Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 385 of 427
Found at i:111951333 original size:61 final size:62
Alignment explanation
Indices: 111951251--111951368 Score: 143
Period size: 62 Copynumber: 1.9 Consensus size: 62
111951241 AACTTAACAA
111951251 TTTTTTCTTAATTTGACACTTAATCT-TTTTTGGGTCAAATTTGGTACATGAACTTGACTCTT
1 TTTTTTCTTAATTTGACACTTAATCTATTTTT-GGTCAAATTTGGTACATGAACTTGACTCTT
* * ** *
111951313 TTTTTTC-TAATTT-AGTACTTAATCTAGTTTTTTGTCTGATTTGGTACCTGAACTTG
1 TTTTTTCTTAATTTGA-CACTTAATCTA-TTTTTGGTCAAATTTGGTACATGAACTTG
111951369 TTAAACGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
60 1 0.02
61 15 0.31
62 27 0.56
63 5 0.10
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52
Consensus pattern (62 bp):
TTTTTTCTTAATTTGACACTTAATCTATTTTTGGTCAAATTTGGTACATGAACTTGACTCTT
Found at i:111951577 original size:22 final size:21
Alignment explanation
Indices: 111951542--111951590 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
111951532 TAAAATAATG
* *
111951542 AAAATTTTTATTTTGGATTTTA
1 AAAATTCTTATTTT-CATTTTA
* *
111951564 AAAATTCTTGTTTTCTTTTTA
1 AAAATTCTTATTTTCATTTTA
111951585 AAAATT
1 AAAATT
111951591 AATTCGTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (21 bp):
AAAATTCTTATTTTCATTTTA
Found at i:111952293 original size:89 final size:88
Alignment explanation
Indices: 111952025--111953891 Score: 651
Period size: 88 Copynumber: 20.7 Consensus size: 88
111952015 GAAAAAAATT
* * * *
111952025 CAAGTGACCCAAAAATGAAATGTAATAAATAGTAATTATTATAATTATTTC-AGAAAATAAAAAA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGA-AAAATAAAAAA
* * *
111952089 TTATTGAAACACTA-AACTCAAGCC
65 TTATTGTAGCACCAGAA-TCAAGCC
* * ** * * *
111952113 TAAGTGTCCTAAAAATTAAATGAAATATAA-AGTAATTATTATAATCATTCTGAAAAAT--AAAA
1 CAAGTGCCCCGAAAATGAAATGAAATA-AATAGTAATTATTATAATTATTCCGAAAAATAAAAAA
* *
111952175 TTATTGTAGCTCTAGAATCAAGCC
65 TTATTGTAGCACCAGAATCAAGCC
* * *
111952199 CAAGTGCCCCCGAAAATGAAATGAAACT-AATGGTAACTACTATAATTATTCCGAAAAATAAAAA
1 CAAGTG-CCCCGAAAATGAAATGAAA-TAAATAGTAATTATTATAATTATTCCGAAAAATAAAAA
***
111952263 ATTATTGTAGTTTCAGAATCAAGCC
64 ATTATTGTAGCACCAGAATCAAGCC
* * ** * *
111952288 CAAGTGCCCCAAAAATGAAATAAAATAAATAGTAACAATTAAAATTATTCC---AAA-AAAAATT
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGAAAAATAAAAAAT
* * * *
111952349 TATTGCAACACCAGACTCAAGTC
66 TATTGTAGCACCAGAATCAAGCC
* * * * * * * *
111952372 TATGTTCCTCG---A--AAATGAAATCAATAGTAAATATTATAATTATTCCAAAAGTTAAAAAAA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCC-GAA---AAATAAA
*
111952432 AAATTCTTGTAGCACCA-AATTCAAGCC
62 AAATTATTGTAGCACCAGAA-TCAAGCC
* * * * * *
111952459 CAAGTGCCTCGAAAATGGAATGAAATAAATGGTAATTGTTATAATTATTTCGGAAAATAAAAAAT
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGAAAAATAAAAAAT
** *
111952524 ATATTGTAGCACCAGGCTCAAACC
66 -TATTGTAGCACCAGAATCAAGCC
* * * * * *
111952548 CTAGTGCCTCGAAAAT-ATAATGAAATAAATTGTAATTATTATAACTATTTCGAAAAATAAAAAC
1 CAAGTGCCCCGAAAATGA-AATGAAATAAATAGTAATTATTATAATTATTCCGAAAAATAAAAAA
* * *
111952612 TTATTG-CGTCATCAGACTCAAGCC
65 TTATTGTAG-CACCAGAATCAAGCC
* * ** * * *
111952636 CAAGTGTCCTGAAAATGAAATGAAGGAAATTGTAATTATTATAATTATTTCAAAAAATAAGAAAA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGAAAAAT-A-AAAA
* * * * *
111952701 ATTATTGCAACAACATATTCAAGCC
64 ATTATTGTAGCACCAGAATCAAGCC
** * * * **
111952726 CAAGTGCCATGAAAATGAAATGATATAAATTGTAATTTTTATAATTATTTTGAAAAATTAAAAAA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGAAAAA-T---AAA
* * * *
111952791 AAATTATTGCAACGCCAGACTCAAGCC
62 AAATTATTGTAGCACCAGAATCAAGCC
* *
111952818 CAAGTG-CCCGAAAAATGAAATGAAATATATAACT-ATTATTATAATTATTCC-ATAAAATAAAA
1 CAAGTGCCCCG-AAAATGAAATGAAATAAAT-AGTAATTATTATAATTATTCCGA-AAAATAAAA
** * * *
111952880 TAAAAATTGTAGAAGCA-AACTCAAAGTC
63 -AATTATTGTAGCACCAGAA-TC-AAGCC
* * *
111952908 CAAGTGCCTCAAAAATGAAATGAAATAGATTTTAATTATTGTAATTATTGTAATTATTCC-AGAA
1 CAAGTGCCCCGAAAATGAAATGAAAT--A----AA-TA--GTAATTATTATAATTATTCCGA-AA
* *
111952972 AATAAAAAA--AGTTGTTGCACCA-AACTCAAGCT
56 AATAAAAAATTA-TTGTAGCACCAGAA-TCAAGCC
* * * * *
111953004 CAAGTGCCCTGAAAAT-AATATCAAATACATGGTAATTACTT-TAATTATTTC-AGAAAAT-AAA
1 CAAGTGCCCCGAAAATGAA-ATGAAATAAATAGTAATTA-TTATAATTATTCCGA-AAAATAAAA
* * * * * *
111953065 AATTGTTATCTGCACCAGACTTAATCC
63 AATTATTGT-AGCACCAGAATCAAGCC
* * * * * * * * * *
111953092 CAAGTACCCCGAAAAT-CAATAGAAATTAATATTATTTCTTATAATAAATCTGAAAATTTTAAAA
1 CAAGTGCCCCGAAAATGAAAT-GAAATAAATAGTAATTATTATAATTATTCCGAAAA--ATAAAA
* * * * *
111953156 TTATTATTGTAACAGCAGACTCAAGTC
63 -AATTATTGTAGCACCAGAATCAAGCC
* * ** * * *
111953183 CAAGT-ACCCAAAAATGAAACCAAATAAATAGT-GTTGATTGTAATTATTCCAAAAAAATTAAAA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATT-ATTATAATTATTCC-GAAAAA-T---A
** ** * *
111953246 AAAGAAACATTGTAGCATAAGACTCAAACC
60 AAA-AATTATTGTAGCACCAGAATCAAGCC
* * * * * * ** *
111953276 CAAAT-ACCCAAAAATGAAATAAAATAAATAATAATTATTATAATAATTCTAAAAAAAATTAAAA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTC--CGAAAAATAAAAA
** * * **
111953340 ATATATATGTTATTTTAACCCTTGACTCAAATC
64 AT-TAT-TG-TA---GCA-CC-AGAATCAAGCC
* ** ** *
111953373 GAAGTGCCCTTAAAATGAAAT-ATAATAAATAGTGTTTATTATAATTATTCCGTAAAATTAGAAA
1 CAAGTGCCCCGAAAATGAAATGA-AATAAATAGTAATTATTATAATTATTCCG-AAAAATA-AAA
* * * * ***
111953437 ATATTATTGCAACACCATACTCAAATT
63 A-ATTATTGTAGCACCAGAATCAAGCC
* * * * * * * * * * *
111953464 TAAGTGCCTC-AAATAAGAAATTAAATTAATAATGATTCTTATAATTAATCTGGAAAATTTTTAA
1 CAAGTGCCCCGAAA-ATGAAATGAAATAAATAGTAATTATTATAATTATTC-CGAAAA---ATAA
* ** *
111953528 AAATATTATTGCAATA-CA-AACCTCAAGCT
61 AAA-ATTATTGTAGCACCAGAA--TCAAGCC
* * * * *
111953557 CAAGTGCTCCAAAAATAAAATGAAATAAATTA-TAATTATTATAATTATTTCAAAAAATAAAAAT
1 CAAGTGCCCCGAAAATGAAATGAAATAAA-TAGTAATTATTATAATTATTCCGAAAAATAAAAA-
* * * *
111953621 TTTATTTGT-GCACTA-AATTTAAGCT
64 ATTA-TTGTAGCACCAGAA-TCAAGCC
* * * * *
111953646 CAAGCGTCTCGAAAATGAAATGAAATACATAATAATTATTATAATTATTCCGTAAACTAAATATA
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCG--AA--AAATA-A
* * **
111953711 TATATATATATATAT-TATTGCACTAGACTCAATTC
61 -A-A-A-AT-TAT-TGTA--GCACCAGAATCAAGCC
* * * * * * *
111953746 CAAATACCCTGAAAATG-AATAGAAATAAAGAGTAATTATTATCATTATACTGAAAAATAGAAAA
1 CAAGTGCCCCGAAAATGAAAT-GAAATAAATAGTAATTATTATAATTATTCCGAAAAAT--AAAA
* * *
111953810 AATTATT-TCAGCATCA-AACTTAAGCT
63 AATTATTGT-AGCACCAGAA-TCAAGCC
* * * * * *
111953836 TAATTG-CCC-AAAATAAAATGAAATAAATTGTAATTATTATAATTATTTCGTAAAAT
1 CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGAAAAAT
111953892 TAAAGAAAAT
Statistics
Matches: 1344, Mismatches: 314, Indels: 242
0.71 0.17 0.13
Matches are distributed among these distances:
79 29 0.02
81 1 0.00
84 28 0.02
85 3 0.00
86 38 0.03
87 102 0.08
88 247 0.18
89 192 0.14
90 150 0.11
91 87 0.06
92 117 0.09
93 126 0.09
94 19 0.01
95 5 0.00
96 32 0.02
97 40 0.03
98 51 0.04
99 31 0.02
100 45 0.03
101 1 0.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (88 bp):
CAAGTGCCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTCCGAAAAATAAAAAAT
TATTGTAGCACCAGAATCAAGCC
Found at i:111952913 original size:182 final size:176
Alignment explanation
Indices: 111952036--111952956 Score: 616
Period size: 182 Copynumber: 5.2 Consensus size: 176
111952026 AAGTGACCCA
* * *
111952036 AAAATGAAATGTAATAAATAGTAATTATTATAATTATTTC-AGAAAATAAAAAATTATTGAAACA
1 AAAATGAAATGAAATAAATTGTAATTATTATAATTATTTCGA-AAAATAAAAAATTATTGCAACA
* * * ** * *
111952100 CTAAACTCAAGCCTAAGTGTCCTAAAAATTAAATGAAATATAA-AGTAATTATTATAATCA-TTC
65 CCAGACTCAAGCCCAAGTG-CCCGAAAATGAAATGAAATA-AATAGTAATTATTATAATTATTTC
* * ** *
111952163 TGAAAAAT--AAAATTATTGTAG-CTCTAGAA-TC-AAGCCCAAGTGCCCCCG
128 -AAAAAATAAAAAAATATTGTAGAAAC-A-AACTCAAAGCCCAAGTG-CCTCG
* * * * * ***
111952211 AAAATGAAATGAAACT-AATGGTAACTACTATAATTATTCCGAAAAATAAAAAATTATTGTAGTT
1 AAAATGAAATGAAA-TAAATTGTAATTATTATAATTATTTCGAAAAATAAAAAATTATTGCAACA
* * * * ** *
111952275 TCAGAATCAAGCCCAAGTGCCCCAAAAATGAAATAAAATAAATAGTAACAATTAAAATTA-TTC-
65 CCAGACTCAAGCCCAAGTG-CCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTTCA
* ** * * * * * * *
111952338 -CAAA-AAAAATTTATTGCA-ACACCAGACTC-AAGTCTATGTTCCTCG
129 AAAAATAAAAAAATATTGTAGA-AACAAACTCAAAGCCCAAGTGCCTCG
* * * * * * *
111952383 AAAATGAAAT-CAAT--A--GTAAATATTATAATTATTCCAAAAGTTAAAAAAAAAATTCTTGTA
1 AAAATGAAATGAAATAAATTGTAATTATTATAATTATTTC-GAA---AAATAAAAAATTATTGCA
* * * * * *
111952443 GCACCAAATTCAAGCCCAAGTGCCTCGAAAATGGAATGAAATAAATGGTAATTGTTATAATTATT
62 ACACCAGACTCAAGCCCAAGTGCC-CGAAAATGAAATGAAATAAATAGTAATTATTATAATTATT
** * * ** *
111952508 TCGGAAAATAAAAAATATATTGTAGCACCAGGCTCAAA-CCCTAGTGCCTCG
126 TCAAAAAATAAAAAA-ATATTGTAGAAACAAACTCAAAGCCCAAGTGCCTCG
* * **
111952559 AAAAT-ATAATGAAATAAATTGTAATTATTATAACTATTTCGAAAAATAAAAACTTATTGCGTCA
1 AAAATGA-AATGAAATAAATTGTAATTATTATAATTATTTCGAAAAATAAAAAATTATTGCAACA
* * ** *
111952623 TCAGACTCAAGCCCAAGTGTCCTGAAAATGAAATGAAGGAAATTGTAATTATTATAATTATTTCA
65 CCAGACTCAAGCCCAAGTG-CCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTTCA
* * *
111952688 AAAAATAAGAAAAATTATTGCA-ACAACATATTC-AAGCCCAAGTGCCAT-G
129 AAAAATAA-AAAAA-TATTGTAGA-AACAAACTCAAAGCCCAAGTGCC-TCG
* * *
111952737 AAAATGAAATGATATAAATTGTAATTTTTATAATTATTTTGAAAAATTAAAAAAAAATTATTGCA
1 AAAATGAAATGAAATAAATTGTAATTATTATAATTATTTCGAAAAA-T---AAAAAATTATTGCA
* * *
111952802 ACGCCAGACTCAAGCCCAAGTGCCCGAAAAATGAAATGAAATATATAACT-ATTATTATAATTAT
62 ACACCAGACTCAAGCCCAAGTGCCCG-AAAATGAAATGAAATAAAT-AGTAATTATTATAATTAT
* * * * * *
111952866 TCCATAAAATAAAATAAAAATTGTAGAAGCAAACTCAAAGTCCAAGTGCCTCA
125 TTCAAAAAATAAAA-AAATATTGTAGAAACAAACTCAAAGCCCAAGTGCCTCG
* * *
111952919 AAAATGAAATGAAATAGATTTTAATTATTGTAATTATT
1 AAAATGAAATGAAATAAATTGTAATTATTATAATTATT
111952957 GTAATTATTC
Statistics
Matches: 582, Mismatches: 121, Indels: 79
0.74 0.15 0.10
Matches are distributed among these distances:
167 18 0.03
168 2 0.00
169 1 0.00
170 3 0.01
171 65 0.11
172 21 0.04
173 20 0.03
174 6 0.01
175 104 0.18
176 32 0.05
177 82 0.14
178 67 0.12
179 4 0.01
180 2 0.00
181 34 0.06
182 120 0.21
183 1 0.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (176 bp):
AAAATGAAATGAAATAAATTGTAATTATTATAATTATTTCGAAAAATAAAAAATTATTGCAACAC
CAGACTCAAGCCCAAGTGCCCGAAAATGAAATGAAATAAATAGTAATTATTATAATTATTTCAAA
AAATAAAAAAATATTGTAGAAACAAACTCAAAGCCCAAGTGCCTCG
Found at i:111952954 original size:9 final size:9
Alignment explanation
Indices: 111952940--111952965 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
111952930 AAATAGATTT
111952940 TAATTATTG
1 TAATTATTG
111952949 TAATTATTG
1 TAATTATTG
111952958 TAATTATT
1 TAATTATT
111952966 CCAGAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
TAATTATTG
Found at i:111953030 original size:96 final size:99
Alignment explanation
Indices: 111952852--111953052 Score: 218
Period size: 96 Copynumber: 2.1 Consensus size: 99
111952842 ATATATAACT
* *
111952852 ATTATTATAATTATTCCATAAAATAAAATAAAAATTGTAGAAGCAAACTCAAAGTCCAAGTGCCT
1 ATTATTATAATTATTCCAGAAAATAAAATAAAAATTGTAGAACCAAACTCAAAGTCCAAGTGCCT
* * **
111952917 CAAAAATGAAATGAAATAGATTTTAATTA-TTGTA
66 CAAAAATGAAATCAAATACATGGTAATTACTT-TA
* * * *
111952951 ATTATTGTAATTATTCCAGAAAAT-AAA-AAAAGTTGTTGCACCAAACTC-AAG-CTCAAGTGCC
1 ATTATTATAATTATTCCAGAAAATAAAATAAAAATTGTAGAACCAAACTCAAAGTC-CAAGTGCC
*
111953012 -CTGAAAAT-AATATCAAATACATGGTAATTACTTTA
65 TC-AAAAATGAA-ATCAAATACATGGTAATTACTTTA
111953047 ATTATT
1 ATTATT
111953053 TCAGAAAATA
Statistics
Matches: 87, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
95 4 0.05
96 39 0.45
97 19 0.22
98 3 0.03
99 22 0.25
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.32
Consensus pattern (99 bp):
ATTATTATAATTATTCCAGAAAATAAAATAAAAATTGTAGAACCAAACTCAAAGTCCAAGTGCCT
CAAAAATGAAATCAAATACATGGTAATTACTTTA
Found at i:111954149 original size:25 final size:25
Alignment explanation
Indices: 111954115--111954172 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
111954105 ATATATCTTG
111954115 ATTTATTATTAAGCAGACAATTAATT
1 ATTT-TTATTAAGCAGACAATTAATT
*
111954141 ATTTTTATTAAGCAGAGAATTAATT
1 ATTTTTATTAAGCAGACAATTAATT
111954166 ATTTTTA
1 ATTTTTA
111954173 CTTATTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 27 0.87
26 4 0.13
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (25 bp):
ATTTTTATTAAGCAGACAATTAATT
Found at i:111955981 original size:6 final size:6
Alignment explanation
Indices: 111955970--111955999 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
111955960 GATACACTCT
111955970 TGCTCC TGCTCC TGCTCC TGCTCC TGCTCC
1 TGCTCC TGCTCC TGCTCC TGCTCC TGCTCC
111956000 CACTTGGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.17, T:0.33
Consensus pattern (6 bp):
TGCTCC
Found at i:111965598 original size:22 final size:20
Alignment explanation
Indices: 111965573--111965613 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
111965563 TAAATGAAAT
111965573 AAAAGAAACAAAAGCATAAAAC
1 AAAAGAAAC-AAAGC-TAAAAC
111965595 AAAAGAAACAAAGCTAAAA
1 AAAAGAAACAAAGCTAAAA
111965614 GAAACAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.73, C:0.12, G:0.10, T:0.05
Consensus pattern (20 bp):
AAAAGAAACAAAGCTAAAAC
Found at i:111966063 original size:17 final size:18
Alignment explanation
Indices: 111966041--111966076 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
111966031 TAAATGAGTT
111966041 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
111966058 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
111966076 A
1 A
111966077 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:111969185 original size:46 final size:44
Alignment explanation
Indices: 111969081--111969188 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
111969071 TGTCTTTGAC
** * * *
111969081 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
111969125 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
111969171 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
111969189 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:111975317 original size:46 final size:44
Alignment explanation
Indices: 111975213--111975320 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
111975203 TGTCTTTGAC
** * * *
111975213 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
111975257 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
111975303 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
111975321 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:111981364 original size:56 final size:54
Alignment explanation
Indices: 111981269--111981425 Score: 181
Period size: 56 Copynumber: 2.8 Consensus size: 54
111981259 TTTGATGACA
* * *
111981269 TGATACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATTATG
1 TGATACATGCTAGGTCC-GGAGCTTATGTAGCCCTGTTGAGAGGC-TGTAATAATG
* * **
111981325 TGGTACACGCTAGGTCCGAGAGCTTATGTAGCCCTGTTGAGAGG-TGTGGTAATG
1 TGATACATGCTAGGTCCG-GAGCTTATGTAGCCCTGTTGAGAGGCTGTAATAATG
*
111981379 TGATGCATGCTAGGTCCGGATGCTCATATGTAGCCCTGTTGAGAGGC
1 TGATACATGCTAGGTCCGGA-GCT--TATGTAGCCCTGTTGAGAGGC
111981426 GTGCTATTTC
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
53 2 0.02
54 25 0.29
55 1 0.01
56 58 0.67
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.28
Consensus pattern (54 bp):
TGATACATGCTAGGTCCGGAGCTTATGTAGCCCTGTTGAGAGGCTGTAATAATG
Found at i:111983944 original size:22 final size:23
Alignment explanation
Indices: 111983883--111983948 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 23
111983873 ATTCTATTAT
*
111983883 TAGCACGTTAAGTGCTCTCTGTA
1 TAGCACGTTTAGTGCTCTCTGTA
* * *
111983906 TAGCACGTCT-GTACTCTTTGTA
1 TAGCACGTTTAGTGCTCTCTGTA
111983928 TAGCAC-TTTAGTGCTCTCTGT
1 TAGCACGTTTAGTGCTCTCTGT
111983949 TCGTTTATGC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
21 2 0.06
22 25 0.71
23 8 0.23
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (23 bp):
TAGCACGTTTAGTGCTCTCTGTA
Found at i:111986062 original size:33 final size:33
Alignment explanation
Indices: 111986015--111986129 Score: 133
Period size: 33 Copynumber: 3.5 Consensus size: 33
111986005 GGACCTTTCT
* * * *
111986015 TTTTCTAGTTGTACACCCGAGGTGCACATTCCC
1 TTTTCAAGTTGTACACACGAAGTGCACATACCC
* *
111986048 TTTTCAAGTGGTACACACGAAGTGTACATACCC
1 TTTTCAAGTTGTACACACGAAGTGCACATACCC
* * * *
111986081 TTTTCAATTTGTATACACAAAGTGCACATAACC
1 TTTTCAAGTTGTACACACGAAGTGCACATACCC
111986114 TTTTCAAG-TGTACACA
1 TTTTCAAGTTGTACACA
111986130 TGTAGTGTAC
Statistics
Matches: 68, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
32 7 0.10
33 61 0.90
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (33 bp):
TTTTCAAGTTGTACACACGAAGTGCACATACCC
Found at i:111986160 original size:65 final size:66
Alignment explanation
Indices: 111986036--111986168 Score: 178
Period size: 65 Copynumber: 2.0 Consensus size: 66
111986026 TACACCCGAG
** * *
111986036 GTGCACATTCCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTATACACAA
1 GTGCACATAACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTATACACAA
111986101 A
66 A
* * * **
111986102 GTGCACATAACCTTTTCAAGT-GTACACATGTAGTGTACCTTTCCTTTTCAAGTGGTATACACAA
1 GTGCACATAACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTATACACAA
111986166 A
66 A
111986167 GT
1 GT
111986169 ATACATTTCC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
65 39 0.67
66 19 0.33
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (66 bp):
GTGCACATAACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTATACACAA
A
Found at i:111986181 original size:65 final size:66
Alignment explanation
Indices: 111986039--111986218 Score: 175
Period size: 65 Copynumber: 2.7 Consensus size: 66
111986029 ACCCGAGGTG
* * *
111986039 CACATTCCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTATACACAAAGT
1 CACATTACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTATACACAAAGT
*
111986104 G
66 A
* * * * **
111986105 CACATAACCTTTTCAAGT-GTACACATGTAGTGTACCTTTCCTTTTCAAGTGGTATACACAAAGT
1 CACATTACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTATACACAAAGT
111986169 A
66 A
* * * * * * * *
111986170 TACATTTCCTTTTCTTA-TGGTATACACAAAGTATACCTAACCTTTTCAA
1 CACATTACCTTTTC-AAGTGGTACACACGAAGTGTACATACCCTTTTCAA
111986219 ATTGTACGAT
Statistics
Matches: 91, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
65 51 0.56
66 40 0.44
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (66 bp):
CACATTACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTATACACAAAGT
A
Found at i:111986183 original size:33 final size:33
Alignment explanation
Indices: 111986040--111986201 Score: 148
Period size: 33 Copynumber: 4.9 Consensus size: 33
111986030 CCCGAGGTGC
* *
111986040 ACATTCCCTTTTCAAGTGGTACACACGAAGTGT
1 ACATTCCCTTTTCAAGTGGTATACACAAAGTGT
* * * *
111986073 ACATACCCTTTTCAATTTGTATACACAAAGTGC
1 ACATTCCCTTTTCAAGTGGTATACACAAAGTGT
** * ***
111986106 ACATAACCTTTTCAAGT-GTACACATGTAGTGT
1 ACATTCCCTTTTCAAGTGGTATACACAAAGTGT
* * *
111986138 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
1 ACATTCCCTTTTCAAGTGGTATACACAAAGTGT
* *
111986171 ACATTTCCTTTTCTTA-TGGTATACACAAAGT
1 ACATTCCCTTTTC-AAGTGGTATACACAAAGT
111986202 ATACCTAACC
Statistics
Matches: 104, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
32 24 0.23
33 79 0.76
34 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (33 bp):
ACATTCCCTTTTCAAGTGGTATACACAAAGTGT
Found at i:111986214 original size:33 final size:33
Alignment explanation
Indices: 111986154--111986216 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
111986144 CCTTTTCAAG
**
111986154 TGGTATACACAAAGTATACATTTCCTTTTCTTA
1 TGGTATACACAAAGTATACATAACCTTTTCTTA
*
111986187 TGGTATACACAAAGTATACCTAACCTTTTC
1 TGGTATACACAAAGTATACATAACCTTTTC
111986217 AAATTGTACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (33 bp):
TGGTATACACAAAGTATACATAACCTTTTCTTA
Found at i:112004248 original size:17 final size:17
Alignment explanation
Indices: 112004228--112004262 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
112004218 ACATAATATT
112004228 AAAATCTAAAAAATAAAA
1 AAAAT-TAAAAAATAAAA
*
112004246 AAAATTAAAAATTAAAA
1 AAAATTAAAAAATAAAA
112004263 TACAGAGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAATTAAAAAATAAAA
Found at i:112005417 original size:3 final size:3
Alignment explanation
Indices: 112005409--112005453 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
112005399 AGAAGACAAC
112005409 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
112005454 GAGATGGGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:112008327 original size:16 final size:15
Alignment explanation
Indices: 112008290--112008328 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
112008280 CTATTCTTTT
*
112008290 ATAAGTAATATATTA
1 ATAATTAATATATTA
112008305 ATAAATTAATATAATTA
1 AT-AATTAATAT-ATTA
112008322 ATAATTA
1 ATAATTA
112008329 CTTTGGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 13 0.62
17 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
ATAATTAATATATTA
Found at i:112008748 original size:21 final size:22
Alignment explanation
Indices: 112008716--112008763 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
112008706 TTAACAATAA
*
112008716 ATTAATTTAAAATTTTAAAAAT
1 ATTAATTTAAAATATTAAAAAT
*
112008738 ATTAA-TTAAAATATTGAAAAT
1 ATTAATTTAAAATATTAAAAAT
*
112008759 GTTAA
1 ATTAA
112008764 AATAACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
ATTAATTTAAAATATTAAAAAT
Found at i:112013110 original size:7 final size:8
Alignment explanation
Indices: 112013097--112013124 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
112013087 TTCAGAGATT
112013097 TTTTTTTA
1 TTTTTTTA
112013105 TTTTTTTA
1 TTTTTTTA
112013113 TTTTTTTA
1 TTTTTTTA
112013121 TTTT
1 TTTT
112013125 ACAAAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:112014079 original size:23 final size:23
Alignment explanation
Indices: 112014007--112014081 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 23
112013997 CCTGATCAGT
** *
112014007 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
*
112014029 A-ACGGCACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
112014049 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
112014072 ATACGACACA
1 ATACGACACA
112014082 TAAAGTGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.02
21 32 0.73
22 1 0.02
23 10 0.23
ACGTcount: A:0.37, C:0.27, G:0.23, T:0.13
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:112014089 original size:23 final size:23
Alignment explanation
Indices: 112014007--112014093 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
112013997 CCTGATCAGT
*
112014007 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * *
112014029 A-ACGGCACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
112014049 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
112014072 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
112014094 TCAGTAAAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.60
22 1 0.02
23 19 0.36
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:112016405 original size:38 final size:38
Alignment explanation
Indices: 112016362--112016657 Score: 250
Period size: 46 Copynumber: 6.9 Consensus size: 38
112016352 CTGATATGAA
**
112016362 ATGTGTAAGACCATGGTTGAAAGATACCATGATAACCT
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCT
*
112016400 CTGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T
112016443 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCT
1 ---ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCT
*
112016484 GTGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T
*
112016527 GAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACCTGATAT
1 ---ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T
*
112016573 GAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACCTGATAT
1 ---ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T
112016619 GAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 ---ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
112016658 ATGACAGAAA
Statistics
Matches: 233, Mismatches: 9, Indels: 24
0.88 0.03 0.09
Matches are distributed among these distances:
38 70 0.30
41 1 0.00
43 2 0.01
46 160 0.69
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (38 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCT
Found at i:112016458 original size:46 final size:46
Alignment explanation
Indices: 112016401--112016701 Score: 449
Period size: 46 Copynumber: 6.7 Consensus size: 46
112016391 TGATAACCTC
112016401 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
112016447 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
112016485 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
112016531 TGTGTAAGATCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
112016577 TGTGTAAGATCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
112016623 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
112016669 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
112016702 TCACGTCAAA
Statistics
Matches: 236, Mismatches: 10, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
38 36 0.15
41 2 0.01
43 2 0.01
45 1 0.00
46 195 0.83
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.24
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:112016489 original size:84 final size:84
Alignment explanation
Indices: 112016352--112016657 Score: 486
Period size: 84 Copynumber: 3.5 Consensus size: 84
112016342 AGTGTGCTCT
** *
112016352 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGATAACCTCTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
112016417 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
112016436 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
112016501 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
112016520 CTGATATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---TGTGTAAG
*
112016585 ATCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
*
112016612 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
112016658 ATGACAGAAA
Statistics
Matches: 207, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
84 127 0.61
89 2 0.01
92 78 0.38
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:112017007 original size:23 final size:25
Alignment explanation
Indices: 112016962--112017008 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
112016952 AATAAATATA
*
112016962 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
112016987 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
112017009 ATAAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:112020854 original size:44 final size:44
Alignment explanation
Indices: 112020791--112020878 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
112020781 ATCATTGCAA
112020791 AATGCAAAGTTCAAAAGAAAAAAAAGAAAAGAAGAGGAAACGAT
1 AATGCAAAGTTCAAAAGAAAAAAAAGAAAAGAAGAGGAAACGAT
112020835 AATGCAAAGTTCAAAAGAAAAAAAAGAAAAGAAGAGGAAACGAT
1 AATGCAAAGTTCAAAAGAAAAAAAAGAAAAGAAGAGGAAACGAT
112020879 CCATTATTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.64, C:0.07, G:0.20, T:0.09
Consensus pattern (44 bp):
AATGCAAAGTTCAAAAGAAAAAAAAGAAAAGAAGAGGAAACGAT
Found at i:112024948 original size:7 final size:7
Alignment explanation
Indices: 112024932--112024973 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
112024922 CTCCTTGTCG
*
112024932 CCTTTTC
1 CCTTTGC
112024939 CCTTTGC
1 CCTTTGC
112024946 CCTTTGC
1 CCTTTGC
112024953 CCTTTGC
1 CCTTTGC
112024960 CCTTTGC
1 CCTTTGC
112024967 CCTTTGC
1 CCTTTGC
112024974 ATTTAGTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.00, C:0.43, G:0.12, T:0.45
Consensus pattern (7 bp):
CCTTTGC
Found at i:112037401 original size:39 final size:39
Alignment explanation
Indices: 112037347--112037425 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
112037337 ATCTAATGAG
*
112037347 TATGTGGTTTTGTTTTGAAATTGGTACTCATAAATGTTT
1 TATGTCGTTTTGTTTTGAAATTGGTACTCATAAATGTTT
112037386 TATGTCGTTTTGTTTTGAAATTGGTACTCATAAATGTTT
1 TATGTCGTTTTGTTTTGAAATTGGTACTCATAAATGTTT
112037425 T
1 T
112037426 CTATTTTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (39 bp):
TATGTCGTTTTGTTTTGAAATTGGTACTCATAAATGTTT
Found at i:112042766 original size:3 final size:3
Alignment explanation
Indices: 112042754--112042811 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
112042744 TCCTACTTTC
112042754 CTT C-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
112042801 CTT CTT CTT CT
1 CTT CTT CTT CT
112042812 ACTTTAACTA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:112043881 original size:22 final size:22
Alignment explanation
Indices: 112043856--112043899 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
112043846 TAGTCATATA
112043856 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
112043878 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
112043900 TGTTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:112043937 original size:13 final size:14
Alignment explanation
Indices: 112043919--112043960 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
112043909 TTTCAATTTT
112043919 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
112043932 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
112043947 ATTTTAAATAATAT
1 ATTTT-AATAATAT
112043961 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:112043945 original size:16 final size:16
Alignment explanation
Indices: 112043923--112043959 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
112043913 AATTTTATTT
112043923 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
112043940 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
112043955 TAATA
1 TAATA
112043960 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:112044012 original size:15 final size:15
Alignment explanation
Indices: 112043992--112044048 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
112043982 ATTCTATATT
112043992 AATATTTTAATAATA
1 AATATTTTAATAATA
*
112044007 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
112044026 AATATATTAATAATA
1 AATATTTTAATAATA
112044041 AATATTTT
1 AATATTTT
112044049 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 18 0.53
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:112044108 original size:25 final size:25
Alignment explanation
Indices: 112044080--112044130 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
112044070 GTCATAAGTC
112044080 TATGTACACTTCACATATTTGTAAT
1 TATGTACACTTCACATATTTGTAAT
112044105 TATGTACACTTCACATATTTGTAAT
1 TATGTACACTTCACATATTTGTAAT
112044130 T
1 T
112044131 TAGTCTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (25 bp):
TATGTACACTTCACATATTTGTAAT
Found at i:112044436 original size:13 final size:13
Alignment explanation
Indices: 112044414--112044447 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
112044404 GTTTATTTAA
112044414 TTAA-AAATATTT
1 TTAAGAAATATTT
*
112044426 TTATGAAATATTT
1 TTAAGAAATATTT
112044439 TTAAGAAAT
1 TTAAGAAAT
112044448 TTACCAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (13 bp):
TTAAGAAATATTT
Found at i:112044557 original size:14 final size:13
Alignment explanation
Indices: 112044520--112044545 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
112044510 TTAGAAAAAT
112044520 AAATTATTTTTTA
1 AAATTATTTTTTA
112044533 AAATTATTTTTTA
1 AAATTATTTTTTA
112044546 GATTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AAATTATTTTTTA
Found at i:112047598 original size:17 final size:16
Alignment explanation
Indices: 112047578--112047636 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 16
112047568 GAAGTGTAAT
112047578 AAAATAAAATAAATGCA
1 AAAATAAAATAAATG-A
* *
112047595 AAAATAAATTTAAT--
1 AAAATAAAATAAATGA
112047609 AAAATAAAATAAATGGA
1 AAAATAAAATAAAT-GA
*
112047626 TAAATAAAATA
1 AAAATAAAATA
112047637 TTTTTTTAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 12 0.35
17 22 0.65
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (16 bp):
AAAATAAAATAAATGA
Found at i:112047612 original size:31 final size:31
Alignment explanation
Indices: 112047574--112047633 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
112047564 ATATGAAGTG
112047574 TAATAAAATAAAATAAATGCAAAAATAAATT
1 TAATAAAATAAAATAAATGCAAAAATAAATT
* *
112047605 TAATAAAATAAAATAAATGGATAAATAAA
1 TAATAAAATAAAATAAATGCAAAAATAAA
112047634 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (31 bp):
TAATAAAATAAAATAAATGCAAAAATAAATT
Found at i:112048704 original size:46 final size:47
Alignment explanation
Indices: 112048637--112048755 Score: 159
Period size: 47 Copynumber: 2.6 Consensus size: 47
112048627 CTTCACATAA
* * * *
112048637 TGATGCCATAGCCCAGCTATGGTCTTACACA-TATCAAATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCAAATATCACAC
* * *
112048683 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCAAATATCACAC
*
112048730 CGATGCCATATCCCAGATATGGTCTT
1 TGATGCCATATCCCAGATATGGTCTT
112048756 GTACGGAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
46 27 0.43
47 36 0.57
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGTAGCAAATATCACAC
Found at i:112048823 original size:31 final size:31
Alignment explanation
Indices: 112048786--112048895 Score: 177
Period size: 31 Copynumber: 3.5 Consensus size: 31
112048776 TTGTAGTCGA
*
112048786 AGCTACCACTATTCACTAATCAGGTAGCCGG
1 AGCTACCACTTTTCACTAATCAGGTAGCCGG
112048817 TA-CTACCACTTTTCACTAATCAGGTAGCCGG
1 -AGCTACCACTTTTCACTAATCAGGTAGCCGG
* *
112048848 AGCTACCACTTTTCACTGATCAGGTAGCCGA
1 AGCTACCACTTTTCACTAATCAGGTAGCCGG
112048879 AGCTACCACTTTTCACT
1 AGCTACCACTTTTCACT
112048896 TGTCATTTGT
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
30 1 0.01
31 72 0.97
32 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (31 bp):
AGCTACCACTTTTCACTAATCAGGTAGCCGG
Found at i:112048982 original size:50 final size:51
Alignment explanation
Indices: 112048871--112048999 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
112048861 CACTGATCAG
* * * *
112048871 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
* *
112048922 GTTGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAAATAAGT
112048972 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
112049000 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 42 0.61
51 27 0.39
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
Found at i:112051825 original size:30 final size:30
Alignment explanation
Indices: 112051791--112051850 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
112051781 TATTTTATTA
112051791 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
112051821 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
112051851 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:112056321 original size:18 final size:19
Alignment explanation
Indices: 112056300--112056337 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
112056290 TATAAGGATT
112056300 AAATTGAA-TAAAGAATAA
1 AAATTGAATTAAAGAATAA
* *
112056318 AAATTTAATTACAGAATAA
1 AAATTGAATTAAAGAATAA
112056337 A
1 A
112056338 GAAAAGTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (19 bp):
AAATTGAATTAAAGAATAA
Found at i:112056543 original size:13 final size:13
Alignment explanation
Indices: 112056525--112056549 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112056515 TAAAATAAAA
112056525 GAAATAAAGAAAT
1 GAAATAAAGAAAT
112056538 GAAATAAAGAAA
1 GAAATAAAGAAA
112056550 AAGGAAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (13 bp):
GAAATAAAGAAAT
Found at i:112057239 original size:3 final size:3
Alignment explanation
Indices: 112057231--112057287 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
112057221 GAATGGTAAG
112057231 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
112057279 CAT TAT TAT
1 TAT TAT TAT
112057288 GGTATTGAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:112057683 original size:6 final size:6
Alignment explanation
Indices: 112057668--112057711 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
112057658 GTACTTTGTG
* *
112057668 TACTGC TACTGT TACTGT TACTGT TACTGT TAC-GT TACTCT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
112057712 GGTGTATTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:112057880 original size:18 final size:18
Alignment explanation
Indices: 112057837--112057883 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
112057827 GACCGTCTGC
** *
112057837 TACTGAATAATTGACTGT
1 TACTGAATAAACGACTGA
112057855 TA-TAGAATAAACGACTGA
1 TACT-GAATAAACGACTGA
112057873 TACTGAATAAA
1 TACTGAATAAA
112057884 TGAATATTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.04
18 22 0.92
19 1 0.04
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.30
Consensus pattern (18 bp):
TACTGAATAAACGACTGA
Found at i:112058579 original size:37 final size:37
Alignment explanation
Indices: 112058537--112058611 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
112058527 ATGATAAGTG
*
112058537 TTTAAAGTTAAGTATTAGATAATATATAAAATGTGTT
1 TTTAAAGTTAAGTATTAGATAATATAAAAAATGTGTT
112058574 TTTAAAGTTAAGTATTAGATAATATAAAAAATGTGTT
1 TTTAAAGTTAAGTATTAGATAATATAAAAAATGTGTT
112058611 T
1 T
112058612 GGATTGGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.43
Consensus pattern (37 bp):
TTTAAAGTTAAGTATTAGATAATATAAAAAATGTGTT
Found at i:112059875 original size:33 final size:33
Alignment explanation
Indices: 112059810--112059879 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
112059800 CAGCCAACTA
*
112059810 CCACCTCAGTACTCCAATCATCCTGGCTCGTAT
1 CCACCTCAGTACTCCAATCATCCTGGCCCGTAT
* * *
112059843 CCACCTCAGTACTCTACTCCTTCC-GGCCCGTAT
1 CCACCTCAGTACTCCAAT-CATCCTGGCCCGTAT
112059876 CCAC
1 CCAC
112059880 AACCGTACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.19, C:0.44, G:0.11, T:0.26
Consensus pattern (33 bp):
CCACCTCAGTACTCCAATCATCCTGGCCCGTAT
Found at i:112060202 original size:82 final size:84
Alignment explanation
Indices: 112060093--112060248 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 84
112060083 AATAACTTCA
* * *
112060093 TATTTATGTAATGAATTTTTTGGCATTTTATTAATCAA-TTTAAGGCTTTTTTTTT-ACTTTGCA
1 TATTTATGTAATGAATTTTTTGCCATTTTATTAATCAATTTTAAGGCTTTTTTTTTAAATTTGAA
112060156 ATTTAAATAGTAAACTTTG
66 ATTTAAATAGTAAACTTTG
* * * *
112060175 TATTTATTTAATGAATTTTTTGCCATTTTATTTATCAATTTTATGGTTTTTTTTTTAAATTTGAA
1 TATTTATGTAATGAATTTTTTGCCATTTTATTAATCAATTTTAAGGCTTTTTTTTTAAATTTGAA
112060240 ATTTAAATA
66 ATTTAAATA
112060249 AATAGACTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
82 35 0.54
83 15 0.23
84 15 0.23
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (84 bp):
TATTTATGTAATGAATTTTTTGCCATTTTATTAATCAATTTTAAGGCTTTTTTTTTAAATTTGAA
ATTTAAATAGTAAACTTTG
Found at i:112075752 original size:3 final size:3
Alignment explanation
Indices: 112075744--112075771 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
112075734 AGCATTCCAC
112075744 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
112075772 TATGTGTCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:112084695 original size:47 final size:47
Alignment explanation
Indices: 112084586--112084696 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
112084576 CCGGGATAAG
*
112084586 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * * *
112084633 CACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
112084680 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
112084697 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:112086146 original size:30 final size:32
Alignment explanation
Indices: 112086112--112086174 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
112086102 TGAGGATGAA
*
112086112 TAATACAAATACTTG-A-AAATTAAGATTGAT
1 TAATACAAACACTTGAAGAAATTAAGATTGAT
*
112086142 TAATACAAACACTTGAAGAAATTGAGATTGAT
1 TAATACAAACACTTGAAGAAATTAAGATTGAT
112086174 T
1 T
112086175 CAAAACTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 14 0.48
31 1 0.03
32 14 0.48
ACGTcount: A:0.48, C:0.08, G:0.13, T:0.32
Consensus pattern (32 bp):
TAATACAAACACTTGAAGAAATTAAGATTGAT
Found at i:112095789 original size:13 final size:13
Alignment explanation
Indices: 112095771--112095802 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
112095761 ATAGTTTAAT
112095771 AATAAAATAAAGA
1 AATAAAATAAAGA
112095784 AATAAAATAAAGA
1 AATAAAATAAAGA
112095797 AATAAA
1 AATAAA
112095803 TGAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:112097112 original size:15 final size:15
Alignment explanation
Indices: 112097089--112097136 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
112097079 TATCAAATTT
112097089 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
112097104 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
112097119 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
112097133 ATAT
1 ATAT
112097137 ATTATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:112097687 original size:21 final size:23
Alignment explanation
Indices: 112097624--112097682 Score: 100
Period size: 23 Copynumber: 2.5 Consensus size: 23
112097614 AGGATTTATA
*
112097624 ATATTCCGAGTGTGTTTGGGTTGG
1 ATATTCTG-GTGTGTTTGGGTTGG
112097648 ATATTCTGGTGTGTTTGGGTTGG
1 ATATTCTGGTGTGTTTGGGTTGG
112097671 ATATTCTGGTGT
1 ATATTCTGGTGT
112097683 TTGGGAGGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 27 0.79
24 7 0.21
ACGTcount: A:0.12, C:0.07, G:0.36, T:0.46
Consensus pattern (23 bp):
ATATTCTGGTGTGTTTGGGTTGG
Found at i:112097813 original size:18 final size:19
Alignment explanation
Indices: 112097792--112097832 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
112097782 AATGAAATGA
112097792 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
112097810 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
112097829 GAAA
1 GAAA
112097833 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:112100661 original size:36 final size:35
Alignment explanation
Indices: 112100603--112100670 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
112100593 ATTCAACTTG
*
112100603 AATTTAATTTAAATAATAAAAAAACTTTAAAATTTA
1 AATTTAATTTAAATAATAAAAAAA-TATAAAATTTA
* *
112100639 AATTTAAATTT-AATTATGAAAAAATATAAAAT
1 AATTT-AATTTAAATAATAAAAAAATATAAAAT
112100671 AAATATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 7 0.25
36 16 0.57
37 5 0.18
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (35 bp):
AATTTAATTTAAATAATAAAAAAATATAAAATTTA
Found at i:112108710 original size:3 final size:3
Alignment explanation
Indices: 112108702--112108741 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
112108692 CATGGGACTA
112108702 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
112108742 GTATAATCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:112109927 original size:12 final size:11
Alignment explanation
Indices: 112109898--112109927 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
112109888 TTGTAAACAA
112109898 AAATAAAAAAG
1 AAATAAAAAAG
112109909 AAATAAAAAAG
1 AAATAAAAAAG
112109920 AAACTAAA
1 AAA-TAAA
112109928 GAACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (11 bp):
AAATAAAAAAG
Found at i:112110824 original size:138 final size:138
Alignment explanation
Indices: 112110575--112110905 Score: 502
Period size: 138 Copynumber: 2.4 Consensus size: 138
112110565 GTAAGCACAA
*
112110575 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTA
1 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
* *
112110640 GCTTCAATCTGTTCCATTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTGC
66 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAATCTACTCCACTGC
112110705 AACTTAAG
131 AACTTAAG
*
112110713 GGAGATAAGACTTGTAACTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTA
1 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
* * * * *
112110778 GCTTCAATCTGTTCTACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGC
66 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAATCTACTCCACTGC
*
112110843 AACTTCAG
131 AACTTAAG
* * * * *
112110851 GGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCA-AGGAGATAAGA
1 GGAGATAAGACTTG-TAACTTCGACCTGCTCTACTGCAACTTCAGA-GAGATAAGA
112110906 CTTATAACTT
Statistics
Matches: 175, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
138 142 0.81
139 33 0.19
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (138 bp):
GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAATCTACTCCACTGC
AACTTAAG
Found at i:112110966 original size:138 final size:135
Alignment explanation
Indices: 112110686--112111859 Score: 616
Period size: 138 Copynumber: 8.5 Consensus size: 135
112110676 GATTTACTAT
* * * * * * * * *
112110686 CTTCAGTCTACTCCACTGCAACTTAAGGGAGATAAGACTTG-TAACTTCGACCTGCTCTATTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* * * * * * *
112110750 ACTTC-AGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCTACTGCAACTTTAGGGAAATAA
66 ACTTCAAG-GAGATAAGA-CT-T-A--TAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAA
** *
112110814 GAT-TTGCTAT
125 GATCTTTTTAG
112110824 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
112110889 ACTTCAAGGAGATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTA
66 ACTTCAAGGAGATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-
112110954 TAATTTAG
130 T--TTTAG
* ** * * * * *
112110962 CTTCAATCTGTTCCACTATAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTTCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* * * *
112111027 ACTTCAGGGAGATAAGACTTGTAAGTTCGACCTGCTCTACTGTAACTTCAGAGAGATAAGATCTG
66 ACTTCAAGGAGATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-
112111092 TAATTTAG
130 T--TTTAG
* * * * * *
112111100 CTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATATTCAGTCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* * ** * *
112111165 ACTTCAGGGAGATAAGACTTGTAACTTCGACAAGTTCTACTGCAACTTCATAGAGATAAGA-C-T
66 ACTTCAAGGAGATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTT
* *
112111228 TGTAA
131 TTTAG
* * * * * *
112111233 CTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TAATTTAGCTTCAATCTGTTCCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-A--T--CTTCAATCTGCTCCA
* * * * * * * * *
112111297 CTGCAACTTCAGGGAAATATA-ATTTGCTATCTTC-AGTCTACTCCACTGCAACTTCAGGGAGAT
61 CTGCAACTTCAAGGAGATA-AGACTT-ATAACTTCGA-CCTGCTCTACTGCAACTTCAGAGAGAT
* *
112111360 AAGA-C-TTGTAA
123 AAGATCTTTTTAG
* * * * * * * *
112111371 CTTCGACCTACTCTATTGTAACTT-TGGAGAGATAAGATTTG-TAATTTAGCTTCAATCTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTCAGG-GAGATAAGATTTGCT-A--T--CTTCAATCTGCTCC
* * * * * * * * * *
112111434 ACTGCAACTTTAGGGAAATATGATTTGCTATCTTC-AGTCTGCTCCACTGCAACTTCAGGGAGAT
60 ACTGCAACTTCAAGGAGATAAGACTT-ATAACTTCGA-CCTGCTCTACTGCAACTTCAGAGAGAT
* *
112111498 AAGA-C-TTGTAA
123 AAGATCTTTTTAG
* * * * * * * *
112111509 CTTCGACCTGCTCTACTGCAACTTCAGTGAGATAAAATCTG-TAATTTAGCTTCAATCTGTTTCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-A--T--CTTCAATCTGCTCCA
* * * * * * * *
112111573 CTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCT-CTGCAACTTCA-AGGAGAT
61 CTGCAACTTCAAGGAGATAAGACTT-ATAACTTCGACCTGCT-CTACTGCAACTTCAGA-GAGAT
* *
112111636 AAGA-C-TTGTAA
123 AAGATCTTTTTAG
** * * * * *
112111647 CTTTGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TAATTTAGCTTCAATCTGTTCCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-A--T--CTTCAATCTGCTCCA
* * * * * * * *
112111711 CTGTAACTTCAGGGAAATAAGATTTGCTATCTTC-AGTCTGCTCCACTGCAACTTCA-AGAAGAT
61 CTGCAACTTCAAGGAGATAAGACTT-ATAACTTCGA-CCTGCTCTACTGCAACTTCAGAG-AGAT
* *
112111774 AAGA-C-TTGTAA
123 AAGATCTTTTTAG
* * * * ** * *
112111785 CTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTAGCTTCAATCTGTTCCAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTATCTTCAATCTGCTCCAC
112111850 TGCAACTTCA
62 TGCAACTTCA
112111860 GGAAAATATG
Statistics
Matches: 908, Mismatches: 100, Indels: 56
0.85 0.09 0.05
Matches are distributed among these distances:
132 1 0.00
133 36 0.04
134 34 0.04
135 3 0.00
136 2 0.00
137 40 0.04
138 752 0.83
139 35 0.04
140 3 0.00
142 1 0.00
143 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (135 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
ACTTCAAGGAGATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTT
TTTAG
Found at i:112111352 original size:276 final size:273
Alignment explanation
Indices: 112110779--112112195 Score: 1564
Period size: 276 Copynumber: 5.2 Consensus size: 273
112110769 TGTAATTTAG
* * * * * * * * *
112110779 CTTCAATCTGTTCTACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTGCTCTACTGCA
** * * * *
112110844 ACTTCAGG-GAGATAAGATT-TGCTAT-CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA
65 ACTTCAGGAGAGATAAGATTGTAATTTACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGA
* * * * * * * * *
112110906 CTTATAACTTC-GACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTAGCTTCAATC
130 TTTGTATCTTCAG-TCTGCTCCACTGCAACTTCA-AGAGATAAGA-C--T--TGTAACTTCGACC
* * ** * * * *
112110970 TGTTCCACTATAACTTCAG-GAAAATAAGAT-T-T-A-CTATCTTCAGTCTGCTT-CACTGCAAC
188 TGCTCTACTGCAACTTCAGAG-AGATAAGATCTGTAATTTAGCTTCAATCTG-TTCCACTGCAAC
* * *
112111029 TTCAGGGAGATAAGACTTG-TAA
251 TTCAGGGAAATAAGATTTGCTAT
* * * * * * * *
112111051 GTTC-GACCTGCTCTACTGTAACTTCAGAGAGATAAGA-TCTGTAATTTAGCTTCAATCTGTTCC
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGT-A---A-CTTCAACCTGCTCT
* * * * * *
112111114 ACTGCAACTTCAGGA-AAATAAGATT-TACTATA-TTCAGTCTGCTCCACTGCAACTTCAGGGAG
59 ACTGCAACTTCAGGAGAGATAAGATTGTAATTTACTTCAATCTGTTCCACTGCAACTTCAGGGAA
* * * * * *
112111176 ATAAGACTTGTAACTTC-GACAAGTTCTACTGCAACTTCATAGAGATAAGACTTGTAACTTCGAC
124 ATAAGATTTGTATCTTCAGTC-TGCTCCACTGCAACTTCA-AGAGATAAGACTTGTAACTTCGAC
112111240 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
187 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
112111305 TCAGGGAAATATA-ATTTGCTAT
252 TCAGGGAAATA-AGATTTGCTAT
* * * * *
112111327 CTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTATTGTAA
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAA
* * *
112111392 CTT-TGGAGAGATAAGATTTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATATG
66 CTTCAGGAGAGATAAGA-TTGTAATTTA-CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAG
*
112111456 ATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCT
129 ATTTG-TATCTTCAGTCTGCTCCACTGCAACTTCA-AGAGATAAGACTTGTAACTTCGACCTGCT
* * * *
112111521 CTACTGCAACTTCAGTGAGATAAAATCTGTAATTTAGCTTCAATCTGTTTCACTGTAACTTCAGG
192 CTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGG
112111586 GAAATAAGATTTGCTAT
257 GAAATAAGATTTGCTAT
* * * **
112111603 CTTCAATCTGCTCCTCTGCAACTTCAAGGAGATAAGACTTGTAACTTTGACCTGCTCTACTGCAA
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAA
*
112111668 CTTCA-GAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAG
66 CTTCAGGAGAGATAAGAT-TGTAATTTA-CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAG
112111732 ATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGAAGATAAGACTTGTAACTTCGACCTGCT
129 ATTTG-TATCTTCAGTCTGCTCCACTGCAACTTCAAG-AGATAAGACTTGTAACTTCGACCTGCT
*
112111797 CTACTGCAACTTCAGAGAGATAAGATCTATAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGG
192 CTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGG
* *
112111862 AAAATATGATTTGCTAT
257 GAAATAAGATTTGCTAT
* * *
112111879 CTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTACTGCAA
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAA
* * *
112111944 TTTCA-GAGAGATAAGATCTGTAATTTAGCTTCAATCTATTCCACTGCAACTTCAGGAAAATAAG
66 CTTCAGGAGAGATAAGAT-TGTAATTTA-CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAG
* *
112112008 ATTTACTATTTTCAGTCTGCTCCACTGCAA-TTCAAGGAGATAAGACTTGTAACTTCGACCTGCT
129 ATTT-GTATCTTCAGTCTGCTCCACTGCAACTTCAA-GAGATAAGACTTGTAACTTCGACCTGCT
* * *
112112072 CTACTGCAACTTCAGAAAGATAAGATCTGTAATTTAGCTTCAATCTGTTCTACTGAAACTTCAGG
192 CTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGG
* *
112112137 AAAATAAGATTTACTAT
257 GAAATAAGATTTGCTAT
* *
112112154 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAGGACTTGT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
112112196 GTTGATCTAC
Statistics
Matches: 1003, Mismatches: 109, Indels: 63
0.85 0.09 0.05
Matches are distributed among these distances:
270 3 0.00
271 58 0.06
272 36 0.04
273 7 0.01
274 3 0.00
275 222 0.22
276 670 0.67
277 4 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (273 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAA
CTTCAGGAGAGATAAGATTGTAATTTACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
TTGTATCTTCAGTCTGCTCCACTGCAACTTCAAGAGATAAGACTTGTAACTTCGACCTGCTCTAC
TGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
TAAGATTTGCTAT
Found at i:112111353 original size:320 final size:319
Alignment explanation
Indices: 112110576--112111543 Score: 1573
Period size: 320 Copynumber: 3.0 Consensus size: 319
112110566 TAAGCACAAG
*
112110576 GAGATAAGACTTGTAACTTCGACCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAG
1 GAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAG
*
112110641 CTTCAATCTGTTCCATTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTGCA
66 CTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTGCA
* *
112110706 ACTTAAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCTG
131 ACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGATCTG
* *
112110771 TAATTTAGCTTCAATCTGTTCTACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCT
196 TAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCTGCT
* * * *
112110836 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCA-A
261 CCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCGA-CTGCTCTACTGCAACTTCATA
* *
112110896 GGAGATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTA
1 -GAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
** * *
112110961 GCTTCAATCTGTTCCACTATAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTTCACTGC
65 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTGC
* *
112111026 AACTTCAGGGAGATAAGACTTGTAAGTTCGACCTGCTCTACTGTAACTTCAGAGAGATAAGATCT
130 AACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGATCT
* * * *
112111091 GTAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATATTCAGTCTGC
195 GTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCTGC
* *
112111156 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACAAGTTCTACTGCAACTTCATA
260 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGAC-TGCTCTACTGCAACTTCATA
112111217 GAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAG
1 GAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAG
* *
112111282 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATATA-ATTTGCTATCTTCAGTCTACTCCACTGC
66 CTTCAATCTGTTCCACTGCAACTTCAGGAAAATA-AGATTTACTATCTTCAGTCTACTCCACTGC
* ** *
112111346 AACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTATTGTAACTTTGGAGAGATAAGATTT
130 AACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGATCT
*
112111411 GTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATATGATTTGCTATCTTCAGTCTGC
195 GTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCTGC
112111476 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGT-
260 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGA-CTGCTCTACTGCAACTTCA-TA
112111537 GAGATAA
1 GAGATAA
112111544 AATCTGTAAT
Statistics
Matches: 597, Mismatches: 45, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
319 1 0.00
320 322 0.54
321 274 0.46
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (319 bp):
GAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAG
CTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTGCA
ACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGATCTG
TAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCTGCT
CCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACTGCTCTACTGCAACTTCATA
Found at i:112111516 original size:458 final size:457
Alignment explanation
Indices: 112110575--112111821 Score: 1747
Period size: 458 Copynumber: 2.7 Consensus size: 457
112110565 GTAAGCACAA
*
112110575 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTA
1 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
* *
112110640 GCTTCAATCTGTTCCATTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTGC
66 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTGC
* *
112110705 AACTTAAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
131 AACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
* * * * *
112110770 GTAATTTAGCTTCAATCTGTTCTACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGC
196 GTAA--TAGCTTCAACCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGCTATCTTCAATCTGC
* *
112110835 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAGGAG
259 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAAGGAG
*
112110900 ATAAGACTTATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTAGCTT
324 ATAAGACTTATAACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTAGCTT
* *
112110965 CAATCTGTTCCACTATAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTTCACTGCAACT
389 CAATCTGTTCCACTACAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTGCAACT
112111030 TCAG
454 TCAG
* *
112111034 GGAGATAAGACTTGTAAGTTCGACCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTTA
1 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
*
112111099 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATATTCAGTCTGCTCCACTGC
66 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTGC
** * *
112111164 AACTTCAGGGAGATAAGACTTGTAACTTCGACAAGTTCTACTGCAACTTCATAGAGATAAGA-CT
131 AACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATC-
* *
112111228 TGT-A-A-CTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TAATTTAGCTTCAAT
195 TGTAATAGCTTCAACCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGCT-A--T--CTTCAAT
* *
112111289 CTGTTCCACTGCAACTTCAGGGAAATATA-ATTTGCTATCTTCAGTCTACTCCACTGCAACTTCA
255 CTGCTCCACTGCAACTTCAGGGAAATA-AGATTTGCTATCTTCAATCTACTCCACTGCAACTTCA
* * * * ** * *
112111353 GGGAGATAAGACTTGTAACTTCGACCTACTCTATTGTAACTTTGGAGAGATAAGATTTGTAATTT
319 AGGAGATAAGACTTATAACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTATAATTT
* * * * *
112111418 AGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATATGATTTGCTATCTTCAGTCTGCTCCACTG
384 AGCTTCAATCTGTTCCACTACAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTG
112111483 CAACTTCAG
449 CAACTTCAG
* *
112111492 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGTGAGATAAAATCTGTAATTTA
1 GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
* * * * * *
112111557 GCTTCAATCTGTTTCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCTCTGC
66 GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTGC
* *
112111622 AACTTCAAGGAGATAAGACTTGTAACTTTGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
131 AACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
* * * * * * *
112111687 GTAATTTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGC
196 GTAA--TAGCTTCAACCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGCTATCTTCAATCTGC
* * * * * * *
112111752 TCCACTGCAACTTCA-AGAAGATAAGACTTG-TAACTTCGACCTGCTCTACTGCAACTTC-AGAG
259 TCCACTGCAACTTCAGGGAA-ATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAAG-G
112111814 AGATAAGA
322 AGATAAGA
112111822 TCTATAATTT
Statistics
Matches: 696, Mismatches: 75, Indels: 35
0.86 0.09 0.04
Matches are distributed among these distances:
453 1 0.00
454 35 0.05
455 1 0.00
456 1 0.00
457 1 0.00
458 403 0.58
459 217 0.31
461 1 0.00
462 1 0.00
463 34 0.05
464 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (457 bp):
GGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTA
GCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTGC
AACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
GTAATAGCTTCAACCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGCTATCTTCAATCTGCTC
CACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAAGGAGAT
AAGACTTATAACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTAGCTTCA
ATCTGTTCCACTACAACTTCAGGAAAATAAGATTTACTATCTTCAGTCTGCTCCACTGCAACTTC
AG
Found at i:112111667 original size:320 final size:314
Alignment explanation
Indices: 112110576--112111683 Score: 1338
Period size: 320 Copynumber: 3.4 Consensus size: 314
112110566 TAAGCACAAG
* *
112110576 GAGATAAGACTTGTA-ACTTCGACCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTA
1 GAGATAAGAC-TGTATACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGT-A--T-
* * * *
112110640 GCTTCAATCTGTTCCATTGCAACTTC-AGGAAAATAAGATTTACTATCTTCAGTCTACTCCACTG
61 -CTTCAATCTGTTCCACTGCAACTTCAAGG-AAATAAGATTT-GTATCTTCAGTCTGCTCTACTG
* *
112110704 CAACTTAAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATC
123 CAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGATC
* *
112110769 TGTAATTTAGCTTCAATCTGTTCTACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTG
188 TGTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCTG
* * * * *
112110834 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAG-
253 CTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCGACCTGCTCTACTGCAACTTC-AGT
*
112110897 GAGATAAGACT-TATAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTA
1 GAGATAAGACTGTAT-ACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGA--T-T--TGTA
* ** *
112110961 GCTTCAATCTGTTCCACTATAACTTC-AGGAAAATAAGATTTACTATCTTCAGTCTGCT-TCACT
60 TCTTCAATCTGTTCCACTGCAACTTCAAGG-AAATAAGATTT-GTATCTTCAGTCTGCTCT-ACT
* *
112111024 GCAACTTCAGGGAGATAAGACTTGTAAGTTCGACCTGCTCTACTGTAACTTCAGAGAGATAAGAT
122 GCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGAT
* * * *
112111089 CTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTACTATATTCAGTCT
187 CTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCT
** *
112111154 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACAAGTTCTACTGCAACTTCA-T
252 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGT
*
112111216 AGAGATAAGACTTGTA-ACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTT
1 -GAGATAAGAC-TGTATACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGT-A--T
* * *
112111280 AGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATATA-ATTTGCTATCTTCAGTCTACTCCACT
61 --CTTCAATCTGTTCCACTGCAACTTCAAGGAAATA-AGATTTG-TATCTTCAGTCTGCTCTACT
* **
112111344 GCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTATTGTAACTTTGGAGAGATAAGAT
122 GCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGAT
* *
112111409 TTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATATGATTTGCTATCTTCAGTCT
187 CTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCT
112111474 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGT
252 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGT
* * * * * * *
112111537 GAGATAAAATCTGTAATTTAGCTTCAATCTG-TTTCACTGTAACTTCAGGGAAATAAGATTTGCT
1 GAGATAAGA-CTGT-A--TA-CTTCGACCTGCTCT-ACTGCAACTTCAGAGAGATAAGATTTG-T
* * * * * * *
112111601 ATCTTCAATCTGCTCCTCTGCAACTTCAAGGAGATAAGACTTGTAACTT-TGACCTGCTCTACTG
59 ATCTTCAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTTGTATCTTCAG-TCTGCTCTACTG
*
112111665 CAACTTCAGAGAGATAAGA
123 CAACTTCAGGGAGATAAGA
112111684 TCTGTAATTT
Statistics
Matches: 686, Mismatches: 69, Indels: 65
0.84 0.08 0.08
Matches are distributed among these distances:
315 2 0.00
316 1 0.00
318 1 0.00
319 4 0.01
320 340 0.50
321 295 0.43
322 2 0.00
323 2 0.00
324 3 0.00
325 33 0.05
326 3 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (314 bp):
GAGATAAGACTGTATACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTATCTTCA
ATCTGTTCCACTGCAACTTCAAGGAAATAAGATTTGTATCTTCAGTCTGCTCTACTGCAACTTCA
GGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGTAACTTCAGAGAGATAAGATCTGTAATTT
AGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTG
CAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGT
Found at i:112111860 original size:138 final size:138
Alignment explanation
Indices: 112111146--112112195 Score: 1606
Period size: 138 Copynumber: 7.6 Consensus size: 138
112111136 ATTTACTATA
* * * * * * * * *
112111146 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTC-GACAAGTTCTACTGCA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTC-TGCTCCACTGCA
112111209 ACTTCATA-GAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
65 ACTTCA-AGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
112111273 GTAATTTAGC
129 GTAATTTAGC
*
112111283 TTCAATCTGTTCCACTGCAACTTCAGGGAAATATA-ATTTGCTATCTTCAGTCTACTCCACTGCA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATA-AGATTTGCTATCTTCAGTCTGCTCCACTGCA
* * * * ** *
112111347 ACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTATTGTAACTTTGGAGAGATAAGATTTG
65 ACTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG
112111412 TAATTTAGC
130 TAATTTAGC
* *
112111421 TTCAATCTGTTCCACTGCAACTTTAGGGAAATATGATTTGCTATCTTCAGTCTGCTCCACTGCAA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
* * *
112111486 CTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGTGAGATAAAATCTGT
66 CTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
112111551 AATTTAGC
131 AATTTAGC
* * * *
112111559 TTCAATCTGTTTCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCTCTGCAA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
*
112111624 CTTCAAGGAGATAAGACTTGTAACTTTGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
66 CTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
112111689 AATTTAGC
131 AATTTAGC
*
112111697 TTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
* *
112111762 CTTCAAGAAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTAT
66 CTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
112111827 AATTTAGC
131 AATTTAGC
* * *
112111835 TTCAATCTGTTCCACTGCAACTTCAGGAAAATATGATTTGCTATCTTCAGTCTACTCCACTGCAA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
* * *
112111900 CTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTACTGCAATTTCAGAGAGATAAGATCTGT
66 CTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
112111965 AATTTAGC
131 AATTTAGC
* * * *
112111973 TTCAATCTATTCCACTGCAACTTCAGGAAAATAAGATTTACTATTTTCAGTCTGCTCCACTGCAA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
*
112112038 -TTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAAAGATAAGATCTGT
66 CTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
112112102 AATTTAGC
131 AATTTAGC
* * * * *
112112110 TTCAATCTGTTCTACTGAAACTTCAGGAAAATAAGATTTACTATCTTTAGTCTGCTCCACTGCAA
1 TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
* *
112112175 CTTCAGGGAGATAGGACTTGT
66 CTTCAAGGAGATAAGACTTGT
112112196 GTTGATCTAC
Statistics
Matches: 838, Mismatches: 69, Indels: 11
0.91 0.08 0.01
Matches are distributed among these distances:
137 162 0.19
138 674 0.80
139 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (138 bp):
TTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
CTTCAAGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
AATTTAGC
Found at i:112115559 original size:41 final size:40
Alignment explanation
Indices: 112115514--112115599 Score: 91
Period size: 41 Copynumber: 2.1 Consensus size: 40
112115504 CAAATGCATT
* *
112115514 TAAAACAAATATTAGAACAAGAAACAAATAAAAAATGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * * *
112115555 TAAAATAATTCTTAAAACAATACACAAATTAAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
112115595 TAAAA
1 TAAAA
112115600 AGTGATTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
40 8 0.22
41 29 0.78
ACGTcount: A:0.65, C:0.09, G:0.03, T:0.22
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:112115650 original size:28 final size:27
Alignment explanation
Indices: 112115582--112115650 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
112115572 CAATACACAA
* * *
112115582 ATTAAAAATATAATAAAAAGTGATTAT
1 ATTAAAAATAAAATAAAAAGTAAATAT
* *
112115609 ATTAAAATTGAAAATAAAATGTAAATAT
1 ATTAAAAAT-AAAATAAAAAGTAAATAT
112115637 GATTAAAAATAAAA
1 -ATTAAAAATAAAA
112115651 AATATATATT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 8 0.24
28 18 0.53
29 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (27 bp):
ATTAAAAATAAAATAAAAAGTAAATAT
Found at i:112118669 original size:7 final size:7
Alignment explanation
Indices: 112118659--112118690 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
112118649 TTTTTTTTAT
112118659 ATTTTCA
1 ATTTTCA
112118666 ATTTTCA
1 ATTTTCA
112118673 ATTTTCA
1 ATTTTCA
112118680 ATTTTC-
1 ATTTTCA
112118686 ATTTT
1 ATTTT
112118691 AACATTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTCA
Found at i:112124523 original size:23 final size:23
Alignment explanation
Indices: 112124493--112124539 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
112124483 TAAGTGATCA
112124493 TTTCATAACAAATTAAAGTTTAG
1 TTTCATAACAAATTAAAGTTTAG
112124516 TTTCATAACAAATTAAAGTTTAG
1 TTTCATAACAAATTAAAGTTTAG
112124539 T
1 T
112124540 GGCTAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (23 bp):
TTTCATAACAAATTAAAGTTTAG
Found at i:112124750 original size:17 final size:17
Alignment explanation
Indices: 112124724--112124816 Score: 52
Period size: 17 Copynumber: 5.6 Consensus size: 17
112124714 TTCCTCCTTA
112124724 AAAAATTATAATTTTTTT
1 AAAAA-TATAATTTTTTT
112124742 AAAAATAT-A---TTTT
1 AAAAATATAATTTTTTT
* **
112124755 GAATTTATAATTTTTTT
1 AAAAATATAATTTTTTT
* *
112124772 -AAATTATAGTTTTTTTTT
1 AAAAATATA--ATTTTTTT
** *
112124790 AAATTTATAATTTTTTA
1 AAAAATATAATTTTTTT
112124807 AAAAATATAA
1 AAAAATATAA
112124817 ATATTAGAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 8 0.14
17 21 0.36
18 12 0.21
19 7 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
AAAAATATAATTTTTTT
Found at i:112124789 original size:19 final size:19
Alignment explanation
Indices: 112124751--112124805 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 19
112124741 TAAAAATATA
*
112124751 TTTTGAATTTATAA--TTT
1 TTTTAAATTTATAATTTTT
*
112124768 TTTTAAA-TTATAGTTTTT
1 TTTTAAATTTATAATTTTT
112124786 TTTTAAATTTATAATTTTT
1 TTTTAAATTTATAATTTTT
112124805 T
1 T
112124806 AAAAAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 5 0.16
17 6 0.19
18 10 0.31
19 11 0.34
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TTTTAAATTTATAATTTTT
Found at i:112124806 original size:16 final size:16
Alignment explanation
Indices: 112124751--112124808 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 16
112124741 TAAAAATATA
*
112124751 TTTTGAATTTATAATTT
1 TTTTAAATTTATAA-TT
**
112124768 TTTTAAATTATAGTTTTT
1 TTTTAAATT-TA-TAATT
112124786 TTTTAAATTTATAATT
1 TTTTAAATTTATAATT
112124802 TTTTAAA
1 TTTTAAA
112124809 AAATATAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 10 0.29
17 10 0.29
18 13 0.38
19 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
TTTTAAATTTATAATT
Found at i:112127095 original size:3 final size:3
Alignment explanation
Indices: 112127087--112127153 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
112127077 TCTTTTTGCT
112127087 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
112127135 TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC T
112127154 GTTGAAAATG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:112127187 original size:45 final size:45
Alignment explanation
Indices: 112127138--112127387 Score: 127
Period size: 45 Copynumber: 5.4 Consensus size: 45
112127128 CTTCTTCTTC
112127138 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
1 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
* * *
112127183 TTCTTCTTCATCTTCTTCCTCTGTTGACAATGATGATTGCAATGGTG---A
1 TTCTTC-T--TCTTC-T--TCTGTTGAAAATGATGATTGCATTTGTGAATA
* * * ** * * *
112127231 GTCTTCTTCTTCTTC--TT-CAAGT-ATTGATCCCACTGGTGAATG
1 TTCTTCTTCTTCTTCTGTTGAAAATGA-TGATTGCATTTGTGAATA
* ** * *** *
112127273 TTCTTCATCTTCTTCTGTTGAATTTGATGATTGTAACAGTGAGTCTTCTTCTTC
1 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTG---C----A-T-TTGTGAATA
112127327 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
1 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
*
112127372 TTCTTCTTCATCTTCT
1 TTCTTCTTCTTCTTCT
112127388 TCCCCTATTG
Statistics
Matches: 148, Mismatches: 34, Indels: 46
0.65 0.15 0.20
Matches are distributed among these distances:
38 1 0.01
39 13 0.09
40 2 0.01
42 15 0.10
44 3 0.02
45 36 0.24
46 3 0.02
47 2 0.01
48 12 0.08
49 1 0.01
51 26 0.18
52 1 0.01
54 33 0.22
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (45 bp):
TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
Found at i:112127187 original size:51 final size:50
Alignment explanation
Indices: 112127132--112127434 Score: 188
Period size: 51 Copynumber: 6.2 Consensus size: 50
112127122 CTTCTTCTTC
* *
112127132 TTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
1 TTCTTCTTCTTCTTCTTC-TCTGTTGAAAATGATGATTGCAATGGTGAATA
* *
112127183 TTCTTCTTCATCTTCTTCCTCTGTTGACAATGATGATTGCAATGGTG---A
1 TTCTTCTTCTTCTTCTT-CTCTGTTGAAAATGATGATTGCAATGGTGAATA
* ** ** * *
112127231 GTCTTCTTCTTCTTCTTC-AAG-T----AT--TGATCCCACTGGTGAATG
1 TTCTTCTTCTTCTTCTTCTCTGTTGAAAATGATGATTGCAATGGTGAATA
* ** * ** * *
112127273 TTCTTC---ATCTTC-T-TCTGTTGAATTTGATGATTGTAACAGTGAGTCTTC
1 TTCTTCTTCTTCTTCTTCTCTGTTGAAAATGATGATTGCAATGGTGA---ATA
* *
112127321 TTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATA
1 TTCTTCTTCTTCTTCTTC-TCTGTTGAAAATGATGATTGCAATGGTGAATA
* * * * * *
112127372 TTCTTCTTCATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTC
1 TTCTTCTTCTTCTTCTT-CTCTGTTGAAAATGATGATTGCAATGGTGAATA
112127423 TTCTTCTTCTTC
1 TTCTTCTTCTTC
112127435 AAGTGTTGAT
Statistics
Matches: 187, Mismatches: 43, Indels: 44
0.68 0.16 0.16
Matches are distributed among these distances:
38 2 0.01
39 17 0.09
41 2 0.01
42 5 0.03
43 1 0.01
45 10 0.05
46 1 0.01
47 1 0.01
48 23 0.12
51 99 0.53
52 3 0.02
54 23 0.12
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (50 bp):
TTCTTCTTCTTCTTCTTCTCTGTTGAAAATGATGATTGCAATGGTGAATA
Found at i:112127322 original size:3 final size:3
Alignment explanation
Indices: 112127316--112127342 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
112127306 TAACAGTGAG
112127316 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
112127343 GTTGAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:112127322 original size:186 final size:184
Alignment explanation
Indices: 112127129--112127525 Score: 679
Period size: 189 Copynumber: 2.1 Consensus size: 184
112127119 CTTCTTCTTC
112127129 TTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTCAT
1 TTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTCAT
* *
112127194 CTTCTTCCTCTGTTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCTTCAAGTATTGAT
66 CTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAG---TCTTCTTCTTCTTCAAGTATTGAT
* *
112127259 CCCACTGGTGAATGTTCTTCATCTTCTTCTGTTGAATTTGATGATTGTAACAGTGAG
128 CCCACTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGATGATTGTAACAATGAG
112127316 TCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
1 --TTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
*
112127381 ATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCAAGTGTTGATC
64 ATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCAAGTATTGATC
* *
112127446 CCATTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGGTGATTGTAACAATGAG
129 CCACTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGATGATTGTAACAATGAG
112127502 -TCTTCTTCTTCTTCTTCTTCTTCT
1 TTCTTCTTCTTCTTCTTCTTCTTCT
112127526 TCTAAAAATG
Statistics
Matches: 201, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
183 24 0.12
186 76 0.38
189 101 0.50
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (184 bp):
TTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTCAT
CTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCAAGTATTGATCCC
ACTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGATGATTGTAACAATGAG
Found at i:112127322 original size:189 final size:186
Alignment explanation
Indices: 112127127--112127528 Score: 714
Period size: 186 Copynumber: 2.1 Consensus size: 186
112127117 TTCTTCTTCT
112127127 TCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
1 TCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
* *
112127192 ATCTTCTTCCTCTGTTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCTTCAAGTATTG
66 ATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAG---TCTTCTTCTTCTTCAAGTATTG
* *
112127257 ATCCCACTGGTGAATGTTCTTCATCTTCTTCTGTTGAATTTGATGATTGTAACAGTGAG
128 ATCCCACTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGATGATTGTAACAATGAG
112127316 TCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
1 TCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
*
112127381 ATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCAAGTGTTGATC
66 ATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCAAGTATTGATC
* *
112127446 CCATTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGGTGATTGTAACAATGAG
131 CCACTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGATGATTGTAACAATGAG
112127502 TCTTCTTCTTCTTCTTCTTCTTCTTCT
1 TCTTCTTCTTCTTCTTCTTCTTCTTCT
112127529 AAAAATGATC
Statistics
Matches: 206, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
186 103 0.50
189 103 0.50
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (186 bp):
TCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
ATCTTCTTCCCCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTCTTCAAGTATTGATC
CCACTGGTGAATGTTCCTCATCTTCTTCTGTTGAATTTGATGATTGTAACAATGAG
Found at i:112127355 original size:54 final size:54
Alignment explanation
Indices: 112127273--112127434 Score: 177
Period size: 54 Copynumber: 3.1 Consensus size: 54
112127263 CTGGTGAATG
* ** * *
112127273 TTCTTCATCTTCTTCTGTTGAATTTGATGATTGTAACAGTGAGTCTTCTTCTTC
1 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCAATAGTGAGTCTTCTTCTTC
* * * *
112127327 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCATTTGTGAATATTCTTCTTC
1 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCAATAGTGAGTCTTCTTCTTC
* * * * *
112127381 ATCTTCTTC--C-CCTATTGACAATGATGATTGCAATGGTGAGTCTTCTTCTTC
1 TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCAATAGTGAGTCTTCTTCTTC
112127432 TTC
1 TTC
112127435 AAGTGTTGAT
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
51 36 0.40
52 1 0.01
54 53 0.59
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (54 bp):
TTCTTCTTCTTCTTCTGTTGAAAATGATGATTGCAATAGTGAGTCTTCTTCTTC
Found at i:112127510 original size:3 final size:3
Alignment explanation
Indices: 112127502--112127528 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
112127492 TAACAATGAG
112127502 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
112127529 AAAAATGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:112127588 original size:15 final size:14
Alignment explanation
Indices: 112127570--112127632 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 14
112127560 CATTGTCATT
112127570 GTCATCGTCACCGTC
1 GTCATCGTCA-CGTC
*
112127585 GTCACCGT--CGTC
1 GTCATCGTCACGTC
*
112127597 GTCGTCGTCATCGTC
1 GTCATCGTCA-CGTC
112127612 GTCATCGT--CGTC
1 GTCATCGTCACGTC
*
112127624 ATCATCGTC
1 GTCATCGTC
112127633 GTCATCGTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
12 21 0.54
15 18 0.46
ACGTcount: A:0.11, C:0.37, G:0.22, T:0.30
Consensus pattern (14 bp):
GTCATCGTCACGTC
Found at i:112127596 original size:3 final size:3
Alignment explanation
Indices: 112127590--112127641 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
112127580 CCGTCGTCAC
* * * * *
112127590 CGT CGT CGT CGT CGT CAT CGT CGT CAT CGT CGT CAT CAT CGT CGT CAT
1 CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT
112127638 CGT C
1 CGT C
112127642 CTCCTCCTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.10, C:0.35, G:0.23, T:0.33
Consensus pattern (3 bp):
CGT
Found at i:112127596 original size:12 final size:12
Alignment explanation
Indices: 112127581--112127641 Score: 68
Period size: 12 Copynumber: 5.1 Consensus size: 12
112127571 TCATCGTCAC
*
112127581 CGTCGTCACCGT
1 CGTCGTCATCGT
*
112127593 CGTCGTCGTCGT
1 CGTCGTCATCGT
* * *
112127605 CATCGTCGTCAT
1 CGTCGTCATCGT
*
112127617 CGTCGTCATCAT
1 CGTCGTCATCGT
112127629 CGTCGTCATCGT
1 CGTCGTCATCGT
112127641 C
1 C
112127642 CTCCTCCTCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.10, C:0.36, G:0.23, T:0.31
Consensus pattern (12 bp):
CGTCGTCATCGT
Found at i:112127602 original size:18 final size:18
Alignment explanation
Indices: 112127581--112127641 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
112127571 TCATCGTCAC
*
112127581 CGTCGTCACCGTCGTCGT
1 CGTCGTCATCGTCGTCGT
*
112127599 CGTCGTCATCGTCGTCAT
1 CGTCGTCATCGTCGTCGT
*
112127617 CGTCGTCATCATCGTCGT
1 CGTCGTCATCGTCGTCGT
*
112127635 CATCGTC
1 CGTCGTC
112127642 CTCCTCCTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.10, C:0.36, G:0.23, T:0.31
Consensus pattern (18 bp):
CGTCGTCATCGTCGTCGT
Found at i:112127641 original size:9 final size:9
Alignment explanation
Indices: 112127574--112127632 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
112127564 GTCATTGTCA
*
112127574 TCGTCACCG
1 TCGTCATCG
*
112127583 TCGTCACCG
1 TCGTCATCG
*
112127592 TCGTCGTCG
1 TCGTCATCG
112127601 TCGTCATCG
1 TCGTCATCG
112127610 TCGTCATCG
1 TCGTCATCG
*
112127619 TCGTCATCA
1 TCGTCATCG
112127628 TCGTC
1 TCGTC
112127633 GTCATCGTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.10, C:0.37, G:0.22, T:0.31
Consensus pattern (9 bp):
TCGTCATCG
Found at i:112127682 original size:3 final size:3
Alignment explanation
Indices: 112127676--112127737 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
112127666 CTCCTCCTCC
112127676 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
112127724 TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TC
112127738 TTCTTCTTCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:112131780 original size:20 final size:21
Alignment explanation
Indices: 112131752--112131790 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
112131742 ATCCAACATG
112131752 GCAAGTTAACTGGCCACATCA
1 GCAAGTTAACTGGCCACATCA
* *
112131773 GCAA-TTAATTTGCCACAT
1 GCAAGTTAACTGGCCACAT
112131791 TAGTGGTCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (21 bp):
GCAAGTTAACTGGCCACATCA
Found at i:112132674 original size:21 final size:21
Alignment explanation
Indices: 112132634--112132674 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
112132624 ATGAAAGAAG
*
112132634 AAAATATATAATATATATTTA
1 AAAATATATAATAAATATTTA
112132655 AAAATA-ATAATAAATGATTT
1 AAAATATATAATAAAT-ATTT
112132675 TCTATGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AAAATATATAATAAATATTTA
Found at i:112133002 original size:18 final size:20
Alignment explanation
Indices: 112132967--112133003 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
112132957 ATATTATTTG
*
112132967 AAAATATATATAATACATCA
1 AAAATATATATAAAACATCA
112132987 AAAATAT-TA-AAAACATC
1 AAAATATATATAAAACATC
112133004 TAAATAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.44
19 2 0.12
20 7 0.44
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAATATATATAAAACATCA
Found at i:112133135 original size:30 final size:30
Alignment explanation
Indices: 112133091--112133151 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
112133081 ACTTAACAAG
112133091 TAAATGCCTCTAAAATAATAACAAAATTAA
1 TAAATGCCTCTAAAATAATAACAAAATTAA
* * * *
112133121 TAAATGTCTTTAAAATGATAACAAATTTAA
1 TAAATGCCTCTAAAATAATAACAAAATTAA
112133151 T
1 T
112133152 TATCAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.33
Consensus pattern (30 bp):
TAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:112133275 original size:5 final size:6
Alignment explanation
Indices: 112133249--112133282 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
112133239 AAACAATAAG
* *
112133249 AAAATA ATATTA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
112133283 CATAATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:112159068 original size:41 final size:41
Alignment explanation
Indices: 112159023--112159140 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
112159013 TGAAAGATAA
112159023 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
112159064 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
112159094 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
112159135 ATGTAG
1 ATGTAG
112159141 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:112159079 original size:71 final size:71
Alignment explanation
Indices: 112158991--112159154 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
112158981 GAGATGTATC
112158991 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
112159056 AGGACA
66 AGGACA
112159062 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
112159127 AGGACA
66 AGGACA
112159133 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
112159155 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:112160805 original size:46 final size:45
Alignment explanation
Indices: 112160745--112161009 Score: 328
Period size: 46 Copynumber: 6.0 Consensus size: 45
112160735 TTTGACATGA
* * * * * *
112160745 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** **
112160791 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
112160837 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
112160883 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
112160929 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
*
112160967 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAG
112161010 AGAGCACACT
Statistics
Matches: 194, Mismatches: 16, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
38 34 0.18
40 3 0.02
44 3 0.02
45 8 0.04
46 143 0.74
47 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:112160974 original size:38 final size:38
Alignment explanation
Indices: 112160923--112160998 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
112160913 ACATTTTATA
112160923 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
112160961 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
112160999 ATTTATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:112163158 original size:11 final size:11
Alignment explanation
Indices: 112163142--112163193 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
112163132 TATACTAAAT
112163142 AAATAATAATA
1 AAATAATAATA
*
112163153 AAATAAT-ATT
1 AAATAATAATA
* *
112163163 AAATATCTCATA
1 AAATA-ATAATA
*
112163175 AAATATTAATA
1 AAATAATAATA
112163186 AAATAATA
1 AAATAATA
112163194 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:112171969 original size:50 final size:51
Alignment explanation
Indices: 112171892--112172020 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
112171882 GACCATGGCA
* *
112171892 ACAAGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAAAAACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAAACAAATG
**
112171943 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAAACAAATG
* *
112171993 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
112172021 CAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 46 0.65
51 25 0.35
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAAACAAATG
Found at i:112172034 original size:31 final size:31
Alignment explanation
Indices: 112171996--112172138 Score: 216
Period size: 31 Copynumber: 4.6 Consensus size: 31
112171986 ACAAATGACA
* *
112171996 AGTGAAAAGTGGTAGCTTCGGCTACCAGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
112172027 AGTGAAAAGTGGTAGCTTCTA-CTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-AGCTACCTGATC
*
112172058 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
112172089 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
112172120 AGTGAATAGTGGTAGCTTC
1 AGTGAAAAGTGGTAGCTTC
112172139 GAATACAAGT
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
30 1 0.01
31 102 0.99
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:112172350 original size:42 final size:43
Alignment explanation
Indices: 112172256--112172418 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 43
112172246 TATGTGATTC
*
112172256 GTGTAAGACC-TAGCTGGGCTATGGCATCGATATGTGATATGTAATTAC
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATG-AA-TAT
*
112172304 GTGTAAGACCATAGCTGGGCTATGGTATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAATAT
* *
112172346 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAATAT
* **
112172388 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
112172419 GAAAACGAAG
Statistics
Matches: 104, Mismatches: 8, Indels: 11
0.85 0.07 0.09
Matches are distributed among these distances:
41 1 0.01
42 65 0.62
43 3 0.03
44 5 0.05
45 1 0.01
47 1 0.01
48 10 0.10
49 18 0.17
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAATAT
Found at i:112179099 original size:39 final size:40
Alignment explanation
Indices: 112179056--112179156 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 40
112179046 ACTAGCTCGA
* * *
112179056 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGT
1 AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAGCACAT
* *
112179095 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAGCACAT
* *
112179134 AGCCTGC-GGACCCTAAGTCCGGA
1 AGCCTGCGGGACCTTAAGCCCGGA
112179157 TATACATCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 3 0.05
39 52 0.95
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAGCACAT
Found at i:112179157 original size:39 final size:39
Alignment explanation
Indices: 112179074--112179160 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
112179064 GGACTTTAGC
* * * *
112179074 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
112179113 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
112179152 CCGGATATA
1 CCGGATATA
112179161 CATCACTGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:112192915 original size:34 final size:34
Alignment explanation
Indices: 112192849--112192916 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 34
112192839 GAAGGTCAGC
*
112192849 GAGTTGCTTTGGAACTCACTAAATTCATTTGAAA
1 GAGTTGCTTTGGAACTAACTAAATTCATTTGAAA
*
112192883 GAGTTAGCTTTGGAACTAACTAAGTTCA-TTGAAA
1 GAGTT-GCTTTGGAACTAACTAAATTCATTTGAAA
112192917 CTTAACTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 11 0.35
35 20 0.65
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (34 bp):
GAGTTGCTTTGGAACTAACTAAATTCATTTGAAA
Found at i:112193878 original size:2 final size:2
Alignment explanation
Indices: 112193859--112193898 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
112193849 TGAGTGGATA
*
112193859 AT AT A- AT AT -T AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112193899 TAAGATTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:112194784 original size:14 final size:14
Alignment explanation
Indices: 112194765--112194792 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
112194755 ATTCAAAAAC
112194765 CTATAAATGTTAAA
1 CTATAAATGTTAAA
112194779 CTATAAATGTTAAA
1 CTATAAATGTTAAA
112194793 AGGTTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
CTATAAATGTTAAA
Found at i:112195054 original size:17 final size:17
Alignment explanation
Indices: 112195032--112195067 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
112195022 AAGTTAAAAT
112195032 ATAATTT-TATTATTTTA
1 ATAATTTATATT-TTTTA
112195049 ATAATTTATATTTTTTA
1 ATAATTTATATTTTTTA
112195066 AT
1 AT
112195068 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATAATTTATATTTTTTA
Found at i:112197094 original size:17 final size:17
Alignment explanation
Indices: 112197072--112197105 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
112197062 TTAATTTAAC
112197072 TTCTAATACAAAAATTT
1 TTCTAATACAAAAATTT
112197089 TTCTAATACAAAAATTT
1 TTCTAATACAAAAATTT
112197106 CTCAAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (17 bp):
TTCTAATACAAAAATTT
Found at i:112197113 original size:17 final size:17
Alignment explanation
Indices: 112197076--112197114 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
112197066 TTTAACTTCT
* *
112197076 AATACAAAAATTTTTCT
1 AATACAAAAATTTCTCA
112197093 AATACAAAAATTTCTCA
1 AATACAAAAATTTCTCA
112197110 AATAC
1 AATAC
112197115 TTTTACCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.33
Consensus pattern (17 bp):
AATACAAAAATTTCTCA
Found at i:112201669 original size:18 final size:19
Alignment explanation
Indices: 112201637--112201672 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
112201627 ATAATTTTTT
112201637 AAATTCAAAATATTTATAG
1 AAATTCAAAATATTTATAG
*
112201656 AAATTCTAAA-ATTTATA
1 AAATTCAAAATATTTATA
112201673 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.39
Consensus pattern (19 bp):
AAATTCAAAATATTTATAG
Found at i:112202061 original size:21 final size:21
Alignment explanation
Indices: 112202037--112202076 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
112202027 ACCTTTTCTA
* *
112202037 AAGTTTAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
112202058 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
112202077 AGTTGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:112210946 original size:20 final size:20
Alignment explanation
Indices: 112210921--112210958 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
112210911 GCCGTGGCTG
112210921 TTTTGCCTTTTTTA-TTTTAT
1 TTTTG-CTTTTTTAGTTTTAT
112210941 TTTTGCTTTTTTAGTTTT
1 TTTTGCTTTTTTAGTTTT
112210959 TTTATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.76
Consensus pattern (20 bp):
TTTTGCTTTTTTAGTTTTAT
Found at i:112211938 original size:5 final size:5
Alignment explanation
Indices: 112211928--112211955 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
112211918 AACTAACATA
112211928 TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TAT
112211956 AAAGTTAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:112215408 original size:46 final size:46
Alignment explanation
Indices: 112215358--112215533 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
112215348 TGGTTGAGCA
*
112215358 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
112215404 TCCGAACTCGTTGAGTTGAGTCCGAATTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
112215451 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
112215497 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
112215534 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:112215514 original size:93 final size:93
Alignment explanation
Indices: 112215355--112215526 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
112215345 GGATGGTTGA
* * *
112215355 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
112215420 TGAGTCCGAATTCGTGAGATGTAACTAG
66 TGAGTCCGAATTCGTGAGATGTAACTAG
* *
112215448 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
*
112215513 TGAGTCCGAGTTCG
66 TGAGTCCGAATTCG
112215527 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAATTCGTGAGATGTAACTAG
Done.