 ATTTGTATCA
Statistics
Matches: 131, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
24 5 0.04
25 37 0.28
26 89 0.68
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:9259954 original size:286 final size:286
Alignment explanation
Indices: 9259540--9260109 Score: 1007
Period size: 286 Copynumber: 2.0 Consensus size: 286
9259530 AAGTGTCATT
*
9259540 TTGTCTACAACAACATGATGGCTGGCCACTTCATGTAAAATGGAGGTTTGTCATGCAAATCCTCC
1 TTGTCTACAACAACATGATGGCTAGCCACTTCATGTAAAATGGAGGTTTGTCATGCAAATCCTCC
9259605 TATTTTGCACTCCTATTTATTTGGCCACTTCAATTTAGCCTATAGCATTTTCAAACATTTTCACA
66 TATTTTGCACTCCTATTTATTTGGCCACTTCAATTTAGCCTATAGCATTTTCAAACATTTTCACA
* **
9259670 TAGGTCCTATTTCATAATTTCACCCCCTTTTTCTTATGGAACAAAAATTAACTAAAATTGTCGGG
131 TAAGTCCTATTTCATAATTTCACCCCCTTTTTCTTATGGAACAAAAATTAACTAAAATTACCGGG
* * *
9259735 TTCTATCTTAAGTTTGGGCTTTCTAGAGGCCCACTAACATAATTAAACCTATGCCAACATTCACA
196 TTCTATCTTAAGCTTGGGCCTTCTAGAGGCCCACAAACATAATTAAACCTATGCCAACATTCACA
* *
9259800 GGATTCCCGAAAATTGGGGCGTTACA
261 GAATTCCCAAAAATTGGGGCGTTACA
9259826 TTGTCTACAACAACATGATGGCTAGCCACTTCATGTAAAATGGGAGGTTTGTCATGCAAATCCTC
1 TTGTCTACAACAACATGATGGCTAGCCACTTCATGTAAAAT-GGAGGTTTGTCATGCAAATCCTC
*
9259891 CTATTTTGCACTCCTATTTATTTGGCCACTTCAATTT-GCCTATAGTATTTTCAAACATTTTCAC
65 CTATTTTGCACTCCTATTTATTTGGCCACTTCAATTTAGCCTATAGCATTTTCAAACATTTTCAC
* *
9259955 ATAAGTCCTATTTCATAATTTCACTCCCTTTTTCTTATGGAACAAAAATTAACTAAAATTACCTG
130 ATAAGTCCTATTTCATAATTTCACCCCCTTTTTCTTATGGAACAAAAATTAACTAAAATTACCGG
*
9260020 GTTCTATCTTAAGCTTGGGCCTTCTAGAGGCCCACAAACATAATTAAACCTATGCCAACATTTAC
195 GTTCTATCTTAAGCTTGGGCCTTCTAGAGGCCCACAAACATAATTAAACCTATGCCAACATTCAC
9260085 AGAATTCCCAAAAATTGGGGCGTTA
260 AGAATTCCCAAAAATTGGGGCGTTA
9260110 TAGATATAAT
Statistics
Matches: 270, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
286 210 0.78
287 60 0.22
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (286 bp):
TTGTCTACAACAACATGATGGCTAGCCACTTCATGTAAAATGGAGGTTTGTCATGCAAATCCTCC
TATTTTGCACTCCTATTTATTTGGCCACTTCAATTTAGCCTATAGCATTTTCAAACATTTTCACA
TAAGTCCTATTTCATAATTTCACCCCCTTTTTCTTATGGAACAAAAATTAACTAAAATTACCGGG
TTCTATCTTAAGCTTGGGCCTTCTAGAGGCCCACAAACATAATTAAACCTATGCCAACATTCACA
GAATTCCCAAAAATTGGGGCGTTACA
Found at i:9260213 original size:64 final size:64
Alignment explanation
Indices: 9260107--9260313 Score: 378
Period size: 64 Copynumber: 3.2 Consensus size: 64
9260097 AATTGGGGCG
*
9260107 TTATAGATATAATATGTCTCATCTAATATACAAATATTTCTATCACAATTTTTAATAAATTTAT
1 TTATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACAATTTTTAATAAATTTAT
*
9260171 TTATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACGATTTTTAATAAATTTAT
1 TTATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACAATTTTTAATAAATTTAT
*
9260235 TTATTGATATAATATGTCCCATCTAATATACAAATATTTCTATCACAATTTTTAATAAATTTAT
1 TTATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACAATTTTTAATAAATTTAT
*
9260299 TTATTAATATAATAT
1 TTATTGATATAATAT
9260314 CAATAAAATC
Statistics
Matches: 138, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 138 1.00
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (64 bp):
TTATTGATATAATATGTCTCATCTAATATACAAATATTTCTATCACAATTTTTAATAAATTTAT
Found at i:9261500 original size:9 final size:9
Alignment explanation
Indices: 9261472--9261599 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
9261462 ATTGATAATT
*
9261472 ACTTAAATA
1 ACTTACATA
* *
9261481 AATTACGTA
1 ACTTACATA
9261490 ACTTACATA
1 ACTTACATA
*
9261499 ACTCACATA
1 ACTTACATA
9261508 ACTTACATA
1 ACTTACATA
*
9261517 ATTTACATAACA
1 ACTTACAT---A
9261529 ACTTACATA
1 ACTTACATA
*
9261538 ACTCACATA
1 ACTTACATA
9261547 ACTTACATA
1 ACTTACATA
*
9261556 ATTTACATA
1 ACTTACATA
*
9261565 ACTCACATA
1 ACTTACATA
*
9261574 ACGTACATAACA
1 ACTTACAT---A
9261586 ACTTACATA
1 ACTTACATA
9261595 ACTTA
1 ACTTA
9261600 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (9 bp):
ACTTACATA
Found at i:9261532 original size:39 final size:39
Alignment explanation
Indices: 9261489--9261566 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
9261479 TAAATTACGT
9261489 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
9261528 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
9261567 TCACATAACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:9261564 original size:57 final size:57
Alignment explanation
Indices: 9261488--9261597 Score: 175
Period size: 57 Copynumber: 1.9 Consensus size: 57
9261478 ATAAATTACG
* **
9261488 TAACTTACATAACTCACATAACTTACATAATTTACATAACAACTTACATAACTCACA
1 TAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTCACA
* *
9261545 TAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 TAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
9261598 TAACTAATAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (57 bp):
TAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTCACA
Found at i:9261595 original size:39 final size:37
Alignment explanation
Indices: 9261472--9261584 Score: 133
Period size: 39 Copynumber: 3.1 Consensus size: 37
9261462 ATTGATAATT
* * * *
9261472 ACTTAAATAAATTACGT-AACTTACATAACTCACATA
1 ACTTACATAATTTACATAAACTCACATAACTCACATA
*
9261508 ACTTACATAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTCACATAACTCACATA
9261547 ACTTACATAATTTACAT-AACTCACATAACGT-ACATA
1 ACTTACATAATTTACATAAACTCACATAAC-TCACATA
9261583 AC
1 AC
9261585 AACTTACATA
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
36 32 0.46
37 1 0.01
39 36 0.52
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (37 bp):
ACTTACATAATTTACATAAACTCACATAACTCACATA
Found at i:9267548 original size:32 final size:31
Alignment explanation
Indices: 9267465--9267549 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 31
9267455 TTTAGAATTA
* *
9267465 TTGTTTTTGGTTGTATTTTTTATGCTAAATTTG
1 TTGTTTTTGGTTGCA--TTTTATACTAAATTTG
* * *
9267498 ATGTTTTTGGCTGCATTTTATACTATATTTG
1 TTGTTTTTGGTTGCATTTTATACTAAATTTG
*
9267529 TTGTATTTTGGTTGGATTTTA
1 TTGT-TTTTGGTTGCATTTTA
9267550 ATGCAGGAAG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
31 17 0.40
32 14 0.33
33 12 0.28
ACGTcount: A:0.16, C:0.05, G:0.19, T:0.60
Consensus pattern (31 bp):
TTGTTTTTGGTTGCATTTTATACTAAATTTG
Found at i:9267675 original size:43 final size:42
Alignment explanation
Indices: 9267628--9267961 Score: 323
Period size: 43 Copynumber: 7.7 Consensus size: 42
9267618 GAAAAAGCGT
*
9267628 CGTTAAAAGTCACGT-CTTTTAGCGGCACTTTTCCCACAAACGC
1 CGTTAAAAG--ACGTACTTTTAGCGGCGCTTTTCCCACAAACGC
* *
9267671 CGTTAAAAGACATGACTTTTAGCTGCGCTTTTCCCACAAACGC
1 CGTTAAAAGACGT-ACTTTTAGCGGCGCTTTTCCCACAAACGC
* * * * *
9267714 CGCTAAAAGACGTGACTTTTACCGACGCTTTTACCACAAACAC
1 CGTTAAAAGACGT-ACTTTTAGCGGCGCTTTTCCCACAAACGC
* * *
9267757 CGTTAAAAATACGTAACTTTTAGCGGCGCTTTTACCAAAAACGC
1 CGTT-AAAAGACGT-ACTTTTAGCGGCGCTTTTCCCACAAACGC
* *
9267801 CGCTAAAAGATGTGACTTTTAGCGGCGCTTTTCCCACAAACGC
1 CGTTAAAAGACGT-ACTTTTAGCGGCGCTTTTCCCACAAACGC
* *
9267844 CGTTAAAAAGACGTGACTTTTAGTGGCGCTTTTTCCAC-AACGC
1 CGTT-AAAAGACGT-ACTTTTAGCGGCGCTTTTCCCACAAACGC
* * * *
9267887 CGCTAAAAGTCACG-GCTTTTAGCGACGCTTTTCCCACAAACGT
1 CGTTAAAAG--ACGTACTTTTAGCGGCGCTTTTCCCACAAACGC
* * * * *
9267930 TGCTAAAAGCCGTGACTTTTAGCAGCGTTTTT
1 CGTTAAAAGACGT-ACTTTTAGCGGCGCTTTT
9267962 TTCAATAAAC
Statistics
Matches: 243, Mismatches: 39, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
41 5 0.02
42 24 0.10
43 145 0.60
44 69 0.28
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (42 bp):
CGTTAAAAGACGTACTTTTAGCGGCGCTTTTCCCACAAACGC
Found at i:9267964 original size:86 final size:86
Alignment explanation
Indices: 9267643--9267962 Score: 387
Period size: 87 Copynumber: 3.7 Consensus size: 86
9267633 AAAGTCACGT
* * * * *
9267643 CTTTTAGCGGCACTTTTCCCACAAACGCCGTT-AAAAGACATGACTTTTAGCTGCGCTTTTCCCA
1 CTTTTAGCGACGCTTTTCCCACAAACGCCGTTAAAAAGACGTGACTTTTAGCGGCGCTTTTTCCA
9267707 CAAACGCCGCTAAAAGACGTGA
66 C-AACGCCGCTAAAAGACGTGA
* * * * * *
9267729 CTTTTACCGACGCTTTTACCACAAACACCGTTAAAAATACGTAACTTTTAGCGGCGCTTTTACCA
1 CTTTTAGCGACGCTTTTCCCACAAACGCCGTTAAAAAGACGTGACTTTTAGCGGCGCTTTTTCC-
* *
9267794 AAAACGCCGCTAAAAGATGTGA
65 ACAACGCCGCTAAAAGACGTGA
* *
9267816 CTTTTAGCGGCGCTTTTCCCACAAACGCCGTTAAAAAGACGTGACTTTTAGTGGCGCTTTTTCCA
1 CTTTTAGCGACGCTTTTCCCACAAACGCCGTTAAAAAGACGTGACTTTTAGCGGCGCTTTTTCCA
9267881 CAACGCCGCTAAAAGTCACG-G-
66 CAACGCCGCTAAAAG--ACGTGA
** * * * *
9267902 CTTTTAGCGACGCTTTTCCCACAAACGTTGCT-AAAAGCCGTGACTTTTAGCAGCGTTTTTT
1 CTTTTAGCGACGCTTTTCCCACAAACGCCGTTAAAAAGACGTGACTTTTAGCGGCGCTTTTT
9267963 TCAATAAACG
Statistics
Matches: 200, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
85 25 0.12
86 70 0.35
87 102 0.51
88 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (86 bp):
CTTTTAGCGACGCTTTTCCCACAAACGCCGTTAAAAAGACGTGACTTTTAGCGGCGCTTTTTCCA
CAACGCCGCTAAAAGACGTGA
Found at i:9270869 original size:21 final size:21
Alignment explanation
Indices: 9270840--9270879 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9270830 AATTCTGTTT
* *
9270840 ATTTTTACAATTTCAATTTCA
1 ATTTATACAATATCAATTTCA
9270861 ATTTATACAATATCAATTT
1 ATTTATACAATATCAATTT
9270880 GTCCATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTATACAATATCAATTTCA
Found at i:9272178 original size:21 final size:22
Alignment explanation
Indices: 9272122--9272182 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 22
9272112 TTCCATTGAG
**
9272122 TTCTTTAAAATTCATGTTTTTATA
1 TTCTTT-AAATTCAT-TCATTATA
9272146 TTCTTTATAATTCATTCATTAT-
1 TTCTTTA-AATTCATTCATTATA
9272168 TTCTTTAAATTCATT
1 TTCTTTAAATTCATT
9272183 TAGCATTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 8 0.24
22 7 0.21
23 6 0.18
24 13 0.38
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (22 bp):
TTCTTTAAATTCATTCATTATA
Found at i:9273253 original size:125 final size:125
Alignment explanation
Indices: 9273029--9273324 Score: 441
Period size: 125 Copynumber: 2.4 Consensus size: 125
9273019 ATCTTTCATG
* * * * *
9273029 TTTGGAAGTTTGAGAGATCGTGCCCAATCGTGCTGAGTTTCGATTTTTCATTCGACTAAAATATA
1 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATAGA
* * ** *
9273094 GAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAGCAAGGCAATATTTCGTA
66 GAATATCCTTTTGAAATTTCATCCACATTCTCTTAAATTAAAACAAGGCAATATTTCGTA
*
9273154 TTTGGAAGTTCGATAAATCGTGTCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATACG
1 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATA-G
* * *
9273219 A-AATATCCTTTTGGAATTTCATCCACATTTTCTTAAATTAAAATAAGGCAATATTTCGTA
65 AGAATATCCTTTTGAAATTTCATCCACATTCTCTTAAATTAAAACAAGGCAATATTTCGTA
*
9273279 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCAATTT
1 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
9273325 ACCGTTTGGC
Statistics
Matches: 154, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 153 0.99
126 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (125 bp):
TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATAGA
GAATATCCTTTTGAAATTTCATCCACATTCTCTTAAATTAAAACAAGGCAATATTTCGTA
Found at i:9273348 original size:125 final size:125
Alignment explanation
Indices: 9273029--9273365 Score: 408
Period size: 125 Copynumber: 2.7 Consensus size: 125
9273019 ATCTTTCATG
* * * * * ** *
9273029 TTTGGAAGTTTGAGAGATCGTGCCCAATCGTGCTGAGTTTCGATTTTTCATTCGACTAAAATA-T
1 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCAATTTACCATTCGACTAAAATACC
* * ** *
9273093 AGAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAGCAAGGCAATATTTCGTA
66 A-AATATCCTTTTGAAATTTCATCCACATTCTCTTAAATTAAAACAAGGCAATATTTCGTA
* * ** *
9273154 TTTGGAAGTTCGATAAATCGTGTCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATACG
1 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCAATTTACCATTCGACTAAAATACC
* * *
9273219 AAATATCCTTTTGGAATTTCATCCACATTTTCTTAAATTAAAATAAGGCAATATTTCGTA
66 AAATATCCTTTTGAAATTTCATCCACATTCTCTTAAATTAAAACAAGGCAATATTTCGTA
* * * *
9273279 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCAATTTACCGTTTGGC-CAAATAGC
1 TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCAATTTACCATTCGACTAAAATA-C
9273343 CAAATATCCTTTTTGAAATTTCA
65 CAAATATCC-TTTTGAAATTTCA
9273366 AATGTATGAG
Statistics
Matches: 185, Mismatches: 24, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
124 5 0.03
125 167 0.90
126 13 0.07
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (125 bp):
TTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCAATTTACCATTCGACTAAAATACC
AAATATCCTTTTGAAATTTCATCCACATTCTCTTAAATTAAAACAAGGCAATATTTCGTA
Found at i:9275850 original size:18 final size:17
Alignment explanation
Indices: 9275808--9275855 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
9275798 GTTTTTTTCA
9275808 TAAATATTTTTAAAAAAT
1 TAAAT-TTTTTAAAAAAT
*
9275826 AATAATTTTTTAAAAAATT
1 TA-AATTTTTTAAAAAA-T
9275845 TAAATTATTTT
1 TAAATT-TTTT
9275856 CTCTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAATTTTTTAAAAAAT
Found at i:9276734 original size:37 final size:38
Alignment explanation
Indices: 9276634--9276735 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
9276624 ATATATTTGG
9276634 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
9276670 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
9276712 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
9276736 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:9277019 original size:39 final size:37
Alignment explanation
Indices: 9276922--9277019 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
9276912 TATGGTATTT
* * * *
9276922 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
9276958 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
9276997 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
9277020 AATACCTAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:9277545 original size:26 final size:27
Alignment explanation
Indices: 9277516--9277568 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
9277506 TTTTTTTGGG
9277516 GGGGGGTTAGGTTTTTTCT-TTTTTTT
1 GGGGGGTTAGGTTTTTTCTCTTTTTTT
9277542 GGGGGGTTAGGTTTTTTCTCTTTTTTT
1 GGGGGGTTAGGTTTTTTCTCTTTTTTT
9277569 TTTGGTTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.04, C:0.06, G:0.30, T:0.60
Consensus pattern (27 bp):
GGGGGGTTAGGTTTTTTCTCTTTTTTT
Found at i:9278327 original size:30 final size:30
Alignment explanation
Indices: 9278291--9278352 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
9278281 TTTTGAAAAA
9278291 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
9278321 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
9278351 CA
1 CA
9278353 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:9278675 original size:75 final size:78
Alignment explanation
Indices: 9278499--9280541 Score: 458
Period size: 75 Copynumber: 25.5 Consensus size: 78
9278489 ATGTGACCCG
* * * *
9278499 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACCAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAGACAAATTGAAAAATACCAC
* * * *
9278564 AGTGTGTGATCTGA
65 AGCGCGTGAGCTCA
* *
9278578 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAGACAAATTG-AAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
9278640 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
* *
9278652 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAG-ACAAATTG---AA---
** ** * *
9278717 AAATTGAAATTACCTCGGCGTGTGAC-CTG
56 AAA-T---ACCACAGC-GCGTGAG-CTC-A
* * * * * * * *
9278746 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTG-AAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
** *
9278810 --GCGTGTCCT-G
66 GCGCGTGAGCTCA
* * *
9278820 AGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAG-ACAAATTG---AA---
** ** * *
9278885 AAATTGAAATTACCTCGGCGTGTGAC-CTG
56 AAA-T---ACCACAGC-GCGTGAG-CTC-A
* * * * * * * *
9278914 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTG-AAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
** *
9278978 --GCGTGTCCT-G
66 GCGCGTGAGCTCA
* * * *
9278988 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTG-AAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAGACAAATTGAAAAATACCAC
* * **
9279052 A--GCATG-TCTTG
65 AGCGCGTGAGCTCA
** * * * * *
9279063 AGGCTCAACTCATTTCTCACAATATGAGTTGA--------AAAACAGAAATTG-AAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
*
9279119 GCGTGTGAGC-CA
66 GCGCGTGAGCTCA
* * **
9279131 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAG-CAGATTTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TT-----TT-T-TTGAAAAGACA-AATTGA
* *** *
9279195 AAAATACCTC-GATATGTGA-CTGA
55 AAAATACCACAG-CGCGTGAGCTCA
* *
9279218 AGGTTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGAAAA-ACAGAAATT-AAAAGACTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGAC--AAATTGAAAA-A-T--
** * ** *
9279279 ACTCAACTCTCGCAG-AAATTAAA
60 AC-C-AC-AGCGC-GTGAGCT-CA
* * *
9279302 AAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAACAGAAATTG-AAAATAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG-AAAAGAC--AAATTGAAAAATAC
* *
9279366 CTCAGCACGTGAG-TCA
62 CACAGCGCGTGAGCTCA
* * * *
9279382 AGGCTCAACTCACATCTCGCAATGTGAGTTGA-TTTTTTGAAAAATATAAATTGAAAAAATACCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAGACAAATTG-AAAAATACCA
* * * *
9279446 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
* *
9279461 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTG-AAAGACAAATTG-AAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGACAAATTGAAAAATACCAC
9279523 AGCGCGTGAGC-CA
65 AGCGCGTGAGCTCA
* *
9279536 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAG-ACAAATTG---AA---A
** ** * *
9279601 AATTGAAATTACCTCGGCGTGTGAC-CTG
57 AA-T---ACCACAGC-GCGTGAG-CTC-A
* * * * * * * *
9279629 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTG-AAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
** *
9279693 --GCGTGTCCT-G
66 GCGCGTGAGCTCA
* *
9279703 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGAAAAAATTGAAAAACGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAG-ACAAATTG---AA---A
** ** * *
9279768 AATTGAAATTACCTCGGCGTGTGAC-CTG
57 AA-T---ACCACAGC-GCGTGAG-CTC-A
* * * * * * * *
9279796 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTG-AAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
** *
9279860 --GCGTGTCCT-G
66 GCGCGTGAGCTCA
* * * *
9279870 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTG-AAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAGACAAATTGAAAAATACCAC
* * **
9279934 A--GCATG-TCTTG
65 AGCGCGTGAGCTCA
** * * * * *
9279945 AGGCTCAACTCATTTCTCACAATATGAGTTGA--------AAAACAGAAATTG-AAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
*
9280001 GCGTGTGAGC-CA
66 GCGCGTGAGCTCA
* * **
9280013 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAG-CAGATTTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TT-----TT-T-TTGAAAAGACA-AATTGA
* **** *
9280077 AAAATACCTCAATATGTGA-CTGA
55 AAAATACCACAGCGCGTGAGCTCA
* *
9280100 AGGTTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGAAAA-ACAGAAATT-AAAAGACTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGAC--AAATTGAAAA-A-T-A
* * * * * * *
9280161 ACTCAACTCTTGCAGAAATTAAA
61 CCACAGCGCGTG-AG---CT-CA
* *
9280184 AAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAATTG-AAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG--AAAAGAC--AAATTGAAAAATA
* * *
9280248 GCTCAGCACGTGAGC-CA
61 CCACAGCGCGTGAGCTCA
* *
9280265 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-CAAA-ACAGAATCTGAAAAATAGAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACA-AAT-TG--AAA-A-A-
** ** * * * *
9280326 TTTGAAAATACCTCGACATGTGACCCG
59 --T---ACCACAGCG-CGTGAG-CTCA
* * * *
9280353 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAGACAAATTGAAAAATACCAC
* * *
9280418 AGTGTGTGAGCTGA
65 AGCGCGTGAGCTCA
* *
9280432 A-GCTCAACTCACCTCTCGC-ATATGAGTTGA-TTTTTTG-AAAGACAGAAATTG-AAAATAGCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGAC--AAATTGAAAAATACCA
9280492 CAGCGCGTGAGC-CA
64 CAGCGCGTGAGCTCA
*
9280506 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
9280542 GAAAAAGTAG
Statistics
Matches: 1490, Mismatches: 267, Indels: 416
0.69 0.12 0.19
Matches are distributed among these distances:
66 44 0.03
68 64 0.04
69 2 0.00
72 1 0.00
73 3 0.00
74 151 0.10
75 221 0.15
76 129 0.09
77 50 0.03
78 151 0.10
79 29 0.02
80 48 0.03
81 37 0.02
82 10 0.01
83 13 0.01
84 63 0.04
85 11 0.01
86 29 0.02
87 119 0.08
88 42 0.03
89 22 0.01
90 51 0.03
91 57 0.04
92 21 0.01
93 64 0.04
94 58 0.04
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGACAAATTGAAAAATACCACA
GCGCGTGAGCTCA
Found at i:9278843 original size:74 final size:75
Alignment explanation
Indices: 9278716--9278858 Score: 225
Period size: 74 Copynumber: 1.9 Consensus size: 75
9278706 TTGAAAAACG
* * *
9278716 GAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTT
1 GAAATTGAAATTACCTCAGCGTGT-ACCTGAGGCTCAAATCACCTCTCACAATACGAGTTGATTT
9278781 TTTTGACAACA
65 TTTTGACAACA
* *
9278792 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAATTACCTCAGCGTGTACCTGAGGCTCAAATCACCTCTCACAATACGAGTTGATTTT
9278856 TTT
66 TTT
9278859 TTTGAAAGGC
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 39 0.63
76 23 0.37
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAATTACCTCAGCGTGTACCTGAGGCTCAAATCACCTCTCACAATACGAGTTGATTTT
TTTGACAACA
Found at i:9278853 original size:168 final size:168
Alignment explanation
Indices: 9278567--9279026 Score: 771
Period size: 168 Copynumber: 2.7 Consensus size: 168
9278557 ATACCACAGT
* * * * * * *
9278567 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
* * * *
9278631 AATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
66 ATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
9278695 AAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGC
128 AAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGC
9278736 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
*
9278801 ATTACCTCAGCGTGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAA
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAA
9278866 GGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGC
131 GGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGC
9278904 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
9278969 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
9279027 GTAAAACAGA
Statistics
Matches: 276, Mismatches: 13, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
167 2 0.01
168 210 0.76
169 46 0.17
170 18 0.07
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (168 bp):
GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAA
GGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGC
Found at i:9278858 original size:76 final size:76
Alignment explanation
Indices: 9278716--9278879 Score: 217
Period size: 74 Copynumber: 2.1 Consensus size: 76
9278706 TTGAAAAACG
* * *
9278716 GAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGA-TT
1 GAAATTGAAATTACCTCAGCGTGT-ACCTGAGGCTCAAATCACCTCTCACAATACGAGTTGATTT
9278780 TTTTTGACAA-CA
65 TTTTTGA-AAGCA
* *
9278792 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAATTACCTCAGCGTGTACCTGAGGCTCAAATCACCTCTCACAATACGAGTTGA--TT
9278856 TTTTTTGAAAGGCA
64 TTTTTTGAAA-GCA
9278870 GAAATTGAAA
1 GAAATTGAAA
9278880 AACGGAAATT
Statistics
Matches: 78, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
74 32 0.41
76 25 0.32
77 9 0.12
78 12 0.15
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (76 bp):
GAAATTGAAATTACCTCAGCGTGTACCTGAGGCTCAAATCACCTCTCACAATACGAGTTGATTTT
TTTTGAAAGCA
Found at i:9279297 original size:30 final size:30
Alignment explanation
Indices: 9279261--9279322 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
9279251 TTTTGAAAAA
9279261 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
9279291 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
9279321 CA
1 CA
9279323 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:9279574 original size:78 final size:76
Alignment explanation
Indices: 9279304--9279573 Score: 326
Period size: 78 Copynumber: 3.5 Consensus size: 76
9279294 AAATTAAAAA
*
9279304 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAACAGAAATTGAAAATAGCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTGAAAAAGAC--AAATTGAAAATAGCTC
* *
9279369 AGCACGTGAGTCAAG
62 AGCGCGTGAGCCAAG
* * * * * *
9279384 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTGAAAAATATAAATTGAAAAAATACCACAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAGACAAATTG--AAAATAGCTCAG
* * * *
9279449 TGTGTGATCTGAA-
64 CGCGTGAGC-CAAG
***
9279462 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAAATTGAAAATAGCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAGACAAATTGAAAATAGCTCAGCG
9279527 CGTGAGCCAAG
66 CGTGAGCCAAG
9279538 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
9279574 TTTGAAAGGC
Statistics
Matches: 161, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
75 2 0.01
76 58 0.36
78 71 0.44
79 3 0.02
80 27 0.17
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAGACAAATTGAAAATAGCTCAGCG
CGTGAGCCAAG
Found at i:9279741 original size:167 final size:167
Alignment explanation
Indices: 9279450--9279908 Score: 751
Period size: 167 Copynumber: 2.7 Consensus size: 167
9279440 ATACCACAGT
* * * * * * *
9279450 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-AAGACAAATTGA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGA-TTTTTTTGACAACAGAAATTGA
* * * *
9279514 AAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTG
65 AATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTG
* *
9279578 AAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGC
127 AAAGGAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGC
9279619 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
9279684 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAG
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAG
9279749 GAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGC
131 GAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGC
9279786 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
9279851 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
9279909 GTAAAACAGA
Statistics
Matches: 275, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
166 2 0.01
167 209 0.76
168 9 0.03
169 55 0.20
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (167 bp):
GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAG
GAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGC
Found at i:9279745 original size:76 final size:75
Alignment explanation
Indices: 9279599--9279741 Score: 234
Period size: 74 Copynumber: 1.9 Consensus size: 75
9279589 TTGAAAAACG
* *
9279599 GAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTT
1 GAAATTGAAATTACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTT
9279664 TTTTGACAACA
65 TTTTGACAACA
* *
9279675 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAATTACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTTT
9279739 TTT
66 TTT
9279742 TTGAAAGGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
74 40 0.63
76 23 0.37
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAATTACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTTT
TTTGACAACA
Found at i:9280018 original size:882 final size:883
Alignment explanation
Indices: 9278474--9280486 Score: 3508
Period size: 882 Copynumber: 2.3 Consensus size: 883
9278464 AAAATAGATT
* * *
9278474 TTGAAAATA-CTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTT
1 TTGAAAATAGCTCAG-CACGTGAGCCAAGGCTCAACTCACATCTCGCAATGTGAGTTGA-TTTTT
9278537 TGAAAAATATAAATTG-AAAAATACCACAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
64 TGAAAAATATAAATTGAAAAAATACCACAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
9278601 TGAGTTGATTTTTTTGAAAGACAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACC
129 TGAGTTGATTTTTTTGAAAGACAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACC
9278666 TCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATTACC
194 TCTCGCAATATGAGTTGA-TTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATTACC
9278731 TCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAA
258 TCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAA
9278796 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTTTTT
323 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTTTTT
* *
9278861 TGAAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCG
388 TGAAAGGAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCG
9278926 CCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
453 CCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
9278991 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTGAAAATACCTCAGCA
518 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTGAAAATACCTCAGCA
9279056 TGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAAAAACAGAAATTGAAAATAGCTCAGC
583 TGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAAAAACAGAAATTGAAAATAGCTCAGC
9279121 GTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAG
648 GTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAG
*
9279186 CAGATTTTGAAAATACCTCGATATGTGACTGAAGGTTCAACTCACCTCTCGTAATATGAGTTGAT
713 CAGATTTTGAAAATACCTCAATATGTGACTGAAGGTTCAACTCACCTCTCGTAATATGAGTTGAT
9279251 TTTTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGCAGAAATTAAAAAGCTCAACTCACC
778 TTTTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGCAGAAATTAAAAAGCTCAACTCACC
9279316 TCTCGCAATATGAGTTGAATTTTTTTG-AAAAAAACAGAAA
843 TCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAA
*
9279356 TTGAAAATAGCTCAGCACGTGAGTCAAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTG
1 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTG
9279421 AAAAATATAAATTGAAAAAATACCACAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
66 AAAAATATAAATTGAAAAAATACCACAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
9279486 AGTTGATTTTTTTTGAAAGACAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCT
131 AGTTGA-TTTTTTTGAAAGACAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCT
9279551 CTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTC
195 CTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTC
9279616 GGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATT
260 GGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATT
*
9279681 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTG
325 GAAATTACCTCAGCGTGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
9279745 AAAGGAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCGCC
390 AAAGGAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCGCC
9279810 TCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
455 TCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
9279875 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTGAAAATACCTCAGCATG
520 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTGAAAATACCTCAGCATG
9279940 TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAAAAACAGAAATTGAAAATAGCTCAGCGT
585 TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAAAAACAGAAATTGAAAATAGCTCAGCGT
9280005 GTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAGCA
650 GTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAGCA
9280070 GATTTTGAAAATACCTCAATATGTGACTGAAGGTTCAACTCACCTCTCGTAATATGAGTTGATTT
715 GATTTTGAAAATACCTCAATATGTGACTGAAGGTTCAACTCACCTCTCGTAATATGAGTTGATTT
*
9280135 TTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTTGCAGAAATTAAAAAGCTCAACTCACCTC
780 TTGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGCAGAAATTAAAAAGCTCAACTCACCTC
9280200 TCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAA
845 TCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAA
* * *
9280239 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTCA
1 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTT-T
* * * * * ** * * * *
9280304 AAACAGAATCTGAAAAATAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACAT
65 GAA-A-AA--T-ATAAATTGA----AAAAATACCACAG-TGTGTGATCTGAAGCTCAACTCACCT
* * * * * *
9280368 CTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACCTCAGTGTGTGAGCTGAA
120 CTCGCAATATGAGTTGATTTTTTTG--AAAGACAAATTG-AAAATAGCTCAGCGCGTGAGC-CAA
*
9280433 -GCTCAACTCACCTCTCGC-ATATGAGTTGA---TTTTTTGAAAGACAGAAATTGAAAA
181 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
9280487 TAGCTCAGCG
Statistics
Matches: 1080, Mismatches: 31, Indels: 31
0.95 0.03 0.03
Matches are distributed among these distances:
882 516 0.48
883 337 0.31
884 78 0.07
885 1 0.00
886 2 0.00
888 1 0.00
889 7 0.01
891 24 0.02
892 9 0.01
893 46 0.04
894 21 0.02
895 36 0.03
896 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (883 bp):
TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTG
AAAAATATAAATTGAAAAAATACCACAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAAGACAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATTACCTCG
GCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTG
AAATTACCTCAGCGTGTCCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTTTTTTGA
AAGGAAAAAATTGAAAAACGGAAATTGAAATTACCTCGGCGTGTGACCTGAGGCTCAACTCGCCT
CTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGTAAAACAGAAACTGAAAATACCTCAGCATGT
CTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAAAAACAGAAATTGAAAATAGCTCAGCGTG
TGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTATCTTGGAAAGCAG
ATTTTGAAAATACCTCAATATGTGACTGAAGGTTCAACTCACCTCTCGTAATATGAGTTGATTTT
TGAAAAACAGAAATTAAAAGACTCAACTCAACTCTCGCAGAAATTAAAAAGCTCAACTCACCTCT
CGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAA
Found at i:9280179 original size:30 final size:30
Alignment explanation
Indices: 9280143--9280200 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
9280133 TTTTGAAAAA
9280143 CAGAAATT-AAAAGACTCAACTCAACTCTTG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTTG
*
9280173 CAGAAATTAAAAAGCTCAACTCACCTCT
1 CAGAAATTAAAAAGCTCAACTCAACTCT
9280201 CGCAATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTTG
Found at i:9280610 original size:54 final size:54
Alignment explanation
Indices: 9280505--9280615 Score: 136
Period size: 54 Copynumber: 2.0 Consensus size: 54
9280495 CGCGTGAGCC
*
9280505 AAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AA
1 AAGGCTCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAA
* * * *
9280559 AAGGTTCAACCCACCTCTTGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAA
1 AAGGCTCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAA
9280614 AA
1 AA
9280616 CAGAAATTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
54 36 0.73
55 9 0.18
56 4 0.08
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (54 bp):
AAGGCTCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAA
Found at i:9280749 original size:53 final size:54
Alignment explanation
Indices: 9280650--9280754 Score: 135
Period size: 53 Copynumber: 1.9 Consensus size: 54
9280640 GACCTGAGGC
*
9280650 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
9280704 TCAAC-CACCTCTCACAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACTCACCTCTCACAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
9280755 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
53 27 0.60
54 14 0.31
55 4 0.09
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (54 bp):
TCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:9280773 original size:139 final size:140
Alignment explanation
Indices: 9280466--9281363 Score: 1084
Period size: 140 Copynumber: 6.5 Consensus size: 140
9280456 AGTTGATTTT
* *
9280466 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCA--GCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
*
9280530 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTTGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
9280595 TTGAACAACGTAAA
127 TTGAACAACGTAAA
*
9280609 TTGAAAACAGAAATTGAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
9280674 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTCTCACAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9280738 ACAACGTAAA
131 ACAACGTAAA
9280748 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** * *
9280813 TTGAAATTAAAAAAGTAGAAATTAAAAGGTTCAACCTACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9280878 ACAACGTAAA
131 ACAACGTAAA
* *
9280888 TTGAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
9280953 CTGATTTTGAAAAAGCAGAAATTAAAAGGTTCAACCCACGTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9281018 ACAACGTAAA
131 ACAACGTAAA
9281028 TTG-AAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** * * * *
9281092 TTGAAATT-AAAACA-CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAG
66 CTGATTTTGAAAA-AGTAGAAATT---AA-A----A--G-G---T-----TCAACCCACCTCTCG
*
9281155 CAATATGAGTTGATT-TTG----A-GTCAA
111 CAATATGAGTTGATTCTTGAACAACGTAAA
* * * * *
9281179 TTTAAAAC------TAAAAATACCTCAGCATG-CCCGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
9281237 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG-
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
9281301 ---AC-----
131 ACAACGTAAA
* * *
9281303 ----AAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
9281364 TTGAAATTAA
Statistics
Matches: 673, Mismatches: 48, Indels: 84
0.84 0.06 0.10
Matches are distributed among these distances:
120 4 0.01
126 14 0.02
127 57 0.08
128 4 0.01
132 1 0.00
135 1 0.00
136 1 0.00
138 13 0.02
139 199 0.30
140 239 0.36
141 2 0.00
142 22 0.03
143 8 0.01
145 37 0.05
146 28 0.04
148 1 0.00
149 1 0.00
151 6 0.01
152 6 0.01
156 3 0.00
157 26 0.04
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:9281037 original size:279 final size:279
Alignment explanation
Indices: 9280473--9281375 Score: 1142
Period size: 279 Copynumber: 3.3 Consensus size: 279
9280463 TTTTTGAAAG
* * *
9280473 ACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 ACAGAAATTGAAAATACCTCA--GCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
** * * *
9280537 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTTGCAATATGAGTTGATTCTTGAACA
63 AAATTAAAAAAGTAGAAATTAAAAGGTTCAACCTACCTCTAGCAATATGAGTTGATTCTTGAACA
*
9280602 ACGTAAATTGAAAACAGAAATTGAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCA
128 ACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
*
9280667 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTCTCACAATATGAGTTGA
193 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
9280731 TTCTTGAACAACGTAAATTGAAA
258 TTCTTGAACAACGTAAATTG-AA
9280754 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
*
9280819 TTAAAAAAGTAGAAATTAAAAGGTTCAACCTACCTCTCGCAATATGAGTTGATTCTTGAACAACG
66 TTAAAAAAGTAGAAATTAAAAGGTTCAACCTACCTCTAGCAATATGAGTTGATTCTTGAACAACG
* *
9280884 TAAATTGAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGTAATA
131 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* *
9280949 TGAGCTGATTTTGAAAAAGCAGAAATTAAAAGGTTCAACCCACGTCTCGCAATATGAGTTGATTC
196 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
9281014 TTGAACAACGTAAATTGAA
261 TTGAACAACGTAAATTGAA
9281033 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
* * * *
9281098 TTAAAACA-CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATG
66 TTAAAAAAGTAGAAATT---AA-A----AG-GT----TCA---AC--CT-ACCTCTAGCAATATG
* * * * *
9281162 AGTTGATT-TTG----A-GTCAATTTAAAAC------TAAAAATACCTCAGCATG-CCCGAGGCT
112 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
* *
9281214 CAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
177 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
9281279 TCGCAATATGAGTTGATTCTTG----AC--------AA
242 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAA
* * *
9281305 ACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
9281370 TTAAAA
66 TTAAAA
9281376 CACAGAAATT
Statistics
Matches: 568, Mismatches: 33, Indels: 51
0.87 0.05 0.08
Matches are distributed among these distances:
272 70 0.12
278 9 0.02
279 272 0.48
280 43 0.08
281 22 0.04
282 1 0.00
284 90 0.16
285 15 0.03
286 2 0.00
287 2 0.00
291 13 0.02
292 1 0.00
294 1 0.00
296 5 0.01
297 22 0.04
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (279 bp):
ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
TTAAAAAAGTAGAAATTAAAAGGTTCAACCTACCTCTAGCAATATGAGTTGATTCTTGAACAACG
TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
TTGAACAACGTAAATTGAA
Found at i:9281140 original size:72 final size:72
Alignment explanation
Indices: 9281033--9281240 Score: 258
Period size: 72 Copynumber: 2.9 Consensus size: 72
9281023 GTAAATTGAA
9281033 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
9281098 TTAAAAC
66 TTAAAAC
* * **
9281105 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
* **
9281170 TTGAGTC
66 TTAAAAC
* * * * * *
9281177 A-ATTTAAAACTAAAAATACCTCAGCATG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
1 ACA---GAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
9281240 A
63 A
9281241 TTTTGAAAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
71 1 0.01
72 66 0.56
73 32 0.27
74 19 0.16
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (72 bp):
ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
TTAAAAC
Found at i:9281290 original size:284 final size:273
Alignment explanation
Indices: 9280904--9281443 Score: 857
Period size: 272 Copynumber: 1.9 Consensus size: 273
9280894 ACAGAAATTG
* * *
9280904 AAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGCTGATTTTGAAAAAGC
1 AAAATACCTCAACATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGC
*
9280969 AGAAATTAAAAGGTTCAACCCACGTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAA
66 AGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG----AC--------AAA
9281034 CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAAT
119 CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAAT
9281099 TAAAACACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAG
184 TAAAACACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAG
9281164 TTGATTTTGAGTCAATTTAAAACTA
249 TTGATTTTGAGTCAATTTAAAACTA
* * * *
9281189 AAAATACCTCAGCATG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAGT
1 AAAATACCTCAACATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGC
9281253 AGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAA
66 AGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAA
* * *
9281318 TTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAGAA
131 ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAGAA
*
9281383 ATTGAAAATACCTTAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATTTT
196 ATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATTTT
9281444 TAAGAACAAA
Statistics
Matches: 243, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
272 137 0.56
280 2 0.01
284 90 0.37
285 14 0.06
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (273 bp):
AAAATACCTCAACATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGC
AGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAA
ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAGAA
ATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATTTTGAGT
CAATTTAAAACTA
Found at i:9281359 original size:73 final size:73
Alignment explanation
Indices: 9281267--9281451 Score: 239
Period size: 72 Copynumber: 2.5 Consensus size: 73
9281257 ATTAAAAGGT
* * * * *
9281267 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAA-ACAGAAATTGAAATTACCTCATCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATT-AAAACACAGAAATTGAAAATACCTCAGCGTG
*
9281331 TCCTGAGGC
65 ACCTGAGGC
* *
9281340 TCAACTCACCTCTCGCAATATGAGTTGA-AATTAAAACACAGAAATTGAAAATACCTTAGCGTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTAAAACACAGAAATTGAAAATACCTCAGCGTGA
9281404 CCTGAGGC
66 CCTGAGGC
* * *
9281412 TCGACTCACCTCTAGCAATATGAGTTGATTTTTAAGAACA
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTAA-AACA
9281452 AAAATAAAAA
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 3 0.03
72 59 0.61
73 31 0.32
74 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTATTAAAACACAGAAATTGAAAATACCTCAGCGTGA
CCTGAGGC
Found at i:9291778 original size:2 final size:2
Alignment explanation
Indices: 9291771--9291802 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
9291761 ATATGTGCAA
*
9291771 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9291803 GTACATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9291842 original size:15 final size:15
Alignment explanation
Indices: 9291824--9291875 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
9291814 ATACACTAAT
9291824 ATAATAATAGTTATA
1 ATAATAATAGTTATA
* **
9291839 ATAATACTAGCAATA
1 ATAATAATAGTTATA
*
9291854 ATAATAAT--TTGTA
1 ATAATAATAGTTATA
9291867 ATAATAATA
1 ATAATAATA
9291876 TATACACAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 10 0.34
15 19 0.66
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (15 bp):
ATAATAATAGTTATA
Found at i:9292514 original size:29 final size:28
Alignment explanation
Indices: 9292480--9292557 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 28
9292470 GGTTTCTTGG
**
9292480 TTTTTTTGGGGGGTTAGGTTTTTTCT-T
1 TTTTTTTTTGGGGTTAGGTTTTTTCTCT
9292507 TTTTTTTTTGGGGTTAGGTTTTTTCTCT
1 TTTTTTTTTGGGGTTAGGTTTTTTCTCT
*
9292535 TTTTTTTTT-TGGTTAGGTTTTTT
1 TTTTTTTTTGGGGTTAGGTTTTTT
9292558 TTTTGGGAGG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 37 0.79
28 10 0.21
ACGTcount: A:0.04, C:0.04, G:0.23, T:0.69
Consensus pattern (28 bp):
TTTTTTTTTGGGGTTAGGTTTTTTCTCT
Found at i:9293416 original size:4 final size:4
Alignment explanation
Indices: 9293407--9293432 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
9293397 ATAGTAGATG
9293407 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
9293433 AAGGTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:9295353 original size:2 final size:2
Alignment explanation
Indices: 9295346--9295399 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
9295336 CGTTATGTTT
9295346 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9295388 TA TA TA TA TA TA
1 TA TA TA TA TA TA
9295400 AAGGTATAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9297618 original size:38 final size:37
Alignment explanation
Indices: 9297503--9297619 Score: 126
Period size: 39 Copynumber: 3.0 Consensus size: 37
9297493 TCCAATTTCT
* *
9297503 AGCACAAAGCCTGCGGGATTTAACCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCGGATA--TAATACC
* ** *
9297542 AGCACTAGGCCTGCGGCCTATAAGTCCGGATATAATACC
1 AGCACTAAGCCTGCGGGATTTAA--CCGGATATAATACC
*
9297581 AGCATTAAGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACTAAGCCTGCGGGATTTAA-CCGGATATAATACC
9297619 A
1 A
9297620 CATAAATTTT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
38 15 0.23
39 42 0.66
41 7 0.11
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (37 bp):
AGCACTAAGCCTGCGGGATTTAACCGGATATAATACC
Found at i:9309326 original size:12 final size:12
Alignment explanation
Indices: 9309311--9309335 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9309301 TATTTATGTT
9309311 TTATATTATTCA
1 TTATATTATTCA
9309323 TTATATTATTCA
1 TTATATTATTCA
9309335 T
1 T
9309336 AATTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATATTATTCA
Found at i:9317554 original size:136 final size:137
Alignment explanation
Indices: 9317310--9317595 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
9317300 CATTGGGCCT
** * *
9317310 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
9317375 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
9317439 CATATGC
131 CATATGC
9317446 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
9317511 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
9317576 CATATGC
131 CATATGC
9317583 AAGCCCATTTGGG
1 AAGCCCATTTGGG
9317596 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 123 0.85
137 22 0.15
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:9319417 original size:26 final size:26
Alignment explanation
Indices: 9319381--9319516 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
9319371 CATGATATTC
9319381 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
9319407 TTATCATGAAACATTTACCTCACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
9319433 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
9319459 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
9319485 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
9319511 TTATCA
1 TTATCA
9319517 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:9322552 original size:25 final size:26
Alignment explanation
Indices: 9322503--9322553 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
9322493 ATTTTTATTT
*
9322503 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
9322529 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
9322554 ATCTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:9322680 original size:44 final size:46
Alignment explanation
Indices: 9322626--9322714 Score: 112
Period size: 44 Copynumber: 2.0 Consensus size: 46
9322616 TACAATATCT
* *
9322626 ATTCTATTCAACAAAACACA-AGAATT-CT-ATTATAGCTCTATTCA
1 ATTCCATTCAACAAAACA-ATAGAATTACTGATTACAGCTCTATTCA
* *
9322670 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGCTCTATTC
1 ATTCCATTCAACAAAACAATAGAATTACTGATTACAGCTCTATTC
9322715 CATTACAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 21 0.55
45 2 0.05
46 14 0.37
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (46 bp):
ATTCCATTCAACAAAACAATAGAATTACTGATTACAGCTCTATTCA
Found at i:9322721 original size:16 final size:16
Alignment explanation
Indices: 9322700--9322754 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
9322690 TGAATTACTG
9322700 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
9322716 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
*
9322732 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
9322748 ATTACAG
1 ATTACAG
9322755 TAAACTAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:9324557 original size:22 final size:22
Alignment explanation
Indices: 9324532--9324578 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
9324522 TTAAAAGTAC
9324532 ATATGAATAAAATA-AAATTTTA
1 ATATGAAT-AAATACAAATTTTA
* *
9324554 ATATGGATAAATACTAATTTTA
1 ATATGAATAAATACAAATTTTA
9324576 ATA
1 ATA
9324579 AGCGTAATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.38
Consensus pattern (22 bp):
ATATGAATAAATACAAATTTTA
Found at i:9329210 original size:23 final size:20
Alignment explanation
Indices: 9329181--9329226 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 20
9329171 TAAAAATTAT
9329181 TAATTTTTTAAATATTTTATTTG
1 TAATTTTTTAAA-A--TTATTTG
9329204 TAA-TTTTTAAAATTATTTG
1 TAATTTTTTAAAATTATTTG
9329223 TAAT
1 TAAT
9329227 CTATTAACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 10 0.45
21 1 0.05
22 8 0.36
23 3 0.14
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
TAATTTTTTAAAATTATTTG
Found at i:9330254 original size:2 final size:2
Alignment explanation
Indices: 9330247--9330274 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9330237 AAGAATGGAA
9330247 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9330275 GGTTTTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9330684 original size:23 final size:23
Alignment explanation
Indices: 9330654--9330700 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
9330644 TAATTAATTA
9330654 ATTTAAATAATAGTTATCTTAAT
1 ATTTAAATAATAGTTATCTTAAT
* *
9330677 ATTTAAATCATATTTATCTTAAT
1 ATTTAAATAATAGTTATCTTAAT
9330700 A
1 A
9330701 ATAAATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTAAATAATAGTTATCTTAAT
Found at i:9335551 original size:2 final size:2
Alignment explanation
Indices: 9335544--9335580 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
9335534 ATAAACGTAT
9335544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9335581 TTAAATGCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9338200 original size:137 final size:138
Alignment explanation
Indices: 9337937--9338238 Score: 324
Period size: 137 Copynumber: 2.2 Consensus size: 138
9337927 AATGTTAGTG
* * * * *
9337937 TTTTTTATTTCATGTTGCTTTAAGCTTTTAAAATTTTAAATTATTTTTTAACATATTAGTTCTTT
1 TTTTTTATTTCATATTACTTCAAACTTTTAAAATTTTAAATTAATTTTTAACATATTAGTTCTTT
** * * * *** * * *
9338002 GATTAGTTGGTTAGATAGTTGCAAATACATCCTTGAGTCTTGGATACAATTCATTTTCTACTTAT
66 GATTACATGATTAAATAGTTGCAAATACATCCTTGAATCTCCAATACAATTCATTTACTACTCAC
*
9338067 ATTTGT-T
131 ATTTATAT
* * * *
9338074 TTTTTTATTTTATATTACTTCATACTTTTTAAATTTTTAATTAATTTTTAACATATTAGTTC-TT
1 TTTTTTATTTCATATTACTTCAAACTTTTAAAATTTTAAATTAATTTTTAACATATTAGTTCTTT
* * *
9338138 GCATTACATGATTAAATAGTTGCAATTGCATCTTTGAATCTCCAATTTA-AATTC-TTTACTACT
66 G-ATTACATGATTAAATAGTTGCAAATACATCCTTGAATCTCCAA--TACAATTCATTTACTACT
9338201 CACATTTATAT
128 CACATTTATAT
*
9338212 TTTTTTATTTCATATTGCTTCAAACTT
1 TTTTTTATTTCATATTACTTCAAACTT
9338239 CACTACTCCA
Statistics
Matches: 134, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
136 3 0.02
137 99 0.74
138 30 0.22
139 2 0.01
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (138 bp):
TTTTTTATTTCATATTACTTCAAACTTTTAAAATTTTAAATTAATTTTTAACATATTAGTTCTTT
GATTACATGATTAAATAGTTGCAAATACATCCTTGAATCTCCAATACAATTCATTTACTACTCAC
ATTTATAT
Found at i:9348161 original size:12 final size:11
Alignment explanation
Indices: 9348144--9348221 Score: 79
Period size: 12 Copynumber: 6.8 Consensus size: 11
9348134 CCAATCTTTC
9348144 TTTTTATTTTT
1 TTTTTATTTTT
9348155 ATTTTTATTTTT
1 -TTTTTATTTTT
*
9348167 ATTTTT-TTATT
1 -TTTTTATTTTT
9348178 TTTTTATTTTT
1 TTTTTATTTTT
9348189 TTATTTATTATTT
1 TT-TTTATT-TTT
9348202 TATTTT-TTTTT
1 T-TTTTATTTTT
*
9348213 ATTTTATTT
1 TTTTTATTT
9348222 ATTTAAATAT
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
10 9 0.16
11 16 0.28
12 25 0.43
13 7 0.12
14 1 0.02
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:9348175 original size:8 final size:8
Alignment explanation
Indices: 9348144--9348225 Score: 96
Period size: 8 Copynumber: 10.1 Consensus size: 8
9348134 CCAATCTTTC
9348144 TTTTTATT
1 TTTTTATT
*
9348152 TTTATTTTT
1 TTT-TTATT
9348161 ATTTTTATT
1 -TTTTTATT
9348170 TTTTTATT
1 TTTTTATT
9348178 TTTTTATT
1 TTTTTATT
9348186 TTTTTA-T
1 TTTTTATT
*
9348193 TTATTATT
1 TTTTTATT
*
9348201 TTATT-TT
1 TTTTTATT
9348208 TTTTTATT
1 TTTTTATT
9348216 TTATTTATT
1 TT-TTTATT
9348225 T
1 T
9348226 AAATATTAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
7 12 0.18
8 35 0.54
9 15 0.23
10 3 0.05
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTATT
Found at i:9348175 original size:20 final size:20
Alignment explanation
Indices: 9348144--9348221 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 20
9348134 CCAATCTTTC
9348144 TTTTTATTTTTATTTTTATT
1 TTTTTATTTTTATTTTTATT
9348164 TTTATT-TTTTTATTTTTTTATT
1 TTT-TTATTTTTA--TTTTTATT
9348186 TTTTTATTTATTA-TTTTATT
1 TTTTTATTT-TTATTTTTATT
*
9348206 TTTTTTTATTTTATTT
1 TTTTTAT-TTTTATTT
9348222 ATTTAAATAT
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
20 25 0.50
21 8 0.16
22 14 0.28
23 3 0.06
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTATTTTTATTTTTATT
Found at i:9348195 original size:28 final size:28
Alignment explanation
Indices: 9348150--9348225 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
9348140 TTTCTTTTTA
9348150 TTTTTATTTTTATT-TTTATTTTTTTATT
1 TTTTTATTTTT-TTATTTATTTTTTTATT
*
9348178 TTTTTATTTTTTTATTTATTATTTTATT
1 TTTTTATTTTTTTATTTATTTTTTTATT
*
9348206 TTTTT-TTATTTTATTTATTT
1 TTTTTATTTTTTTATTTATTT
9348226 AAATATTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 15 0.34
28 29 0.66
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (28 bp):
TTTTTATTTTTTTATTTATTTTTTTATT
Found at i:9348233 original size:35 final size:36
Alignment explanation
Indices: 9348163--9348233 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
9348153 TTATTTTTAT
* * **
9348163 TTTTATTTTTTTATTTTTTTATTTTTTTATTTATTA
1 TTTTATTTTTTTATTATTTTATTTATTTAAATATTA
9348199 TTTTATTTTTTT-TTATTTTATTTATTTAAATATTA
1 TTTTATTTTTTTATTATTTTATTTATTTAAATATTA
9348234 ATAAATTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 19 0.61
36 12 0.39
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (36 bp):
TTTTATTTTTTTATTATTTTATTTATTTAAATATTA
Found at i:9349388 original size:118 final size:116
Alignment explanation
Indices: 9349182--9349410 Score: 359
Period size: 118 Copynumber: 2.0 Consensus size: 116
9349172 TGTTTTCCAT
* * *
9349182 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACGGGGTAGGTGCTTGGGTTGTCATTCT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACAGGGTAGGTGCTTGGGTTGTCATTCT
9349247 ACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 ACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
**
9349298 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCAGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAA-CAGGGTA-GGTGCTTGGGTTGTCATT
* ** *
9349363 CTACTTTGCGTCAAAAGGTTGTGTGACGTGTTAGGTAAAACTCCGCTA
64 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA
9349411 ACCGGAAATA
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 34 0.33
117 6 0.06
118 62 0.61
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (116 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACAGGGTAGGTGCTTGGGTTGTCATTCT
ACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:9353729 original size:44 final size:43
Alignment explanation
Indices: 9353666--9353798 Score: 151
Period size: 44 Copynumber: 3.0 Consensus size: 43
9353656 TACTATAGCG
* **
9353666 AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCTACA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGTAGA-TGAAGCTACA
*
9353710 AATCTTATCTCCTTGAAGTTACAGTGGAGTAGGATAAAGCTACA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGTA-GATGAAGCTACA
* * * *
9353754 ATTCATATATCCTTAAAGTTACAGT-GAGTCAGAATGAAGCTACA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGT-AG-ATGAAGCTACA
9353798 A
1 A
9353799 CTACAAATCC
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
43 5 0.06
44 70 0.91
45 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCTTGAAGTTACAGTGGAGTAGATGAAGCTACA
Found at i:9353897 original size:94 final size:93
Alignment explanation
Indices: 9353797--9354019 Score: 259
Period size: 94 Copynumber: 2.4 Consensus size: 93
9353787 ATGAAGCTAC
* * *** *
9353797 AACTACAAATCCTATACCCTTGAAGTTGCAGTGGGTTAGATTGAATCTGTTATAGCGAATTTTAT
1 AACTACAAATCCTA-ACCCCTGAAGTTGCAGTGGGTTAGATTAAATCTACCATAGCAAATTTTAT
*** *
9353862 CTTTTTGAAGTTACAGTGGAGCAGATTGA
65 CTCCCTGAAGTTACAGTGGAGAAGATTGA
* * * * * *
9353891 AGCTACAAACCCTGCACCCCTGAAATTGCAGTGGATTGGATTAAATCTACCATAGCAAATTTTAT
1 AACTACAAATCCT-AACCCCTGAAGTTGCAGTGGGTTAGATTAAATCTACCATAGCAAATTTTAT
**
9353956 CTCCCTGAAGTTGTAGTGGAGAAGATTGA
65 CTCCCTGAAGTTACAGTGGAGAAGATTGA
9353985 AACTACAAATCC-AACCCCTGAAGTTGCAGTGGGTT
1 AACTACAAATCCTAACCCCTGAAGTTGCAGTGGGTT
9354020 TGAATGAAAC
Statistics
Matches: 105, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
92 20 0.19
94 85 0.81
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (93 bp):
AACTACAAATCCTAACCCCTGAAGTTGCAGTGGGTTAGATTAAATCTACCATAGCAAATTTTATC
TCCCTGAAGTTACAGTGGAGAAGATTGA
Found at i:9354227 original size:44 final size:44
Alignment explanation
Indices: 9354133--9354243 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 44
9354123 TACTATAGTG
* * * *
9354133 AATCTTATCTCTCTGAAGTTGCAGTGGAGTATATTGAAGCTGTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATA
*
9354177 AATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTGAA-C-ATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATA
* *
9354219 CAATTCTTATATCCTTGAAGTTGCA
1 -AA-TCTTATCTCCCTGAAGTTGCA
9354244 ATAGGTTAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
42 2 0.04
43 3 0.05
44 52 0.91
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATA
Found at i:9356940 original size:47 final size:47
Alignment explanation
Indices: 9356831--9356941 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
9356821 CCGGGATAAG
*
9356831 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
9356878 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
9356925 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
9356942 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:9359666 original size:11 final size:13
Alignment explanation
Indices: 9359645--9359709 Score: 53
Period size: 15 Copynumber: 4.7 Consensus size: 13
9359635 ATCAACATCC
9359645 AAAATAAAAT-AT
1 AAAATAAAATAAT
9359657 AAAA-AAAATAAT
1 AAAATAAAATAAT
*
9359669 AAATAGTACAATAAAGT
1 AAA-A-TAAAAT-AA-T
9359686 AAAATAAAATTAAT
1 AAAATAAAA-TAAT
9359700 AAAAATAAAA
1 -AAAATAAAA
9359710 AAATTTGGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
11 5 0.12
12 9 0.21
13 1 0.02
14 1 0.02
15 19 0.44
16 4 0.09
17 4 0.09
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAATAAAATAAT
Found at i:9363463 original size:10 final size:10
Alignment explanation
Indices: 9363432--9363464 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
9363422 AAAGATAAAT
9363432 AATAAAGATA
1 AATAAAGATA
*
9363442 ATTAAAGATA
1 AATAAAGATA
9363452 AATAAAGATA
1 AATAAAGATA
9363462 AAT
1 AAT
9363465 GAAATTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (10 bp):
AATAAAGATA
Found at i:9369583 original size:12 final size:12
Alignment explanation
Indices: 9369563--9369596 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9369553 ACATAATTAA
9369563 AAAATAAATAAT
1 AAAATAAATAAT
* *
9369575 TATATAAATAAT
1 AAAATAAATAAT
9369587 AAAATAAATA
1 AAAATAAATA
9369597 TAATAGCATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAAATAAT
Found at i:9371063 original size:30 final size:30
Alignment explanation
Indices: 9371027--9371094 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
9371017 AATCTGGTAT
*
9371027 GTGGTTAATTATGGGAC-TAGTGGGATGTGG
1 GTGGTTAATTAT-GGACTTAATGGGATGTGG
9371057 GTGGTTAATTATGGACTTAATGGGATGTGG
1 GTGGTTAATTATGGACTTAATGGGATGTGG
9371087 GTGGTTAA
1 GTGGTTAA
9371095 GAAATTATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 4 0.11
30 32 0.89
ACGTcount: A:0.22, C:0.03, G:0.40, T:0.35
Consensus pattern (30 bp):
GTGGTTAATTATGGACTTAATGGGATGTGG
Found at i:9371888 original size:26 final size:26
Alignment explanation
Indices: 9371851--9371986 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
9371841 TGATACAAAT
* *
9371851 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9371877 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
9371903 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9371929 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9371955 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9371981 TGATAA
1 TGATAA
9371987 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:9374883 original size:31 final size:31
Alignment explanation
Indices: 9374847--9374906 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
9374837 TGTATGCATT
9374847 TTAGCATTTTAATAGTTAATGGATGATGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGCA
9374878 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
9374907 GCATGGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (31 bp):
TTAGCATTTTAATAGTTAATGGATGATGGCA
Found at i:9376414 original size:25 final size:25
Alignment explanation
Indices: 9376385--9376433 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
9376375 ATAGTTTTAC
9376385 CCCTAGGAGATAAATT-ACCGAAATA
1 CCCTAGG-GATAAATTGACCGAAATA
* *
9376410 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
9376434 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGGATAAATTGACCGAAATA
Found at i:9378053 original size:12 final size:12
Alignment explanation
Indices: 9378033--9378063 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
9378023 ACTCGGGGAA
*
9378033 GAGGTCGTGGTC
1 GAGGCCGTGGTC
9378045 GAGGCCGTGGTC
1 GAGGCCGTGGTC
9378057 GAGGCCG
1 GAGGCCG
9378064 AGGTAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.23, G:0.52, T:0.16
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:9382681 original size:32 final size:32
Alignment explanation
Indices: 9382645--9382706 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
9382635 TGTATGCATT
9382645 TTAGCATTTTAATAGTTAATGGATGATGGGTA
1 TTAGCATTTTAATAGTTAATGGATGATGGGTA
9382677 TTAGCATTTTAATAGTTAATGGATGATGGG
1 TTAGCATTTTAATAGTTAATGGATGATGGG
9382707 CATGGTAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.26, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGTA
Found at i:9384237 original size:25 final size:25
Alignment explanation
Indices: 9384189--9384237 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
9384179 ACAGTTTTAC
9384189 CCCTAGGAGATAAATTACCGAAATA
1 CCCTAGGAGATAAATTACCGAAATA
* *
9384214 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAGATAAATT-ACCGAAAT
9384238 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGAGATAAATTACCGAAATA
Found at i:9385696 original size:12 final size:13
Alignment explanation
Indices: 9385662--9385693 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9385652 TATTTTATTA
*
9385662 ATATTTTAATAAT
1 ATATTTTAATAAG
9385675 ATATTTTAATAAG
1 ATATTTTAATAAG
9385688 ATATTT
1 ATATTT
9385694 AATTATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:9390332 original size:15 final size:16
Alignment explanation
Indices: 9390301--9390333 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9390291 ATTTGAATTG
*
9390301 ATTTTATCTATTTTTT
1 ATTTTATCTAATTTTT
9390317 ATTTTAT-TAATTTTT
1 ATTTTATCTAATTTTT
9390332 AT
1 AT
9390334 AATTTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
ATTTTATCTAATTTTT
Found at i:9395238 original size:90 final size:86
Alignment explanation
Indices: 9395076--9395271 Score: 207
Period size: 90 Copynumber: 2.2 Consensus size: 86
9395066 AAACTTTTTC
* * *
9395076 AAAAAACTAATTAAGCCTCTCTGTTTTTTTTACACTCAATTGAGCACTTGAATTTTCAAAGTGTA
1 AAAAAAC-AATTAAGCC-CTCTGTTTTTTTTACACTCAATTGAGCACTTAAACTTTCAAAGTGCA
*
9395141 TTAAAAAAGCCCTCAAACTTCTTCAAA
64 TCAAAAAA-CCCTCAAA-TT-TT-AAA
* * *
9395168 AAAAAACAATTAAGCCC-CTGTTCTTTTTTTCACTCAATTGGGTACTTAAACTTTCAACA-TGCA
1 AAAAAACAATTAAGCCCTCTGTT-TTTTTTACACTCAATTGAGCACTTAAACTTTCAA-AGTGCA
* **
9395231 TCAAAAAACTCTCAAATTTTTGA
64 TCAAAAAACCCTCAAATTTTAAA
*
9395254 AAAAAGCAATTAAGCCCT
1 AAAAAACAATTAAGCCCT
9395272 GCTCTTATTA
Statistics
Matches: 90, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
86 17 0.19
87 2 0.02
88 2 0.02
89 12 0.13
90 40 0.44
91 10 0.11
92 7 0.08
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (86 bp):
AAAAAACAATTAAGCCCTCTGTTTTTTTTACACTCAATTGAGCACTTAAACTTTCAAAGTGCATC
AAAAAACCCTCAAATTTTAAA
Found at i:9395333 original size:25 final size:26
Alignment explanation
Indices: 9395293--9395375 Score: 91
Period size: 25 Copynumber: 3.2 Consensus size: 26
9395283 AAATTAGAAA
9395293 AAAATTATTAAATTTTAATAAAAATAT
1 AAAATTA-TAAATTTTAATAAAAATAT
*
9395320 AAAA-TATAAATTTTATTAAAAATA-
1 AAAATTATAAATTTTAATAAAAATAT
*
9395344 AAAATTTGTAAAATTTT-ATAAAAATAAT
1 AAAA-TTAT-AAATTTTAATAAAAAT-AT
9395372 AAAA
1 AAAA
9395376 AAATTTAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
24 4 0.08
25 17 0.35
26 11 0.23
27 12 0.25
28 4 0.08
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (26 bp):
AAAATTATAAATTTTAATAAAAATAT
Found at i:9395864 original size:87 final size:86
Alignment explanation
Indices: 9395773--9395985 Score: 232
Period size: 87 Copynumber: 2.5 Consensus size: 86
9395763 AGAAGTATAG
* * * * * *
9395773 GCTTAATTACTTTTTCTGAAAAAATTTGAGAGTCTTTTTGATGCATTTTGAAAGTTTAAGTTCCC
1 GCTTAATTGCTTTTTTTGAAAAAATTTGAG-GCCTTTTTGATGCATTTTGAAAGTTCAAATACCC
*
9395838 -AATTGAGTGTAAAAAAAAAAGA
65 GAA-TGAGTGCAAAAAAAAAAGA
* ** * *
9395860 GCTTAATTGTTTTTTTTTTAAACATTTGAGGGCCATTTTGATGCATTTTGAAAGTTCAAATACCC
1 GCTTAATTGCTTTTTTTGAAAAAATTTGA-GGCCTTTTTGATGCATTTTGAAAGTTCAAATACCC
**
9395925 GAATGAGTGCAAAAAAAAGGGA
65 GAATGAGTGCAAAAAAAAAAGA
* *
9395947 -CTTAATTGCTTTTTTTTGAAAAAGTTTGAGGGCTTTTTG
1 GCTTAATTGC-TTTTTTTGAAAAAATTTGAGGCCTTTTTG
9395986 CACCCTTAAG
Statistics
Matches: 102, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
86 16 0.16
87 83 0.81
88 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (86 bp):
GCTTAATTGCTTTTTTTGAAAAAATTTGAGGCCTTTTTGATGCATTTTGAAAGTTCAAATACCCG
AATGAGTGCAAAAAAAAAAGA
Found at i:9396668 original size:2 final size:2
Alignment explanation
Indices: 9396656--9396696 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
9396646 AAGTTGTATT
*
9396656 TA TA AA TA TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9396696 T
1 T
9396697 TTAAATACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9397793 original size:9 final size:9
Alignment explanation
Indices: 9397779--9397806 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9397769 CTATCCCTAT
9397779 AAAATAATA
1 AAAATAATA
9397788 AAAATAATA
1 AAAATAATA
9397797 AAAATAATA
1 AAAATAATA
9397806 A
1 A
9397807 TAGTATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAATAATA
Found at i:9397960 original size:18 final size:18
Alignment explanation
Indices: 9397937--9397974 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
9397927 CTTCATTTAG
9397937 TTACTTTTTAACAATGTC
1 TTACTTTTTAACAATGTC
9397955 TTACTTTTTAACAATGTC
1 TTACTTTTTAACAATGTC
9397973 TT
1 TT
9397975 GTAATTTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.53
Consensus pattern (18 bp):
TTACTTTTTAACAATGTC
Found at i:9401729 original size:2 final size:2
Alignment explanation
Indices: 9401722--9401755 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9401712 ACACATAAGA
9401722 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9401756 TAAAACATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9404038 original size:70 final size:70
Alignment explanation
Indices: 9403901--9404146 Score: 251
Period size: 70 Copynumber: 3.5 Consensus size: 70
9403891 TAAAAAGCTT
* * ** ** * *
9403901 AACTCACCTTTCGCAAGATGAGTCAATTTTCTAAACATAAACTAAAAATACCTCAACATGCCCGA
1 AACTCACCTCTCGCAATATGAGTTGATTTTAGAAACATAAACTAAAAATACCTCAACGTGCCTGA
9403966 GGCTC
66 GGCTC
* * * *
9403971 AACTCACCTCTCGCAATATGAGTTGATTTT-GGAACATAAACTGAAATTACCTCAACGTGTCTTG
1 AACTCACCTCTCGCAATATGAGTTGATTTTAGAAACATAAACTAAAAATACCTCAACGTG-CCTG
9404035 AGGCTC
65 AGGCTC
* * * * * *
9404041 AACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAATGCCTCAGCGTGAC
1 AACTCACCTCTCGCAATATGAGTTGATTTTAGAAAC-ATA--AACTAAAAATACCTCAACGTG-C
*
9404106 CTGAGGCTT
62 CTGAGGCTC
* *
9404115 GACTCACCTCTCGCAATATGAGTTGGTTTTAG
1 AACTCACCTCTCGCAATATGAGTTGATTTTAG
9404147 GAAAGTAAAA
Statistics
Matches: 145, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
69 24 0.17
70 63 0.43
71 4 0.03
72 2 0.01
74 52 0.36
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (70 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTAGAAACATAAACTAAAAATACCTCAACGTGCCTGA
GGCTC
Found at i:9404183 original size:14 final size:14
Alignment explanation
Indices: 9404164--9404190 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9404154 AAAATTTAAA
9404164 AACAGAATTTGAAT
1 AACAGAATTTGAAT
9404178 AACAGAATTTGAA
1 AACAGAATTTGAA
9404191 AATACCTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (14 bp):
AACAGAATTTGAAT
Found at i:9404338 original size:54 final size:52
Alignment explanation
Indices: 9404212--9404367 Score: 178
Period size: 54 Copynumber: 3.0 Consensus size: 52
9404202 ATGTAACCCG
* *
9404212 AGGCTCAACTCACTTCTCGCAATATGGGTTGATTTTTTTTGAAAAAC--AA--AA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAATTAA
*
9404263 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAAACAGAAATTAA
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG-AATTAA
*
9404316 CAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAGGAATT
1 -AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-GAATT
9404368 GGAAAGTAGA
Statistics
Matches: 91, Mismatches: 5, Indels: 15
0.82 0.05 0.14
Matches are distributed among these distances:
48 12 0.13
50 1 0.01
51 29 0.32
53 2 0.02
54 45 0.49
55 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (52 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAATTAA
Found at i:9404653 original size:73 final size:73
Alignment explanation
Indices: 9404553--9404857 Score: 296
Period size: 74 Copynumber: 4.2 Consensus size: 73
9404543 AGAGAATTTG
* * * * *
9404553 AAAATACCTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAGC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAC
*
9404618 ATAAATTG
66 ATAAATTA
* * * * * *
9404626 AAATTACTTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTGAAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAC
*
9404689 AACAGGAATTA
66 -ATA--AATTA
* * ** * *
9404700 AAAACACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAG-TCAATTTTTTGAAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAC
*
9404764 ATAAACTA
66 ATAAATTA
** *
9404772 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGA--TTTTTGAA
1 AAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-A
*
9404835 AACATGAATTA
63 AACATAAATTA
*
9404846 AAGATACCTCAG
1 AAAATACCTCAG
9404858 AGTACCCAAA
Statistics
Matches: 187, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
71 9 0.05
72 21 0.11
73 51 0.27
74 94 0.50
75 12 0.06
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (73 bp):
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAC
ATAAATTA
Found at i:9417285 original size:2 final size:2
Alignment explanation
Indices: 9417278--9417309 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9417268 ACACATAAGA
9417278 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9417310 TAAAACATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9417443 original size:24 final size:24
Alignment explanation
Indices: 9417415--9417472 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
9417405 TAAGTAATGA
** * *
9417415 ATAAATATAATGAAAATAGTAAAT
1 ATAAATATAAAAAAAAAAGAAAAT
*
9417439 ATAAAAATAAAAAAAAAAGAAAAT
1 ATAAATATAAAAAAAAAAGAAAAT
9417463 ATAATATATA
1 ATAA-ATATA
9417473 CACAAAAACT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (24 bp):
ATAAATATAAAAAAAAAAGAAAAT
Found at i:9421026 original size:51 final size:50
Alignment explanation
Indices: 9420951--9421088 Score: 126
Period size: 45 Copynumber: 2.8 Consensus size: 50
9420941 TTATTGATCA
* * *
9420951 GGCAC-TTATGTGCCGACTACTGTTACTATTACCGTTACTGTTACCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTATTA-CGTTACTGTTACCGATTC
* *
9421001 GGCACTTTGTGTGTCGAATACTG-T--TATT--GTTACCGTTATCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTATTACGTTACTGTTACCGATTC
** * * *
9421046 AACACTTTGTGTGTTGAATACTGTTACTGTTACTATTACTGTT
1 GGCACTTTGTGTGTCGAATACTGTTACTATTAC-GTTACTGTT
9421089 CCAGATTTGT
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
45 35 0.50
46 1 0.01
48 7 0.10
50 6 0.09
51 21 0.30
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (50 bp):
GGCACTTTGTGTGTCGAATACTGTTACTATTACGTTACTGTTACCGATTC
Found at i:9421052 original size:45 final size:45
Alignment explanation
Indices: 9420974--9421078 Score: 138
Period size: 45 Copynumber: 2.3 Consensus size: 45
9420964 CGACTACTGT
* * * **
9420974 TACTATTACCGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACCGTTACCGATTCAACACTTTGTGTGTCGAA
* * *
9421019 TACTGTTATTGTTACCGTTATCGATTCAACACTTTGTGTGTTGAA
1 TACTGTTACTGTTACCGTTACCGATTCAACACTTTGTGTGTCGAA
9421064 TACTGTTACTGTTAC
1 TACTGTTACTGTTAC
9421079 TATTACTGTT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACCGTTACCGATTCAACACTTTGTGTGTCGAA
Found at i:9421275 original size:18 final size:18
Alignment explanation
Indices: 9421252--9421547 Score: 227
Period size: 18 Copynumber: 16.1 Consensus size: 18
9421242 AAAGGTATAA
*
9421252 AATAATTGATTATTACTG
1 AATAATTGATTGTTACTG
** *
9421270 AATAATTGCCTGTTACCG
1 AATAATTGATTGTTACTG
*
9421288 AATAATTGACTGTTACTG
1 AATAATTGATTGTTACTG
* * *
9421306 GATAATAGACTGTTACTG
1 AATAATTGATTGTTACTG
* * *
9421324 AATAACTGAATATTACTG
1 AATAATTGATTGTTACTG
**
9421342 AATAATTGATCATTACTG
1 AATAATTGATTGTTACTG
*
9421360 AATAATTGATTGTCACTG
1 AATAATTGATTGTTACTG
* * *
9421378 AATAAATGACTATTACTG
1 AATAATTGATTGTTACTG
* *
9421396 AATAACTTCATTGCTACTG
1 AATAA-TTGATTGTTACTG
* *
9421415 AATATTTGATT-TTACTA
1 AATAATTGATTGTTACTG
9421432 AATAATTGATTGTTACTAG
1 AATAATTGATTGTTACT-G
* *
9421451 ATAACCAATCAATTGATCGATACTG
1 ------AAT-AATTGATTGTTACTG
* * *
9421476 AATAATTGGTTATTATTG
1 AATAATTGATTGTTACTG
*
9421494 AATAATTGATTGTTACCG
1 AATAATTGATTGTTACTG
*
9421512 AATAAATGATTGTTACTG
1 AATAATTGATTGTTACTG
* *
9421530 AATAAATAATTGTT-CTG
1 AATAATTGATTGTTACTG
9421547 A
1 A
9421548 TTGTTAATGA
Statistics
Matches: 220, Mismatches: 48, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
17 18 0.08
18 171 0.78
19 15 0.07
25 4 0.02
26 12 0.05
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.39
Consensus pattern (18 bp):
AATAATTGATTGTTACTG
Found at i:9429768 original size:11 final size:11
Alignment explanation
Indices: 9429752--9429799 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
9429742 CTTTATGTAC
9429752 TAATAAAATAA
1 TAATAAAATAA
*
9429763 TAATAAAATATCT
1 TAATAAAATA--A
* *
9429776 TATTAAAATAT
1 TAATAAAATAA
9429787 TAATAAAATAA
1 TAATAAAATAA
9429798 TA
1 TA
9429800 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:9433702 original size:20 final size:20
Alignment explanation
Indices: 9433677--9433716 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9433667 TTAACAAACT
9433677 TTTAATTATAATATAATATA
1 TTTAATTATAATATAATATA
* *
9433697 TTTAATTATCATATTATATA
1 TTTAATTATAATATAATATA
9433717 AATTATTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAATTATAATATAATATA
Found at i:9433824 original size:25 final size:24
Alignment explanation
Indices: 9433795--9433841 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
9433785 ATATGTTATA
*
9433795 ATTATATATTATATATAAAAATAAT
1 ATTATATAATATAT-TAAAAATAAT
*
9433820 ATTATATAATATATTAGAAATA
1 ATTATATAATATATTAAAAATA
9433842 TAAAAACAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
ATTATATAATATATTAAAAATAAT
Found at i:9446082 original size:23 final size:24
Alignment explanation
Indices: 9446039--9446090 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
9446029 AACAAATACT
* *
9446039 TATTTTATAGTATTAAAATATTCA
1 TATTTTATACTATTAAAATATTAA
9446063 TATTTTATACTA-TAAAATATTAA
1 TATTTTATACTATTAAAATATTAA
9446086 TATTT
1 TATTT
9446091 GAATTTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
TATTTTATACTATTAAAATATTAA
Found at i:9455655 original size:20 final size:20
Alignment explanation
Indices: 9455630--9455672 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
9455620 GAATTTAATC
9455630 AAATAATATGATATTAATTT
1 AAATAATATGATATTAATTT
9455650 AAATAATATGATATTAATTT
1 AAATAATATGATATTAATTT
9455670 AAA
1 AAA
9455673 ATATGACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
AAATAATATGATATTAATTT
Found at i:9456607 original size:28 final size:29
Alignment explanation
Indices: 9456576--9456636 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 29
9456566 TATATATATA
9456576 TATTAAC-ATAAGACATAACAAGTTTCAT
1 TATTAACTATAAGACATAACAAGTTTCAT
9456604 TATT-ACTATAAGACATAACAAGTTTCAT
1 TATTAACTATAAGACATAACAAGTTTCAT
9456632 TATTA
1 TATTA
9456637 CTAGAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (29 bp):
TATTAACTATAAGACATAACAAGTTTCAT
Found at i:9456637 original size:28 final size:28
Alignment explanation
Indices: 9456583--9456639 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
9456573 ATATATTAAC
9456583 ATAAGACATAACAAGTTTCATTATTACT
1 ATAAGACATAACAAGTTTCATTATTACT
9456611 ATAAGACATAACAAGTTTCATTATTACT
1 ATAAGACATAACAAGTTTCATTATTACT
9456639 A
1 A
9456640 GAAATTAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (28 bp):
ATAAGACATAACAAGTTTCATTATTACT
Found at i:9459771 original size:32 final size:32
Alignment explanation
Indices: 9459731--9459883 Score: 225
Period size: 32 Copynumber: 4.8 Consensus size: 32
9459721 AAAAAATATG
* *
9459731 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
9459763 ATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
9459795 ATACATTAGGTTCACATATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
9459827 ATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
9459859 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGTTTTACATATAAAAAA
9459884 CTAGCATAGT
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 105 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (32 bp):
ATACATTAGTTTTACATATAAAAAAGTAGATC
Found at i:9459816 original size:64 final size:64
Alignment explanation
Indices: 9459731--9459883 Score: 252
Period size: 64 Copynumber: 2.4 Consensus size: 64
9459721 AAAAAATATG
* *
9459731 ATACATTAGGTTTACGTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
* * *
9459795 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
*
9459859 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGGTTTACATATAAAAAA
9459884 CTAGCATAGT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 82 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (64 bp):
ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
Found at i:9462208 original size:18 final size:19
Alignment explanation
Indices: 9462173--9462208 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
9462163 ATGATATTAA
9462173 TGATATACCTACAAGGTAG
1 TGATATACCTACAAGGTAG
9462192 TGATATACCTA-AAGGTA
1 TGATATACCTACAAGGTA
9462209 TGAAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (19 bp):
TGATATACCTACAAGGTAG
Found at i:9462533 original size:61 final size:61
Alignment explanation
Indices: 9462433--9462568 Score: 211
Period size: 61 Copynumber: 2.2 Consensus size: 61
9462423 GTCTATCACA
*
9462433 GAACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTT-C
1 GAACTCAGATCAAAAGAAATTATTAAGATGAAACCTATAAAAAAACACTAAAGAGTTTTCC
* * * *
9462493 GAAACTCAGATCAAAAGACATTATTGAGATGAAACTTATAAAAAAACAGTAAAGAGTTTTCC
1 G-AACTCAGATCAAAAGAAATTATTAAGATGAAACCTATAAAAAAACACTAAAGAGTTTTCC
9462555 GAACTCAGATCAAA
1 GAACTCAGATCAAA
9462569 CTCAGATCAA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
60 1 0.01
61 66 0.96
62 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (61 bp):
GAACTCAGATCAAAAGAAATTATTAAGATGAAACCTATAAAAAAACACTAAAGAGTTTTCC
Found at i:9464733 original size:25 final size:22
Alignment explanation
Indices: 9464681--9464733 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 22
9464671 AAAAAAAACT
9464681 AAAATTAATAATAGAAAATGAA
1 AAAATTAATAATAGAAAATGAA
*
9464703 AGAAATTAACTAATATTAAAATGATA
1 A-AAATTAA-TAATA-GAAAATGA-A
9464729 AAAAT
1 AAAAT
9464734 AAATTTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.04
23 7 0.27
24 5 0.19
25 11 0.42
26 2 0.08
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.26
Consensus pattern (22 bp):
AAAATTAATAATAGAAAATGAA
Found at i:9468049 original size:13 final size:14
Alignment explanation
Indices: 9468025--9468053 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9468015 AGGGTTTAAA
9468025 TAAAAATATAAATT
1 TAAAAATATAAATT
9468039 TAAAAAT-TAAATT
1 TAAAAATATAAATT
9468052 TA
1 TA
9468054 TTTTCTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAAAATATAAATT
Found at i:9474228 original size:12 final size:12
Alignment explanation
Indices: 9474211--9474237 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9474201 AAGAAGAAGC
9474211 TTTCAATTTTAA
1 TTTCAATTTTAA
9474223 TTTCAATTTTAA
1 TTTCAATTTTAA
9474235 TTT
1 TTT
9474238 GTCACTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTCAATTTTAA
Found at i:9475686 original size:18 final size:18
Alignment explanation
Indices: 9475659--9475693 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9475649 TATTTATGAG
*
9475659 AAAAATGAAATAAAAAAT
1 AAAAAGGAAATAAAAAAT
9475677 AAAAAGGAAATAAAAAA
1 AAAAAGGAAATAAAAAA
9475694 AGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAAAGGAAATAAAAAAT
Found at i:9476426 original size:11 final size:11
Alignment explanation
Indices: 9476394--9476432 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
9476384 AATTATTCTC
9476394 AAAATATTAATT
1 AAAA-ATTAATT
*
9476406 AATTAATTAATT
1 AA-AAATTAATT
9476418 AAAAATTAATT
1 AAAAATTAATT
9476429 AAAA
1 AAAA
9476433 TAATAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 12 0.50
12 11 0.46
13 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATTAATT
Found at i:9476439 original size:23 final size:23
Alignment explanation
Indices: 9476394--9476444 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
9476384 AATTATTCTC
*
9476394 AAAATATTAATTAATTAATTAATT
1 AAAATATTAATTAAATAATTAA-T
9476418 AAAA-ATTAATTAAAATAA-TAAT
1 AAAATATTAATT-AAATAATTAAT
9476440 AAAAT
1 AAAAT
9476445 TTCTCAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
22 5 0.21
23 10 0.42
24 9 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
AAAATATTAATTAAATAATTAAT
Found at i:9476567 original size:16 final size:16
Alignment explanation
Indices: 9476546--9476578 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9476536 GAACAAATGC
9476546 ATCTACCGCGAACAGT
1 ATCTACCGCGAACAGT
9476562 ATCTACCGCGAACAGT
1 ATCTACCGCGAACAGT
9476578 A
1 A
9476579 ATTCATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.18
Consensus pattern (16 bp):
ATCTACCGCGAACAGT
Found at i:9488344 original size:54 final size:54
Alignment explanation
Indices: 9488279--9488381 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
9488269 TTTGATGGTG
* *
9488279 TTGAGCTTCCTGCTGGAGAAGATACATCCATCCCATGGTTTGAAAATATGACCA
1 TTGAGCTTCCTGATGGAGAAGAGACATCCATCCCATGGTTTGAAAATATGACCA
* ** *
9488333 TTGAGGTTCCTGATGGATTAGAGGCATCCATCCCATGGTTTGAAAATAT
1 TTGAGCTTCCTGATGGAGAAGAGACATCCATCCCATGGTTTGAAAATAT
9488382 TTCAGAGAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (54 bp):
TTGAGCTTCCTGATGGAGAAGAGACATCCATCCCATGGTTTGAAAATATGACCA
Found at i:9503969 original size:18 final size:18
Alignment explanation
Indices: 9503946--9503992 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
9503936 CGAAAATGCC
*
9503946 ATTTTAGTAAACTAAAAT
1 ATTTTATTAAACTAAAAT
9503964 ATTTTATTAAACTAAAAT
1 ATTTTATTAAACTAAAAT
9503982 ATTTTATTAAA
1 ATTTTATTAAA
9503993 ACAAGGGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTTTATTAAACTAAAAT
Found at i:9505647 original size:29 final size:28
Alignment explanation
Indices: 9505610--9505675 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
9505600 AATTTACCTC
*
9505610 TTAATATTTGT-AAAATAACATTTTTATTT
1 TTAAAATTTGTCAAAATAA-ATTTTT-TTT
* *
9505639 TTAAAATTTTGTCAAATTTAATTTTTTTT
1 TTAAAA-TTTGTCAAAATAAATTTTTTTT
9505668 TTAAAATT
1 TTAAAATT
9505676 CTATAGATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 2 0.06
29 14 0.44
30 11 0.34
31 5 0.16
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (28 bp):
TTAAAATTTGTCAAAATAAATTTTTTTT
Found at i:9510165 original size:21 final size:21
Alignment explanation
Indices: 9510118--9510165 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
9510108 AAAATATTAC
*
9510118 AAATTATTTTATATAAAATTT
1 AAATAATTTTATATAAAATTT
* *
9510139 ATATAATTTTATGATTAAA-TT
1 AAATAATTTTAT-ATAAAATTT
9510160 AAATAA
1 AAATAA
9510166 AATTTATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
AAATAATTTTATATAAAATTT
Found at i:9512660 original size:25 final size:26
Alignment explanation
Indices: 9512614--9512662 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
9512604 ACGTCACTTC
*
9512614 TATATTTTTTATTTCTCATATTATCT
1 TATATTTTATATTTCTCATATTATCT
9512640 TATA-TTTATATTTC-CATTATTAT
1 TATATTTTATATTTCTCA-TATTAT
9512663 ACCATATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 15 0.71
26 4 0.19
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (26 bp):
TATATTTTATATTTCTCATATTATCT
Found at i:9518411 original size:148 final size:149
Alignment explanation
Indices: 9518108--9519682 Score: 2083
Period size: 150 Copynumber: 10.5 Consensus size: 149
9518098 ATATAAATTT
* * * *
9518108 AAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTCTTGCAGTATGAGT
1 AAAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
9518172 TG-A-TTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
64 TGAATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
9518235 GCAATATGAGTTGATTTTTTTG
129 GCAATATGAGTTGA-TTTTTTG
* *
9518257 ACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
9518322 AATTTTTTTGAAAAATATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 AATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
*
9518387 AATATGAGTTGA-ATTTTG
131 AATATGAGTTGATTTTTTG
* **
9518405 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
9518470 AATTTTTTTG-AAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAATCATTTCTCGC
66 AATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
*
9518534 AATATGAGTTGATTTTTTTT
131 AATATGAGTTGA-TTTTTTG
* *
9518554 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAGTATGAGTT
1 AA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9518619 G-A-TTTTTTGAAAGAA-AAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
65 GAATTTTTTTGAAA-AATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
9518681 GCAATATGAGTTGATTTTTTTG
129 GCAATATGAGTTGA-TTTTTTG
*
9518703 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
9518768 AATTTTTTTGAAAAATATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCAC
66 AATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
*
9518833 AATATGAGTTGA-ATTTTG
131 AATATGAGTTGATTTTTTG
* **
9518851 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * *
9518916 AATTTTTTTG-AAAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCATTTCTCGC
66 AATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
*
9518980 AATATGAGTTGATTTTTTTT
131 AATATGAGTTGA-TTTTTTG
*
9519000 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTT
1 AA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
9519065 G-ATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCG
65 GAATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCG
9519129 CAATATGAGTTGATTTTTTTG
130 CAATATGAGTTGA-TTTTTTG
* *
9519150 ACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
9519215 AA-TTTTTTGAAAAATATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 AATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
*
9519279 AATATGAGTTGA-ATTTTG
131 AATATGAGTTGATTTTTTG
* * * *
9519297 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * ** *
9519361 TTGATTTTTGAATCTTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCAC
63 TTGAATTTT---T-TTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCAT
*
9519426 CTCTCGCAATATGAGTTGA-TTTTTG
124 TTCTCGCAATATGAGTTGATTTTTTG
* * *
9519451 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTA
1 -AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT-
* *** * *
9519516 AAGACA-TAAATTG----ATCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
64 -TGA-ATTTTTTTGAAAAAT-AAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
9519576 CTCGCAATATGAGTTGATTTTTTTTTG
126 CTCGCAATATGAGTTGA---TTTTTTG
* * ** * * *
9519603 AAAAGCAGAAACTGAAAATACCTCAATGTATCTTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9519668 GATTTTTTTTTGAAA
65 GA-ATTTTTTTGAAA
9519683 CAGAAATAAA
Statistics
Matches: 1260, Mismatches: 127, Indels: 73
0.86 0.09 0.05
Matches are distributed among these distances:
147 147 0.12
148 325 0.26
149 263 0.21
150 331 0.26
151 11 0.01
152 59 0.05
153 34 0.03
154 65 0.05
155 25 0.02
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (149 bp):
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
AATTTTTTTGAAAAATAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
AATATGAGTTGATTTTTTG
Found at i:9518517 original size:75 final size:75
Alignment explanation
Indices: 9518108--9519689 Score: 1881
Period size: 75 Copynumber: 21.1 Consensus size: 75
9518098 ATATAAATTT
* * * ** * *
9518108 AAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTCTTGCAGTATGAGT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGCAATATGAGT
9518172 TG-A-TTTTTTG
64 TGAATTTTTTTG
* * *
9518182 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9518247 G-ATTTTTTTG
65 GAATTTTTTTG
* * * **
9518257 ACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
9518322 AATTTTTTTG
66 AATTTTTTTG
* * * *
9518332 AAAAATATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9518397 GAA---TTTTG
65 GAATTTTTTTG
* *
9518405 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
9518470 AATTTTTTTG
66 AATTTTTTTG
* * *
9518480 AAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAATCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
9518545 -ATTTTTTTT
66 AATTTTTTTG
* ** * *
9518554 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAGTATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9518619 G-A-TTTTTTG
65 GAATTTTTTTG
* * * *
9518628 AAAGAAAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9518693 G-ATTTTTTTG
65 GAATTTTTTTG
* * **
9518703 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
9518768 AATTTTTTTG
66 AATTTTTTTG
* * * * *
9518778 AAAAATATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9518843 GAA---TTTTG
65 GAATTTTTTTG
* *
9518851 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
9518916 AATTTTTTTG
66 AATTTTTTTG
* *
9518926 AAAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
9518991 -ATTTTTTTT
66 AATTTTTTTG
* ** *
9519000 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9519065 G-ATTTTTTTG
65 GAATTTTTTTG
* * *
9519075 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9519140 G-ATTTTTTTG
65 GAATTTTTTTG
* * * **
9519150 ACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
9519215 AA-TTTTTTG
66 AATTTTTTTG
* * * *
9519224 AAAAATATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9519289 GAA---TTTTG
65 GAATTTTTTTG
* * * **
9519297 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAG
*
9519361 TTGATTTTTGAATCTTG
63 TTGAATTTT---T-TTG
* * * * **
9519378 AAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
9519443 G-A--TTTTTG
65 GAATTTTTTTG
* *
9519451 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTA
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGT-
* ***
9519516 AAGACA-TAAATTG
64 -TGA-ATTTTTTTG
* * *
9519529 --ATCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
9519592 ATTTTTTTTTG
66 A-ATTTTTTTG
* ** * * * **
9519603 AAAAGCAGAAACTGAAAATACCTCAATGTATCTTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
*
9519668 GATTTTTTTTTG
65 GA-ATTTTTTTG
9519680 -AAACAGAAAT
1 AAAACAGAAAT
9519690 AAAAACATCA
Statistics
Matches: 1318, Mismatches: 148, Indels: 83
0.85 0.10 0.05
Matches are distributed among these distances:
72 142 0.11
73 77 0.06
74 352 0.27
75 491 0.37
76 120 0.09
77 70 0.05
78 3 0.00
79 2 0.00
80 37 0.03
81 6 0.00
82 18 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (75 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTTTTG
Found at i:9518647 original size:446 final size:446
Alignment explanation
Indices: 9517824--9519682 Score: 2714
Period size: 446 Copynumber: 4.1 Consensus size: 446
9517814 ATACGTGCCT
* * * * *
9517824 TGAGGCTCAACTTACCTCTCGCAGTATGAGTTG-A-TTTTTTGAAAGACAAAAATTGAAAATACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
* * * *
9517887 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----ATTTTGAAAACAGAA
* * *
9517952 ATTGAAATTACCTCAGCTTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTT
126 ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTTT
* *
9518017 TGACAACAGAAATTGAAATTACCTCAGCTTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
190 TGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
9518082 TGAATTTTTTTAAAAAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGG
255 TG-A-TTTTTT------T-T--A---AAAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGG
* *
9518146 CTCAACTTACCTCTTGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCAT
304 CTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCAT
9518211 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTA
369 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTA
9518276 CCTCAGCATGTCC
434 CCTCAGCATGTCC
9518289 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
9518354 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
9518419 AATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTGAAAA
131 AATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTGAAAA
* * **
9518484 TAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAATCATTTCTCGCAATATGAGTTGATTT
196 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
9518549 TTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAGTAT
261 TTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTAT
*
9518614 GAGTTGATTTTTTGAAAGAAAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTC
326 GAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTC
*
9518679 TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCC
391 TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCC
9518735 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
*
9518800 TCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
9518865 AATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTGAAAA
131 AATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTGAAAA
* **
9518930 CAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
196 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
9518995 TTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTAT
261 TTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTAT
9519060 GAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
326 GAGTTGA-TTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
* *
9519125 CTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAACGTGTCC
390 CTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCC
9519182 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTTGAAAAATATAAATTGAAAATACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
9519246 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
* * ** * ** *
9519311 AAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAATCT
131 AATTACCTCA--GCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT---T-T
* * *
9519376 TGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
190 TGAAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
9519440 GTTGA--TTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
253 GTTGATTTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * ***** * * *
9519503 CGCAATATGAG-TAAAGACAT-AAATTGATCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
318 CGCAGTATGAGTTGATTTTTTGAAA--GA-CAAAAATTGAAAATACCTCAGCATGTCTTGAGGCT
* * *
9519566 CAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAACTGAAAATACCTCA--A
380 CAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTGACAA-CAGAAATTGAAATTACCTCAGCA
*
9519629 TGTATCT
442 TG--TCC
* *
9519636 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTTTTGAAA
9519683 CAGAAATAAA
Statistics
Matches: 1305, Mismatches: 67, Indels: 53
0.92 0.05 0.04
Matches are distributed among these distances:
446 597 0.46
447 152 0.12
448 44 0.03
449 1 0.00
450 5 0.00
451 123 0.09
452 9 0.01
453 66 0.05
454 55 0.04
456 10 0.01
459 6 0.00
460 1 0.00
461 67 0.05
462 68 0.05
465 31 0.02
466 1 0.00
467 69 0.05
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (446 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAATACC
TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
AATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTGAAAA
CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTAT
GAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTC
TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCC
Done.