Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 370 of 427
Found at i:107450284 original size:11 final size:10
Alignment explanation
Indices: 107450256--107450289 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
107450246 AGCCTGTAAG
107450256 TATTCTGAAT
1 TATTCTGAAT
*
107450266 TTTTCTGAAT
1 TATTCTGAAT
107450276 ATATTCTGAAT
1 -TATTCTGAAT
107450287 TAT
1 TAT
107450290 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:107455632 original size:5 final size:5
Alignment explanation
Indices: 107455619--107455653 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
107455609 TGTTGTGCCG
*
107455619 TTTTT TTTTC TTTTC TGTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC T-TTTC TTTTC TTTTC TTTT
107455654 TTCTCTCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:107456781 original size:28 final size:28
Alignment explanation
Indices: 107456741--107456805 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
107456731 ATGTACTAGA
*
107456741 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
107456769 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
107456797 ATACCCCTA
1 ATACCCCTA
107456806 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:107456977 original size:26 final size:27
Alignment explanation
Indices: 107456911--107456999 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
107456901 AGGAAGCGTC
107456911 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
107456939 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
107456966 -TGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
107456994 CTGGTG
1 CTGGTG
107457000 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 14 0.26
27 17 0.32
28 17 0.32
29 5 0.09
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:107465258 original size:68 final size:67
Alignment explanation
Indices: 107465149--107465350 Score: 287
Period size: 68 Copynumber: 3.0 Consensus size: 67
107465139 AATCTACTCT
** * *
107465149 GCTGAAACTTCAAGGAGATCTACTATGGCTTTGAGCCGCTCCAACGCCATTTCAGGGTGAAGAGA
1 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTT-AGCCGCTCCAACGCCATTTCAGGGAGAAGAGA
107465214 TCC
65 TCC
** *
107465217 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAATTCCATTTCAGGGAAAAGAGA
1 GCTGAAACTTCAAGGAGATCTGTTGTGGCTT-TAGCCGCTCCAACGCCATTTCAGGGAGAAGAGA
107465282 TCC
65 TCC
* * *
107465285 GCTGAAACTTTAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGGGAAGAGA
1 GCTGAAACTTCAAGGAGATCTGTTGTGGC-TTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGA
107465350 T
65 T
107465351 TTGTAGCTTC
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
68 116 0.97
69 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (67 bp):
GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
CC
Found at i:107465411 original size:43 final size:44
Alignment explanation
Indices: 107465364--107465954 Score: 206
Period size: 43 Copynumber: 13.6 Consensus size: 44
107465354 TAGCTTCAGC
* *
107465364 CTGTTACCCTACTATTTAGGGGGTTAAGGCCAT-TGCCTTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCCATGTGACTTCGAT
* * * * * ** * * * *
107465407 CTGTTTCCTTACTGCTTAGGGTGATAAGATC-TGTAAATTCAAC
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCCATGTGACTTCGAT
* * * **
107465450 CTGTTACCCTACTGCTTA-GGGGTTAAGGCCCAT-CGCCTTTAAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGG-CCATGTGACTTCGAT
* * ** * * **
107465493 CTGTTTCCCTACTGCTTAGGGTGG-TAAGATC-TGTAAATTCGGC
1 CTGTTACCCTACTACTTAGGG-GGTTAAGGCCATGTGACTTCGAT
* **
107465536 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAG-CTTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGG-CCATGTGACTTCGAT
* * ** * * *
107465580 CTGTTTCCCTACTACTTAGGGGGTTACGATC-TGTAAATTC-AGC
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCCATGTGACTTCGA-T
* * *
107465623 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCA--TCATCTTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGG-CCATGTGA-CTTCGAT
* * * ** * * *
107465667 CTGTTTCCCTACTGCTTAGGGGGTTGAGATC-TGTAAATTC-AGC
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCCATGTGACTTCGA-T
* * *
107465710 CTGTTACCCAACTACTTAGGGGTTTAAGGCGC-T-TCGCCTTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGGC-CATGT-GACTTCGAT
* * * * * * * *
107465754 CTGTTTCCCTACTGCTTAAGGTGATAA-G--ATTGTAAATTC-AGC
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCCA-TGTGACTTCGA-T
* * *
107465796 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCA--TCACATTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGG-CCATGTGAC-TTCGAT
* * ** * * *
107465840 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTC-AGC
1 CTGTTACCCTACTACTTAGGGGGTTAAGGCCATGTGACTTCGA-T
* * *
107465883 CTGTTACCCTACTACTTAGAGGTTTAAGGCCCA--TCACCTTCGAT
1 CTGTTACCCTACTACTTAGGGGGTTAAGG-CCATGTGA-CTTCGAT
* *
107465927 CTGTTTCCCTACTGCTTAGGGGGTTAAG
1 CTGTTACCCTACTACTTAGGGGGTTAAG
107465955 ATCTGTAAAT
Statistics
Matches: 386, Mismatches: 124, Indels: 75
0.66 0.21 0.13
Matches are distributed among these distances:
41 1 0.00
42 40 0.10
43 185 0.48
44 152 0.39
45 7 0.02
46 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (44 bp):
CTGTTACCCTACTACTTAGGGGGTTAAGGCCATGTGACTTCGAT
Found at i:107465612 original size:87 final size:87
Alignment explanation
Indices: 107465358--107466000 Score: 942
Period size: 87 Copynumber: 7.4 Consensus size: 87
107465348 GATTTGTAGC
* * * *
107465358 TTCAGCCTGTTACCCTACTATTTAGGGGGTTAAGG-CCAT-TGCCTTCGATCTGTTTCCTTACTG
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAG-CTTCGATCTGTTTCCCTACTG
* *
107465421 CTTAGGGTGATAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * **
107465444 TTCAACCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCATC-GCCTTTAATCTGTTTCCCTACTG
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAG-CTTCGATCTGTTTCCCTACTG
107465507 CTTAGGGTGG-TAAGATCTGTAAA
65 CTTAGGG-GGTTAAGATCTGTAAA
* *
107465530 TTCGGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAGCTTCGATCTGTTTCCCTACTAC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAGCTTCGATCTGTTTCCCTACTGC
*
107465595 TTAGGGGGTTACGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
107465617 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAGCTTCGATCTGTTTCCCTACTGC
*
107465682 TTAGGGGGTTGAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * *
107465704 TTCAGCCTGTTACCCAACTACTTAGGGGTTTAAGGCGCTTC-GCCTTCGATCTGTTTCCCTACTG
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAG-CTTCGATCTGTTTCCCTACTG
* * *
107465768 CTTAAGGTGATAAGAT-TGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
*
107465790 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCA-CATTCGATCTGTTTCCCTACTG
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAGC-TTCGATCTGTTTCCCTACTG
107465854 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* *
107465877 TTCAGCCTGTTACCCTACTACTTAGAGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAGCTTCGATCTGTTTCCCTACTGC
107465942 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
107465964 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCC
107466001 TGTGGCTTCA
Statistics
Matches: 505, Mismatches: 41, Indels: 21
0.89 0.07 0.04
Matches are distributed among these distances:
85 7 0.01
86 172 0.34
87 324 0.64
88 2 0.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (87 bp):
TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAGCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:107465791 original size:173 final size:173
Alignment explanation
Indices: 107465358--107466000 Score: 999
Period size: 173 Copynumber: 3.7 Consensus size: 173
107465348 GATTTGTAGC
* * * *
107465358 TTCAGCCTGTTACCCTACTATTTAGGGGGTTAAGG-CCATTGCCTTCGATCTGTTTCCTTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
* * *
107465422 TTAGGGTGATAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCATCGC
66 TTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATC-A
**
107465486 CTTTAATCTGTTTCCCTACTGCTTAGGGTGG-TAAGATCTGTAAA
130 CTTCGATCTGTTTCCCTACTGCTTAGGG-GGTTAAGATCTGTAAA
* *
107465530 TTCGGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCAG-CTTCGATCTGTTTCCCTACTA
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATC-GCCTTCGATCTGTTTCCCTACTG
* *
107465594 CTTAGGGGGTTACGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCA
65 CTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCA
*
107465659 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTGAGATCTGTAAA
130 -CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* * *
107465704 TTCAGCCTGTTACCCAACTACTTAGGGGTTTAAGGCGCTTCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
* *
107465769 TTAAGGTGATAAGAT-TGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCAC
66 TTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCAC
107465833 ATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
131 -TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* *
107465877 TTCAGCCTGTTACCCTACTACTTAGAGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
* *
107465942 TTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
66 TTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
107466001 TGTGGCTTCA
Statistics
Matches: 430, Mismatches: 33, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
172 33 0.08
173 235 0.55
174 162 0.38
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (173 bp):
TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCAC
TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
Found at i:107465800 original size:260 final size:261
Alignment explanation
Indices: 107465358--107466000 Score: 1024
Period size: 260 Copynumber: 2.5 Consensus size: 261
107465348 GATTTGTAGC
* * ** *
107465358 TTCAGCCTGTTACCCTACTATTTAGGGGGTTAAGG-CCATTGCCTTCGATCTGTTTCCTTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
* * *
107465422 TTAGGGTGATAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCATCGC
66 TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC
* * * *
107465486 CTTTAATCTGTTTCCCTACTGCTTAGGGTGGTAAGATCTGTAAATTCGGCCTGTTACCCTACTAC
131 CTTCAATCTGTTTCCCTACTGCTTAAGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTAC
*
107465551 TTAGGGGTTTAAGGCCCATCAGC-TTCGATCTGTTTCCCTACTACTTAGGGGGTTACGATCTGTA
196 TTAGGGGTTTAAGGCCCATCA-CATTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTA
107465615 AA
260 AA
* *
107465617 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
* * * * *
107465682 TTAGGGGGTTGAGATCTGTAAATTCAGCCTGTTACCCAACTACTTAGGGGTTTAAGGCGCTTCGC
66 TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC
* *
107465747 CTTCGATCTGTTTCCCTACTGCTTAAGGTGATAAGAT-TGTAAATTCAGCCTGTTACCCTACTGC
131 CTTCAATCTGTTTCCCTACTGCTTAAGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTAC
*
107465811 TTAGGGGTTTAAGGCCCATCACATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAA
196 TTAGGGGTTTAAGGCCCATCACATTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAA
107465876 A
261 A
*
107465877 TTCAGCCTGTTACCCTACTACTTAGAGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
*
107465942 TTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
66 TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
107466001 TGTGGCTTCA
Statistics
Matches: 350, Mismatches: 31, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
259 33 0.09
260 272 0.78
261 45 0.13
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (261 bp):
TTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC
CTTCAATCTGTTTCCCTACTGCTTAAGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTAC
TTAGGGGTTTAAGGCCCATCACATTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAA
A
Found at i:107466171 original size:64 final size:64
Alignment explanation
Indices: 107466070--107466197 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
107466060 TCATGTATCT
*
107466070 ATGCTTATGCCAAATAATTAGGATACTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* * *
107466134 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
107466198 TTATGAATGT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:107466936 original size:26 final size:26
Alignment explanation
Indices: 107466854--107466936 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
107466844 GCATAGCTCA
* * *
107466854 AAATGAATAAATTAATCAAAGATTGC
1 AAATGAATAAGTTAATCAAATATAGC
* *
107466880 AAATGCAATAAG--AATGAAAT-TAAC
1 AAATG-AATAAGTTAATCAAATATAGC
107466904 TTAAAATGAATAAGTTAATCAAATATAGC
1 ---AAATGAATAAGTTAATCAAATATAGC
107466933 AAAT
1 AAAT
107466937 TCAAAATGGG
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
24 2 0.05
25 6 0.14
26 15 0.35
27 10 0.23
28 7 0.16
29 3 0.07
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (26 bp):
AAATGAATAAGTTAATCAAATATAGC
Found at i:107469833 original size:46 final size:46
Alignment explanation
Indices: 107469773--107470184 Score: 700
Period size: 46 Copynumber: 9.0 Consensus size: 46
107469763 TTTGACATGA
* * * * * *
107469773 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
107469819 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
107469865 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
107469911 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
107469957 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
107470003 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
107470049 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
107470095 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTAATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
107470141 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
107470185 AGAGCACACT
Statistics
Matches: 352, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
45 4 0.01
46 348 0.99
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:107472689 original size:30 final size:30
Alignment explanation
Indices: 107472622--107472689 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
107472612 CACCCTAAAA
* * *
107472622 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
107472652 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
107472681 AGTATTTAC
1 A-TATTTAC
107472690 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:107474471 original size:9 final size:10
Alignment explanation
Indices: 107474458--107474503 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
107474448 GAGAAAGTCT
107474458 AATGCAAAT-
1 AATGCAAATG
107474467 AATGC-AATG
1 AATGCAAATG
107474476 CAATGCAAATG
1 -AATGCAAATG
*
107474487 CATG-AAATG
1 AATGCAAATG
107474496 AATGCAAA
1 AATGCAAA
107474504 AGAAAGATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:107474482 original size:19 final size:19
Alignment explanation
Indices: 107474458--107474503 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
107474448 GAGAAAGTCT
*
107474458 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGAAATG
*
107474476 CAATGCAAATGCATGAAATG
1 -AATGCAAATGAATGAAATG
107474496 AATGCAAA
1 AATGCAAA
107474504 AGAAAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGAAATG
Found at i:107478107 original size:6 final size:6
Alignment explanation
Indices: 107478096--107478282 Score: 172
Period size: 6 Copynumber: 30.8 Consensus size: 6
107478086 AACCAAAATG
*
107478096 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
107478144 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-ATGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
107478193 AGAATC AGTAA-C AGAATC AGAATC AAAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
107478241 TGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
107478283 GTGAATGCAA
Statistics
Matches: 149, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 12 0.08
6 123 0.83
7 10 0.07
8 4 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:107478111 original size:30 final size:29
Alignment explanation
Indices: 107478075--107478282 Score: 187
Period size: 30 Copynumber: 7.1 Consensus size: 29
107478065 AAGAAACATT
* *
107478075 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGGAA-CAGAATCAGAATCAGA
* *
107478105 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGGAACAGAATCAGAATCAGA
*
107478135 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GGAACAGAATCAGAATCAGA
*
107478165 ATCAGAATTAGATGACAGAATCAGAATCAGA
1 ATCAGAATTGGA--ACAGAATCAGAATCAGA
*
107478196 ATCAG---T--AACAGAATCAGAATCAAA
1 ATCAGAATTGGAACAGAATCAGAATCAGA
* * *
107478220 ATCAGTATTAGTAACAGAATCTGAATCAGA
1 ATCAGAATT-GGAACAGAATCAGAATCAGA
107478250 ATCAGAATTACGTG-ACAGAATCAGAATCAGA
1 ATCAGAATT--G-GAACAGAATCAGAATCAGA
107478281 AT
1 AT
107478283 GTGAATGCAA
Statistics
Matches: 150, Mismatches: 14, Indels: 27
0.79 0.07 0.14
Matches are distributed among these distances:
24 21 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 79 0.53
31 45 0.30
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGGAACAGAATCAGAATCAGA
Found at i:107478196 original size:85 final size:85
Alignment explanation
Indices: 107478096--107478282 Score: 331
Period size: 85 Copynumber: 2.2 Consensus size: 85
107478086 AACCAAAATG
*
107478096 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAAAATCAATATTAGTAACAGAATCAGAAT
107478161 CAGAATCAGAATTA-GATGAC
66 CAGAATCAGAATTACG-TGAC
* *
107478181 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAAAATCAGTATTAGTAACAGAATCTGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAAAATCAATATTAGTAACAGAATCAGAAT
107478246 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
107478266 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
107478283 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
85 97 0.99
86 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAAAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:107478437 original size:27 final size:26
Alignment explanation
Indices: 107478400--107478465 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
107478390 AGCATGGCTG
*
107478400 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
107478426 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
*
107478453 CCAAAATCAGATA
1 CCAGAA-CAGATA
107478466 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:107478686 original size:22 final size:22
Alignment explanation
Indices: 107478638--107478696 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
107478628 GTAAATACGT
*
107478638 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
107478660 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
107478682 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
107478697 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:107478863 original size:27 final size:26
Alignment explanation
Indices: 107478784--107478866 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
107478774 TCGATCGGTC
* * *
107478784 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
107478810 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
107478837 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
107478864 AAC
1 AAC
107478867 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:107479095 original size:27 final size:27
Alignment explanation
Indices: 107479065--107479260 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
107479055 GGGGCAAAAT
* * * *
107479065 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
107479092 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107479119 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
107479146 GATAGTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
107479173 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
107479200 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
107479227 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
107479254 AGTAATT
1 GGTAATT
107479261 TCACAATCAA
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:107479295 original size:27 final size:27
Alignment explanation
Indices: 107479265--107479755 Score: 634
Period size: 27 Copynumber: 18.2 Consensus size: 27
107479255 GTAATTTCAC
* * *
107479265 AATCAAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
107479292 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
107479319 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * **
107479346 AATCAAGAGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
107479373 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
107479400 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
107479427 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
107479454 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
107479481 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * *
107479508 AATCGAGGATAAAACAGTAATTTTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
107479535 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
107479562 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
107479589 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
107479616 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
107479643 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
107479670 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
107479697 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
107479724 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
107479751 AATCG
1 AATCG
107479756 GGAGTACTTT
Statistics
Matches: 409, Mismatches: 43, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.02
27 391 0.96
28 9 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:107482239 original size:21 final size:23
Alignment explanation
Indices: 107482208--107482249 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
107482198 TGATGTATGC
*
107482208 GTATTGAGTTA-TAATATGCAAT
1 GTATTGAGTTAGTAAAATGCAAT
107482230 GTATT-AGTTAGTAAAATGCA
1 GTATTGAGTTAGTAAAATGCA
107482250 TGTCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (23 bp):
GTATTGAGTTAGTAAAATGCAAT
Found at i:107484670 original size:55 final size:54
Alignment explanation
Indices: 107484583--107484836 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
107484573 ATTAAGGTTT
*
107484583 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
107484638 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
107484693 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATT-GTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
107484745 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
107484794 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
107484837 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 21, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
49 40 0.24
51 5 0.03
52 35 0.21
53 9 0.05
54 13 0.08
55 64 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:107484779 original size:107 final size:110
Alignment explanation
Indices: 107484590--107484789 Score: 318
Period size: 107 Copynumber: 1.8 Consensus size: 110
107484580 TTTAAGGATA
*
107484590 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
107484655 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
107484700 CCATGTAAGACCATGCCAAGGCATGGC-ATT-GTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
107484761 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
107484790 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
106 3 0.04
107 48 0.57
108 3 0.04
109 3 0.04
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:107490178 original size:190 final size:190
Alignment explanation
Indices: 107489831--107490329 Score: 600
Period size: 190 Copynumber: 2.6 Consensus size: 190
107489821 AGAATTACTG
* * * *
107489831 AAATATCCTTGGTTTACAAAATTACTA-AAATACCCTCGA-TTAGCAAAATTACCA-AAATACTC
1 AAATATCCTTGATTTAAAAAATTAC-AGAAATACCCCCGATTTA-CAAAATTA-CAGAAATACCC
** ** ** ** ** * *
107489893 TT-GGTTTGTAAAATTACCA-AAATACCCCTAATTTGTGAAATTATCGAAATACCCTTAACTTGT
63 TTAACTTTCAAAAATTA-CAGAAATACCATTGGTTTGCAAAATTATCGAAATACCCTTGACCTGT
* * * * * *
107489956 AAAATTATCGAAATACCCTCGAATTATAAAATTATCGAAATACCCTTAATTTGGAAAATTATCG
127 AAAATTACCGAAATACCCTCGAATTATAAAATTACCAAAATACCCCTAATTTGGAAAATTACCA
*
107490020 AAATA-CCTTTGATTTAAAAAATTACAGAAATACCCCCGATTTATAAAATTACAGAAATACCCTT
1 AAATATCC-TTGATTTAAAAAATTACAGAAATACCCCCGATTTACAAAATTACAGAAATACCCTT
* *
107490084 GACTTTCAAAAATTACAGAAATACTATTGGTTTGCAAAATTATCGAAATACCCTTGACCTGTAAA
65 AACTTTCAAAAATTACAGAAATACCATTGGTTTGCAAAATTATCGAAATACCCTTGACCTGTAAA
*
107490149 ATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTACCA
130 ATTACCGAAATACCCTCGAA-TTATAAAATTACCAAAATACCCCTAATTTGGAAAATTACCA
** * * *
107490210 AAATATCCTTGATTTGGAAAATTACAGAAATTCCTCTGATTTACAAAATTACAGAAATACCCTTA
1 AAATATCCTTGATTTAAAAAATTACAGAAATACCCCCGATTTACAAAATTACAGAAATACCCTTA
107490275 ACTTTCAAAAATTACAGAAATACCATTGGTTTGCAAAATTA-CTGAAATACCCTTG
66 ACTTTCAAAAATTACAGAAATACCATTGGTTTGCAAAATTATC-GAAATACCCTTG
107490330 GTTTGTAGAT
Statistics
Matches: 268, Mismatches: 33, Indels: 17
0.84 0.10 0.05
Matches are distributed among these distances:
188 5 0.02
189 52 0.19
190 209 0.78
191 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (190 bp):
AAATATCCTTGATTTAAAAAATTACAGAAATACCCCCGATTTACAAAATTACAGAAATACCCTTA
ACTTTCAAAAATTACAGAAATACCATTGGTTTGCAAAATTATCGAAATACCCTTGACCTGTAAAA
TTACCGAAATACCCTCGAATTATAAAATTACCAAAATACCCCTAATTTGGAAAATTACCA
Found at i:107490330 original size:27 final size:27
Alignment explanation
Indices: 107489823--107490334 Score: 302
Period size: 27 Copynumber: 18.9 Consensus size: 27
107489813 TGTAGGGTAG
* * *
107489823 AATTACTGAAATATCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * *
107489850 AATTACTAAAATACCCTCGATTAGCAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * * *
107489877 AATTACCAAAATACTCTTGGTTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * * **
107489904 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACTGAAATACCCTTGATTTGCAA
* * *
107489931 AATTA-TCGAAATACCCTTAACTTGTAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* * **
107489958 AATTA-TCGAAATACCCTCGAATTATAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* *
107489985 AATTA-TCGAAATACCCTTAATTTGGAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* **
107490012 AATTA-TCGAAATACCTTTGATTTAAAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* ** **
107490039 AATTACAGAAATACCCCCGATTTATAA
1 AATTACTGAAATACCCTTGATTTGCAA
*
107490066 AATTACAGAAATACCCTTGACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTGC-AA
* ** *
107490094 AATTACAGAAATACTATTGGTTTGCAA
1 AATTACTGAAATACCCTTGATTTGCAA
** *
107490121 AATTA-TCGAAATACCCTTGACCTGTAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* ** *
107490148 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * * *
107490175 AATTACCAAAATACCCCTAATTTGGAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * *
107490202 AATTACCAAAATATCCTTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * *
107490229 AATTACAGAAAT-TCCTCTGATTTACAA
1 AATTACTGAAATACCCT-TGATTTGCAA
* *
107490256 AATTACAGAAATACCCTTAACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTGC-AA
* * *
107490284 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACTGAAATACCCTTGATTTGCAA
*
107490311 AATTACTGAAATACCCTTGGTTTG
1 AATTACTGAAATACCCTTGATTTG
107490335 TAGATTTTCC
Statistics
Matches: 397, Mismatches: 76, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.01
27 344 0.87
28 49 0.12
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGCAA
Found at i:107490628 original size:41 final size:41
Alignment explanation
Indices: 107490583--107490704 Score: 190
Period size: 41 Copynumber: 3.0 Consensus size: 41
107490573 GGAGGAAGAA
*
107490583 ATTGAGGATTGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
107490624 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * * *
107490665 ATTAAGGATCGTATGGTTACTTGACGATCGTGGATCCACC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
107490705 AGTGGCTTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:107491146 original size:22 final size:22
Alignment explanation
Indices: 107491114--107491167 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
107491104 GTTGTTGTGA
107491114 TGTTTACGGCTATGTGCTATCC
1 TGTTTACGGCTATGTGCTATCC
* *
107491136 TGTTTATGGCTATGTGCTGTCC
1 TGTTTACGGCTATGTGCTATCC
*
107491158 TGTCTACGGC
1 TGTTTACGGC
107491168 GTTAAGCCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.11, C:0.22, G:0.26, T:0.41
Consensus pattern (22 bp):
TGTTTACGGCTATGTGCTATCC
Found at i:107501488 original size:22 final size:22
Alignment explanation
Indices: 107501433--107501476 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
107501423 TGTTATGGTA
*
107501433 AAAGCATATGTGTGAAAAAGAT
1 AAAGTATATGTGTGAAAAAGAT
107501455 AAAGTATATGTGTGAAAAAGAT
1 AAAGTATATGTGTGAAAAAGAT
107501477 GTGGTATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.02, G:0.23, T:0.25
Consensus pattern (22 bp):
AAAGTATATGTGTGAAAAAGAT
Found at i:107502120 original size:12 final size:12
Alignment explanation
Indices: 107502103--107502128 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
107502093 CATACTCAAG
107502103 AGCTTCAAGAGT
1 AGCTTCAAGAGT
107502115 AGCTTCAAGAGT
1 AGCTTCAAGAGT
107502127 AG
1 AG
107502129 TTCTTTTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (12 bp):
AGCTTCAAGAGT
Found at i:107513303 original size:353 final size:346
Alignment explanation
Indices: 107512636--107513614 Score: 1160
Period size: 353 Copynumber: 2.8 Consensus size: 346
107512626 AGGCGGTCAA
* *
107512636 GTATCTTCTATATGGAA-TTGTTATATCAATGTATTATGAATCCATTTGAGAAGAAGCCTGATTC
1 GTATCTTCTATATGGAACTT-TTATATTAATGTATTATGAATCCATTTGA-AAAAAGCCTGATTC
* *
107512700 AAGTTTACTGCTACCAGATGTCAATCGATA-TTTGA-TGAGGGGAATCCTCAAGACATTGTCTCT
64 AAGTTTACTACTACCAGATGTCAATCGATACTTT-ACAGAGGGGAATCCTCAAGACATTGTCTCT
* * *
107512763 GCCTCCAACAGAAGTAAGAATACTGCAACGCCGGTAGGAGAAAAACAACCATCATCTTCAAATTT
128 GCCTCCAACAGAAGTAACAATACTGCAACGCCGATAGGAGAACAACAACCATCATCTTCAAATTT
* * * *
107512828 GGATTCAGTAGTAGCAAGTAACGATCAGCCTC-AGAATGGCTTCAATTTAGGTGCAATAGATCAT
193 GGATTCAGTAGTAGCAAATAACAATCAGCCTCAAG-ATGGCTTCAATTTAGGTGCGACAGATCAT
** * * * * * * *
107512892 TTGATCCAATAGTTGATAGGAGGAGAACTACCATCAGAACCGTTTGCATTTTTAACTTCAACCAT
257 CCGACCCAAGAGTTGATAGGAGGAGAACTACCATCAAAACCATTTGAAATTCTAACTTCAACCAT
*
107512957 TGTTGATGGTGAAATCATTTTCCTAGATGAAG
322 TG-T-A-GATG--ATCA--TTCCTAGATGAAG
* **
107512989 GTATCTTCTATATCGAACTTTTATATTAATGTATTATGAATCTGTTTGAAACAAAGCCTGATTCA
1 GTATCTTCTATATGGAACTTTTATATTAATGTATTATGAATCCATTTGAAA-AAAGCCTGATTCA
* * * * *
107513054 AGTTTACTTCTACCATATGTCAATCGATACTTTACAG-GGGGAATCATCAAAACATTGTCACTGC
65 AGTTTACTACTACCAGATGTCAATCGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTGC
* * * * * ** * *
107513118 CTGCAATAGAAGTAACAATATTGCAACGCCGATAAGAGAACATCAATTATCGTCTTCGAATTTGG
130 CTCCAACAGAAGTAACAATACTGCAACGCCGATAGGAGAACAACAACCATCATCTTCAAATTTGG
** * * * * * *
107513183 ATTCAACAGTAGAAAATAACAATTAGCCTCAAGATAGCTTTAATTTAGGTGTGACATATCATCCG
195 ATTCAGTAGTAGCAAATAACAATCAGCCTCAAGATGGCTTCAATTTAGGTGCGACAGATCATCCG
*
107513248 ACCCAAGAGTTGATAGGGGGAGAA-TAACCATCAAAACCATTTGAAATTCTAACTTCAACCATTG
260 ACCCAAGAGTTGATAGGAGGAGAACT-ACCATCAAAACCATTTGAAATTCTAACTTCAACCATTG
* *
107513312 TAGATGATGATTCCTAGATGAAT
324 TAGATGATCATTCCTAGATGAAG
* * * * *
107513335 GTATCTTCTATATGGAACTATTATATTAATGTGTTATGGATCCATTTTAAAAGAAGTCTGATTCA
1 GTATCTTCTATATGGAACTTTTATATTAATGTATTATGAATCCATTTGAAAA-AAGCCTGATTCA
* * * *
107513400 AGTTTACTACTACCAGATGTTAATCGATACTTTACAGAGGGGAATCCTCAAGACATTATCTTTAC
65 AGTTTACTACTACCAGATGTCAATCGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTGC
* * * * * *
107513465 CTTCAACAGAAGTAGCAATACTACAATGTCGATAGGAGAACAACAACCATCATCTTCAAATTTGC
130 CTCCAACAGAAGTAACAATACTGCAACGCCGATAGGAGAACAACAACCATCATCTTCAAATTTGG
* * * * * *
107513530 ATTTAGTAGTAGCAAATAAAAATCAGCCTTAGGATGGCTTCAATTTAGTTGCGACAGATCATCCA
195 ATTCAGTAGTAGCAAATAACAATCAGCCTCAAGATGGCTTCAATTTAGGTGCGACAGATCATCCG
107513595 ACCCAAGAGTTGATAGGAGG
260 ACCCAAGAGTTGATAGGAGG
107513615 CCATTGTCGA
Statistics
Matches: 524, Mismatches: 94, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
345 1 0.00
346 101 0.19
347 142 0.27
348 3 0.01
350 3 0.01
351 1 0.00
352 4 0.01
353 261 0.50
354 8 0.02
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (346 bp):
GTATCTTCTATATGGAACTTTTATATTAATGTATTATGAATCCATTTGAAAAAAGCCTGATTCAA
GTTTACTACTACCAGATGTCAATCGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTGCC
TCCAACAGAAGTAACAATACTGCAACGCCGATAGGAGAACAACAACCATCATCTTCAAATTTGGA
TTCAGTAGTAGCAAATAACAATCAGCCTCAAGATGGCTTCAATTTAGGTGCGACAGATCATCCGA
CCCAAGAGTTGATAGGAGGAGAACTACCATCAAAACCATTTGAAATTCTAACTTCAACCATTGTA
GATGATCATTCCTAGATGAAG
Found at i:107514226 original size:670 final size:662
Alignment explanation
Indices: 107512953--107514284 Score: 1576
Period size: 670 Copynumber: 2.0 Consensus size: 662
107512943 TTAACTTCAA
* * * * * * *
107512953 CCATTGTTGATGGTGAAATCATTTTCCTAGATGAAGGTATCTTCTATATCGAACTTTTATATTAA
1 CCATTGTCGATGGTGAAATCATTTTACTAGATGAAGGCATATTCTATATCGAACTGTAATATCAA
* ** * * *
107513018 TGTATTATGAATCTGTTTGAAACAAAGCCTGATTCAAGTTTACTTCTACCATATGTCAATCGATA
66 TGTATTATAAATCAATTTGAAACAAAGCCTGATTCAAGTTTACTACTACCAGATGTCAAACGATA
* *
107513083 CTTTACAGGGGGAATCATCAAAACATTGTCACTGCCTGCAATAGAAGTAACAATATTGCAACGCC
131 CTTTACAGGGGGAATCATCAAAACATTGTCACTGCCTCCAATAGAAGTAACAATATTGAAACGCC
* * * * * *
107513148 GATAAGAGAACATCAATTATCGTCTTCGAATTTGGATTCAACAGTAGAAAATAACAATTAGCCTC
196 GATAAGAGAACATCAATCATCATATTCAAATTTGGATTCAACAGTAGAAAATAACAATCAACCTC
* * * * * * *
107513213 AAGATAGCTTTAATTTAGGTGTGACATATCATCCGACCCAAGAGTTGATAGGGGGAGAATAACCA
261 AAGATAGATTCAATTTAGGTGTGACAGATCATCCGACCCAAGAATTGATAAGGAGAGAACAACCA
*
107513278 TCAAAACCATTTGAAATTCTAACTTCAACCATTGTAGATGATGATTCCTAGATGAATGTATCTTC
326 TCAAAACCATTTGAAATTCTAACTTCAACAATTGTAGATGATGATTCCTAGATGAATGTATCTTC
* * **
107513343 TATATGGAACTATTATATTAATGTGTTATGGATCCATTTTAAAAGAAGTCTGATTCAAGTTTACT
391 TATATGGAACTATTATATAAATGTGTTATGAATCCATTTTAAAAGAACCCTGATTCAAGTTTACT
* * *
107513408 ACTACCAGATGTTAATCGATACTTTACAGAGGGGAATCCTCAAGACATTATCTTTACCTTCAACA
456 ACTACCAGATGTCAATCGATACTTTACAGAGGGGAATCCTCAAGACATTATCTCTACCTCCAACA
* * * *
107513473 GAAGTAGCAATACTACAATGTCGATAGGAGAACAACAACCATCATCTTCAAATTTGCATTTAGTA
521 GAAGTAGCAATACTACAACGTCGATAGGAGAACAACAACCATCATCTTAAAATTTGCATTCAGCA
* * * *
107513538 GTAGCAAATAAAAATCAGCCTTAGGATGGCTTCAATTTAGTTGCGACAGATCATCCAACCCAAGA
586 GTAGCAAATAAAAATCAGCCTCAAGATGGCTTCAATTTAGGTACGACAGATCATCCAACCCAAGA
*
107513603 GTTGATAGGAGG
651 CTTGATAGGAGG
* *
107513615 CCATTGTCGATGGTGAAAT-AGTTTTACTAGCTGAAGGCATATTTTATAT-GCAACTGTAATATC
1 CCATTGTCGATGGTGAAATCA-TTTTACTAGATGAAGGCATATTCTATATCG-AACTGTAATATC
*
107513678 AATGTATTATAAATCAATTTGAAA-AGAAGCCTGATTCAAGTTTACTACTATCAGATGTCAAACG
64 AATGTATTATAAATCAATTTGAAACA-AAGCCTGATTCAAGTTTACTACTACCAGATGTCAAACG
* * * * ** ** *
107513742 ATGCTTTGCAGAGGGGAATCCTTATGACATTGTGTCTGCCTCCAATAGAAGTAGCAATATTGAAA
128 ATACTTTACAG-GGGGAATCATCAAAACATTGTCACTGCCTCCAATAGAAGTAACAATATTGAAA
*** * * * *
107513807 TTTCGATAGGAGAACATCAATCATCATATTCAAATTTGGATTCAGCAGTAGCAGATAACAATCAA
192 CGCCGATAAGAGAACATCAATCATCATATTCAAATTTGGATTCAACAGTAGAAAATAACAATCAA
* * * * *
107513872 CCTCATGATGGATTCAATTTAGGTGT-AGCAGATTATCCGACCTAAGAATTTATAAGGAGAGAAC
257 CCTCAAGATAGATTCAATTTAGGTGTGA-CAGATCATCCGACCCAAGAATTGATAAGGAGAGAAC
* * ** * * * *
107513936 AACCATTAGAACCATTTTCATTTCTAACTTCAACAATTGTCGATTGTGAAATAGTTTTCCTGGAT
321 AACCATCAAAACCATTTGAAATTCTAACTTCAACAATTGTAGA---TG--AT-G-ATTCCTAGAT
* ** * * *
107514001 GAATGTATCTTCTTTATGGATTTTTTATATAAATGTTTTCTGAATCC-TTTTGAAAAGAACCCTG
379 GAATGTATCTTCTATATGGAACTATTATATAAATGTGTTATGAATCCATTTT-AAAAGAACCCTG
* * * * ** * * *
107514065 ATTCAAGTTTACTATTACCATATGTCAGTTGATACTTTGTAGAGGGGAATCCTTAAGACATTGTG
443 ATTCAAGTTTACTACTACCAGATGTCAATCGATACTTTACAGAGGGGAATCCTCAAGACATTATC
* * ** **
107514130 TCTGCCTCCAATAGAAGTAGCAATACTGTAACGTCGATAGGAGAACAACAACCATTGTCTTAAAA
508 TCTACCTCCAACAGAAGTAGCAATACTACAACGTCGATAGGAGAACAACAACCATCATCTTAAAA
* * * *
107514195 TTTGGATTCAGCAGTAGCAAATAACAATCAGCCTCAAGATGGTTTCAATTTAGGTATGACAGATC
573 TTTGCATTCAGCAGTAGCAAATAAAAATCAGCCTCAAGATGGCTTCAATTTAGGTACGACAGATC
* *
107514260 ATTCGACCCAAGACTTGATAGGAGG
638 ATCCAACCCAAGACTTGATAGGAGG
107514285 AGAACTACCA
Statistics
Matches: 553, Mismatches: 104, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
661 3 0.01
662 115 0.21
663 182 0.33
666 2 0.00
668 2 0.00
669 5 0.01
670 244 0.44
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (662 bp):
CCATTGTCGATGGTGAAATCATTTTACTAGATGAAGGCATATTCTATATCGAACTGTAATATCAA
TGTATTATAAATCAATTTGAAACAAAGCCTGATTCAAGTTTACTACTACCAGATGTCAAACGATA
CTTTACAGGGGGAATCATCAAAACATTGTCACTGCCTCCAATAGAAGTAACAATATTGAAACGCC
GATAAGAGAACATCAATCATCATATTCAAATTTGGATTCAACAGTAGAAAATAACAATCAACCTC
AAGATAGATTCAATTTAGGTGTGACAGATCATCCGACCCAAGAATTGATAAGGAGAGAACAACCA
TCAAAACCATTTGAAATTCTAACTTCAACAATTGTAGATGATGATTCCTAGATGAATGTATCTTC
TATATGGAACTATTATATAAATGTGTTATGAATCCATTTTAAAAGAACCCTGATTCAAGTTTACT
ACTACCAGATGTCAATCGATACTTTACAGAGGGGAATCCTCAAGACATTATCTCTACCTCCAACA
GAAGTAGCAATACTACAACGTCGATAGGAGAACAACAACCATCATCTTAAAATTTGCATTCAGCA
GTAGCAAATAAAAATCAGCCTCAAGATGGCTTCAATTTAGGTACGACAGATCATCCAACCCAAGA
CTTGATAGGAGG
Found at i:107514297 original size:354 final size:354
Alignment explanation
Indices: 107513617--107514615 Score: 1266
Period size: 354 Copynumber: 2.8 Consensus size: 354
107513607 ATAGGAGGCC
* * * * * * * * * *
107513617 ATTGTCGATGGTGAAATAGTTTTACTAGCTGAAGGCATATTTTATATGCAACTGTAATATCAATG
1 ATTGTCGATTGTGAAATAGTTTTCCTGGATGAAGGTATATTCTATATGGAATTGTTATATAAATG
* * ** * * * * *
107513682 TATTATAAATCAATTTGAAAAGAAGCCTGATTCAAGTTTACTACTATCAGATGTCAAACGATGCT
66 TTTTATGAATCCTTTTGAAAAGAACCCTGATTCAAGTTTACTACTACCATATGTCAATCGATACT
* * * **
107513747 TTGCAGAGGGGAATCCTTATGACATTGTGTCTGCCTCCAATAGAAGTAGCAATATTGAAATTTCG
131 TTGTAGAGGGGAATCCTTAAGACATTGTGTCTGCCTCCAATAGAAGTAGCAATACTGAAACGTCG
* * * * * *
107513812 ATAGGAGAACATCAATCATCATATTCAAATTTGGATTCAGCAGTAGCAGATAACAATCAACCTCA
196 ATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAATCAGCCTCA
* * * * * *
107513877 TGATGGATTCAATTTAGGTGT-AGCAGATTATCCGACCTAAGAATTTATAAGGAGAGAACAACCA
261 AGATGGTTTCAATTTAGGTATGA-CAGATCATCCGACCCAAGAATTGATAAGGAGAGAACAACCA
*
107513941 TTAGAACCATTT-TCATTTCTAACTTCAACA
325 TTAGAACCATTTGT-ATTCCTAACTTCAACA
* * * * *
107513971 ATTGTCGATTGTGAAATAGTTTTCCTGGATGAATGTATCTTCTTTATGGATTTTTTATATAAATG
1 ATTGTCGATTGTGAAATAGTTTTCCTGGATGAAGGTATATTCTATATGGAATTGTTATATAAATG
* * * *
107514036 TTTTCTGAATCCTTTTGAAAAGAACCCTGATTCAAGTTTACTATTACCATATGTCAGTTGATACT
66 TTTTATGAATCCTTTTGAAAAGAACCCTGATTCAAGTTTACTACTACCATATGTCAATCGATACT
*
107514101 TTGTAGAGGGGAATCCTTAAGACATTGTGTCTGCCTCCAATAGAAGTAGCAATACTGTAACGTCG
131 TTGTAGAGGGGAATCCTTAAGACATTGTGTCTGCCTCCAATAGAAGTAGCAATACTGAAACGTCG
* *
107514166 ATAGGAGAACAACAACCATTGTCTTAAAATTTGGATTCAGCAGTAGCAAATAACAATCAGCCTCA
196 ATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAATCAGCCTCA
* * *
107514231 AGATGGTTTCAATTTAGGTATGACAGATCATTCGACCCAAGACTTGAT-AGGAGGAGAACTACCA
261 AGATGGTTTCAATTTAGGTATGACAGATCATCCGACCCAAGAATTGATAAGGA-GAGAACAACCA
* * *
107514295 TTAGAAGCATTTGTATTCCTAATTTTAACA
325 TTAGAACCATTTGTATTCCTAACTTCAACA
* * * *
107514325 ATTGTTGATTGTGAAATAGTTTTCTTGTATGAAGGTATATTCTATGTGGAATTGTTATATAAATG
1 ATTGTCGATTGTGAAATAGTTTTCCTGGATGAAGGTATATTCTATATGGAATTGTTATATAAATG
* *
107514390 TTTTATGAATCCTTTTCAAAAGAACCCTGATTCATGTTTACTACTACCATATGTCAATCGATACT
66 TTTTATGAATCCTTTTGAAAAGAACCCTGATTCAAGTTTACTACTACCATATGTCAATCGATACT
* * * * * * *
107514455 TTATAGAGGGGAATCCTCAAGACATTTTGTTTGCCTCCAACAGAAGTAGGAATACTGCAACGTCG
131 TTGTAGAGGGGAATCCTTAAGACATTGTGTCTGCCTCCAATAGAAGTAGCAATACTGAAACGTCG
* * ** * *
107514520 ATAAGAGAAAAACAACCATCGTCTTCAAATTTAAATTCAGTAGTAGCAAATAACAATCAGCCTTA
196 ATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAATCAGCCTCA
* *
107514585 AAATGGTTTCAATTTAGCTATGACAGATCAT
261 AGATGGTTTCAATTTAGGTATGACAGATCAT
107514616 GTAACACCCC
Statistics
Matches: 555, Mismatches: 87, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
353 4 0.01
354 549 0.99
355 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (354 bp):
ATTGTCGATTGTGAAATAGTTTTCCTGGATGAAGGTATATTCTATATGGAATTGTTATATAAATG
TTTTATGAATCCTTTTGAAAAGAACCCTGATTCAAGTTTACTACTACCATATGTCAATCGATACT
TTGTAGAGGGGAATCCTTAAGACATTGTGTCTGCCTCCAATAGAAGTAGCAATACTGAAACGTCG
ATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAATCAGCCTCA
AGATGGTTTCAATTTAGGTATGACAGATCATCCGACCCAAGAATTGATAAGGAGAGAACAACCAT
TAGAACCATTTGTATTCCTAACTTCAACA
Found at i:107514728 original size:31 final size:31
Alignment explanation
Indices: 107514693--107514757 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
107514683 AATAGCATAC
107514693 ATAACTCATACATTTATGCATTTATACTCAA
1 ATAACTCATACATTTATGCATTTATACTCAA
107514724 ATAACTCATACATTTATGCATTTATACTCAA
1 ATAACTCATACATTTATGCATTTATACTCAA
107514755 ATA
1 ATA
107514758 CCATTCAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.38
Consensus pattern (31 bp):
ATAACTCATACATTTATGCATTTATACTCAA
Found at i:107516178 original size:48 final size:48
Alignment explanation
Indices: 107516112--107516244 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
107516102 ATCAATTGAT
* *
107516112 AAGTAACTATACTG-TGGCCC-ATAGCCAAATCAAGGTAACTTATCCT-TG
1 AAGTACCTATAC-GATGGCCCGA-AGCCAAATCAAGGCAACTTA-CCTCTG
* *
107516160 GAGTACCTATACGATGGCCCGAAGCCAAATCAAGGCAATTTACCTCTG
1 AAGTACCTATACGATGGCCCGAAGCCAAATCAAGGCAACTTACCTCTG
* * * *
107516208 AAGTGCCAATACCATGGCCCGAAGCTAAATCAAGGCA
1 AAGTACCTATACGATGGCCCGAAGCCAAATCAAGGCA
107516245 TAAATCACAC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 4 0.05
48 68 0.93
49 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACGATGGCCCGAAGCCAAATCAAGGCAACTTACCTCTG
Found at i:107516392 original size:11 final size:11
Alignment explanation
Indices: 107516358--107516413 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
107516348 TTCAATACCA
*
107516358 AATCATAGTCG
1 AATCATTGTCG
*
107516369 AATCATT-TGG
1 AATCATTGTCG
*
107516379 AATTATTGTCG
1 AATCATTGTCG
*
107516390 AATCGTTGTCG
1 AATCATTGTCG
* *
107516401 TATCATGGTCG
1 AATCATTGTCG
107516412 AA
1 AA
107516414 CAAGTTCGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (11 bp):
AATCATTGTCG
Found at i:107518181 original size:354 final size:354
Alignment explanation
Indices: 107517531--107519789 Score: 2277
Period size: 354 Copynumber: 6.4 Consensus size: 354
107517521 TCGGGCTGTT
* * * * * *
107517531 ACAGATCATCCGACCCAAGACTTGATAGGAGGAAAACAACCTTTAGAACCATCTT-CATTACTAT
1 ACAGATCATCCGACCCAAGAGTTGATAAGAGGAGAACAACCATTAGAACCAT-TTGCATTTCTAA
* * * * * * * *
107517595 CTTCAACCTTTTTCGACGGTGAAATAGCTTTCCTGGATGGATGTATCTTCTATATGGAACTGTTA
65 CTTCAACCATTGTCGATGGTGAAATAGTTTTCCTTGATGAATGTATATTTTATATGGAACTGTTA
* * * * * * * * *
107517660 TGTCAATGTACTATGTA-CCATTTTAAAAAGAAGCATGGTTCAAGTTTGCCACTACCAGATGTCA
130 TATCAATGTATTATGAATCTA-TTTGAAAAGAAGCTTGATTCAAGTTTACTACTACCAGATGTCA
* * * * * * * *
107517724 ATCGATACTTAGTAGAGGGGAATCCTTAAGACATTGTCTCTGCCTTCAACATAAGTAGGAATACT
194 ATCGATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATACT
* * * * * * * *
107517789 GCAACGTTGATATGAGAAAAACAACCATCGACTTCAAATTTGAATTCAGTAGTAGAAAATAATAA
259 GCAACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAA
* * * * * *
107517854 TCAGCTTGAAGATGGTTTCAAATTACGTGCA
324 TCAGCCTCAAGATGGCTTCAATTTAGGTGCG
* * *
107517885 ACAGATCATCCAACCCAAGAGTTGATAAGAGGAGAACTACTATTAGAACCATTTGCATTTCTAAC
1 ACAGATCATCCGACCCAAGAGTTGATAAGAGGAGAACAACCATTAGAACCATTTGCATTTCTAAC
* * *
107517950 ATCAACCATCGTTGATGGTGAAATAGTTTTCCTTGATGAATGTATATTTTATATGGAACTG-TAT
66 TTCAACCATTGTCGATGGTGAAATAGTTTTCCTTGATGAATGTATATTTTATATGGAACTGTTA-
* * * * **
107518014 TATCAATGTATTATAAATCTATTTCAAAAGAAGCTTGATTCAAGTTTGCTTCTGTCAGATG-CGA
130 TATCAATGTATTATGAATCTATTTGAAAAGAAGCTTGATTCAAGTTTACTACTACCAGATGTC-A
* * * * * * *
107518078 ACCGATACTTTGCAAAGGAGAATCCTCAAGACATTGTCTTTGCTTCTAACAGAATTAGCAATACT
194 ATCGATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATACT
* * * * * * *
107518143 GCAACGTTGATAGGAGAACATCAACCGTCGTTTTCAAATTTAGTTTCAACAGTAGCAAATAACAA
259 GCAACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAA
107518208 TCAGCCTCAAGATGGCTTCAATTTAGGTGCG
324 TCAGCCTCAAGATGGCTTCAATTTAGGTGCG
* * *
107518239 ACAGATCATCTGACCTAAGAGTTGAT-AGAAGGAGAACAACCATTAGAACCATTTTCATTTCTAA
1 ACAGATCATCCGACCCAAGAGTTGATAAG-AGGAGAACAACCATTAGAACCATTTGCATTTCTAA
** * ** * *
107518303 CTTCAACCATTGTTAATGGTGAAATAGTTTTCCTGGACAAAAGGTATATTTTATATGGAACTATT
65 CTTCAACCATTGTCGATGGTGAAATAGTTTTCCTTGA-TGAATGTATATTTTATATGGAACTGTT
* * * * *
107518368 ATATCAATGGATTATGAATCAATTTGAAAAGAAGCTTGATTCAAATTTACTACTACTAGATGTTA
129 ATATCAATGTATTATGAATCTATTTGAAAAGAAGCTTGATTCAAGTTTACTACTACCAGATGTCA
* * * *
107518433 A-CTGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTACCTCTAAAAAAATTAGCAATAC
194 ATC-GATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATAC
* * *
107518497 TGCAACGTCGACAGGAGAACAATAATCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACA
258 TGCAACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACA
* * *
107518562 ATCAGCCTC-AGAATGGATTTAATTTAGGTGTG
323 ATCAGCCTCAAG-ATGGCTTCAATTTAGGTGCG
** ** * * * *
107518594 GTAGATCATTTGA-CCATAGAGTTTAT-AGAAGGGGAGCAACCATCAGAACCATTTGCATTTCTA
1 ACAGATCATCCGACCCA-AGAGTTGATAAG-AGGAGAACAACCATTAGAACCATTTGCATTTCTA
* * *** *
107518657 ACTTCAACCATTGTCGATGGTGAAATAGTTTTCCTGGACGAATGTGCCTTTTTTATGGAACTGTT
64 ACTTCAACCATTGTCGATGGTGAAATAGTTTTCCTTGATGAATGTATATTTTATATGGAACTGTT
* * * *
107518722 ATATCAATGGATTATGAATCAATTTGAAAAGAATCCTGATTCAAGTTTACTACTACCAGATGTCA
129 ATATCAATGTATTATGAATCTATTTGAAAAGAAGCTTGATTCAAGTTTACTACTACCAGATGTCA
* * * * * *
107518787 ATCAATATTTTGCAGAGGGGAATCCTCAAGAGATTGTCTCTACCTCCAATAGGATTAGCAAGACT
194 ATCGATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATACT
* * * * ** * *
107518852 ACAACGTCAATAGGGGAAAAACAATAATCATCTTCAAATTTGGATTCAGTAGTAGCAAATAACAA
259 GCAACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAA
** * *
107518917 TCAAACTCAGGATGGATTCAATTTAGGTGTCG
324 TCAGCCTCAAGATGGCTTCAATTTAGGTG-CG
* * *
107518949 -CAGATCATCCGACCCAAGAGTTTATAGGAGGAGAACAACCATTAGAACTATTTGCATTTCTAAC
1 ACAGATCATCCGACCCAAGAGTTGATAAGAGGAGAACAACCATTAGAACCATTTGCATTTCTAAC
* * *
107519013 TTCAACAATTGTCGATTGTGAAATAGTTTTCC-TGAATGAATGTATATTTT-TGAAGGAACTGTT
66 TTCAACCATTGTCGATGGTGAAATAGTTTTCCTTG-ATGAATGTATATTTTAT-ATGGAACTGTT
* * * * * * * * *
107519076 ATATAAATATTTTATGAATCCT-TTTTAAAAGAACCGTGATTCATGTTTACTACTGCTAGATGTC
129 ATATCAATGTATTATGAAT-CTATTTGAAAAGAAGCTTGATTCAAGTTTACTACTACCAGATGTC
* * * * * * ** *
107519140 AGTTGATACTTTGCTGAGTGGAATCGTCAAGACATTGTCTTTGGCTCCAACAGAATTAGCAATAT
193 AATCGATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATAC
* * * *
107519205 TGCAACGTCGATAGGAGAACAACAACTATCGCCTTCAAATTTGGATTTAGCAGTATCAAATAACA
258 TGCAACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACA
** * * *
107519270 ATCAGCCTCTGGTTGGCTTCAATTTAGGTACA
323 ATCAGCCTCAAGATGGCTTCAATTTAGGTGCG
* * * * * *
107519302 ACAGATCATCCGGCCCAAGATTTGGA-ATGAGGAGAACAAGCGTAAGAACCATTTGCATTTCTAA
1 ACAGATCATCCGACCCAAGAGTT-GATAAGAGGAGAACAACCATTAGAACCATTTGCATTTCTAA
* * * * * *
107519366 CTTCAACTATTGTCGATGGTGAAATAGTTAT-CTTGGAT-AAAGTATCTTTTATATAGAACTGTG
65 CTTCAACCATTGTCGATGGTGAAATAGTTTTCCTT-GATGAATGTATATTTTATATGGAACTGTT
* ** * * * * * * *
107519429 GTATCAATGTATTATGAATCTATTTGAATTGAAG-TCTGGTTCAGGATTATTGCTACCAGATATA
129 ATATCAATGTATTATGAATCTATTTGAAAAGAAGCT-TGATTCAAGTTTACTACTACCAGATGTC
* * * * * * **
107519493 AATCAATACTTTGCAGATGGGAATCCTCAAGACATTGTCTTTACATCCAATAGAAGTAGTGATAC
193 AATCGATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATAC
* * * * * * **
107519558 TGCAACATCCATAGGAGAACAACAACCATCATCTTAAAATTTGTATTTAGTTGTAGCAAATAACA
258 TGCAACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACA
* * *
107519623 ATCAGCCTCAGGATGACTTCAATTTATGTGCG
323 ATCAGCCTCAAGATGGCTTCAATTTAGGTGCG
* * * * * * *
107519655 GCCGATCATCCGACCTAAGAGTTTATTAGAGGAGAACAACCATCAAAACCATTTGCATTTCTAAC
1 ACAGATCATCCGACCCAAGAGTTGATAAGAGGAGAACAACCATTAGAACCATTTGCATTTCTAAC
* * * *
107519720 TTCAACCATTATCGATGGAGAAATAGTTTT-CTTGGATGAATGTATATTCTATATGGAATTGTTA
66 TTCAACCATTGTCGATGGTGAAATAGTTTTCCTT-GATGAATGTATATTTTATATGGAACTGTTA
107519784 TATCAA
130 TATCAA
107519790 CTTGCTTCAA
Statistics
Matches: 1572, Mismatches: 305, Indels: 56
0.81 0.16 0.03
Matches are distributed among these distances:
352 3 0.00
353 286 0.18
354 974 0.62
355 307 0.20
356 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (354 bp):
ACAGATCATCCGACCCAAGAGTTGATAAGAGGAGAACAACCATTAGAACCATTTGCATTTCTAAC
TTCAACCATTGTCGATGGTGAAATAGTTTTCCTTGATGAATGTATATTTTATATGGAACTGTTAT
ATCAATGTATTATGAATCTATTTGAAAAGAAGCTTGATTCAAGTTTACTACTACCAGATGTCAAT
CGATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTCTACCTCCAACAGAATTAGCAATACTGC
AACGTCGATAGGAGAACAACAACCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAATC
AGCCTCAAGATGGCTTCAATTTAGGTGCG
Found at i:107519009 original size:709 final size:702
Alignment explanation
Indices: 107517532--107519789 Score: 2350
Period size: 709 Copynumber: 3.2 Consensus size: 702
107517522 CGGGCTGTTA
* * * * *
107517532 CAGATCATCCGACCCAAGACTTGATAGGAGGAAAACAACCTTTAGAACCATCTT-CATTACTATC
1 CAGATCATCCGACCCAAGAGTTGATAGGAGGAGAACAACCATTAGAACCAT-TTGCATTTCTAAC
* * * * * * *
107517596 TTCAACCTTTTTCGACGGTGAAATAGCTTTCCTGGATGGATGTATCTTCTATATGGAACTGTTAT
65 TTCAACCATTGTCGATGGTGAAATAGTTTTCCTGGAAGAATGTATATTCTATATGGAACTGTTAT
* * * * * * * *
107517661 GTCAATGTACTATGTACCATTTTAAAAAGAAGCATGGTTCAAGTTTGCCACTACCAGATGTCAAT
130 ATCAATGTATTATGAATCATTTTAAAAAGAAGCATGATTCAAGTTTACTACTACTAGATGTCAAT
* * * * *
107517726 CGATAC-TTAGTAGAGGGGAATCCTTAAGACATTGTCTCTGCCT-TCAACATAAGTAGGAATACT
195 -GATACTTTA-CAGAGGGGAATCCTCAAGACATTGTCTCTGCCTCT-AACAAAATTAGCAATACT
* * * * * * *
107517789 GCAACGTTGATATGAGAAAAACAACCATCGACTTCAAATTTGAATTCAGTAGTAGAAAATAATAA
257 GCAACGTCGATAGGAGAACAACAA-CATCGACTTCAAATTTGGATTCAGCAGTAGCAAATAACAA
* * * * * *
107517854 TCAGCTTGA-AGATGGTTTCAAATTACGTGCAACAGATCATCCAACCCAAGAGTTGATA-AGAGG
321 TCAGCCTCAGA-ATGGTTT-AATTTAGGTGCAACAGATCATCCGA-CCAAGAGTTTATAGA-AGG
* * * * * *
107517917 AGAACTACTATTAGAACCATTTGCATTTCTAACATCAACCATCGTTGATGGTGAAATAGTTTTCC
382 AGAACAACCATAAGAACCATTTGCATTTCTAACTTCAACCATTGTCGATGGTGAAATAGTTTTCC
* * * *
107517982 TTGATGAATGTATATTTTATATGGAACTG-TATTATCAATGTATTATAAATCTATTTCAAAAGAA
447 TGGA-GAATGTATCTTTTATATGGAACTGTTA-TATCAATGTATTATGAATCTATTTGAAAAGAA
* * * * ** * * * *
107518046 GCTTGATTCAAGTTTGCTTCTGTCAGATG-CGAACCGATACTTTGCAAAGGAGAATCCTCAAGAC
510 TCCTGATTCAAGTTTACTACTACCAGATGTC-AATCAATACTTTGCAGAGGGGAATCCTCAAGAC
* * * * ** * * * *
107518110 ATTGTCTTTGCTTCTAACAGAATTAGCAATACTGCAACGTTGATAGGAGAACATCAACCGTCGTT
574 ATTGTCTTTACATCCAATAGAATTAGCAATACTGCAACGTCAATAGGAGAACAACAACCATCATC
* * ** * *
107518175 TTCAAATTTAGTTTCAACAGTAGCAAATAACAATCAGCCTCAAGATGGCTTCAATTTAGGTGCG
639 TTCAAATTTGGATTCAGTAGTAGCAAATAACAATCAGCCTCAGGATGGATTCAATTTAGGTGCG
* * * *
107518239 ACAGATCATCTGACCTAAGAGTTGATAGAAGGAGAACAACCATTAGAACCATTTTCATTTCTAAC
1 -CAGATCATCCGACCCAAGAGTTGATAGGAGGAGAACAACCATTAGAACCATTTGCATTTCTAAC
** * * * *
107518304 TTCAACCATTGTTAATGGTGAAATAGTTTTCCTGGACAAAAGGTATATTTTATATGGAACTATTA
65 TTCAACCATTGTCGATGGTGAAATAGTTTTCCTGGA-AGAATGTATATTCTATATGGAACTGTTA
* * * * * *
107518369 TATCAATGGATTATGAATCAATTTGAAAAGAAGCTTGATTCAAATTTACTACTACTAGATGTTAA
129 TATCAATGTATTATGAATCATTTTAAAAAGAAGCATGATTCAAGTTTACTACTACTAGATGTCAA
* *
107518434 CTGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTACCTCTAAAAAAATTAGCAATACTG
194 -TGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTGCCTCTAACAAAATTAGCAATACTG
* * *
107518499 CAACGTCGACAGGAGAACAATAATCATCGTCTTCAAATTTGGATTCAGCAGTAGCAAATAACAAT
258 CAACGTCGATAGGAGAACAACAA-CATCGACTTCAAATTTGGATTCAGCAGTAGCAAATAACAAT
**** ** *
107518564 CAGCCTCAGAATGGATTTAATTTAGGTGTGGTAGATCATTTGACCATAGAGTTTATAGAAGGGGA
322 CAGCCTCAGAATGG-TTTAATTTAGGTGCAACAGATCATCCGACCA-AGAGTTTATAGAAGGAGA
* *
107518629 GCAACCATCAGAACCATTTGCATTTCTAACTTCAACCATTGTCGATGGTGAAATAGTTTTCCTGG
385 ACAACCATAAGAACCATTTGCATTTCTAACTTCAACCATTGTCGATGGTGAAATAGTTTTCCTGG
** * * *
107518694 ACGAATGTGCCTTTTTTATGGAACTGTTATATCAATGGATTATGAATCAATTTGAAAAGAATCCT
450 A-GAATGTATCTTTTATATGGAACTGTTATATCAATGTATTATGAATCTATTTGAAAAGAATCCT
* *
107518759 GATTCAAGTTTACTACTACCAGATGTCAATCAATATTTTGCAGAGGGGAATCCTCAAGAGATTGT
514 GATTCAAGTTTACTACTACCAGATGTCAATCAATACTTTGCAGAGGGGAATCCTCAAGACATTGT
* * * * * * * **
107518824 CTCTACCTCCAATAGGATTAGCAAGACTACAACGTCAATAGGGGAAAAACAATAATCATCTTCAA
579 CTTTACATCCAATAGAATTAGCAATACTGCAACGTCAATAGGAGAACAACAACCATCATCTTCAA
**
107518889 ATTTGGATTCAGTAGTAGCAAATAACAATCAAACTCAGGATGGATTCAATTTAGGTGTCG
644 ATTTGGATTCAGTAGTAGCAAATAACAATCAGCCTCAGGATGGATTCAATTTAGGTG-CG
* *
107518949 CAGATCATCCGACCCAAGAGTTTATAGGAGGAGAACAACCATTAGAACTATTTGCATTTCTAACT
1 CAGATCATCCGACCCAAGAGTTGATAGGAGGAGAACAACCATTAGAACCATTTGCATTTCTAACT
* * * *
107519014 TCAACAATTGTCGATTGTGAAATAGTTTTCCT-GAATGAATGTATATT-TTTGAAGGAACTGTTA
66 TCAACCATTGTCGATGGTGAAATAGTTTTCCTGGAA-GAATGTATATTCTAT-ATGGAACTGTTA
* * * * * * * * *
107519077 TATAAATATTTTATGAATCCTTTTTAAAAGAACCGTGATTCATGTTTACTACTGCTAGATGTCAG
129 TATCAATGTATTATGAATCATTTTAAAAAGAAGCATGATTCAAGTTTACTACTACTAGATGTCA-
* * * * * * * * * *
107519142 TTGATACTTTGCTGAGTGGAATCGTCAAGACATTGTCTTTGGCTCCAACAGAATTAGCAATATTG
193 ATGATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTGCCTCTAACAAAATTAGCAATACTG
* * *
107519207 CAACGTCGATAGGAGAACAACAACTATCGCCTTCAAATTTGGATTTAGCAGTATCAAATAACAAT
258 CAACGTCGATAGGAGAACAACAAC-ATCGACTTCAAATTTGGATTCAGCAGTAGCAAATAACAAT
* ** * * *
107519272 CAGCCTCTGGTTGGCTTCAATTTAGGTACAACAGATCATCCGGCCCAAGA-TTTGGA-ATG-AGG
322 CAGCCTCAGAATGG-TTTAATTTAGGTGCAACAGATCATCC-GACCAAGAGTTT--ATA-GAAGG
* * * * *
107519334 AGAACAAGCGTAAGAACCATTTGCATTTCTAACTTCAACTATTGTCGATGGTGAAATAGTTATCT
382 AGAACAACCATAAGAACCATTTGCATTTCTAACTTCAACCATTGTCGATGGTGAAATAGTTTTCC
* * * ** **
107519399 TGGATAAAGTATCTTTTATATAGAACTGTGGTATCAATGTATTATGAATCTATTTGAATTGAAGT
447 TGGAGAATGTATCTTTTATATGGAACTGTTATATCAATGTATTATGAATCTATTTGAAAAGAA-T
* * * * * * * *
107519464 -CTGGTTCAGGATTATTGCTACCAGATATAAATCAATACTTTGCAGATGGGAATCCTCAAGACAT
511 CCTGATTCAAGTTTACTACTACCAGATGTCAATCAATACTTTGCAGAGGGGAATCCTCAAGACAT
* ** * *
107519528 TGTCTTTACATCCAATAGAAGTAGTGATACTGCAACATCCATAGGAGAACAACAACCATCATCTT
576 TGTCTTTACATCCAATAGAATTAGCAATACTGCAACGTCAATAGGAGAACAACAACCATCATCTT
* * * * *
107519593 AAAATTTGTATTTAGTTGTAGCAAATAACAATCAGCCTCAGGAT-GACTTCAATTTATGTGCGG
641 CAAATTTGGATTCAGTAGTAGCAAATAACAATCAGCCTCAGGATGGA-TTCAATTTAGGTGC-G
* * * * *
107519656 CCGATCATCCGACCTAAGAGTTTATTA-GAGGAGAACAACCATCAAAACCATTTGCATTTCTAAC
1 CAGATCATCCGACCCAAGAGTTGA-TAGGAGGAGAACAACCATTAGAACCATTTGCATTTCTAAC
* * * * *
107519720 TTCAACCATTATCGATGGAGAAATAGTTTTCTTGGATGAATGTATATTCTATATGGAATTGTTAT
65 TTCAACCATTGTCGATGGTGAAATAGTTTTCCTGGAAGAATGTATATTCTATATGGAACTGTTAT
107519785 ATCAA
130 ATCAA
107519790 CTTGCTTCAA
Statistics
Matches: 1279, Mismatches: 245, Indels: 53
0.81 0.16 0.03
Matches are distributed among these distances:
706 3 0.00
707 322 0.25
708 373 0.29
709 566 0.44
710 15 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (702 bp):
CAGATCATCCGACCCAAGAGTTGATAGGAGGAGAACAACCATTAGAACCATTTGCATTTCTAACT
TCAACCATTGTCGATGGTGAAATAGTTTTCCTGGAAGAATGTATATTCTATATGGAACTGTTATA
TCAATGTATTATGAATCATTTTAAAAAGAAGCATGATTCAAGTTTACTACTACTAGATGTCAATG
ATACTTTACAGAGGGGAATCCTCAAGACATTGTCTCTGCCTCTAACAAAATTAGCAATACTGCAA
CGTCGATAGGAGAACAACAACATCGACTTCAAATTTGGATTCAGCAGTAGCAAATAACAATCAGC
CTCAGAATGGTTTAATTTAGGTGCAACAGATCATCCGACCAAGAGTTTATAGAAGGAGAACAACC
ATAAGAACCATTTGCATTTCTAACTTCAACCATTGTCGATGGTGAAATAGTTTTCCTGGAGAATG
TATCTTTTATATGGAACTGTTATATCAATGTATTATGAATCTATTTGAAAAGAATCCTGATTCAA
GTTTACTACTACCAGATGTCAATCAATACTTTGCAGAGGGGAATCCTCAAGACATTGTCTTTACA
TCCAATAGAATTAGCAATACTGCAACGTCAATAGGAGAACAACAACCATCATCTTCAAATTTGGA
TTCAGTAGTAGCAAATAACAATCAGCCTCAGGATGGATTCAATTTAGGTGCG
Found at i:107527619 original size:6 final size:6
Alignment explanation
Indices: 107527601--107527647 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
107527591 TATTTTACTA
*
107527601 TTATTT TCA-TT TTATTT TTATTT TTATTT TTATTT TTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
107527647 T
1 T
107527648 GTCTCTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 9 0.24
6 28 0.76
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:107527625 original size:12 final size:12
Alignment explanation
Indices: 107527601--107527647 Score: 71
Period size: 11 Copynumber: 4.1 Consensus size: 12
107527591 TATTTTACTA
*
107527601 TTATTTTCA-TT
1 TTATTTTTATTT
107527612 TTATTTTTATTT
1 TTATTTTTATTT
107527624 TTATTTTTATTT
1 TTATTTTTATTT
107527636 TTA-TTTTATTT
1 TTATTTTTATTT
107527647 T
1 T
107527648 GTCTCTTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
11 17 0.50
12 17 0.50
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (12 bp):
TTATTTTTATTT
Found at i:107527636 original size:17 final size:17
Alignment explanation
Indices: 107527591--107527647 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
107527581 TAAGTCCCTA
* *
107527591 TATTTTACTATTATTTT
1 TATTTTATTTTTATTTT
*
107527608 CATTTTATTTTTATTTT
1 TATTTTATTTTTATTTT
107527625 TATTTTTATTTTTA-TTT
1 TA-TTTTATTTTTATTTT
107527642 TATTTT
1 TATTTT
107527648 GTCTCTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
16 4 0.11
17 20 0.57
18 11 0.31
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTATTTTTATTTT
Found at i:107527918 original size:42 final size:42
Alignment explanation
Indices: 107527859--107527945 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
107527849 GTTTCGCTTC
107527859 TCTCCCTCTCTTCTAATATTATACTTATATTTTTATTATTTA
1 TCTCCCTCTCTTCTAATATTATACTTATATTTTTATTATTTA
107527901 TCTCCCTCTCTTCTAATATTATACTTATATTTTTATTATTTA
1 TCTCCCTCTCTTCTAATATTATACTTATATTTTTATTATTTA
107527943 TCT
1 TCT
107527946 TTGTACATTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (42 bp):
TCTCCCTCTCTTCTAATATTATACTTATATTTTTATTATTTA
Found at i:107529555 original size:30 final size:30
Alignment explanation
Indices: 107529520--107529576 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
107529510 TAGGCACTTC
* *
107529520 CACACGGGTAAACCACACGCCTGTGTGAGG
1 CACACGGGCAAACCACACGCCCGTGTGAGG
*
107529550 CACACGGGCAGACCACACGCCCGTGTG
1 CACACGGGCAAACCACACGCCCGTGTG
107529577 TCAGGGCCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.35, G:0.30, T:0.11
Consensus pattern (30 bp):
CACACGGGCAAACCACACGCCCGTGTGAGG
Found at i:107532562 original size:23 final size:22
Alignment explanation
Indices: 107532522--107532640 Score: 107
Period size: 23 Copynumber: 5.3 Consensus size: 22
107532512 AAGTTCCTTC
107532522 GAGCTGAACAGTAAGCTCTATT
1 GAGCTGAACAGTAAGCTCTATT
* *
107532544 GAGCTGAAACGGTAAGCTCTATG
1 GAGCTG-AACAGTAAGCTCTATT
* * *
107532567 GAGCTGAACGGTAAGCTCCAAT
1 GAGCTGAACAGTAAGCTCTATT
* *
107532589 GAGCTGAAATAGTAAGCTCT-TAC
1 GAGCTG-AACAGTAAGCTCTAT-T
*
107532612 GAGCTAAATCAGTAAGCTC-ATAT
1 GAGCTGAA-CAGTAAGCTCTAT-T
107532635 GAGCTG
1 GAGCTG
107532641 TGGTGAGTCC
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
22 27 0.35
23 51 0.65
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (22 bp):
GAGCTGAACAGTAAGCTCTATT
Found at i:107532573 original size:45 final size:44
Alignment explanation
Indices: 107532521--107532640 Score: 134
Period size: 45 Copynumber: 2.6 Consensus size: 44
107532511 TAAGTTCCTT
*
107532521 CGAGCTGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTC-TA
1 CGAGCTGAACAGTAAGCTC-ATTGAGCTGAAACAGTAAGCTCTTA
* * * *
107532565 TGGAGCTGAACGGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTA
1 -CGAGCTGAACAGTAAGCT-CATTGAGCTGAAACAGTAAGCTCTTA
*
107532611 CGAGCTAAATCAGTAAGCTCATATGAGCTG
1 CGAGCTGAA-CAGTAAGCTCAT-TGAGCTG
107532641 TGGTGAGTCC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
45 44 0.71
46 18 0.29
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (44 bp):
CGAGCTGAACAGTAAGCTCATTGAGCTGAAACAGTAAGCTCTTA
Found at i:107538646 original size:13 final size:13
Alignment explanation
Indices: 107538628--107538670 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
107538618 AACAAAGACA
107538628 GACACGGTCGTGC
1 GACACGGTCGTGC
107538641 GACACGGTCGTGC
1 GACACGGTCGTGC
*
107538654 GACACGGCCGTGC
1 GACACGGTCGTGC
107538667 -ACAC
1 GACAC
107538671 TAACACACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 4 0.14
13 25 0.86
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (13 bp):
GACACGGTCGTGC
Found at i:107541009 original size:13 final size:13
Alignment explanation
Indices: 107540991--107541015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107540981 GCTTAATTAC
107540991 TTAATTAGTTTAG
1 TTAATTAGTTTAG
107541004 TTAATTAGTTTA
1 TTAATTAGTTTA
107541016 ATAAACAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAG
Found at i:107544642 original size:13 final size:13
Alignment explanation
Indices: 107544626--107544658 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
107544616 TTTGATTAAA
*
107544626 TTAGTTAATTAGT
1 TTAGATAATTAGT
107544639 TTAGATAATTAGT
1 TTAGATAATTAGT
107544652 TTA-ATAA
1 TTAGATAA
107544659 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:107544949 original size:5 final size:5
Alignment explanation
Indices: 107544939--107544963 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
107544929 TTTTTCTTGC
107544939 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
107544964 TACTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:107549939 original size:6 final size:6
Alignment explanation
Indices: 107549928--107550013 Score: 63
Period size: 6 Copynumber: 14.7 Consensus size: 6
107549918 AATCCTCCTA
* *
107549928 TTTTAT TTTTA- TTTTA- -TTTAT TCTTAT TTTTAT TTTCAT TTATT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT
* * * * *
107549973 ATTTTAT TCTTAT TTTTCT TTTGAT TTTGAT TTTGAT TTTT
1 -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
107550014 CAATTTTCTT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
4 4 0.06
5 5 0.08
6 52 0.80
7 4 0.06
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:107549949 original size:15 final size:14
Alignment explanation
Indices: 107549929--107549977 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 14
107549919 ATCCTCCTAT
107549929 TTTATTTTTATTTTA
1 TTTATTTTTA-TTTA
*
107549944 TTTATTCTTA-TT-
1 TTTATTTTTATTTA
*
107549956 TTTATTTTCATTTA
1 TTTATTTTTATTTA
107549970 TTTATTTT
1 TTTATTTT
107549978 ATTCTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.28
13 4 0.14
14 8 0.28
15 9 0.31
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTATTTTTATTTA
Found at i:107549979 original size:31 final size:31
Alignment explanation
Indices: 107549935--107549999 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
107549925 CTATTTTATT
107549935 TTTATTTTATTTATTCTTATTTTTATTTTCA
1 TTTATTTTATTTATTCTTATTTTTATTTTCA
* *
107549966 TTTA-TTTATTTTATTCTTATTTTTCTTTTGA
1 TTTATTTTA-TTTATTCTTATTTTTATTTTCA
107549997 TTT
1 TTT
107550000 TGATTTTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (31 bp):
TTTATTTTATTTATTCTTATTTTTATTTTCA
Found at i:107549989 original size:26 final size:26
Alignment explanation
Indices: 107549926--107549999 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
107549916 TGAATCCTCC
107549926 TATTTTATTTTT-ATTTTATTTATTCT
1 TATTTTATTTTTCA-TTTATTTATTCT
107549952 TATTTT-TATTTTCATTTATTTATT-T
1 TATTTTAT-TTTTCATTTATTTATTCT
*
107549977 TATTCTTATTTTTCTTTTGATTT
1 TATT-TTATTTTTCATTT-ATTT
107550000 TGATTTTGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
25 6 0.14
26 30 0.71
27 6 0.14
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (26 bp):
TATTTTATTTTTCATTTATTTATTCT
Found at i:107554971 original size:46 final size:47
Alignment explanation
Indices: 107554737--107555091 Score: 252
Period size: 46 Copynumber: 7.5 Consensus size: 47
107554727 ATGTCAATGC
*
107554737 CATGTCCCAGACATGGTCTTACACTGGCTT--ATCCATCAA-GTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCAAGGCCGATG
* * ** **
107554783 CCATGTCCCAGTCATGGTCTTACACTGAC-TATCAAAATCAAGGCCGACAC
1 -CATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCAAGGCCGA-TG
* * * *
107554833 CATGTCCCTA-ACATGGTCTTACACTAGCTCTTACATATC-CGTGTCGATG
1 CATGTCCC-AGACATGGTCTTACACT-G-GCTTACATCTCAAG-GCCGATG
* * *
107554882 CCATGTCCCAGACATGGTCTTACACTGAC--ATATCTCGTA-GCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAGGCCGATG
107554928 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGGCCGATG
* * * ** *
107554974 CATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTCATTGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCAAGGCCGATG
* * * **
107555020 CCATGTCCCAGACATGGTCTTACACTGTCTTTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACAT-CTCAAGGCCGATG
107555068 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
107555092 AGCACACAAA
Statistics
Matches: 249, Mismatches: 36, Indels: 47
0.75 0.11 0.14
Matches are distributed among these distances:
44 12 0.05
45 15 0.06
46 73 0.29
47 55 0.22
48 26 0.10
49 30 0.12
50 34 0.14
51 2 0.01
52 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGGCCGATG
Found at i:107555086 original size:140 final size:143
Alignment explanation
Indices: 107554728--107555091 Score: 424
Period size: 140 Copynumber: 2.5 Consensus size: 143
107554718 TAGGGTATAA
* *
107554728 TGTCAATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGT--CGATGCCATGTCC
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTT-T-CAT-AAGTGCCGATG-CATGTCC
* *
107554791 CAGTCATGGTCTTACACTGACTATCAAAATCAAGGCCGACACCATGTCCCTAACATGGTCTTACA
62 CAGACAT-GTCTTACACTGACTATCAAAATCAAGGCCGACACCATGTCCCAAACATGGTCTTACA
*
107554856 CTAGCTCTTACATATCCG
126 CTAGCTCTTACATATCAG
* *
107554874 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGACATATC-T-CGTAGCCGATGCATGTCCCA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TTTCATAAGT-GCCGATGCATGTCCCA
* ** **
107554937 GACATGTCTTACACTGGCT-T-ACATCTCAAGGCCGA-TGCATGTCCCAAACAT-GTCTTACACT
64 GACATGTCTTACACTGACTATCA-AAATCAAGGCCGACACCATGTCCCAAACATGGTCTTACACT
* * *
107554998 AGCTC-T-CGTCTCAT
128 AGCTCTTACATATCAG
*
107555012 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGTCTTTCATAATGTGGCCGATGCATGTCCCA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTTTCATAA-GT-GCCGATGCATGTCCCA
107555077 GACATGTCTTACACT
64 GACATGTCTTACACT
107555092 AGCACACAAA
Statistics
Matches: 191, Mismatches: 19, Indels: 22
0.82 0.08 0.09
Matches are distributed among these distances:
137 3 0.02
138 41 0.21
139 1 0.01
140 48 0.25
141 14 0.07
142 14 0.07
143 13 0.07
144 14 0.07
145 6 0.03
146 36 0.19
147 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (143 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTTTCATAAGTGCCGATGCATGTCCCAGA
CATGTCTTACACTGACTATCAAAATCAAGGCCGACACCATGTCCCAAACATGGTCTTACACTAGC
TCTTACATATCAG
Found at i:107555094 original size:94 final size:95
Alignment explanation
Indices: 107554733--107555091 Score: 330
Period size: 94 Copynumber: 3.8 Consensus size: 95
107554723 TATAATGTCA
* ** * *
107554733 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CATCAAGTCGATGCCATGTCCCAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATATCGTGCCGATGCCATGTCCCAGACA
** **
107554797 TGGTCTTACACTGACTATCAAAATCAAGGCCG
65 TGGTCTTACACTGACTATC-ATCTCATTGCCG
** * *
107554829 ACACCATGTCCCTA-ACATGGTCTTACACTAGCTCTTACATATCCGTGTCGATGCCATGTCCCAG
1 ATGCCATGTCCC-AGACATGGTCTTACACT-G-GCTTACATAT-CGTGCCGATGCCATGTCCCAG
* *
107554893 ACATGGTCTTACACTGAC-AT-ATCTCGTAGCCG
62 ACATGGTCTTACACTGACTATCATCTCATTGCCG
* *
107554925 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAAG-GCCGATG-CATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATC--GTGCCGATGCCATGTCCCAGAC
* * *
107554986 AT-GTCTTACACT-AGCTCTCGTCTCATTGTCG
64 ATGGTCTTACACTGA-CTATCATCTCATTGCCG
* *
107555017 ATGCCATGTCCCAGACATGGTCTTACACTGTCTTTCATAAT-GTGGCCGATG-CATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-ATCGT-GCCGATGCCATGTCCCAGAC
107555080 AT-GTCTTACACT
64 ATGGTCTTACACT
107555092 AGCACACAAA
Statistics
Matches: 220, Mismatches: 27, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
89 1 0.00
90 11 0.05
91 15 0.07
92 26 0.12
93 16 0.07
94 58 0.26
95 13 0.06
96 33 0.15
97 3 0.01
98 8 0.04
99 36 0.16
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGTGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGACTATCATCTCATTGCCG
Found at i:107559038 original size:31 final size:31
Alignment explanation
Indices: 107558997--107559056 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
107558987 CCTTTTCATA
*
107558997 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
107559028 TTTCAAATTTCATATTACTGGGCCGAAGC
1 TTTCAAATTTCATAACACTGGGCCGAAGC
107559057 GTTTACGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:107559303 original size:24 final size:24
Alignment explanation
Indices: 107559266--107559394 Score: 179
Period size: 24 Copynumber: 5.4 Consensus size: 24
107559256 CTGAAGGCCT
*
107559266 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
107559291 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
107559315 AGCCCTTTT-ATAACTGGGCCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
107559338 AGCCCTTTTGATAACTAGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
*
107559362 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
107559386 AGCCCTTTT
1 AGCCCTTTT
107559395 TCACTTCCTC
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
23 22 0.23
24 68 0.72
25 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:107559330 original size:47 final size:48
Alignment explanation
Indices: 107559266--107559393 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 48
107559256 CTGAAGGCCT
* *
107559266 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTAGGGCATA
* ** *
107559315 AGCCCTTTT-ATAACTGGGCCATAAGCCCTTTTGATAACTAGGGTATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTAGGGCATA
*
107559362 AGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTT
107559394 TTCACTTCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
47 41 0.58
48 26 0.37
49 4 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTAGGGCATA
Found at i:107559469 original size:20 final size:20
Alignment explanation
Indices: 107559444--107559504 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
107559434 TTATGATTAC
107559444 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
107559464 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
107559484 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
107559504 A
1 A
107559505 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:107559579 original size:25 final size:25
Alignment explanation
Indices: 107559547--107559594 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
107559537 ATACATAAAC
* * *
107559547 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
107559572 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
107559595 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:107561136 original size:27 final size:27
Alignment explanation
Indices: 107560835--107561125 Score: 354
Period size: 27 Copynumber: 10.8 Consensus size: 27
107560825 GGGTATTTTA
* * *
107560835 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
107560862 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
107560889 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
107560916 GTAATTCT-TAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
107560942 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
107560969 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
107560996 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
107561023 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
*
107561050 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
107561077 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
107561104 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
107561126 CTTTGGTAAT
Statistics
Matches: 233, Mismatches: 26, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
26 24 0.10
27 207 0.89
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:107561147 original size:27 final size:27
Alignment explanation
Indices: 107561076--107561325 Score: 213
Period size: 27 Copynumber: 9.3 Consensus size: 27
107561066 AGGGTAAAAC
****
107561076 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
107561103 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
107561130 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
107561157 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
107561184 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
107561211 GGTAATTTTACAAA-CTAGGGGTA-TTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
107561237 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
107561264 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
107561291 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
107561317 GGTAATTTT
1 GGTAATTTT
107561326 GTAAACTAAA
Statistics
Matches: 189, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 44 0.23
27 143 0.76
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:107561206 original size:54 final size:53
Alignment explanation
Indices: 107561148--107561304 Score: 127
Period size: 53 Copynumber: 2.9 Consensus size: 53
107561138 TACAAGTCGA
** *
107561148 GGGTATTTCAATAATTTTACAGGTCGA-GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTCAATAATTTTACA-AACGAGGGGTATTTCA-TAATTTCACAAACTAG
*** * * *
107561202 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTGATAATTTTACAAACTAG
1 GGGTATTTCAATAATTTTACAAACGAGGGGTATTTCATAATTTCACAAACTAG
*** * * * * *
107561255 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTCAATAATTTTACAAACGAGGGGTATTTCA-TAATTTCACAAA
107561305 GCAGGGTATT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 49 0.56
54 39 0.44
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTCAATAATTTTACAAACGAGGGGTATTTCATAATTTCACAAACTAG
Found at i:107561263 original size:53 final size:54
Alignment explanation
Indices: 107561174--107561325 Score: 211
Period size: 53 Copynumber: 2.9 Consensus size: 54
107561164 TTACAGGTCG
* * *
107561174 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
* * *
107561228 GGGGTATTTGA-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
*
107561281 AGGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTT
1 AGGGTATTTCAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTT
107561326 GTAAACTAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
53 65 0.74
54 22 0.25
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
Found at i:107563032 original size:30 final size:31
Alignment explanation
Indices: 107562983--107563042 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
107562973 GTGATCAGAC
107562983 TGTGTACAATTCAAAAATAGGGTCACACAAT
1 TGTGTACAATTCAAAAATAGGGTCACACAAT
* *
107563014 TGTGTGCAATTC-AAAATAGGGTTACACAA
1 TGTGTACAATTCAAAAATAGGGTCACACAA
107563043 ATAAGTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (31 bp):
TGTGTACAATTCAAAAATAGGGTCACACAAT
Found at i:107567457 original size:40 final size:39
Alignment explanation
Indices: 107567345--107567449 Score: 156
Period size: 39 Copynumber: 2.7 Consensus size: 39
107567335 GAATGTTCGA
* * *
107567345 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
107567384 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
107567423 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
107567450 CTTTGTGCGG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 50 0.85
40 9 0.15
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:107575446 original size:40 final size:39
Alignment explanation
Indices: 107575334--107575438 Score: 156
Period size: 39 Copynumber: 2.7 Consensus size: 39
107575324 GAATGTTCGA
* * *
107575334 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
107575373 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
107575412 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
107575439 CTTTGTGCGG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 50 0.85
40 9 0.15
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:107577463 original size:30 final size:30
Alignment explanation
Indices: 107577427--107577483 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
107577417 CTACTGTGTT
107577427 GCTTGGTCACTTGCATGCTACTGCATTATG
1 GCTTGGTCACTTGCATGCTACTGCATTATG
*
107577457 GCTTGGTCACTTGCATGCTGCTGCATT
1 GCTTGGTCACTTGCATGCTACTGCATT
107577484 GTTACCACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.37
Consensus pattern (30 bp):
GCTTGGTCACTTGCATGCTACTGCATTATG
Found at i:107581534 original size:43 final size:43
Alignment explanation
Indices: 107581481--107581658 Score: 207
Period size: 43 Copynumber: 4.2 Consensus size: 43
107581471 AAAAATGCCA
* *
107581481 CTAAAAACCATGACCTTTAGCGGCGCTTTTTTCACAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAACACCG
* *
107581524 CTAAAGACCATGACCTTTAGCGGCGTTTTTTTCACAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAACACCG
* * * ** *
107581567 CTAAAAACCATGACCTTTAGTGACTTTTTTTTTACAAACACCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAACACCG
* * * *
107581610 CT-ACGTAACA-AACCTTTAGCGGCGCTTTTCTCACAAACACCG
1 CTAAAG-ACCATGACCTTTAGCGGCGCTTTTTTCACAAACACCG
107581652 CTAAAGA
1 CTAAAGA
107581659 ATATAACCTT
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
42 29 0.25
43 85 0.75
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (43 bp):
CTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAACACCG
Found at i:107582864 original size:168 final size:168
Alignment explanation
Indices: 107582579--107582920 Score: 632
Period size: 168 Copynumber: 2.0 Consensus size: 168
107582569 ATGGCATGTA
107582579 ACCACATTGCACCAATCTCGTTCCCTGATTTCAACTTTTTTATTGAAAGAGAGAGCCAAACTTAG
1 ACCACATTGCACCAATCTCGTTCCCTGATTTCAACTTTTTTATTGAAAGAGAGAGCCAAACTTAG
* *
107582644 ATCACTTTGACATAACAAAAGAACATACCACCATGCAAAATCAGATAGTTTGCAAATTTTTATTT
66 ATCACTTTGACATAACAAAAGAACATACCACCATGCAAAATCAGACAGTTTGCAAATTTTCATTT
107582709 AAGTTTAAACGATAAAAGAGCATATAGCAGAAGATCAT
131 AAGTTTAAACGATAAAAGAGCATATAGCAGAAGATCAT
*
107582747 ACCACATTGCACCAATCTCGTTCCCTGATTTCAGCTTTTTTATTGAAAGAGAGAGCCAAACTTAG
1 ACCACATTGCACCAATCTCGTTCCCTGATTTCAACTTTTTTATTGAAAGAGAGAGCCAAACTTAG
107582812 ATCA-TTCTGACATAACAAAAGAACATACCACCATGCAAAATCAGACAGTTTGCAAATTTTCATT
66 ATCACTT-TGACATAACAAAAGAACATACCACCATGCAAAATCAGACAGTTTGCAAATTTTCATT
*
107582876 TAAGTTTAAATGATAAAAGAGCATATAGCAGAAGATCAT
130 TAAGTTTAAACGATAAAAGAGCATATAGCAGAAGATCAT
107582915 ACCACA
1 ACCACA
107582921 ATCAAATGCG
Statistics
Matches: 169, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
167 2 0.01
168 167 0.99
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (168 bp):
ACCACATTGCACCAATCTCGTTCCCTGATTTCAACTTTTTTATTGAAAGAGAGAGCCAAACTTAG
ATCACTTTGACATAACAAAAGAACATACCACCATGCAAAATCAGACAGTTTGCAAATTTTCATTT
AAGTTTAAACGATAAAAGAGCATATAGCAGAAGATCAT
Found at i:107585966 original size:42 final size:41
Alignment explanation
Indices: 107585920--107586007 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 41
107585910 AGTAATGGCC
107585920 TTTTTCCGGCATTTTCAACAAAAA-GCACCACTATAGTTTAAT
1 TTTTTCCGGCATTTTCAACAAAAATG--CCACTATAGTTTAAT
* * *
107585962 TTTTTGCGGCATTTTTAATAAAAATGCCACTATAGTTTAAT
1 TTTTTCCGGCATTTTCAACAAAAATGCCACTATAGTTTAAT
107586003 TTTTT
1 TTTTT
107586008 GTAGGGTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 20 0.48
42 21 0.50
43 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (41 bp):
TTTTTCCGGCATTTTCAACAAAAATGCCACTATAGTTTAAT
Found at i:107586008 original size:41 final size:41
Alignment explanation
Indices: 107585920--107586008 Score: 126
Period size: 41 Copynumber: 2.1 Consensus size: 41
107585910 AGTAATGGCC
*
107585920 TTTTTCCGGCATTTTCAACAAAAAGCACCACTATAGTTTAAT
1 TTTTTGCGGCATTTTCAACAAAAAG-ACCACTATAGTTTAAT
* *
107585962 TTTTTGCGGCATTTTTAATAAAAATG-CCACTATAGTTTAAT
1 TTTTTGCGGCATTTTCAACAAAAA-GACCACTATAGTTTAAT
107586003 TTTTTG
1 TTTTTG
107586009 TAGGGTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 21 0.49
42 21 0.49
43 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (41 bp):
TTTTTGCGGCATTTTCAACAAAAAGACCACTATAGTTTAAT
Found at i:107586160 original size:7 final size:7
Alignment explanation
Indices: 107586148--107586174 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
107586138 ATATGGACAA
107586148 AAATATT
1 AAATATT
107586155 AAATATT
1 AAATATT
107586162 AAATATT
1 AAATATT
107586169 AAATAT
1 AAATAT
107586175 ATTTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:107586186 original size:7 final size:7
Alignment explanation
Indices: 107586176--107586214 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
107586166 ATTAAATATA
107586176 TTTAATT
1 TTTAATT
107586183 TTTAATT
1 TTTAATT
107586190 TTTAATT
1 TTTAATT
107586197 TTTAATT
1 TTTAATT
107586204 TTTAAATT
1 TTT-AATT
107586212 TTT
1 TTT
107586215 TGAAGACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 24 0.77
8 7 0.23
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTAATT
Found at i:107586806 original size:14 final size:15
Alignment explanation
Indices: 107586776--107586809 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
107586766 ACTTAACCCC
*
107586776 AAACCCCTAAGCCTT
1 AAACCCCTAACCCTT
107586791 AAACCCC-AACCCTT
1 AAACCCCTAACCCTT
107586805 AAACC
1 AAACC
107586810 ATAAATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.38, C:0.44, G:0.03, T:0.15
Consensus pattern (15 bp):
AAACCCCTAACCCTT
Found at i:107586814 original size:21 final size:22
Alignment explanation
Indices: 107586770--107586814 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
107586760 CCTAACACTT
* *
107586770 AACCCCAAACCCCTAAGCCTTA
1 AACCCCAAACCCCTAAACCATA
*
107586792 AACCCC-AACCCTTAAACCATA
1 AACCCCAAACCCCTAAACCATA
107586813 AA
1 AA
107586815 TCATAATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.42, C:0.42, G:0.02, T:0.13
Consensus pattern (22 bp):
AACCCCAAACCCCTAAACCATA
Found at i:107586898 original size:14 final size:14
Alignment explanation
Indices: 107586854--107586892 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
107586844 TCATACACTT
107586854 TAAACCCTAAATCA
1 TAAACCCTAAATCA
*
107586868 TATACCCTAAATCA
1 TAAACCCTAAATCA
107586882 TAAACCCTAAA
1 TAAACCCTAAA
107586893 CTATAATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:107587031 original size:14 final size:14
Alignment explanation
Indices: 107586991--107587032 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
107586981 CACTAATTAA
*
107586991 TCTAAACCCTAAAC
1 TCTAAACCTTAAAC
*
107587005 TCATAATCCTTAAAC
1 TC-TAAACCTTAAAC
107587020 TCTAAACCTTAAA
1 TCTAAACCTTAAA
107587033 TCCTAAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
TCTAAACCTTAAAC
Found at i:107587710 original size:116 final size:116
Alignment explanation
Indices: 107587502--107587760 Score: 394
Period size: 116 Copynumber: 2.2 Consensus size: 116
107587492 TATTTTTTGT
* * *
107587502 GGCG-TTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGTTCAATACAAAATGATGTCGTTTTGCAA
1 GGCGTTTTTTAAAAAGCGCCGCTAAAGGCACTAAAAGTTCAATACAAAATGACGTCGGTTTGCAA
* ** * *
107587566 AATTATTTAGCGGCGTTTTTTGAAAAACGCTGCTAAAGATTGAGCATTAGC
66 AATTATTTAGCGGCGTCTTTCAAAAAACGCCGCTAAAGATCGAGCATTAGC
* *
107587617 GGCGTTTTTTAAAAAGCGCTGCTAAAGGCACTAAAAGTTCAATACAAAATGACGTTGGTTTGCAA
1 GGCGTTTTTTAAAAAGCGCCGCTAAAGGCACTAAAAGTTCAATACAAAATGACGTCGGTTTGCAA
* *
107587682 AATTATTTAGTGGTGTCTTTCAAAAAACGCCGCTAAAGATCGAGCATTAGC
66 AATTATTTAGCGGCGTCTTTCAAAAAACGCCGCTAAAGATCGAGCATTAGC
*
107587733 GGTGTTTTTTAAAAAGCGCCGCTAAAGG
1 GGCGTTTTTTAAAAAGCGCCGCTAAAGG
107587761 TGTACCTATA
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
115 4 0.03
116 125 0.97
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (116 bp):
GGCGTTTTTTAAAAAGCGCCGCTAAAGGCACTAAAAGTTCAATACAAAATGACGTCGGTTTGCAA
AATTATTTAGCGGCGTCTTTCAAAAAACGCCGCTAAAGATCGAGCATTAGC
Found at i:107589025 original size:42 final size:42
Alignment explanation
Indices: 107588962--107589088 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
107588952 CTTTGTTTTC
** * *
107588962 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
107589005 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
107589046 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
107589087 TC
1 TC
107589089 TCACTGATGT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:107589183 original size:31 final size:31
Alignment explanation
Indices: 107589148--107589419 Score: 399
Period size: 31 Copynumber: 8.8 Consensus size: 31
107589138 CTTGTCACTA
*
107589148 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
107589179 GTAGCC-AGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
* *
107589210 GTACCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
107589241 GTACCCGGAGCTACCACTTTTCACT-ATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
107589271 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
107589302 GTAGCTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
107589333 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
107589364 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
107589395 GTAACTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
107589420 TGTCATTTGT
Statistics
Matches: 222, Mismatches: 12, Indels: 14
0.90 0.05 0.06
Matches are distributed among these distances:
30 32 0.14
31 187 0.84
32 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:107589294 original size:123 final size:124
Alignment explanation
Indices: 107589148--107589419 Score: 415
Period size: 123 Copynumber: 2.2 Consensus size: 124
107589138 CTTGTCACTA
* *
107589148 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCAG-AGCTACCATTTTTCACTGATCAGGT
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAG-CAGAAGCTACCACTTTTCACTGATCAGGT
* * *
107589212 ACCCGGAGCTACCACTTTTCACTGATCAGGTACCCGGAGCTACCACTTTTCACT-ATCAG
65 ACCCGGAACTACCACTTTTCACTGATCAGGTACCAGAAGCTACCACTTTTCACTGATCAG
*
107589271 GTAGCCGGAA-CTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGT
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGT
* *
107589335 AGCCGGAACTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
65 ACCCGGAACTACCACTTTTCACTGATCAGGTACCAGAAGCTACCACTTTTCACTGATCAG
* *
107589395 GTAACTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
107589420 TGTCATTTGT
Statistics
Matches: 135, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
122 2 0.01
123 106 0.79
124 27 0.20
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (124 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
CCCGGAACTACCACTTTTCACTGATCAGGTACCAGAAGCTACCACTTTTCACTGATCAG
Found at i:107589506 original size:50 final size:51
Alignment explanation
Indices: 107589401--107589523 Score: 178
Period size: 50 Copynumber: 2.4 Consensus size: 51
107589391 TCAGGTAACT
* * *
107589401 GAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCT
1 GAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
* *
107589452 GAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATTAGATAAGTGTAGCC
1 GAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGTGTAGCC
107589502 GAAGCTATCACTTATCACTTGT
1 GAAGCTATCACTTATCACTTGT
107589524 TGCCATGGTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 43 0.66
51 22 0.34
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (51 bp):
GAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
Found at i:107594916 original size:15 final size:16
Alignment explanation
Indices: 107594882--107594916 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
107594872 AGTGTACTAG
*
107594882 AATTGTAATGAAATAA
1 AATTATAATGAAATAA
107594898 AATTATAATGAAA-AA
1 AATTATAATGAAATAA
107594913 AATT
1 AATT
107594917 TTACACTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (16 bp):
AATTATAATGAAATAA
Found at i:107595109 original size:3 final size:3
Alignment explanation
Indices: 107595047--107595090 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
107595037 TTTAGATAGA
107595047 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
107595091 AATTTTAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:107595179 original size:14 final size:15
Alignment explanation
Indices: 107595148--107595194 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
107595138 TTCATATTAT
*
107595148 AATATAATGATTATTA
1 AATATAAT-ATTAATA
107595164 AATATAAT-TTAATA
1 AATATAATATTAATA
*
107595178 AAAATAATCATTAATA
1 AATATAAT-ATTAATA
107595194 A
1 A
107595195 TTTAATAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 12 0.44
16 15 0.56
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
AATATAATATTAATA
Found at i:107596187 original size:19 final size:19
Alignment explanation
Indices: 107596160--107596196 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
107596150 AATTTCTGAA
107596160 AAATAATTTACTTTTTTGG
1 AAATAATTTACTTTTTTGG
* *
107596179 AAATGATTTATTTTTTTG
1 AAATAATTTACTTTTTTG
107596197 ATATTTGGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.57
Consensus pattern (19 bp):
AAATAATTTACTTTTTTGG
Found at i:107609539 original size:52 final size:53
Alignment explanation
Indices: 107609411--107609576 Score: 189
Period size: 52 Copynumber: 3.2 Consensus size: 53
107609401 TCTTACACGG
* * * *
107609411 ATCACATAACATACCGATGCCACATCCCAGATATGGTCTTTTAC-GGAATCGCATT
1 ATCACAT--CATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCGCA-T
*
107609466 ATCACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACTCG-A-
1 ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-TCGCAT
** *
107609518 ATCACATTGTACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAAGC-CAT
1 ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCGCAT
107609569 ATCACATC
1 ATCACATC
107609577 TTTTCCGTCA
Statistics
Matches: 97, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
50 2 0.02
51 11 0.11
52 39 0.40
53 30 0.31
54 5 0.05
55 10 0.10
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (53 bp):
ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCGCAT
Found at i:107610409 original size:11 final size:12
Alignment explanation
Indices: 107610389--107610419 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
107610379 GGAGAGGATA
107610389 AAGAAAAAAATG
1 AAGAAAAAAATG
107610401 AAGAAAAAAATG
1 AAGAAAAAAATG
107610413 AAGAAAA
1 AAGAAAA
107610420 CTCTAGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (12 bp):
AAGAAAAAAATG
Found at i:107611949 original size:6 final size:6
Alignment explanation
Indices: 107611938--107611970 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
107611928 GTCAAGGATG
107611938 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGG
1 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGG
107611971 AAGATCGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (6 bp):
GGGGAA
Found at i:107616696 original size:20 final size:20
Alignment explanation
Indices: 107616671--107616710 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
107616661 ATTTAAGTAT
107616671 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
107616691 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
107616711 AATAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
TAAAAGATATTTATTAATTA
Found at i:107616950 original size:20 final size:18
Alignment explanation
Indices: 107616921--107616965 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
107616911 AACGAAAAGC
107616921 AGGG-AAAGAAAGAAAGAA
1 AGGGAAAAGAAAG-AAGAA
107616939 AGGAGAAAAGAAAGAAGAA
1 AGG-GAAAAGAAAGAAGAA
107616958 AGGGAAAA
1 AGGGAAAA
107616966 TTGAAGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 9 0.36
20 8 0.32
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAGAAGAA
Found at i:107619207 original size:27 final size:22
Alignment explanation
Indices: 107619156--107619207 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
107619146 GATGGTAACT
107619156 TTTTATTTTTACTTTACTTAAA
1 TTTTATTTTTACTTTACTTAAA
*
107619178 TTTTATTTTTACTTTACTTAAG
1 TTTTATTTTTACTTTACTTAAA
107619200 TTTTATTT
1 TTTTATTT
107619208 ACTTAATTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTATTTTTACTTTACTTAAA
Found at i:107619210 original size:15 final size:16
Alignment explanation
Indices: 107619184--107619213 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
107619174 TAAATTTTAT
107619184 TTTTACTTTACTTAAG
1 TTTTACTTTACTTAAG
107619200 TTTTA-TTTACTTAA
1 TTTTACTTTACTTAA
107619214 TTACTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.60
Consensus pattern (16 bp):
TTTTACTTTACTTAAG
Found at i:107622345 original size:27 final size:27
Alignment explanation
Indices: 107622307--107622752 Score: 568
Period size: 27 Copynumber: 16.4 Consensus size: 27
107622297 CGTACCTGAA
107622307 CCCTTATGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
* *
107622334 CCCTCATGTGATAAAATAACGATTTTTG
1 CCCTTATGTGATAAAATGACGA-TTTTG
*
107622362 CCCTTATGTGATAAAATGATGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
* * * *
107622389 CCCTCATGTGATAAAAAGATGATTTTA
1 CCCTTATGTGATAAAATGACGATTTTG
* * * *
107622416 CCCTCATGTGATAAAATGATGTTTTTCT
1 CCCTTATGTGATAAAATGACGATTTT-G
* *
107622444 CCCTCATGTGATAAAATGACGATTTTT
1 CCCTTATGTGATAAAATGACGATTTTG
*
107622471 CCCTTATGTGATAAAATGACGATTTTA
1 CCCTTATGTGATAAAATGACGATTTTG
* *
107622498 CCCTCATGTGATAAAATGACGATTTTA
1 CCCTTATGTGATAAAATGACGATTTTG
* * * *
107622525 CCCTTATATGATAAAATAATGATTTTT
1 CCCTTATGTGATAAAATGACGATTTTG
*
107622552 CCCTCATGTGATAAAATGACGATTTTTG
1 CCCTTATGTGATAAAATGACGA-TTTTG
* *
107622580 CCCTTATGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGACGATTTTG
107622607 CCCTTATGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
** *
107622634 CCCTTACATGATAAAATGACAAATTTTG
1 CCCTTATGTGATAAAATGAC-GATTTTG
*
107622662 CCCTTATGTGATAAAATGAAGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
* *
107622689 CCCTAATGTGATAAAATGACGATTTTT
1 CCCTTATGTGATAAAATGACGATTTTG
* * *
107622716 CTCTCATGTGATAAAATGATGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
107622743 CCCTTATGTG
1 CCCTTATGTG
107622753 TTTTGCCTTT
Statistics
Matches: 368, Mismatches: 47, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
27 273 0.74
28 95 0.26
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACGATTTTG
Found at i:107622420 original size:82 final size:82
Alignment explanation
Indices: 107622307--107622752 Score: 576
Period size: 82 Copynumber: 5.5 Consensus size: 82
107622297 CGTACCTGAA
* *
107622307 CCCTTATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATAACGATTTTTGCCCTTATGTG
1 CCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGTG
* *
107622372 ATAAAATGATGATTTTG
66 ATAAAATGACGATTTTT
* * * * * *
107622389 CCCTCATGTGATAAAAAGATGATTTTACCCTCATGTGATAAAATGATG-TTTTTCTCCCTCATGT
1 CCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTT-GCCCTTATGT
107622453 GATAAAATGACGATTTTT
65 GATAAAATGACGATTTTT
* * * *
107622471 CCCTTATGTGATAAAATGACGATTTTACCCTCATGTGATAAAATGACGA-TTTTACCCTTATATG
1 CCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGTG
* *
107622535 ATAAAATAATGATTTTT
66 ATAAAATGACGATTTTT
* *
107622552 CCCTCATGTGATAAAATGACGATTTTTGCCCTTATGTGATAAAATGATGATTTTT-CCCTTATGT
1 CCCTCATGTGATAAAATGACGA-TTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGT
*
107622616 GATAAAATGACGATTTTG
65 GATAAAATGACGATTTTT
* ** * * * *
107622634 CCCTTACATGATAAAATGACAAATTTTGCCCTTATGTGATAAAATGAAGA-TTTTGCCCTAATGT
1 CCCTCATGTGATAAAATGAC-GATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGT
107622698 GATAAAATGACGATTTTT
65 GATAAAATGACGATTTTT
* * *
107622716 CTCTCATGTGATAAAATGATGATTTTGCCCTTATGTG
1 CCCTCATGTGATAAAATGACGATTTTGCCCTCATGTG
107622753 TTTTGCCTTT
Statistics
Matches: 318, Mismatches: 40, Indels: 13
0.86 0.11 0.04
Matches are distributed among these distances:
81 69 0.22
82 244 0.77
83 5 0.02
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (82 bp):
CCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGTG
ATAAAATGACGATTTTT
Found at i:107622502 original size:109 final size:109
Alignment explanation
Indices: 107622306--107622752 Score: 628
Period size: 109 Copynumber: 4.1 Consensus size: 109
107622296 GCGTACCTGA
* *
107622306 ACCCTTATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATAACGATTTTTGCCCTTATGT
1 ACCCTTATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGT
* * * *
107622371 GATAAAATGATGATTTTGCCCTCATGTGATAAAAAGATGATTTT
66 GATAAAATGACGATTTTTCCCTCATGTGATAAAATGACGATTTT
* * *
107622415 ACCCTCATGTGATAAAATGATGTTTTTCTCCCTCATGTGATAAAATGACGATTTTT-CCCTTATG
1 ACCCTTATGTGATAAAATGATGATTTT-GCCCTCATGTGATAAAATGACGATTTTTGCCCTTATG
*
107622479 TGATAAAATGACGATTTTACCCTCATGTGATAAAATGACGATTTT
65 TGATAAAATGACGATTTTTCCCTCATGTGATAAAATGACGATTTT
* * *
107622524 ACCCTTATATGATAAAATAATGATTTTTCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGT
1 ACCCTTATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGT
* *
107622589 GATAAAATGATGATTTTTCCCTTATGTGATAAAATGACGATTTT
66 GATAAAATGACGATTTTTCCCTCATGTGATAAAATGACGATTTT
* ** ** * * *
107622633 GCCCTTACATGATAAAATGACAAATTTTGCCCTTATGTGATAAAATGAAGA-TTTTGCCCTAATG
1 ACCCTTATGTGATAAAATGA-TGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATG
* *
107622697 TGATAAAATGACGATTTTTCTCTCATGTGATAAAATGATGATTTT
65 TGATAAAATGACGATTTTTCCCTCATGTGATAAAATGACGATTTT
*
107622742 GCCCTTATGTG
1 ACCCTTATGTG
107622753 TTTTGCCTTT
Statistics
Matches: 304, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
108 28 0.09
109 225 0.74
110 51 0.17
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (109 bp):
ACCCTTATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTTGCCCTTATGT
GATAAAATGACGATTTTTCCCTCATGTGATAAAATGACGATTTT
Found at i:107622795 original size:27 final size:27
Alignment explanation
Indices: 107622765--107622829 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
107622755 TTGCCTTTTT
* *
107622765 TGATAAAATGACTATTTTACCCTTATG
1 TGATCAAATGACAATTTTACCCTTATG
*
107622792 TGATCAAATGACAATTTTGCCCTTATG
1 TGATCAAATGACAATTTTACCCTTATG
107622819 TGATCAAATGA
1 TGATCAAATGA
107622830 TCGAAATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (27 bp):
TGATCAAATGACAATTTTACCCTTATG
Found at i:107622841 original size:27 final size:26
Alignment explanation
Indices: 107622782--107622867 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 26
107622772 ATGACTATTT
*
107622782 TACCCTTATGTGATCAAATGAC-AATTT
1 TACCCTTATGTGATCAAATGACGAA--A
*
107622809 TGCCCTTATGTGATCAAATGATCGAAA
1 TACCCTTATGTGATCAAATGA-CGAAA
* *
107622836 TACCCTTATAG-GGTAAAATGACCGAAA
1 TACCCTTAT-GTGATCAAATGA-CGAAA
107622863 TACCC
1 TACCC
107622868 CCATAGGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
27 46 0.92
28 2 0.04
29 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (26 bp):
TACCCTTATGTGATCAAATGACGAAA
Found at i:107622842 original size:95 final size:95
Alignment explanation
Indices: 107622670--107622844 Score: 217
Period size: 95 Copynumber: 1.8 Consensus size: 95
107622660 TGCCCTTATG
* * * *
107622670 TGATAAAATGAAGATTTTGCCCTAATGTGATAAAATGACGATTTTTCTCTCATGTGATAAAATGA
1 TGATAAAATGAAGATTTTACCCTAATGTGATAAAATGACAATTTTGCCCTCATGTGATAAAATGA
** *
107622735 TGATTTTGCCCTTATGTGTTTTGCCTTTTT
66 TGATAATACCCTTATGTGTTTTGCCTTTTT
** * * * *
107622765 TGATAAAATGACTATTTTACCCTTATGTGATCAAATGACAATTTTGCCCTTATGTGATCAAATGA
1 TGATAAAATGAAGATTTTACCCTAATGTGATAAAATGACAATTTTGCCCTCATGTGATAAAATGA
107622830 TCGA-AATACCCTTAT
66 T-GATAATACCCTTAT
107622845 AGGGTAAAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
95 64 0.97
96 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (95 bp):
TGATAAAATGAAGATTTTACCCTAATGTGATAAAATGACAATTTTGCCCTCATGTGATAAAATGA
TGATAATACCCTTATGTGTTTTGCCTTTTT
Found at i:107622993 original size:23 final size:22
Alignment explanation
Indices: 107622946--107623001 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
107622936 CTATATTTGA
107622946 GCATGCCATGTTATATGTATATT
1 GCAT-CCATGTTATATGTATATT
*
107622969 GCATCCATGTATGATAT-TATGTT
1 GCATCCATGT-T-ATATGTATATT
107622992 GCATCGCATG
1 GCATC-CATG
107623002 GGGTGGGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.21
23 15 0.52
24 8 0.28
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (22 bp):
GCATCCATGTTATATGTATATT
Found at i:107623280 original size:18 final size:18
Alignment explanation
Indices: 107623254--107623322 Score: 79
Period size: 18 Copynumber: 3.8 Consensus size: 18
107623244 GTTTGCATTT
107623254 TGCACTGATTACTGTTAC
1 TGCACTGATTACTGTTAC
* *
107623272 TGCATTGATCA-TGGTTAC
1 TGCACTGATTACT-GTTAC
*
107623290 TGCACTGATTACTGCTAC
1 TGCACTGATTACTGTTAC
107623308 TGCTACT-ATTACTGT
1 TGC-ACTGATTACTGT
107623323 AATGGGCCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.02
18 37 0.88
19 4 0.10
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (18 bp):
TGCACTGATTACTGTTAC
Found at i:107629944 original size:27 final size:27
Alignment explanation
Indices: 107629906--107629957 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
107629896 TTCTACAGAC
107629906 AGTTTGAAATGTGTTGTTAGCGGAGAG
1 AGTTTGAAATGTGTTGTTAGCGGAGAG
*
107629933 AGTTTGAAATGTGTTGTTAGTGGAG
1 AGTTTGAAATGTGTTGTTAGCGGAG
107629958 TACTAATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.02, G:0.37, T:0.37
Consensus pattern (27 bp):
AGTTTGAAATGTGTTGTTAGCGGAGAG
Found at i:107631382 original size:2 final size:2
Alignment explanation
Indices: 107631375--107631423 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
107631365 AATCTAACCT
* * *
107631375 TA TA TA TA TT TA TT TC TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107631416 TA TA TA TA
1 TA TA TA TA
107631424 AATTTTTGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:107631496 original size:21 final size:19
Alignment explanation
Indices: 107631461--107631515 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
107631451 TTTTTTAACC
*
107631461 TTATTTTTA-TATTATATA
1 TTATTTATATTATTATATA
*
107631479 TTATAATTATTTTATTATATA
1 TTAT--TTATATTATTATATA
107631500 TTATTTATATTATTAT
1 TTATTTATATTATTAT
107631516 TATCTACTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.13
19 11 0.35
20 3 0.10
21 13 0.42
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTATTTATATTATTATATA
Found at i:107631499 original size:16 final size:16
Alignment explanation
Indices: 107631470--107631518 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
107631460 CTTATTTTTA
107631470 TATTATATATTATA-AT
1 TATT-TATATTATATAT
107631486 TATTT-TATTATATAT
1 TATTTATATTATATAT
107631501 TATTTATATTAT-TAT
1 TATTTATATTATATAT
107631516 TAT
1 TAT
107631519 CTACTGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 10 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:107631504 original size:3 final size:3
Alignment explanation
Indices: 107631461--107631518 Score: 50
Period size: 3 Copynumber: 19.3 Consensus size: 3
107631451 TTTTTTAACC
* *
107631461 TTA TTT TTA -TA TTA TATA TTA TAA TTA TT- TTA TTA TATA TTA TT-
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
107631505 TATA TTA TTA TTA T
1 T-TA TTA TTA TTA T
107631519 CTACTGTATA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
2 5 0.11
3 33 0.73
4 7 0.16
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:107631634 original size:19 final size:20
Alignment explanation
Indices: 107631592--107631634 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
107631582 TGTTTTTACT
*
107631592 TGTA-TTATATATTTATTAA
1 TGTATTTATATATATATTAA
107631611 T-TATTTATATATATATT-A
1 TGTATTTATATATATATTAA
107631629 TGTATT
1 TGTATT
107631635 ATTTTTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (20 bp):
TGTATTTATATATATATTAA
Found at i:107631931 original size:28 final size:27
Alignment explanation
Indices: 107631893--107631964 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
107631883 TCTAAACTTA
*
107631893 TATTTATATATATTATATA-ATTATTTTAT
1 TATTT-TATATATTATATACA-TACTTT-T
* *
107631922 TATTTTATATATTCTTTTACATACTTTT
1 TATTTTATATATT-ATATACATACTTTT
107631950 TATTTTATATATTAT
1 TATTTTATATATTAT
107631965 TTTTTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
27 1 0.03
28 22 0.59
29 13 0.35
30 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (27 bp):
TATTTTATATATTATATACATACTTTT
Found at i:107644351 original size:205 final size:205
Alignment explanation
Indices: 107643993--107644577 Score: 884
Period size: 206 Copynumber: 2.8 Consensus size: 205
107643983 TAGGCCGCAG
* ** * * *
107643993 CATAACAGATCTGGCCTTCAGATGCTTATACTGAAGCAGATCCAAGATGGTTTGGCATCTTTGTA
1 CATAGCAGATCTAACCTTCAGATG-ATATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* * ** *
107644058 CTTACAAGAAAAAAAATCGAAGACATAGCTGATTTGGCTTTCACGTATTTACGTTGAAGAAAATC
65 CTTACAAG-GAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATC
107644123 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCAT-TTCGAC
129 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCATATTCGAC
* *
107644187 GGAGAGTAGATA
194 GGAGAGCAGACA
* *
107644199 CATAGCAGATCTCACCTTCAGATGATATCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
1 CATAGCAGATCTAACCTTCAGATGATAT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
*
107644264 CTTATAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCT
65 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCT
* * * *
107644329 AAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGTATCTCCATATTCGATG
130 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCATATTCGACG
*
107644394 GAGGGCAGACA
195 GAGAGCAGACA
*
107644405 CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTAACCTTCAGATGA-TATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* * * * *
107644470 CTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCACGTGCTTACGCTAAAGCAAATCT
65 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCT
107644535 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
130 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
107644578 AAGCAGATTT
Statistics
Matches: 345, Mismatches: 31, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
205 109 0.32
206 234 0.68
207 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (205 bp):
CATAGCAGATCTAACCTTCAGATGATATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTA
AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCATATTCGACGG
AGAGCAGACA
Found at i:107646131 original size:2 final size:2
Alignment explanation
Indices: 107646124--107646187 Score: 73
Period size: 2 Copynumber: 34.0 Consensus size: 2
107646114 AATCTAACCC
* * *
107646124 TA TA TA TA TT TA TT TC TA T- TA T- TA T- TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107646162 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
107646188 AATTTTTGAT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
1 4 0.08
2 49 0.92
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:107646245 original size:7 final size:7
Alignment explanation
Indices: 107646233--107646294 Score: 56
Period size: 7 Copynumber: 8.7 Consensus size: 7
107646223 CCTTATTTTC
107646233 ATATTAT
1 ATATTAT
107646240 ATATTAT
1 ATATTAT
107646247 A-ATTATT
1 ATATTA-T
*
107646254 TTATTAT
1 ATATTAT
107646261 ATATTATTT
1 ATATTA--T
107646270 ATATTAT
1 ATATTAT
107646277 -TATTAT
1 ATATTAT
* *
107646283 CTATTGT
1 ATATTAT
107646290 ATATT
1 ATATT
107646295 GTTTTTCAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
6 10 0.22
7 25 0.54
8 4 0.09
9 7 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (7 bp):
ATATTAT
Found at i:107646263 original size:16 final size:16
Alignment explanation
Indices: 107646234--107646282 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
107646224 CTTATTTTCA
107646234 TATTATATATTATA-AT
1 TATT-TATATTATATAT
107646250 TATTT-TATTATATAT
1 TATTTATATTATATAT
107646265 TATTTATATTAT-TAT
1 TATTTATATTATATAT
107646280 TAT
1 TAT
107646283 CTATTGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 10 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:107646268 original size:3 final size:3
Alignment explanation
Indices: 107646234--107646346 Score: 54
Period size: 3 Copynumber: 36.0 Consensus size: 3
107646224 CTTATTTTCA
*
107646234 TAT TAT ATAT TAT AAT TAT T-T TAT TAT ATAT TAT T-T ATAT TAT TAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT
* * * * * *
107646280 TAT CTAT TGT ATAT TGT TTT TCAAA AAT TAT TAT TAT T-T TA- CAT TAT
1 TAT -TAT TAT -TAT TAT TAT T--AT TAT TAT TAT TAT TAT TAT TAT TAT
107646327 TACT TAT ATAT TAT TAT TAT
1 TA-T TAT -TAT TAT TAT TAT
107646347 GTTTTTACTT
Statistics
Matches: 84, Mismatches: 13, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
2 6 0.07
3 60 0.71
4 18 0.21
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:107646271 original size:19 final size:20
Alignment explanation
Indices: 107646234--107646279 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
107646224 CTTATTTTCA
*
107646234 TATTATATATTATAATTATTT
1 TATTATATATTAT-ATTATAT
107646255 TATTATATATTAT-TTATAT
1 TATTATATATTATATTATAT
107646274 TATTAT
1 TATTAT
107646280 TATCTATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 11 0.46
21 13 0.54
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTATATATTATATTATAT
Found at i:107646287 original size:19 final size:19
Alignment explanation
Indices: 107646234--107646294 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
107646224 CTTATTTTCA
*
107646234 TATTATATATTATAATTATTT
1 TATTATATATTAT--TTATAT
107646255 TATTATATATTATTTATAT
1 TATTATATATTATTTATAT
107646274 TATTAT-TATCTATTGTATAT
1 TATTATATAT-TATT-TATAT
107646294 T
1 T
107646295 GTTTTTCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 3 0.08
19 15 0.41
20 6 0.16
21 13 0.35
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTATATATTATTTATAT
Found at i:107646342 original size:30 final size:30
Alignment explanation
Indices: 107646236--107646391 Score: 113
Period size: 30 Copynumber: 5.0 Consensus size: 30
107646226 TATTTTCATA
*
107646236 TTATATATTATAATTATTTTATTATATATTAT
1 TTATATATTATTATTATTTTA-TAT-TATTAT
* *
107646268 TTATATTATTATTATCTATTGTATATTGTT-T
1 TTATA-TATTATTAT-TATTTTATATTATTAT
* * * *
107646299 TTCAAAAATTATTATTATTTTACATTATTAC
1 TT-ATATATTATTATTATTTTATATTATTAT
* *
107646330 TTATATATTATTATTATGTT-T-TTACTTGT
1 TTATATATTATTATTATTTTATATTA-TTAT
107646359 ATTATATATTTATTAATTA-TTTATATATATTAT
1 -TTATATA-TTATT-ATTATTTTATAT-TATTAT
107646392 GTTTTTTTTT
Statistics
Matches: 96, Mismatches: 17, Indels: 21
0.72 0.13 0.16
Matches are distributed among these distances:
28 3 0.03
29 2 0.02
30 33 0.34
31 20 0.21
32 15 0.16
33 15 0.16
34 8 0.08
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (30 bp):
TTATATATTATTATTATTTTATATTATTAT
Done.