Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 409 of 427
Found at i:118763509 original size:9 final size:8
Alignment explanation
Indices: 118763484--118763508 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
118763474 CTAGTTGTTG
118763484 ATAAAAAA
1 ATAAAAAA
118763492 ATAAAAAA
1 ATAAAAAA
118763500 ATAAAAAA
1 ATAAAAAA
118763508 A
1 A
118763509 AAAGGAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAAAA
Found at i:118765978 original size:22 final size:24
Alignment explanation
Indices: 118765943--118765996 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
118765933 TTAATTTTTA
*
118765943 AAAAAAGTTAAAATAATATAAAA-T
1 AAAAAA-TTAAAATAATATAAAACG
* *
118765967 AAAAAATT-AAATTATTTAAAACG
1 AAAAAATTAAAATAATATAAAACG
118765990 AAAAAAT
1 AAAAAAT
118765997 ATATGACTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 11 0.42
23 9 0.35
24 6 0.23
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (24 bp):
AAAAAATTAAAATAATATAAAACG
Found at i:118767684 original size:31 final size:31
Alignment explanation
Indices: 118767649--118767714 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
118767639 CATGTACAAT
*
118767649 AATTGAAGCACTTTCTTTTGTGATTGCATGA
1 AATTGAAGCACTTTCTTCTGTGATTGCATGA
118767680 AATTGAAGCACTTTCTTCTGTGATTGCATGA
1 AATTGAAGCACTTTCTTCTGTGATTGCATGA
118767711 AATT
1 AATT
118767715 TGACTCTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (31 bp):
AATTGAAGCACTTTCTTCTGTGATTGCATGA
Found at i:118784460 original size:12 final size:13
Alignment explanation
Indices: 118784427--118784461 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
118784417 GAGTTGATAT
118784427 ATTTATTTAAATA
1 ATTTATTTAAATA
*
118784440 ATATATTTAAA-A
1 ATTTATTTAAATA
118784452 ATTTATTTAA
1 ATTTATTTAA
118784462 TTTATTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTTATTTAAATA
Found at i:118793943 original size:22 final size:22
Alignment explanation
Indices: 118793918--118793969 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
118793908 AGCTAAAAAC
118793918 AAGACGATAAACTAGTTTCGGG
1 AAGACGATAAACTAGTTTCGGG
118793940 AAGACGATAAACTAGTTTCGGG
1 AAGACGATAAACTAGTTTCGGG
*
118793962 AAAACGAT
1 AAGACGAT
118793970 GAATGGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.21
Consensus pattern (22 bp):
AAGACGATAAACTAGTTTCGGG
Found at i:118795850 original size:8 final size:8
Alignment explanation
Indices: 118795837--118795862 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
118795827 CGGTGGATGA
118795837 AGAGCAAG
1 AGAGCAAG
118795845 AGAGCAAG
1 AGAGCAAG
118795853 AGAGCAAG
1 AGAGCAAG
118795861 AG
1 AG
118795863 TTTTATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.38, T:0.00
Consensus pattern (8 bp):
AGAGCAAG
Found at i:118802793 original size:23 final size:23
Alignment explanation
Indices: 118802767--118802812 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
118802757 CAAGTCATTG
* * *
118802767 TAAGAAAATTTGTCAAGTTTAAA
1 TAAGAAAAATTATCAAATTTAAA
118802790 TAAGAAAAATTATCAAATTTAAA
1 TAAGAAAAATTATCAAATTTAAA
118802813 GATTAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (23 bp):
TAAGAAAAATTATCAAATTTAAA
Found at i:118804774 original size:25 final size:25
Alignment explanation
Indices: 118804746--118804796 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
118804736 TGACATCAAC
118804746 TCGGTCAATGAAAATTTTAAATTAA
1 TCGGTCAATGAAAATTTTAAATTAA
*
118804771 TCGGTCAATGAAAATTTTAAGTTAA
1 TCGGTCAATGAAAATTTTAAATTAA
118804796 T
1 T
118804797 TTTATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (25 bp):
TCGGTCAATGAAAATTTTAAATTAA
Found at i:118806109 original size:30 final size:30
Alignment explanation
Indices: 118806073--118806135 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
118806063 ACTTATTTTA
118806073 TTGTTAATTTTATTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* *
118806103 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
118806133 TTG
1 TTG
118806136 CTTGTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:118806235 original size:18 final size:18
Alignment explanation
Indices: 118806211--118806254 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
118806201 TTATTGGAAA
* *
118806211 ATATTTTTGATGT-TTTT
1 ATATTTTTAATGTATTAT
118806228 AGTATTTTTAATGTATTAT
1 A-TATTTTTAATGTATTAT
118806247 ATATTTTT
1 ATATTTTT
118806255 TAAAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (18 bp):
ATATTTTTAATGTATTAT
Found at i:118824672 original size:12 final size:12
Alignment explanation
Indices: 118824655--118824693 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
118824645 AATCATATTT
*
118824655 TATATCTATATC
1 TATATCTATATA
118824667 TATATCTATATA
1 TATATCTATATA
*
118824679 TATATATATATA
1 TATATCTATATA
118824691 TAT
1 TAT
118824694 GCTTACATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (12 bp):
TATATCTATATA
Found at i:118824680 original size:2 final size:2
Alignment explanation
Indices: 118824655--118824693 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
118824645 AATCATATTT
* * *
118824655 TA TA TC TA TA TC TA TA TC TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118824694 GCTTACATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:118831606 original size:2 final size:2
Alignment explanation
Indices: 118831599--118831632 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
118831589 GAAAATGGTA
118831599 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118831633 TCATTCCAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118834231 original size:2 final size:2
Alignment explanation
Indices: 118834224--118834255 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
118834214 ACATACTAAC
118834224 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118834256 GTATGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118834264 original size:2 final size:2
Alignment explanation
Indices: 118834259--118834287 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
118834249 TATATATGTA
118834259 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
118834288 CATTCACAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:118835423 original size:2 final size:2
Alignment explanation
Indices: 118835416--118835453 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
118835406 GTTCTGAATA
*
118835416 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118835454 TTAAACCAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:118838771 original size:23 final size:21
Alignment explanation
Indices: 118838745--118838793 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
118838735 TAACTGAATA
118838745 TAAAGTAAATAAATTTTCATT-TT
1 TAAAGTAAAT--ATTTTC-TTATT
*
118838768 TAAAATAAATATTTTCTTATT
1 TAAAGTAAATATTTTCTTATT
118838789 TAAAG
1 TAAAG
118838794 CAATTTAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.09
21 12 0.52
23 9 0.39
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (21 bp):
TAAAGTAAATATTTTCTTATT
Found at i:118839180 original size:82 final size:82
Alignment explanation
Indices: 118839075--118839230 Score: 278
Period size: 82 Copynumber: 1.9 Consensus size: 82
118839065 AAAACACTAT
* *
118839075 TAAAGGACATTAGGTGTATGAGCACGATTAGCATGCACTAATCCTTGAATTAAAATGGGAA-GGT
1 TAAAGGACATTAGGTGTATGAGCACGATTAGCATGCACTAATCCCTGAATTAAAAT-AGAAGGGT
118839139 CTTCAAACAATCATAAGC
65 CTTCAAACAATCATAAGC
118839157 TAAAGGACATTAGGTGTATGAGCACGATTAGCATGCACTAATCCCTGAATTAAAATAGAAGGGTC
1 TAAAGGACATTAGGTGTATGAGCACGATTAGCATGCACTAATCCCTGAATTAAAATAGAAGGGTC
118839222 TTCAAACAA
66 TTCAAACAA
118839231 CCACTAGCTG
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
81 3 0.04
82 68 0.96
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (82 bp):
TAAAGGACATTAGGTGTATGAGCACGATTAGCATGCACTAATCCCTGAATTAAAATAGAAGGGTC
TTCAAACAATCATAAGC
Found at i:118844137 original size:29 final size:30
Alignment explanation
Indices: 118844080--118844158 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
118844070 CTAACGACTT
* *
118844080 TATAAAATTTTATAATTTTTTCTATATTTC
1 TATAAAATATTATAATTTTTTCTAGATTTC
* *
118844110 TAT-ATATATTATAATTTTTT-TACGATTTT
1 TATAAAATATTATAATTTTTTCTA-GATTTC
*
118844139 TATAAAATTTTATAATTTTT
1 TATAAAATATTATAATTTTT
118844159 AAATAATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 2 0.05
29 22 0.54
30 17 0.41
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (30 bp):
TATAAAATATTATAATTTTTTCTAGATTTC
Found at i:118844168 original size:30 final size:29
Alignment explanation
Indices: 118844078--118844173 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 29
118844068 TTCTAACGAC
*
118844078 TTTATAAAATTTTATAATTTTTTCTATATT
1 TTTATAAAATTTTATAATTTTTTATA-ATT
* * *
118844108 TCTAT-ATATATTATAATTTTTT-TACGATT
1 TTTATAAAATTTTATAATTTTTTATA--ATT
*
118844137 TTTATAAAATTTTATAATTTTTAAATAATT
1 TTTATAAAATTTTATAATTTTT-TATAATT
118844167 TTTATAA
1 TTTATAA
118844174 TTTTTTCTTC
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.04
29 22 0.41
30 28 0.52
32 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.59
Consensus pattern (29 bp):
TTTATAAAATTTTATAATTTTTTATAATT
Found at i:118844171 original size:20 final size:21
Alignment explanation
Indices: 118844120--118844178 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
118844110 TATATATATT
*
118844120 ATAATTTTTTTACGATTTTTATA
1 ATAATTTTTATA--ATTTTTATA
118844143 A-AA-TTTTATAATTTTTA-A
1 ATAATTTTTATAATTTTTATA
118844161 ATAATTTTTATAATTTTT
1 ATAATTTTTATAATTTTT
118844179 TCTTCTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 2 0.06
19 9 0.27
20 13 0.39
21 6 0.18
22 2 0.06
23 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
ATAATTTTTATAATTTTTATA
Found at i:118844233 original size:20 final size:20
Alignment explanation
Indices: 118844186--118844233 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
118844176 TTTTCTTCTA
*
118844186 ATTTTTAATAAAATTTAAAT
1 ATTTTTATTAAAATTTAAAT
*
118844206 ATTTTTATTAAAATTTAATT
1 ATTTTTATTAAAATTTAAAT
118844226 ATTTTTAT
1 ATTTTTAT
118844234 AACTTTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTTTATTAAAATTTAAAT
Found at i:118864706 original size:29 final size:29
Alignment explanation
Indices: 118864664--118864721 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
118864654 TAACTGTATA
*
118864664 AGGCTCTAACCAAACAATTAAAATTTTGT
1 AGGCTCCAACCAAACAATTAAAATTTTGT
118864693 AGGCTCCAACCAAACAATTAAAATTTTGT
1 AGGCTCCAACCAAACAATTAAAATTTTGT
118864722 TTACCATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.29
Consensus pattern (29 bp):
AGGCTCCAACCAAACAATTAAAATTTTGT
Found at i:118864784 original size:1 final size:1
Alignment explanation
Indices: 118864778--118864802 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
118864768 CTTTGATGAC
118864778 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
118864803 CTTTTCCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:118866653 original size:2 final size:2
Alignment explanation
Indices: 118866648--118866687 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
118866638 TTGAATCTGT
118866648 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118866688 TAATGCCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:118872114 original size:41 final size:41
Alignment explanation
Indices: 118872057--118872146 Score: 157
Period size: 41 Copynumber: 2.2 Consensus size: 41
118872047 AGCCTATAAA
118872057 TAGACATAGTTTATTCCTCTTGTATTAGATTCCAAATTTTC
1 TAGACATAGTTTATTCCTCTTGTATTAGATTCCAAATTTTC
*
118872098 TAGACATAGTTTATTCCTCTTGTATTAGATTCTAAATTTTC
1 TAGACATAGTTTATTCCTCTTGTATTAGATTCCAAATTTTC
118872139 --GACATAGT
1 TAGACATAGT
118872147 GAATTTTATT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
39 8 0.17
41 40 0.83
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.46
Consensus pattern (41 bp):
TAGACATAGTTTATTCCTCTTGTATTAGATTCCAAATTTTC
Found at i:118872224 original size:12 final size:12
Alignment explanation
Indices: 118872207--118872231 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
118872197 AAAATTTGTG
118872207 TATTTTTTATTT
1 TATTTTTTATTT
118872219 TATTTTTTATTT
1 TATTTTTTATTT
118872231 T
1 T
118872232 TCACAGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:118876110 original size:46 final size:46
Alignment explanation
Indices: 118876057--118876232 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
118876047 TATTTGGGCA
118876057 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
118876103 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* * *
118876150 TCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
118876196 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118876233 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 72 0.67
47 36 0.33
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:118876212 original size:93 final size:93
Alignment explanation
Indices: 118876053--118876224 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
118876043 GGGATATTTG
* * *
118876053 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
118876118 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
118876146 GGCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
118876211 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
118876225 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:118879344 original size:12 final size:12
Alignment explanation
Indices: 118879327--118879352 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
118879317 TTATGTGTTC
118879327 TTTATTTTATTT
1 TTTATTTTATTT
118879339 TTTATTTTATTT
1 TTTATTTTATTT
118879351 TT
1 TT
118879353 CACAGATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:118884936 original size:187 final size:186
Alignment explanation
Indices: 118884596--118884943 Score: 482
Period size: 187 Copynumber: 1.9 Consensus size: 186
118884586 AAAATTGATG
*
118884596 ATGATGATAATAAAAATAAATGATCATGTTTGCATGCATTTACAGCAACAAAGATAAGACAGCAA
1 ATGATAATAATAAAAATAAATGATCATGTTTGCATGCATTTACAGCAACAAAGATAAGACAGCAA
* * ***** *
118884661 GTGTCTATTTTGGTGAATATCGTTGAAACGACAGAGGTTGTTACGAGAGCTTATCAAATATATGC
66 GTGTCTATATTGGTGAATATCGTTGAAACAACAGAGGCAACAACAAGAGCTTATCAAATATATGC
*
118884726 ATGCAATGGCTTTGAATCATTAGAATGTTATAAATGCCATTAAAAAAAAACTAATT
131 ATGCAATGGCCTTGAATCATTAGAATGTTATAAATGCCATTAAAAAAAAACTAATT
* * * * ** * *
118884782 ATGATAATAATAATGAATGAATGATTATGTTTGCATGCATTTACAGCTATGAAGA-AGAGTCAGT
1 ATGATAATAATAA-AAATAAATGATCATGTTTGCATGCATTTACAGCAACAAAGATA-AGACAGC
* *
118884846 AAGTGTCTATATTGGTGAATATTGTTGGAACAACAGAGGCAACAACAAGAGCTTATCAAATATAT
64 AAGTGTCTATATTGGTGAATATCGTTGAAACAACAGAGGCAACAACAAGAGCTTATCAAATATAT
*
118884911 GCATGCAGTGGCCTTGAATCATTAGAATGTTAT
129 GCATGCAATGGCCTTGAATCATTAGAATGTTAT
118884944 GATCATTAGT
Statistics
Matches: 139, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
186 13 0.09
187 126 0.91
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.30
Consensus pattern (186 bp):
ATGATAATAATAAAAATAAATGATCATGTTTGCATGCATTTACAGCAACAAAGATAAGACAGCAA
GTGTCTATATTGGTGAATATCGTTGAAACAACAGAGGCAACAACAAGAGCTTATCAAATATATGC
ATGCAATGGCCTTGAATCATTAGAATGTTATAAATGCCATTAAAAAAAAACTAATT
Found at i:118885600 original size:124 final size:125
Alignment explanation
Indices: 118885376--118885625 Score: 403
Period size: 124 Copynumber: 2.0 Consensus size: 125
118885366 AAAACCATAA
* * * *
118885376 AACATACTTTTACTTAAGCTAAAATTTTACTAAATTCCAATGGTCACTTTAGGTTCAGCCCACTA
1 AACATACTTTTAATTAAGCTAAAATTTTACTAAATTCCAATAGTCACATTAGGTTCAACCCACTA
* *
118885441 CGTAAACTCATACATTTTGTCCAAGGGTTAAACCCAAAGCCTAATGTGTGATGATTATAG
66 CGTAAACTCATACACTTAGTCCAAGGGTTAAACCCAAAGCCTAATGTGTGATGATTATAG
* *
118885501 AACATACTTTTAATTAAGCTAAACTTTTAGTAAATTCCAATAGTCACATTA-GTTCAACCCACTA
1 AACATACTTTTAATTAAGCTAAAATTTTACTAAATTCCAATAGTCACATTAGGTTCAACCCACTA
* *
118885565 TGTAAACTCATACACTTAGTCCAAGGGTTAAACCCAAAGCCTAATGTTTGATGATTATAG
66 CGTAAACTCATACACTTAGTCCAAGGGTTAAACCCAAAGCCTAATGTGTGATGATTATAG
118885625 A
1 A
118885626 TAATTTCAGA
Statistics
Matches: 115, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
124 69 0.60
125 46 0.40
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (125 bp):
AACATACTTTTAATTAAGCTAAAATTTTACTAAATTCCAATAGTCACATTAGGTTCAACCCACTA
CGTAAACTCATACACTTAGTCCAAGGGTTAAACCCAAAGCCTAATGTGTGATGATTATAG
Found at i:118887807 original size:24 final size:25
Alignment explanation
Indices: 118887775--118887821 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
118887765 TATATCCTTA
118887775 GAAG-AAAAAAAATCAAATTTTTGT
1 GAAGAAAAAAAAATCAAATTTTTGT
118887799 GAAGAAAAAAAAATCAAATTTTT
1 GAAGAAAAAAAAATCAAATTTTT
118887822 TGTGCCACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (25 bp):
GAAGAAAAAAAAATCAAATTTTTGT
Found at i:118891414 original size:13 final size:13
Alignment explanation
Indices: 118891396--118891420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118891386 GCATAACTGA
118891396 AAACAGAAAACAG
1 AAACAGAAAACAG
118891409 AAACAGAAAACA
1 AAACAGAAAACA
118891421 AATTAAGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.16, G:0.12, T:0.00
Consensus pattern (13 bp):
AAACAGAAAACAG
Found at i:118895121 original size:61 final size:64
Alignment explanation
Indices: 118895021--118895142 Score: 182
Period size: 61 Copynumber: 2.0 Consensus size: 64
118895011 AAAATAAATA
*
118895021 ATACATTAAATTAAAGAAACAACTCTTAATTTAAAAAAATAAA-GTTACTTATCTAAGAAAATTT
1 ATACATTAAATTAAAGAAACAACTCTTAATTTAAAAAAATAAACG-TAATTATCTAAGAAAATTT
118895085 ATACATTAAATT-AA-AAA-AACTCTTAA-TTAAAGAAAATAAACGTAATTATCTAAGAAAA
1 ATACATTAAATTAAAGAAACAACTCTTAATTTAAA-AAAATAAACGTAATTATCTAAGAAAA
118895143 ATTAACTCTT
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
60 5 0.09
61 32 0.58
62 4 0.07
63 2 0.04
64 12 0.22
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (64 bp):
ATACATTAAATTAAAGAAACAACTCTTAATTTAAAAAAATAAACGTAATTATCTAAGAAAATTT
Found at i:118901224 original size:44 final size:44
Alignment explanation
Indices: 118901167--118901251 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
118901157 TTCTTTCATA
* * *
118901167 TCTAGAAGTCCTTTGTTCCATTTCTTTTAAAGATAATCTCGCAG
1 TCTAGAAGCCCTTTGTTCCATTTCTTTCAAAGATAAGCTCGCAG
*
118901211 TCTAGAAGCCCTTTGTTCCATTTCTTTCAAGGATAAGCTCG
1 TCTAGAAGCCCTTTGTTCCATTTCTTTCAAAGATAAGCTCG
118901252 AAGTTTTCGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (44 bp):
TCTAGAAGCCCTTTGTTCCATTTCTTTCAAAGATAAGCTCGCAG
Found at i:118903307 original size:21 final size:19
Alignment explanation
Indices: 118903283--118903322 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
118903273 TTAGTAGTTT
118903283 CATATTTTAAAGATATTTAAA
1 CATATTTTAAAG-T-TTTAAA
118903304 CATATTTTAAAGTTTTAAA
1 CATATTTTAAAGTTTTAAA
118903323 ATGAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 12 0.63
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
CATATTTTAAAGTTTTAAA
Found at i:118906921 original size:23 final size:24
Alignment explanation
Indices: 118906877--118906921 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
118906867 TTAAATATAA
*
118906877 AAATTAATTAATATTTAATTTTTT
1 AAATTAATAAATATTTAATTTTTT
*
118906901 AAATTACTAAATA-TTAATTTT
1 AAATTAATAAATATTTAATTTT
118906922 ATCCATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
AAATTAATAAATATTTAATTTTTT
Found at i:118914401 original size:19 final size:19
Alignment explanation
Indices: 118914377--118914417 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
118914367 CCCTCAATAA
118914377 GTGGTATTGTTTTGGGGTT
1 GTGGTATTGTTTTGGGGTT
118914396 GTGGTATTGTTTTGGGGTT
1 GTGGTATTGTTTTGGGGTT
118914415 GTG
1 GTG
118914418 TTAGGGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.05, C:0.00, G:0.44, T:0.51
Consensus pattern (19 bp):
GTGGTATTGTTTTGGGGTT
Found at i:118914426 original size:19 final size:19
Alignment explanation
Indices: 118914385--118914428 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
118914375 AAGTGGTATT
**
118914385 GTTTTGGGGTTGTGGTATT
1 GTTTTGGGGTTGTGGTAGG
*
118914404 GTTTTGGGGTTGTGTTAGG
1 GTTTTGGGGTTGTGGTAGG
118914423 GTTTTG
1 GTTTTG
118914429 TCTCTTGCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.05, C:0.00, G:0.43, T:0.52
Consensus pattern (19 bp):
GTTTTGGGGTTGTGGTAGG
Found at i:118921389 original size:33 final size:33
Alignment explanation
Indices: 118921352--118921422 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
118921342 CTATTGGCAC
118921352 TATAAATGCATTTTAAAGCAACCTTATTTAAGT
1 TATAAATGCATTTTAAAGCAACCTTATTTAAGT
118921385 TATAAATGCATTTTAAAGCAACCTTATTTAAGT
1 TATAAATGCATTTTAAAGCAACCTTATTTAAGT
118921418 TATAA
1 TATAA
118921423 CATGTTAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.39
Consensus pattern (33 bp):
TATAAATGCATTTTAAAGCAACCTTATTTAAGT
Found at i:118925972 original size:35 final size:35
Alignment explanation
Indices: 118925925--118926003 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
118925915 AAATCATGAA
* * *
118925925 AAAAATTGATGGGCAGGGTAATCATAATGCAA-CAT
1 AAAAATTAATGGGCAGGATAATCATAAAG-AACCAT
118925960 AAAAATTAATGGGCAGGATAATCATAAAGAACCAT
1 AAAAATTAATGGGCAGGATAATCATAAAGAACCAT
118925995 AAAAATTAA
1 AAAAATTAA
118926004 GTATAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
34 2 0.05
35 38 0.95
ACGTcount: A:0.51, C:0.10, G:0.18, T:0.22
Consensus pattern (35 bp):
AAAAATTAATGGGCAGGATAATCATAAAGAACCAT
Found at i:118933832 original size:22 final size:22
Alignment explanation
Indices: 118933807--118933851 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
118933797 CAGAAAACAA
*
118933807 ATCCCTACAAATCAGTTCTATG
1 ATCCCTACAAATCAGCTCTATG
118933829 ATCCCTACAAATCAGCTCTATG
1 ATCCCTACAAATCAGCTCTATG
118933851 A
1 A
118933852 ATCAGCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.29
Consensus pattern (22 bp):
ATCCCTACAAATCAGCTCTATG
Found at i:118937985 original size:14 final size:13
Alignment explanation
Indices: 118937956--118937999 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
118937946 TTGATTTTTT
118937956 ATTTTTTATATTA
1 ATTTTTTATATTA
*
118937969 ATTTTTTATTTTA
1 ATTTTTTATATTA
* * *
118937982 AATTTTTAGATTT
1 ATTTTTTATATTA
118937995 ATTTT
1 ATTTT
118938000 AATAAAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (13 bp):
ATTTTTTATATTA
Found at i:118945399 original size:16 final size:17
Alignment explanation
Indices: 118945369--118945400 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
118945359 AACTCGAATA
118945369 ATTTAAATCTTAAAATG
1 ATTTAAATCTTAAAATG
118945386 ATTTAAAT-TTAAAAT
1 ATTTAAATCTTAAAAT
118945401 AAAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTTAAATCTTAAAATG
Found at i:118951953 original size:15 final size:15
Alignment explanation
Indices: 118951933--118951979 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
118951923 TAGCTCAGTA
118951933 TATATTTTAGTTATT
1 TATATTTTAGTTATT
* **
118951948 TATATTTAAAATA-T
1 TATATTTTAGTTATT
118951962 TATATTTTAGTTATT
1 TATATTTTAGTTATT
118951977 TAT
1 TAT
118951980 GTAATTGTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
TATATTTTAGTTATT
Found at i:118951976 original size:14 final size:14
Alignment explanation
Indices: 118951933--118951976 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
118951923 TAGCTCAGTA
118951933 TATATTTTAGTTATT
1 TATATTTTAGTTA-T
* **
118951948 TATATTTAAAATAT
1 TATATTTTAGTTAT
118951962 TATATTTTAGTTAT
1 TATATTTTAGTTAT
118951976 T
1 T
118951977 TATGTAATTG
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (14 bp):
TATATTTTAGTTAT
Found at i:118958397 original size:75 final size:75
Alignment explanation
Indices: 118958239--118958402 Score: 186
Period size: 75 Copynumber: 2.2 Consensus size: 75
118958229 ATAACCATTT
* * * * *
118958239 GTTAATCCGATTAGCGCTGGGCGCAATTACTGTTGGTTTATCCAACTAAAGCTGGGCTCAAAATC
1 GTTAATCCGACTAGCACTGGGCGCAAATACTATTGGTTAATCCAACTAAAGCTGGGCTCAAAATC
*
118958304 ATTATCGTCG
66 ATTATCATCG
* * * * ***
118958314 G-TATATCCGACTAGCATTGGGTGCAAATATTATTGGTTAATCCAACTAGAGCTGGGCTCACTTT
1 GTTA-ATCCGACTAGCACTGGGCGCAAATACTATTGGTTAATCCAACTAAAGCTGGGCTCAAAAT
118958378 CATTATCATCG
65 CATTATCATCG
*
118958389 GTTAATCCGGCTAG
1 GTTAATCCGACTAG
118958403 GCACGGGGTG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
74 2 0.03
75 69 0.95
76 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (75 bp):
GTTAATCCGACTAGCACTGGGCGCAAATACTATTGGTTAATCCAACTAAAGCTGGGCTCAAAATC
ATTATCATCG
Found at i:118958879 original size:21 final size:21
Alignment explanation
Indices: 118958853--118958894 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
118958843 TGTATTAATG
118958853 GTACACGTTTTAAGTCAATTC
1 GTACACGTTTTAAGTCAATTC
*
118958874 GTACACGTTTTAAGTGAATTC
1 GTACACGTTTTAAGTCAATTC
118958895 TTGGATTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
GTACACGTTTTAAGTCAATTC
Found at i:118962361 original size:131 final size:129
Alignment explanation
Indices: 118962160--118962447 Score: 429
Period size: 131 Copynumber: 2.2 Consensus size: 129
118962150 CTAGACATTG
* ** *
118962160 AACATTGCCTT-GTTTT--AGAATTTAGAAAACATGAGTGAAATTTAAAGGGATATTCGATTATT
1 AACATTCCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCAAAGGGATATTCGATTATT
*
118962222 TTGAACAAACGGGAAATTACAACCCAGCACGATAGGGTACGATTCCCCGAATTGCGAAACATCA
66 TTGAACAAACGGGAAATTACAACCCAGCACGATAGGGTACGATTCCCCGAATTGCCAAACATCA
118962286 AACATTCCCTTCGTTTTAAAGAATTTTTAAAGACATGAGTGAAATTCCAAAGGGATATTCGATTA
1 AACATTCCCTTCGTTTTAAAGAATTTTTAAA-ACATGAGTGAAATT-CAAAGGGATATTCGATTA
* * * * *
118962351 TTTTGAACAAACGGGAAATTGCAACCCAGCATGGTAGGGTACGATTTCCCGAATTGCCAAATATC
64 TTTTGAACAAACGGGAAATTACAACCCAGCACGATAGGGTACGATTCCCCGAATTGCCAAACATC
*
118962416 G
129 A
*
118962417 AACATTTCCTTCGTTTTAAAGAATTTTTAAA
1 AACATTCCCTTCGTTTTAAAGAATTTTTAAA
118962448 TGAATAATTA
Statistics
Matches: 145, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
126 10 0.07
127 5 0.03
129 10 0.07
130 14 0.10
131 106 0.73
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.30
Consensus pattern (129 bp):
AACATTCCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCAAAGGGATATTCGATTATT
TTGAACAAACGGGAAATTACAACCCAGCACGATAGGGTACGATTCCCCGAATTGCCAAACATCA
Found at i:118963142 original size:2 final size:2
Alignment explanation
Indices: 118963135--118963161 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
118963125 GAGGTTAATA
118963135 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
118963162 AATTTAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:118969578 original size:28 final size:29
Alignment explanation
Indices: 118969513--118969584 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
118969503 ATAATACGTG
118969513 TAATTTGTTGGAGTTACATAGGCGTTTTT
1 TAATTTGTTGGAGTTACATAGGCGTTTTT
118969542 TAATTTGTTGGAGTTACATAGGCGTTTTT
1 TAATTTGTTGGAGTTACATAGGCGTTTTT
118969571 TAA-TTGTTGGAGTT
1 TAATTTGTTGGAGTT
118969585 TTACTCATAC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 11 0.26
29 32 0.74
ACGTcount: A:0.21, C:0.06, G:0.25, T:0.49
Consensus pattern (29 bp):
TAATTTGTTGGAGTTACATAGGCGTTTTT
Found at i:118976070 original size:15 final size:15
Alignment explanation
Indices: 118976028--118976072 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
118976018 GGAAACGATC
*
118976028 TTGTTCTTTATTATTG
1 TTGTTC-TTATTGTTG
*
118976044 TTGTTCTGATTGTTG
1 TTGTTCTTATTGTTG
*
118976059 TTGTTGTTATTGTT
1 TTGTTCTTATTGTT
118976073 ATTGCTATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 19 0.76
16 6 0.24
ACGTcount: A:0.09, C:0.04, G:0.20, T:0.67
Consensus pattern (15 bp):
TTGTTCTTATTGTTG
Found at i:118977243 original size:13 final size:14
Alignment explanation
Indices: 118977199--118977256 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
118977189 GTAGGGTTAT
*
118977199 GAAACAGAAAAGAGA
1 GAAAAAGAAAAGA-A
118977214 GGAAAAAG-AAA-AA
1 -GAAAAAGAAAAGAA
*
118977227 -AAAAA-AAAAGGA
1 GAAAAAGAAAAGAA
118977239 GAAAAAGAAAAGAA
1 GAAAAAGAAAAGAA
118977253 GAAA
1 GAAA
118977257 TTTAAAGAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
11 8 0.23
12 1 0.03
13 6 0.17
14 11 0.31
15 3 0.09
16 6 0.17
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (14 bp):
GAAAAAGAAAAGAA
Found at i:118978080 original size:29 final size:29
Alignment explanation
Indices: 118978026--118978082 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
118978016 TAAGCTAAAA
* *
118978026 AATTGATAATACATATTAGACGTATATAT
1 AATTGATAATACATATAAGACATATATAT
*
118978055 AATTGATAATTCATATAAGTA-ATATATA
1 AATTGATAATACATATAAG-ACATATATA
118978083 AAATATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.39
Consensus pattern (29 bp):
AATTGATAATACATATAAGACATATATAT
Found at i:118978711 original size:23 final size:25
Alignment explanation
Indices: 118978685--118978731 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
118978675 TATCATTCAT
*
118978685 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
118978708 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
118978732 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:118979062 original size:46 final size:46
Alignment explanation
Indices: 118978992--118979302 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
118978982 TTTGACGTGA
* * * * * *
118978992 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
118979038 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
118979084 TGCCATGGTATCTTTCAACCATGGTCTTATACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
118979130 TGCCATGGTATCTTTCAA-CATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
118979175 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
118979221 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
118979259 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
118979303 AGAGCACACT
Statistics
Matches: 242, Mismatches: 13, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
38 33 0.14
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 48 0.20
46 152 0.63
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:118979194 original size:91 final size:91
Alignment explanation
Indices: 118978992--118979302 Score: 424
Period size: 91 Copynumber: 3.5 Consensus size: 91
118978982 TTTGACGTGA
* * * * * *
118978992 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
* * * *
118979056 CCATGGTCTTATTCTTTTCATGTCACGT
65 CCATGGTCTTA-ACATTTCATATCAGGT
* *
118979084 TGCCATGGTATCTTTCAACCATGGTCTTATACATCTCATATCAGGTTGCCATGGTATCTTTCAA-
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
118979148 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTA-ACATTTCATATCAGGT
118979175 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
118979240 CATGGTCTT-ACA---C--A-CAGGT
66 CATGGTCTTAACATTTCATATCAGGT
118979259 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
118979303 AGAGCACACT
Statistics
Matches: 202, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
84 49 0.24
85 1 0.00
87 1 0.00
90 3 0.01
91 87 0.43
92 61 0.30
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTAACATTTCATATCAGGT
Found at i:118979267 original size:38 final size:38
Alignment explanation
Indices: 118979216--118979291 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
118979206 CATTTCATAT
118979216 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
118979254 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
118979292 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:118983638 original size:13 final size:13
Alignment explanation
Indices: 118983620--118983650 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
118983610 TTCTTGTAAA
118983620 CATTTCATACAAC
1 CATTTCATACAAC
*
118983633 CATTTCATATAAC
1 CATTTCATACAAC
118983646 CATTT
1 CATTT
118983651 GTCATCTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (13 bp):
CATTTCATACAAC
Found at i:118983981 original size:135 final size:135
Alignment explanation
Indices: 118983738--118984094 Score: 518
Period size: 135 Copynumber: 2.6 Consensus size: 135
118983728 TTTGACATGA
* * * *
118983738 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATGTCATGTTGCCATGGTATCTTTCAAC
* * *
118983803 CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTA
66 CATGGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTATTC-TTTCA
118983868 TGTCAC
130 TGTCAC
* * * *
118983874 -GCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTGCAATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATGTCATGTTGCCATGGTATCTTTCAAC
*
118983938 CATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTATTCTTTCAT
66 CATGGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTATTCTTTCAT
118984003 GTCAC
131 GTCAC
* * *
118984008 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCA
1 --TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATGTCATGTTGCCATGGTATCTTTCA
* **
118984073 ACCACGGTCTTACGCATTTCAT
64 ACCATGGTCTTATTCATTTCAT
118984095 TTCAGAAAGC
Statistics
Matches: 195, Mismatches: 23, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
134 10 0.05
135 112 0.57
137 73 0.37
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (135 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTATTCTTTCAT
GTCAC
Found at i:118984085 original size:46 final size:46
Alignment explanation
Indices: 118983733--118984094 Score: 491
Period size: 46 Copynumber: 8.0 Consensus size: 46
118983723 TTATCTTTGA
* * * * *
118983733 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
118983779 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
118983825 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
118983871 CA---CGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * *
118983914 CACGCTGCAATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
118983960 CATGTTGCCATGGTATCTTTCAAACATGGTCTTATTC-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* ** *
118984005 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
118984051 CATGTTGCCATGGTATCTTTCAACCACGGTCTTACGCATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
118984095 TTCAGAAAGC
Statistics
Matches: 285, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
43 42 0.15
45 44 0.15
46 199 0.70
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:118992706 original size:3 final size:3
Alignment explanation
Indices: 118992693--118992732 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
118992683 AGTTTAAAGG
118992693 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
118992733 ACTAAAGGCC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:118996697 original size:69 final size:69
Alignment explanation
Indices: 118996615--118996754 Score: 183
Period size: 69 Copynumber: 2.0 Consensus size: 69
118996605 ACTTTTGTCA
* *
118996615 ACCTTATCCCCTTTAGGGAAAACTTCTTTTGAGCTCTTTTTCACCTGA-TCATCAGAGCTTTTAT
1 ACCTTATCCCCTTTAGGGAAAACTTCATTTGAACTCTTTTTCACCTGACT-ATCAGAGCTTTTAT
118996679 CAAAC
65 CAAAC
* * ** * *
118996684 ACCTTATCGCCTTTTGGGGCATCTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATC
1 ACCTTATCCCCTTTAGGGAAAACTTCATTTGAACTCTTTTTCACCTGACTATCAGAGCTTTTATC
*
118996749 GAAC
66 AAAC
118996753 AC
1 AC
118996755 ATTGTCATTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 60 0.98
70 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.39
Consensus pattern (69 bp):
ACCTTATCCCCTTTAGGGAAAACTTCATTTGAACTCTTTTTCACCTGACTATCAGAGCTTTTATC
AAAC
Found at i:118996838 original size:159 final size:159
Alignment explanation
Indices: 118996547--118997105 Score: 906
Period size: 159 Copynumber: 3.5 Consensus size: 159
118996537 GATGGGAAAA
* * *
118996547 CTTCATTTGAGCTCTTTTTCACTTGACTACCAGAGCTTTTATCGAACACATTGTCATTACTTTTG
1 CTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATCGAACACATTGTCATTATTTTTG
* *
118996612 TCAACCTTATCCCCTTTAGGGAAAACTTCTTTTGAGCTCTTTTTCACCTGATCATCAGAGCTTTT
66 TCAACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTTTT
*
118996677 ATCAAACACCTTATCGCCTTTTGGGGCAT
131 ATCAAACACCTTATCTCCTTTTGGGGCAT
118996706 CTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATCGAACACATTGTCATTATTTTTG
1 CTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATCGAACACATTGTCATTATTTTTG
* *
118996771 TCAACCTTATCCACTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTATT
66 TCAACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTTTT
118996836 ATCAAACACCTTATCTCCTTTTGGGGCAT
131 ATCAAACACCTTATCTCCTTTTGGGGCAT
*
118996865 CTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATCGAACCCATTGTCATTATTTTTG
1 CTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATCGAACACATTGTCATTATTTTTG
118996930 TCAACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTTTT
66 TCAACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTTTT
*
118996995 ATCAAACACCTTATCTCCTTTTGGGGAAT
131 ATCAAACACCTTATCTCCTTTTGGGGCAT
* * * * * *
118997024 CTTCATTTGAACTCTTCTTTTTCACCTGA-TCAGCTGAGCGTTTATCCG-ACACCTTGTCATCAT
1 CTTCATTTGAA--C-TCTTTTTCACTTGACT-ATCAGAGCTTTTAT-CGAACACATTGTCATTAT
*
118997087 TTTTATCAACCTTATCCCC
61 TTTTGTCAACCTTATCCCC
118997106 ATAAGTCCTG
Statistics
Matches: 375, Mismatches: 20, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
159 317 0.85
161 2 0.01
162 54 0.14
163 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (159 bp):
CTTCATTTGAACTCTTTTTCACTTGACTATCAGAGCTTTTATCGAACACATTGTCATTATTTTTG
TCAACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTTTT
ATCAAACACCTTATCTCCTTTTGGGGCAT
Found at i:118997076 original size:72 final size:69
Alignment explanation
Indices: 118996933--118997078 Score: 166
Period size: 72 Copynumber: 2.1 Consensus size: 69
118996923 ATTTTTGTCA
* *
118996933 ACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCATCAAAGCTTTTATC
1 ACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCAGCAAAGCGTTTATC
118996998 AAAC
66 AAAC
* * * * * **
118997002 ACCTTATCTCCTTTTGGGGAATCTTCATTTGAACTCTTCTTTTTCACCTGATCAGCTGAGCGTTT
1 ACCTTATCCCCTTTAGGGAAAACTTCATTTG-A-GC-TCTTTTTCACCTGATCAGCAAAGCGTTT
**
118997067 ATCCGAC
63 ATCAAAC
118997074 ACCTT
1 ACCTT
118997079 GTCATCATTT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
69 27 0.43
70 1 0.02
71 1 0.02
72 34 0.54
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (69 bp):
ACCTTATCCCCTTTAGGGAAAACTTCATTTGAGCTCTTTTTCACCTGATCAGCAAAGCGTTTATC
AAAC
Found at i:118998240 original size:21 final size:22
Alignment explanation
Indices: 118998194--118998244 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
118998184 GATCAACAAC
*
118998194 AAAAC-AAAGAAATCTAACTCG
1 AAAACAAAAGAAATATAACTCG
* *
118998215 GAAACAAAAGAAATATACCT-G
1 AAAACAAAAGAAATATAACTCG
118998236 AAAACAAAA
1 AAAACAAAA
118998245 ATGGAAAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.63, C:0.16, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAACAAAAGAAATATAACTCG
Found at i:118998956 original size:19 final size:19
Alignment explanation
Indices: 118998932--118998976 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
118998922 ATCTTGATTC
*
118998932 TTAAAAATTTAAAAAAA-CT
1 TTAAAAA-TTAAAAAAATAT
118998951 TTAAAAA-TAAAAAAATAT
1 TTAAAAATTAAAAAAATAT
118998969 TTAAAAAT
1 TTAAAAAT
118998977 ATATTTTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 8 0.35
19 7 0.30
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
TTAAAAATTAAAAAAATAT
Found at i:118998963 original size:18 final size:18
Alignment explanation
Indices: 118998941--118998977 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
118998931 CTTAAAAATT
*
118998941 TAAAAAAA-CTTTAAAAA
1 TAAAAAAATATTTAAAAA
118998958 TAAAAAAATATTTAAAAA
1 TAAAAAAATATTTAAAAA
118998976 TA
1 TA
118998978 TATTTTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
TAAAAAAATATTTAAAAA
Found at i:119000291 original size:19 final size:19
Alignment explanation
Indices: 119000262--119000327 Score: 107
Period size: 19 Copynumber: 3.5 Consensus size: 19
119000252 TAATAACTAT
119000262 AAAAATA-TTAAAATTATA
1 AAAAATATTTAAAATTATA
119000280 AAAAATATTTAAAATTATA
1 AAAAATATTTAAAATTATA
*
119000299 AAAAATATTTAAATTTATA
1 AAAAATATTTAAAATTATA
*
119000318 ATAAATATTT
1 AAAAATATTT
119000328 GAATTGCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
18 7 0.16
19 38 0.84
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATATTTAAAATTATA
Found at i:119001514 original size:18 final size:17
Alignment explanation
Indices: 119001491--119001538 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
119001481 TAAACTAATG
119001491 TTTAAAAAATTATCTCAT
1 TTTAAAAAATTATCTC-T
119001509 TTTAAAAAA-TAT-TCT
1 TTTAAAAAATTATCTCT
*
119001524 CTTAAAGAAATTATC
1 TTTAAA-AAATTATC
119001539 ATTAGTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 6 0.23
16 5 0.19
17 6 0.23
18 9 0.35
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (17 bp):
TTTAAAAAATTATCTCT
Found at i:119006344 original size:14 final size:14
Alignment explanation
Indices: 119006327--119006388 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
119006317 ATGTTTGGAA
119006327 TTTAAGGTTTAATG
1 TTTAAGGTTTAATG
119006341 TTTAAGGTTT-ATG
1 TTTAAGGTTTAATG
*
119006354 ATTT-AGAGTTTGGAT-
1 -TTTAAG-GTTT-AATG
119006369 TTTAAGGTTTAGA-G
1 TTTAAGGTTTA-ATG
119006383 TTTAAG
1 TTTAAG
119006389 ATTCAATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
13 5 0.12
14 31 0.77
15 2 0.05
16 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (14 bp):
TTTAAGGTTTAATG
Found at i:119008253 original size:15 final size:15
Alignment explanation
Indices: 119008233--119008268 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
119008223 TTCCCTTGTT
*
119008233 TATTTGTTTCCGGTA
1 TATTTGTTTACGGTA
119008248 TATTTGTTTACGGTA
1 TATTTGTTTACGGTA
119008263 TATTTG
1 TATTTG
119008269 GTTGTTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.17, C:0.08, G:0.19, T:0.56
Consensus pattern (15 bp):
TATTTGTTTACGGTA
Found at i:119010689 original size:3 final size:3
Alignment explanation
Indices: 119010681--119010726 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
119010671 CAATGCTTTT
* * * *
119010681 GCA GCA GCA GCA GCA ACA ACA ACA ACA GCA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
119010727 TTCCTCCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.41, C:0.33, G:0.26, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:119021337 original size:28 final size:27
Alignment explanation
Indices: 119021288--119021341 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
119021278 TAAAATTATC
119021288 TAAAAATATATTTTATTAAATTATTTTT
1 TAAAAATATATTTTATTAAATT-TTTTT
* *
119021316 TAAAAATTTA-TTTATTTTAATTTTTT
1 TAAAAATATATTTTA-TTAAATTTTTT
119021342 ACTAGAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TAAAAATATATTTTATTAAATTTTTTT
Found at i:119021780 original size:28 final size:29
Alignment explanation
Indices: 119021719--119021780 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
119021709 TTTTTATAAA
*
119021719 TTTTAAAGAATTAAAATAAATATTTATAT
1 TTTTAAAGAATTAAAATAAATATTTATAC
* *
119021748 TTTTAAGAGAATTAAAGTATA-ATTT-TAC
1 TTTTAA-AGAATTAAAATAAATATTTATAC
119021776 TTTTA
1 TTTTA
119021781 TTAATTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.24
29 10 0.34
30 12 0.41
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (29 bp):
TTTTAAAGAATTAAAATAAATATTTATAC
Found at i:119028712 original size:2 final size:2
Alignment explanation
Indices: 119028707--119028751 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
119028697 ATATATATAT
* *
119028707 AG AG AG AG AG AG AG AA AG AG AG AG AG AG AA AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
119028749 AG A
1 AG A
119028752 AATATAATAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:119028728 original size:14 final size:14
Alignment explanation
Indices: 119028709--119028749 Score: 82
Period size: 14 Copynumber: 2.9 Consensus size: 14
119028699 ATATATATAG
119028709 AGAGAGAGAGAGAA
1 AGAGAGAGAGAGAA
119028723 AGAGAGAGAGAGAA
1 AGAGAGAGAGAGAA
119028737 AGAGAGAGAGAGA
1 AGAGAGAGAGAGA
119028750 GAAATATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAGAGAA
Found at i:119029714 original size:45 final size:44
Alignment explanation
Indices: 119029650--119029903 Score: 166
Period size: 45 Copynumber: 5.7 Consensus size: 44
119029640 CCTGTCGTTT
*
119029650 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGGAAATGACGAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAAT-ACGAG
*** ** *
119029695 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCTACCAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATACGAG
* * * * * * * * *
119029739 CCTTATCTTTC-TGAAGT-TGC-AGTGGAGTAGGTTGAAGATACAAG
1 TCTTATC-TCCATGTA-TCGGCTA-TGGAGCAGATCGAAAATACGAG
* *
119029783 TCTTATCTTCC-TGAAGT-TGC-A-GGAAGCAGA-CTGAAAATTACG-G
1 TCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATC-GAAAA-TACGAG
*
119029826 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAAT-ACGAG
*
119029872 TCTTATCTCCATGTATCGGCTATGGAGTAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
119029904 TTTAGCCACC
Statistics
Matches: 168, Mismatches: 27, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.01
43 14 0.08
44 66 0.39
45 82 0.49
46 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATACGAG
Found at i:119029765 original size:44 final size:44
Alignment explanation
Indices: 119029717--119029817 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 44
119029707 GTATCGGCTA
** * * *
119029717 TGGAGCAGATTTTAGCTACCAGCCTTATCTTTCTGAAGTTGCAG
1 TGGAGCAGATTGAAGATACAAGCCTTATCTTCCTGAAGTTGCAG
* * *
119029761 TGGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAG
1 TGGAGCAGATTGAAGATACAAGCCTTATCTTCCTGAAGTTGCAG
* *
119029805 -GAAGCAGACTGAA
1 TGGAGCAGATTGAA
119029818 AATTACGGAT
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
43 9 0.20
44 36 0.80
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
TGGAGCAGATTGAAGATACAAGCCTTATCTTCCTGAAGTTGCAG
Found at i:119029952 original size:177 final size:178
Alignment explanation
Indices: 119029650--119030059 Score: 651
Period size: 177 Copynumber: 2.3 Consensus size: 178
119029640 CCTGTCGTTT
* *
119029650 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGGAAATGACGAGTCTTATCTCCATGTATCGGC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGC
* * * *** * *
119029715 TATGGAGCAGATTTTAGCTACCAGCCTTATCTTTCTGAAGTTGCAGTGGAGTAGGTTGAAGATA-
66 TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAAAGAGCAAGTTGAAGATAG
* *
119029779 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACGGA
131 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAATTACAGA
119029827 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGC
* *
119029892 TATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAAAGAGCAAGTTGAAGATAG
66 TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAAAGAGCAAGTTGAAGATAG
*
119029957 CAAGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACTAAAAATTACAGA
131 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAATTACAGA
* * *
119030005 TCTTATCTCCATGTATCGGCTATAGAGCAGATCGAAAATGGTGAGCCTTATCTCC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCC
119030060 CTGAAGTGGC
Statistics
Matches: 214, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
177 117 0.55
178 97 0.45
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (178 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGC
TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGCAAAAGAGCAAGTTGAAGATAG
CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTAAAAATTACAGA
Found at i:119030861 original size:20 final size:18
Alignment explanation
Indices: 119030836--119030872 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
119030826 ATTGCTAAGT
119030836 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
119030856 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
119030873 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:119048347 original size:3 final size:3
Alignment explanation
Indices: 119048251--119048331 Score: 85
Period size: 3 Copynumber: 27.0 Consensus size: 3
119048241 ATTTATTTAC
119048251 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATGT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
** * * *
119048296 -TT ATT ACC ATT AATT ATT ATT ACT ACT ACT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
119048332 TTGTTAGCAT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
2 4 0.06
3 59 0.86
4 6 0.09
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:119048441 original size:3 final size:3
Alignment explanation
Indices: 119048433--119048547 Score: 94
Period size: 3 Copynumber: 38.7 Consensus size: 3
119048423 AGTATTTTCC
* * * *
119048433 ATT ATT ATT ATT ATT ATC ACT ACT ATC ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * *
119048480 ACG A-T ACCTCT -TT ATT ATT ATT ACT ATT -GT ATT ATT ATC ATT ATT
1 ATT ATT A--T-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119048525 ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT AT
119048548 ATTTCCCTTT
Statistics
Matches: 90, Mismatches: 15, Indels: 14
0.76 0.13 0.12
Matches are distributed among these distances:
2 5 0.06
3 84 0.93
6 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:119048676 original size:26 final size:26
Alignment explanation
Indices: 119048620--119048676 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
119048610 TTTTAGCACA
*
119048620 TTTATTTTATTTATTTATCATTTACT
1 TTTATTTTATTTATTTATCATCTACT
*
119048646 CTTATTATTA-TTATTTCATCATCTA-T
1 TTTATT-TTATTTATTT-ATCATCTACT
119048672 TTTAT
1 TTTAT
119048677 CTATAGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTATTTTATTTATTTATCATCTACT
Found at i:119053988 original size:15 final size:14
Alignment explanation
Indices: 119053964--119054010 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
119053954 CATTCAATCC
119053964 AAAA-AAAAAGAGA
1 AAAAGAAAAAGAGA
*
119053977 GAAAAGAAAAAGAAA
1 -AAAAGAAAAAGAGA
119053992 AAAAGAAAAA-AGA
1 AAAAGAAAAAGAGA
119054005 AAAAGA
1 AAAAGA
119054011 GGGGATCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 8 0.27
14 14 0.47
15 8 0.27
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAGA
Found at i:119054000 original size:7 final size:7
Alignment explanation
Indices: 119053967--119054008 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
119053957 TCAATCCAAA
119053967 AAAAAAG
1 AAAAAAG
119053974 AGAGAAAAG
1 A-A-AAAAG
119053983 -AAAAAG
1 AAAAAAG
119053989 AAAAAAAG
1 -AAAAAAG
119053997 AAAAAAG
1 AAAAAAG
119054004 AAAAA
1 AAAAA
119054009 GAGGGGATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 5 0.16
7 14 0.45
8 7 0.23
9 5 0.16
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:119054002 original size:21 final size:23
Alignment explanation
Indices: 119053966--119054010 Score: 76
Period size: 21 Copynumber: 2.0 Consensus size: 23
119053956 TTCAATCCAA
119053966 AAAAAAAGAGAGAAAAGAAAAAG
1 AAAAAAAGAGAGAAAAGAAAAAG
119053989 AAAAAAAGA-A-AAAAGAAAAAG
1 AAAAAAAGAGAGAAAAGAAAAAG
119054010 A
1 A
119054011 GGGGATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 12 0.55
22 1 0.05
23 9 0.41
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (23 bp):
AAAAAAAGAGAGAAAAGAAAAAG
Found at i:119055743 original size:61 final size:65
Alignment explanation
Indices: 119055652--119055772 Score: 187
Period size: 61 Copynumber: 1.9 Consensus size: 65
119055642 CATATAATAA
*
119055652 CACATCTAGTTAGGAGCATTTGATTCATTTC-AT-A-A-CATCCTAATTAGTTGACATAAAACAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCAGTTGACATAAAACAT
* *
119055713 CACATTTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCAGTTGACATAA
119055773 GCATAGATAC
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
61 30 0.57
62 2 0.04
63 1 0.02
64 1 0.02
65 19 0.36
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (65 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCAGTTGACATAAAACAT
Found at i:119056016 original size:43 final size:43
Alignment explanation
Indices: 119055833--119056930 Score: 719
Period size: 43 Copynumber: 25.7 Consensus size: 43
119055823 ATTCACAAGC
* * * *
119055833 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* *
119055878 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GAT
* * * * * *
119055921 CTTAAACCCCTAATCGGTA-GGTAACAGA-CTGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAAGAT
* * *
119055962 CTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* **
119056005 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * *
119056048 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGA-T
* * *
119056092 CTTAACCCCC-AAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* *
119056136 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GAT
* * * * * *
119056180 CTTAAACCCCTAATCGGTAGGGTAACAGA-CTGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAAGAT
* * * *
119056222 CTTATCTCTCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* **
119056265 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * * *
119056308 CTT---CTCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGA-T
* * *
119056348 CTTAACCCCC-AAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
119056392 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAG--G--G-T
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * * *
119056429 CTTAAACCCCTAATCGGTAGGGTAACAGA-CTGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAAGAT
* * *
119056471 CTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* **
119056514 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * *
119056557 CTT---CCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGA-T
* * * *
119056597 CTTAACCCCCCAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* *
119056642 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GAT
* * * * * * *
119056686 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * *
119056728 CTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * **
119056771 CTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * *
119056814 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGA-T
* * *
119056858 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* * *
119056903 CTTAACCCCCTAACCAATAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAG
119056931 GTTGAATTTA
Statistics
Matches: 839, Mismatches: 151, Indels: 126
0.75 0.14 0.11
Matches are distributed among these distances:
37 7 0.01
38 26 0.03
39 13 0.02
40 45 0.05
41 17 0.02
42 132 0.16
43 288 0.34
44 206 0.25
45 101 0.12
46 4 0.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
Found at i:119056509 original size:249 final size:253
Alignment explanation
Indices: 119055822--119056930 Score: 1874
Period size: 249 Copynumber: 4.3 Consensus size: 253
119055812 AGAATCAGTG
* *
119055822 AATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCC
1 AATTTACAAGCCTT-AACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
119055886 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTA-GGTAACAGAC
65 CTAAGCAGTAGGGAAACAGAT-----ACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
119055950 TGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCC
125 TGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCC
119056015 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
190 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTT-A-CCCCTAAGCAGTAGGGTAACAAGCC
119056080 A
253 A
119056081 AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCC
1 AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCC
119056146 TAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACT
66 TAAGCAGTAGGGAAACAGAT-----ACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACT
*
119056211 GAATTGCAGATCTTATCTCTCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCT
126 GAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCT
*
119056276 AAGCAGTAGGGAAACAGATCGAAGATGATGGGC-TT-CTCCTAAGCAGTAGGGTAACAAGCCA
191 AAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTACCCCTAAGCAGTAGGGTAACAAGCCA
119056337 AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCCC
1 AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCC
119056401 TAAGCAGTAGGGAAACAGAT-CGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTGAATT
66 TAAGCAGTAGGGAAACAGATACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTGAATT
119056465 GCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCA
131 GCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCA
119056530 GTAGGGAAACAGATCGAAGATGATGGGC-TT-CCCCTAAGCAGTAGGGTAACAAGCCA
196 GTAGGGAAACAGATCGAAGATGATGGGCTTTACCCCTAAGCAGTAGGGTAACAAGCCA
119056586 AATTTACAAGCCTTAACCCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAA-CCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
119056651 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
65 CTAAGCAGTAGGGAAACAGAT-----ACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
*
119056716 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCC
125 TGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCC
* *
119056781 TAAGCAGTAGGGAAACAGATTGAAGATGATGGCCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
190 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTT-A-CCCCTAAGCAGTAGGGTAACAAGCC
119056846 A
253 A
119056847 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAACCCCC-AAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
* * *
119056912 CTAACCAATAGGGTAACAG
65 CTAAGCAGTAGGGAAACAG
119056931 GTTGAATTTA
Statistics
Matches: 823, Mismatches: 12, Indels: 28
0.95 0.01 0.03
Matches are distributed among these distances:
249 179 0.22
250 44 0.05
251 24 0.03
255 24 0.03
256 85 0.10
257 134 0.16
258 47 0.06
259 72 0.09
260 113 0.14
261 101 0.12
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (253 bp):
AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTGAATT
GCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCA
GTAGGGAAACAGATCGAAGATGATGGGCTTTACCCCTAAGCAGTAGGGTAACAAGCCA
Found at i:119056808 original size:506 final size:509
Alignment explanation
Indices: 119055822--119056930 Score: 1967
Period size: 506 Copynumber: 2.2 Consensus size: 509
119055812 AGAATCAGTG
* *
119055822 AATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTT-AACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
119055887 TAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGTAACAGACTG
65 TAAGCAGTAGGGAAACAGAT-----ACGAAGGGTCTTAAACCCCTAATCGGTAGGTAACAGACTG
119055952 AATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTA
125 AATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTA
119056017 AGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAA
190 AGCAGTAGGGAAACAGATCGAAGATGATGGGCTTT-A-CCCCTAAGCAGTAGGGTAACAAGCCAA
119056082 ATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCT
253 ATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCT
*
119056147 AAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTG
318 AAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCG
*
119056212 AATTGCAGATCTTATCTCTCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTA
383 AATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTA
* *
119056277 AGCAGTAGGGAAACAGATCGAAGATGATGGGC-TT-CTCCTAAGCAGTAGGGTAACAAGCCA
448 AGCAGTAGGGAAACAGATCGAAGATGATGGCCTTTACCCCTAAGCAGTAGGGTAACAAGCCA
119056337 AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCT
1 AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCT
119056402 AAGCAGTAGGGAAACAGAT-CGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACTGAATTG
66 AAGCAGTAGGGAAACAGATACGAAGGGTCTTAAACCCCTAATCGGTA-GGTAACAGACTGAATTG
119056466 CAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
130 CAGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCAG
119056531 TAGGGAAACAGATCGAAGATGATGGGC-TT-CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACA
195 TAGGGAAACAGATCGAAGATGATGGGCTTTACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACA
119056594 AGCCTTAACCCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAG
260 AGCCTTAA-CCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAG
119056659 TAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGC
324 TAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGC
119056724 AGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGT
389 AGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGT
*
119056789 AGGGAAACAGATTGAAGATGATGGCCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
454 AGGGAAACAGATCGAAGATGATGGCCTTT-A-CCCCTAAGCAGTAGGGTAACAAGCCA
119056847 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAACCCCC-AAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCC
* * *
119056912 CTAACCAATAGGGTAACAG
64 CTAAGCAGTAGGGAAACAG
119056931 GTTGAATTTA
Statistics
Matches: 576, Mismatches: 10, Indels: 19
0.95 0.02 0.03
Matches are distributed among these distances:
505 42 0.07
506 208 0.36
507 2 0.00
508 29 0.05
509 109 0.19
510 46 0.08
511 39 0.07
512 19 0.03
514 69 0.12
515 13 0.02
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (509 bp):
AATTTACAAGCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCT
AAGCAGTAGGGAAACAGATACGAAGGGTCTTAAACCCCTAATCGGTAGGTAACAGACTGAATTGC
AGATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGT
AGGGAAACAGATCGAAGATGATGGGCTTTACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAA
GCCTTAACCCCCAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
GGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGCAG
ATCTTATCTCCCTAAGCAGTAGGGAAAGAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCGAAGATGATGGCCTTTACCCCTAAGCAGTAGGGTAACAAGCCA
Found at i:119057372 original size:40 final size:41
Alignment explanation
Indices: 119057319--119057426 Score: 130
Period size: 44 Copynumber: 2.6 Consensus size: 41
119057309 TCTCTCTGAA
119057319 GTTG-CAGTAGAGCAGATCAAA-ACAGATTTGGCGTCTCTGT
1 GTTGACAG-AGAGCAGATCAAAGACAGATTTGGCGTCTCTGT
119057359 GTTGACAGAGAGCAGATCAAAGATGACAGATTTGGCGTCTCTGT
1 GTTGACAGAGAGCAGATC-AA-A-GACAGATTTGGCGTCTCTGT
* * *
119057403 ATTAGACGGGGAGCAGATCAAAGA
1 GTT-GACAGAGAGCAGATCAAAGA
119057427 TAGCAAATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
40 14 0.24
41 5 0.08
42 3 0.05
43 1 0.02
44 23 0.39
45 13 0.22
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (41 bp):
GTTGACAGAGAGCAGATCAAAGACAGATTTGGCGTCTCTGT
Found at i:119057396 original size:44 final size:45
Alignment explanation
Indices: 119057340--119057427 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 45
119057330 GCAGATCAAA
*
119057340 ACAGATTTGGCGTCTCTGTGTT-GACAGAGAGCAGATCAAAGATG
1 ACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCAAAGATG
* *
119057384 ACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGAT
1 ACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCAAAGAT
119057428 AGCAAATATC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 21 0.52
45 19 0.47
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (45 bp):
ACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCAAAGATG
Found at i:119058879 original size:3 final size:3
Alignment explanation
Indices: 119058786--119058863 Score: 79
Period size: 3 Copynumber: 26.0 Consensus size: 3
119058776 ATTTATTTAC
119058786 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATGT ATT -TT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
** * * *
119058830 ATT ACC ATT AATT ATT ATT ACT ACT ACT ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
119058864 TTGTTAGCAT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
2 4 0.06
3 56 0.85
4 6 0.09
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:119058973 original size:3 final size:3
Alignment explanation
Indices: 119058965--119059082 Score: 100
Period size: 3 Copynumber: 39.7 Consensus size: 3
119058955 AGTATTTTCC
* * * *
119058965 ATT ATT ATT ATT ATT ATC ACT ACT ATC ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * *
119059012 ACG A-T ACCTCT -TT ATT ATT ATT ACT ATT -GT ATT ATT ATC ATT ATT
1 ATT ATT A--T-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119059057 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
119059083 ATTTCCCTTT
Statistics
Matches: 93, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
2 5 0.05
3 87 0.94
6 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:119059098 original size:68 final size:68
Alignment explanation
Indices: 119058972--119059115 Score: 170
Period size: 68 Copynumber: 2.1 Consensus size: 68
119058962 TCCATTATTA
119058972 TTATTATTATCACTACTATCATTATTATTATTATTATATTACGATACCTCTTTATTA-TTATTAC
1 TTATTATTATCACTACTATCATTATTATTATTATTATATTACGATACCTCTTTATTATTTATTA-
119059036 TAT-
65 TATG
* * * * * *
119059039 TGTATTATTATCATTATTATTATTATTATTATTATTATTATTA-TATTTCC-CTTTTTTATTTAT
1 T-TATTATTATCACTACTATCATTATTATTATTATTA-TATTACGA-TACCTCTTTATTATTTAT
119059102 TATATG
63 TATATG
119059108 TTATTATT
1 TTATTATT
119059116 TTTTACATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
67 1 0.02
68 50 0.76
69 15 0.23
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (68 bp):
TTATTATTATCACTACTATCATTATTATTATTATTATATTACGATACCTCTTTATTATTTATTAT
ATG
Found at i:119059212 original size:26 final size:26
Alignment explanation
Indices: 119059156--119059212 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
119059146 TTTTAGCACA
*
119059156 TTTATTTTATTTATTTATCATTTACT
1 TTTATTTTATTTATTTATCATCTACT
*
119059182 CTTATTATTA-TTATTTCATCATCTA-T
1 TTTATT-TTATTTATTT-ATCATCTACT
119059208 TTTAT
1 TTTAT
119059213 CTATAGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTATTTTATTTATTTATCATCTACT
Found at i:119064156 original size:42 final size:41
Alignment explanation
Indices: 119064109--119064199 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 41
119064099 CGTGTAATTA
119064109 AAAAATATGATATAATTA-ACCTAAACTTAACAAAATAAAAAT
1 AAAAATATGA-ATAATTAGACCTAAACTTAA-AAAATAAAAAT
* * * **
119064151 AAAAATATTAATAGTTAGACCTAAATTTAAAATCTAAAAAT
1 AAAAATATGAATAATTAGACCTAAACTTAAAAAATAAAAAT
*
119064192 ATAAATAT
1 AAAAATAT
119064200 AAAGACTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 22 0.52
42 20 0.48
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (41 bp):
AAAAATATGAATAATTAGACCTAAACTTAAAAAATAAAAAT
Found at i:119073605 original size:3 final size:3
Alignment explanation
Indices: 119073597--119073668 Score: 101
Period size: 3 Copynumber: 24.3 Consensus size: 3
119073587 AGTAGATTTA
* * * *
119073597 ATT ATT ATT ATT AGT AGT ATT ATT ATA ACT A-T ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119073644 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
119073669 AATAAATTAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 2 0.03
3 61 0.97
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:119073891 original size:15 final size:17
Alignment explanation
Indices: 119073854--119073892 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
119073844 TATGAGATTT
119073854 TTGT-ATAATGAACAAA
1 TTGTAATAATGAACAAA
119073870 TTG-AATAATG-AC-AA
1 TTGTAATAATGAACAAA
119073884 TTGTAATAA
1 TTGTAATAA
119073893 AAATATTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.24
15 7 0.33
16 9 0.43
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (17 bp):
TTGTAATAATGAACAAA
Found at i:119074112 original size:25 final size:23
Alignment explanation
Indices: 119074084--119074137 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
119074074 GTACATTTGT
*
119074084 ATATATATGATTAAATAT-TTAATA
1 ATATATA-GAATAAATATATT-ATA
*
119074108 GATATTTAGAATAAATATATTATA
1 -ATATATAGAATAAATATATTATA
119074132 ATATAT
1 ATATAT
119074138 GTTAAGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 5 0.20
24 12 0.48
25 8 0.32
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (23 bp):
ATATATAGAATAAATATATTATA
Found at i:119075036 original size:44 final size:44
Alignment explanation
Indices: 119074956--119075045 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 44
119074946 TGTTCAGGGA
* * *
119074956 TACTTCGACCTTAAGTCGATGAGACACTATAAGTGTCGTGCTGT
1 TACTTCAACCTTAAGTCGATGAGACACTATAAGTGTCATACTGT
* * **
119075000 TACTTCAACTTTAAGTCGATGAGGCACCT-TGTGTGTCATACTGT
1 TACTTCAACCTTAAGTCGATGAGACA-CTATAAGTGTCATACTGT
119075044 TA
1 TA
119075046 TTGTTACTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (44 bp):
TACTTCAACCTTAAGTCGATGAGACACTATAAGTGTCATACTGT
Found at i:119075615 original size:18 final size:18
Alignment explanation
Indices: 119075575--119075619 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
119075565 GGTTTAAACA
119075575 ATTACTGAA-AGACTAAT
1 ATTACTGAATAGACTAAT
*
119075592 ATTACTGAATA-ACTGAT
1 ATTACTGAATAGACTAAT
119075609 GATTACTGAAT
1 -ATTACTGAAT
119075620 GATTATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (18 bp):
ATTACTGAATAGACTAAT
Found at i:119080163 original size:30 final size:30
Alignment explanation
Indices: 119080128--119080189 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
119080118 TGATACGATT
119080128 TTACTTTAATTATATGCTTCATTTAACGCC
1 TTACTTTAATTATATGCTTCATTTAACGCC
119080158 TTACTTTAATTATATGCTTCATTTAACGCC
1 TTACTTTAATTATATGCTTCATTTAACGCC
119080188 TT
1 TT
119080190 CTACATATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (30 bp):
TTACTTTAATTATATGCTTCATTTAACGCC
Found at i:119082468 original size:31 final size:29
Alignment explanation
Indices: 119082404--119082472 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
119082394 ACGTTAATAT
* *
119082404 AAGTGACTAAAATGTAACATGTCAAACAT
1 AAGTGACTAAAATGTAACAGGTCAAACAA
119082433 AAGTGACTAAAATGTAATCTAAGGT-AAACAA
1 AAGTGACTAAAATGTAA-C--AGGTCAAACAA
119082464 AAGTGACTA
1 AAGTGACTA
119082473 TTTTGACAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 17 0.49
30 1 0.03
31 14 0.40
32 3 0.09
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (29 bp):
AAGTGACTAAAATGTAACAGGTCAAACAA
Found at i:119100659 original size:46 final size:46
Alignment explanation
Indices: 119100606--119100698 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
119100596 GCCATTCAAG
119100606 TCTACAATAATGAAAAAGGATTGTATGAAATAACAAATCAAATTTT
1 TCTACAATAATGAAAAAGGATTGTATGAAATAACAAATCAAATTTT
*
119100652 TCTACAATAATGAAAAAGGATTGTATGAAATAACAAATCAGATTTT
1 TCTACAATAATGAAAAAGGATTGTATGAAATAACAAATCAAATTTT
119100698 T
1 T
119100699 ACTCTTAAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (46 bp):
TCTACAATAATGAAAAAGGATTGTATGAAATAACAAATCAAATTTT
Found at i:119108281 original size:24 final size:24
Alignment explanation
Indices: 119108254--119108320 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
119108244 AGATATATAT
119108254 ATATATATATAAAATGTATACATA
1 ATATATATATAAAATGTATACATA
* * *
119108278 ATATA-ATATTAAAATATTTACATG
1 ATATATATA-TAAAATGTATACATA
* *
119108302 GTATATACATAATAATGTA
1 ATATATATATAA-AATGTA
119108321 AAAAATAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
23 3 0.09
24 24 0.73
25 6 0.18
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (24 bp):
ATATATATATAAAATGTATACATA
Found at i:119108888 original size:39 final size:39
Alignment explanation
Indices: 119108819--119108957 Score: 185
Period size: 39 Copynumber: 3.6 Consensus size: 39
119108809 CCAATGCTAC
* * *
119108819 TTTGTTTTATTATTAATCAAAAAC-A-CTCCCCATGCTAT
1 TTTGTTTTATTATTAAT-TAAAACTATTTCCCCATACTAT
*
119108857 TTTGTTTTATTGTTAATTAAAACTATTTCCCCATACTAT
1 TTTGTTTTATTATTAATTAAAACTATTTCCCCATACTAT
* *
119108896 TTTGTTTTATTGTTAATTAAAACTACTTT-CTCATACTAT
1 TTTGTTTTATTATTAATTAAAACTA-TTTCCCCATACTAT
119108935 TTTGTTTTATTATTAATTAAAAC
1 TTTGTTTTATTATTAATTAAAAC
119108958 CATACTTTAT
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
37 5 0.05
38 17 0.18
39 67 0.73
40 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.50
Consensus pattern (39 bp):
TTTGTTTTATTATTAATTAAAACTATTTCCCCATACTAT
Found at i:119110255 original size:45 final size:45
Alignment explanation
Indices: 119110191--119110276 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
119110181 CAATATCTGC
* *
119110191 TATCTTTGATCTGCCCCCCGTCTACTACAGAGACGCCAAATCTAT
1 TATCTTCGATCTGCCCCCCGTCTAATACAGAGACGCCAAATCTAT
*
119110236 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
1 TATCTTCGATCTGCCCCCCGTCTAATACAGAGACGCCAAAT
119110277 TTGCTTCTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.28
Consensus pattern (45 bp):
TATCTTCGATCTGCCCCCCGTCTAATACAGAGACGCCAAATCTAT
Found at i:119111017 original size:418 final size:416
Alignment explanation
Indices: 119110370--119111550 Score: 1712
Period size: 418 Copynumber: 2.8 Consensus size: 416
119110360 AAATCTGTTT
* * * * * * * *
119110370 CTTCGATTTATTCCCTGACAATACAGAGATGCCAAATCATTTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGAAAACAC
* * * * * * * *
119110435 GTGAAAGCCAAATCAACTATGA--TTCAATTTGCTCCTTGTAAGCATAAGG-ATGCCAAACCATC
66 GTGAAAGCCAAATCAGCTAT-ATCTTCGATCTGCTCCCTGCAAACACAAGGAAAGCCAAACCATC
* * **
119110497 CTGGATCCGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTGTTTGCTCTCCATCAAAGT
130 TTGGATCCGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTTTGCTCTCCATCAAAGT
*
119110562 GAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTT
195 GAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTT
* *
119110627 CATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAGAGAG
260 CATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAG
119110692 ATAAGATCTGTCATCTTGGATCTGCTTCAGCGTAAACATCTG-AGGTAAGATCTGCTATGTGTCT
325 ATAAGATCTGTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCT
119110756 GCCTTCCATCAAAGTGGAAATGCCAGA
390 GCCTTCCATCAAAGTGGAAATGCCAGA
*
119110783 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGAAAACAC
* * * ***
119110848 -TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATC-TGT
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTG-CAAACACA-AG-GA-AAG-CCAAAC
* *
119110911 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTTTGC-CTTCCATC
126 CATCTTGGATCCGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTTTGCTC-TCCATC
* * * *
119110975 AAAGTGGAA-ATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGAT
190 AAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
119111039 TTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAC
254 TTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAC
* *
119111104 AGAGAGATAAGATCTGTCATTTTGGATCTGCTTCAGCGTAAACATTTGAAGGTAAGATCTGCTAT
319 AGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTAT
* *
119111169 GTGTCTGTCTTCCGTCAAAGTGGAAATGCCAGA
384 GTGTCTGCCTTCCATCAAAGTGGAAATGCCAGA
* *
119111202 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGAAAACAC
* * * * * *
119111267 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGAATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCAAACACAAGGAAAGCCAAACCATCT
* * *
119111332 TGGATCCGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTCTCTATCAAAGTG
131 TGGATCCGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTTTGCTCTCCATCAAAGTG
* *
119111397 AAGATACCAAACTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
196 AAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
* * *
119111462 ATCGTAAACACGTGAAAGCCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGA
261 ATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGA
* *
119111527 TAAAATCTGTCATCTTAGATCTGC
326 TAAGATCTGTCATCTTGGATCTGC
119111551 CCAGATGAAG
Statistics
Matches: 681, Mismatches: 72, Indels: 27
0.87 0.09 0.03
Matches are distributed among these distances:
411 1 0.00
412 18 0.03
413 69 0.10
414 3 0.00
415 6 0.01
416 204 0.30
417 4 0.01
418 224 0.33
419 118 0.17
420 34 0.05
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (416 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGAAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCAAACACAAGGAAAGCCAAACCATCT
TGGATCCGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTTTGCTCTCCATCAAAGTG
AAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
ATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGA
TAAGATCTGTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTG
CCTTCCATCAAAGTGGAAATGCCAGA
Found at i:119111163 original size:210 final size:209
Alignment explanation
Indices: 119110370--119111550 Score: 1570
Period size: 210 Copynumber: 5.7 Consensus size: 209
119110360 AAATCTGTTT
* * * * * * * *
119110370 CTTCGATTTATTCCCTGACAATACAGAGATGCCAAATCATTTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * **
119110435 GTGAAAGCCAAATCAACTATGA--TTCAATTTGCTCCTTGTAAGCATA-AG-GATGCCAA-A-C-
66 GTGAAAGCCAAATCAGCTAT-ATCTTCGATCTGCTCCCTG-CCGAATACAGAGA-GATAAGATCT
* * * * ** *
119110493 --CATCCTGGATCCGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTGTTTGCTCTCCAT
128 GTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCT-TCCAT
*
119110556 CAAAGT-GAAGATGCCAAA
192 CAAAGTGGAA-ATGCCAGA
* * *
119110574 CTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
119110639 GTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
119110704 ATCTTGGATCTGCTTCAGCGTAAACATCTG-AGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTG-CTTCCATCAA
119110768 AGTGGAAATGCCAGA
195 AGTGGAAATGCCAGA
*
119110783 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
119110848 -TGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
*
119110912 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTTTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTG-CTTCCATCAA
119110977 AGTGGAAATGCCAGA
195 AGTGGAAATGCCAGA
* *
119110992 CTTCAATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
119111057 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
* * *
119111122 ATTTTGGATCTGCTTCAGCGTAAACATTTGAAGGTAAGATCTGCTATGTGTCTGTCTTCCGTCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTG-CTTCCATCAA
119111187 AGTGGAAATGCCAGA
195 AGTGGAAATGCCAGA
* *
119111202 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * * * ***
119111267 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG-TAAACACA-AG-GA-ATG-CCAAAC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATC-TGT
* * * *
119111327 CATCTTGGATCCGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTCTCTATCA
130 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCT-TCCATCA
* *
119111392 AAGT-GAAGATACCAAA
194 AAGTGGAA-ATGCCAGA
**
119111408 CTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * *
119111473 GTGAAAGCCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAAATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
*
119111538 ATCTTAGATCTGC
131 ATCTTGGATCTGC
119111551 CCAGATGAAG
Statistics
Matches: 869, Mismatches: 87, Indels: 36
0.88 0.09 0.04
Matches are distributed among these distances:
203 1 0.00
204 77 0.09
205 23 0.03
206 164 0.19
207 8 0.01
208 97 0.11
209 218 0.25
210 280 0.32
211 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (209 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCTTCCATCAAA
GTGGAAATGCCAGA
Found at i:119118474 original size:46 final size:46
Alignment explanation
Indices: 119118310--119118483 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
119118300 GGTTGAGCAT
*
119118310 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
119118355 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
119118400 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
119118448 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
119118484 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.25
46 34 0.31
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:119123844 original size:13 final size:15
Alignment explanation
Indices: 119123814--119123844 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
119123804 TTCCAGATTT
119123814 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
*
119123829 TCTTTTCTCCCTCTC
1 TCTTTTCTACCTCTC
119123844 T
1 T
119123845 GGAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.42, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:119123930 original size:15 final size:14
Alignment explanation
Indices: 119123888--119123937 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
119123878 ATAACCTTGA
*
119123888 ATGCAAATGATGTG
1 ATGCAAATGATGAG
119123902 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
119123917 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
119123931 ATGCAAA
1 ATGCAAA
119123938 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:119128400 original size:39 final size:37
Alignment explanation
Indices: 119128312--119128421 Score: 148
Period size: 39 Copynumber: 2.9 Consensus size: 37
119128302 ATTCCACTCC
* *
119128312 CCTCATGCTACTTTGTTTTATTATTAATAAAAAACACT
1 CCTCATGCTATTTTGTTTTATTATTAAT-TAAAACACT
* *
119128350 CCCCATGCTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCTCATGCTATTTTGTTTTATTATTAATTAAAAC-AC-T
*
119128389 CCTCATACTATTTTGTTTTATTATTAATTAAAA
1 CCTCATGCTATTTTGTTTTATTATTAATTAAAA
119128422 TCATACTTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
37 5 0.08
38 27 0.43
39 31 0.49
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.47
Consensus pattern (37 bp):
CCTCATGCTATTTTGTTTTATTATTAATTAAAACACT
Found at i:119128888 original size:4 final size:4
Alignment explanation
Indices: 119128879--119128905 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
119128869 AAAGATCAAA
119128879 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
119128906 AATAAGGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:119129021 original size:21 final size:21
Alignment explanation
Indices: 119128982--119129021 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
119128972 AACCCCCTCT
** *
119128982 AATACAATCTCTTCTCTCCAA
1 AATACAATCGATTCCCTCCAA
119129003 AATACAATCGATTCCCTCC
1 AATACAATCGATTCCCTCC
119129022 CTCATGGCAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.30
Consensus pattern (21 bp):
AATACAATCGATTCCCTCCAA
Found at i:119134867 original size:24 final size:26
Alignment explanation
Indices: 119134817--119134867 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
119134807 AATAGAATTT
*
119134817 TTAATAAAAGTAATTAAAATGATTAAA
1 TTAATAAAAG-AATTAAAATGACTAAA
119134844 TTAATAAAA-AATT-AAATGACTAAA
1 TTAATAAAAGAATTAAAATGACTAAA
119134868 ATAACAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 10 0.43
25 4 0.17
27 9 0.39
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (26 bp):
TTAATAAAAGAATTAAAATGACTAAA
Found at i:119146807 original size:23 final size:21
Alignment explanation
Indices: 119146781--119146825 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
119146771 AAAGAAATTT
*
119146781 TAATTAGTATTTTTATTAAAAAA
1 TAATT-GTACTTTT-TTAAAAAA
*
119146804 TAATTTTACTTTTTTAAAAAA
1 TAATTGTACTTTTTTAAAAAA
119146825 T
1 T
119146826 TAATAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 6 0.30
23 5 0.25
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TAATTGTACTTTTTTAAAAAA
Done.