Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 410 of 427
Found at i:119148908 original size:20 final size:20
Alignment explanation
Indices: 119148885--119148934 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
119148875 AAATCCAAAT
119148885 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
* *
119148905 TAAAAT-CATGAAATTTAGGA
1 TAAAATAC-TAAAATTCAGGA
119148925 TAAGAATACT
1 TAA-AATACT
119148935 GATGTGGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 1 0.04
20 19 0.76
21 4 0.16
22 1 0.04
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:119149915 original size:26 final size:25
Alignment explanation
Indices: 119149856--119149916 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
119149846 TAAGAATAAG
119149856 TAATATT-AATTAATTAATATTAAA
1 TAATATTAAATTAATTAATATTAAA
* *
119149880 TATTATTTAAATTAATT-ATCAGTTAAT
1 TAATA-TTAAATTAATTAAT-A-TTAAA
119149907 TAATATTAAA
1 TAATATTAAA
119149917 ATTATACATC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 4 0.13
25 4 0.13
26 14 0.47
27 8 0.27
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
TAATATTAAATTAATTAATATTAAA
Found at i:119157766 original size:19 final size:19
Alignment explanation
Indices: 119157744--119157784 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
119157734 ATGAACTCTG
119157744 AATATAAAG-ATAAAATTAA
1 AATATAAAGTATAAAA-TAA
*
119157763 AATATATAGTATAAAATAA
1 AATATAAAGTATAAAATAA
119157782 AAT
1 AAT
119157785 TTAAGAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
AATATAAAGTATAAAATAA
Found at i:119165509 original size:3 final size:3
Alignment explanation
Indices: 119165501--119165537 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
119165491 TTTATCTCTC
119165501 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
119165538 ATCCAATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:119168506 original size:30 final size:29
Alignment explanation
Indices: 119168470--119168528 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
119168460 ACTTAACAAG
119168470 CAAATGT-TTCTAAAATAATAACAAAATTAA
1 CAAATGTCTT-TAAAATAATAA-AAAATTAA
119168500 CAAATGTCTTTAAAATAATAAAAAATTAA
1 CAAATGTCTTTAAAATAATAAAAAATTAA
119168529 TAATAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 8 0.29
30 18 0.64
31 2 0.07
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (29 bp):
CAAATGTCTTTAAAATAATAAAAAATTAA
Found at i:119168586 original size:22 final size:22
Alignment explanation
Indices: 119168561--119168603 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
119168551 TATCTAAATA
119168561 ATAACAACAAAATAGTAGCAAT
1 ATAACAACAAAATAGTAGCAAT
* **
119168583 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
119168604 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAT
Found at i:119168607 original size:11 final size:11
Alignment explanation
Indices: 119168568--119168608 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
119168558 ATAATAACAA
119168568 CAAAATAGTAG
1 CAAAATAGTAG
* *
119168579 CAATATAATAG
1 CAAAATAGTAG
*
119168590 TAAAATAGTAG
1 CAAAATAGTAG
119168601 CAAAATAG
1 CAAAATAG
119168609 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:119168616 original size:22 final size:22
Alignment explanation
Indices: 119168569--119168618 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
119168559 TAATAACAAC
* *
119168569 AAAATAGTAGCAATATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
119168591 AAAATAGTAGCAAAATAGAGAG-
1 AAAATAGTAGCAAAATA-AGAGT
119168613 AAAATA
1 AAAATA
119168619 ATAAGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.60, C:0.04, G:0.16, T:0.20
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:119169711 original size:13 final size:14
Alignment explanation
Indices: 119169686--119169717 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
119169676 ATTAGAGTAC
119169686 ATTT-GATATTTTT
1 ATTTAGATATTTTT
119169699 ATTTAGATATTTTT
1 ATTTAGATATTTTT
119169713 ATTTA
1 ATTTA
119169718 ATTAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (14 bp):
ATTTAGATATTTTT
Found at i:119174070 original size:33 final size:35
Alignment explanation
Indices: 119173975--119174071 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
119173965 TTAATATTTT
*
119173975 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
119174010 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
119174043 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
119174072 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:119174695 original size:16 final size:17
Alignment explanation
Indices: 119174664--119174696 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
119174654 TTTTTAAATT
119174664 GAAATAATGAAAAGAGA
1 GAAATAATGAAAAGAGA
*
119174681 GAAATTATG-AAAGAGA
1 GAAATAATGAAAAGAGA
119174697 TGCATGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (17 bp):
GAAATAATGAAAAGAGA
Found at i:119191768 original size:21 final size:21
Alignment explanation
Indices: 119191714--119191772 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 21
119191704 AATTTACATG
*
119191714 TTTTTTAAA-ATTTATTTTTA
1 TTTTTTAAATATTTACTTTTA
119191734 TTTTCTTGAAAAATATTTACTTTTA
1 TTTT-TT---AAATATTTACTTTTA
119191759 TTTTTTAAATATTT
1 TTTTTTAAATATTT
119191773 TTAATGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
20 4 0.12
21 10 0.30
24 5 0.15
25 14 0.42
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTTTAAATATTTACTTTTA
Found at i:119194261 original size:45 final size:50
Alignment explanation
Indices: 119194119--119194304 Score: 166
Period size: 53 Copynumber: 3.7 Consensus size: 50
119194109 ACGCATCACA
* ** * * *
119194119 CACCGAAGCCATAGCCTTGCCATGGTCTTACACGG-TTCACA-TATCA-T
1 CACCGATGCCATAGCCCAGCTATGGTCTTAAACGGAGTCACATTATCATT
* * * * *
119194166 -ACCGAAGCCATATCCCAGAC-ATAGTCTTATACGGAATCACATTATCACATT
1 CACCGATGCCATAGCCCAG-CTATGGTCTTAAACGGAGTCACATTAT--CATT
* *
119194217 ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTATCACATT
1 -CACCGATGCCATAGCCCAGCTATGGTCTTAAACGGAGTCACATTAT--CATT
119194270 CACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 CACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
119194305 GCACACTTGT
Statistics
Matches: 118, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
46 27 0.23
47 6 0.05
48 3 0.03
50 2 0.02
51 1 0.01
52 34 0.29
53 45 0.38
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (50 bp):
CACCGATGCCATAGCCCAGCTATGGTCTTAAACGGAGTCACATTATCATT
Found at i:119194297 original size:52 final size:53
Alignment explanation
Indices: 119194166--119194304 Score: 201
Period size: 53 Copynumber: 2.6 Consensus size: 53
119194156 CACATATCAT
* * * *
119194166 ACCGAAGCCATATCCCAGAC-ATAGTCTTATACGGAATCACATTATCACATTAT
1 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTAC
*
119194219 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTATCACATT-C
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
*
119194271 ACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGG
119194305 GCACACTTGT
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
52 34 0.43
53 45 0.57
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
Found at i:119200088 original size:29 final size:29
Alignment explanation
Indices: 119200026--119200098 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
119200016 ATACATTACC
*
119200026 TTTTTTTTTTCTTTCTTCTTCTTATTATT
1 TTTTTTTTTTCTTTCCTCTTCTTATTATT
* *
119200055 CTTTTTTTTTCTTCTCCT-TTCTCTCTT-TT
1 TTTTTTTTTTCTT-TCCTCTTCT-TATTATT
*
119200084 TTTTTTCTTTCTTTC
1 TTTTTTTTTTCTTTC
119200099 GGTGTGGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
28 2 0.05
29 29 0.78
30 6 0.16
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (29 bp):
TTTTTTTTTTCTTTCCTCTTCTTATTATT
Found at i:119200420 original size:24 final size:25
Alignment explanation
Indices: 119200390--119200444 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
119200380 ATATATATTT
*
119200390 AAATATTTTAATAAAAATA-AAAAA
1 AAATATTTTAATAAAAAAACAAAAA
* *
119200414 TAATATTTTATTAAAAAAACAAAAA
1 AAATATTTTAATAAAAAAACAAAAA
119200439 AAATAT
1 AAATAT
119200445 AAAATAATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (25 bp):
AAATATTTTAATAAAAAAACAAAAA
Found at i:119201634 original size:17 final size:19
Alignment explanation
Indices: 119201609--119201646 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
119201599 TATTTATGTC
*
119201609 TTTTAAAATT-TTAAAAAA
1 TTTTAAAATTAATAAAAAA
119201627 TTTT-AAATTAATAAAAAA
1 TTTTAAAATTAATAAAAAA
119201645 TT
1 TT
119201647 AAATTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTTAAAATTAATAAAAAA
Found at i:119201693 original size:29 final size:30
Alignment explanation
Indices: 119201639--119201696 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
119201629 TTAAATTAAT
*
119201639 AAAAAATTAAATTTTGATCTTCTAAAAATA
1 AAAAAATTAAATTTTAATCTTCTAAAAATA
*
119201669 AAAAAATTTAA-TTTAATTCTT-TAAAAAT
1 AAAAAATTAAATTTTAA-TCTTCTAAAAAT
119201697 TTAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (30 bp):
AAAAAATTAAATTTTAATCTTCTAAAAATA
Found at i:119202748 original size:2 final size:2
Alignment explanation
Indices: 119202741--119202779 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
119202731 GAAAACGGTA
119202741 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119202780 GCTTAAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:119203317 original size:17 final size:16
Alignment explanation
Indices: 119203281--119203322 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
119203271 TAAAATAATA
119203281 AAAATAATAATTCTTT
1 AAAATAATAATTCTTT
119203297 AAAATAATAATT-TTT
1 AAAATAATAATTCTTT
*
119203312 AGAA-AATAATT
1 AAAATAATAATT
119203323 ATGAATGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 7 0.28
15 6 0.24
16 12 0.48
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (16 bp):
AAAATAATAATTCTTT
Found at i:119205460 original size:33 final size:33
Alignment explanation
Indices: 119205423--119205521 Score: 84
Period size: 33 Copynumber: 3.2 Consensus size: 33
119205413 GCATGAAACC
119205423 ATTGTCATTTTGCAGTTCCTGCAAATTATCTTT
1 ATTGTCATTTTGCAGTTCCTGCAAATTATCTTT
* * * * * **
119205456 ATTGT-TTTTTGGAAGTT--GGC--ATGAAC-CC
1 ATTGTCATTTT-GCAGTTCCTGCAAATTATCTTT
119205484 ATTGTCATTTTGCAGTTCCTGCAAATTATCTTT
1 ATTGTCATTTTGCAGTTCCTGCAAATTATCTTT
119205517 ATTGT
1 ATTGT
119205522 TTTCCTACCA
Statistics
Matches: 45, Mismatches: 14, Indels: 14
0.62 0.19 0.19
Matches are distributed among these distances:
28 10 0.22
29 8 0.18
30 2 0.04
31 2 0.04
32 8 0.18
33 15 0.33
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.46
Consensus pattern (33 bp):
ATTGTCATTTTGCAGTTCCTGCAAATTATCTTT
Found at i:119205497 original size:61 final size:61
Alignment explanation
Indices: 119205397--119205524 Score: 238
Period size: 61 Copynumber: 2.1 Consensus size: 61
119205387 TGATTCGGAA
119205397 GTTTATTTGGAAGTTGGCATGAAACCATTGTCATTTTGCAGTTCCTGCAAATTATCTTTATT
1 GTTT-TTTGGAAGTTGGCATGAAACCATTGTCATTTTGCAGTTCCTGCAAATTATCTTTATT
*
119205459 GTTTTTTGGAAGTTGGCATGAACCCATTGTCATTTTGCAGTTCCTGCAAATTATCTTTATT
1 GTTTTTTGGAAGTTGGCATGAAACCATTGTCATTTTGCAGTTCCTGCAAATTATCTTTATT
119205520 GTTTT
1 GTTTT
119205525 CCTACCATGT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 61 0.94
62 4 0.06
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (61 bp):
GTTTTTTGGAAGTTGGCATGAAACCATTGTCATTTTGCAGTTCCTGCAAATTATCTTTATT
Found at i:119210730 original size:25 final size:25
Alignment explanation
Indices: 119210667--119210730 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
119210657 CCAAATTTTC
*
119210667 TATAATTA-GTTTAAAATTTAAAATT
1 TATAATTATGTTT-AAATTCAAAATT
*
119210692 TATTATATAT-TTTAAATTC-AAATAT
1 TATAAT-TATGTTTAAATTCAAAAT-T
119210717 TATAATTATGTTTA
1 TATAATTATGTTTA
119210731 TTTTATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
24 7 0.22
25 20 0.62
26 5 0.16
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (25 bp):
TATAATTATGTTTAAATTCAAAATT
Found at i:119220384 original size:14 final size:14
Alignment explanation
Indices: 119220365--119220393 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
119220355 TGATAATAAG
119220365 TTTATTCACTATCA
1 TTTATTCACTATCA
119220379 TTTATTCACTATCA
1 TTTATTCACTATCA
119220393 T
1 T
119220394 GTACAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTATTCACTATCA
Found at i:119221400 original size:21 final size:21
Alignment explanation
Indices: 119221337--119221402 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
119221327 TCTTTTATTC
* * *
119221337 ATTATAACTATTATATTATATC
1 ATTATAATTATTATATTTTA-A
*
119221359 ATTATTATTATTATATTTTAA
1 ATTATAATTATTATATTTTAA
119221380 ATTATAATTATTAT-TTCTTAA
1 ATTATAATTATTATATT-TTAA
119221401 AT
1 AT
119221403 ATTAAGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
20 2 0.05
21 19 0.50
22 17 0.45
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATAATTATTATATTTTAA
Found at i:119222367 original size:28 final size:27
Alignment explanation
Indices: 119222316--119222368 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
119222306 GGTTTAATTT
*
119222316 TTTTGGTTTCAAATTTTGGTTTTGAGG
1 TTTTGGTTTCAAATTTTCGTTTTGAGG
119222343 TTTTGGATTTCAAA-TTTCGTATTTGA
1 TTTTGG-TTTCAAATTTTCGT-TTTGA
119222369 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.19, C:0.06, G:0.21, T:0.55
Consensus pattern (27 bp):
TTTTGGTTTCAAATTTTCGTTTTGAGG
Found at i:119222374 original size:28 final size:27
Alignment explanation
Indices: 119222314--119222374 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
119222304 TAGGTTTAAT
*
119222314 TTTTTTGGTTTCAAATTTTGGTTTTGA
1 TTTTTTGGTTTCAAATTTTCGTTTTGA
**
119222341 GGTTTTGGATTTCAAA-TTTCGTATTTGA
1 TTTTTTGG-TTTCAAATTTTCGT-TTTGA
119222369 TTTTTT
1 TTTTTT
119222375 TTTATGTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
27 11 0.41
28 16 0.59
ACGTcount: A:0.16, C:0.05, G:0.18, T:0.61
Consensus pattern (27 bp):
TTTTTTGGTTTCAAATTTTCGTTTTGA
Found at i:119222574 original size:15 final size:17
Alignment explanation
Indices: 119222551--119222585 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
119222541 ATTCTCCCTT
119222551 AAATAATTAA-ATTTTA
1 AAATAATTAAGATTTTA
119222567 AAAT-ATTAAGATTTTA
1 AAATAATTAAGATTTTA
119222583 AAA
1 AAA
119222586 AACTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
AAATAATTAAGATTTTA
Found at i:119222599 original size:26 final size:24
Alignment explanation
Indices: 119222559--119222622 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 24
119222549 TTAAATAATT
*
119222559 AAATTTTAAAATATTAAGATTTTAAA
1 AAATTTT-TAATATTAAGA-TTTAAA
* *
119222585 AAACTTTTTAATATTAATATTTAAT
1 AAA-TTTTTAATATTAAGATTTAAA
*
119222610 ACATTTTTAATAT
1 AAATTTTTAATAT
119222623 ATTTAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 10 0.30
25 7 0.21
26 12 0.36
27 4 0.12
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
AAATTTTTAATATTAAGATTTAAA
Found at i:119222798 original size:13 final size:13
Alignment explanation
Indices: 119222780--119222804 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119222770 TAAGTCATTG
119222780 CTCTTTTTTTTTC
1 CTCTTTTTTTTTC
119222793 CTCTTTTTTTTT
1 CTCTTTTTTTTT
119222805 GCGTATCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
CTCTTTTTTTTTC
Found at i:119229393 original size:44 final size:45
Alignment explanation
Indices: 119229301--119229434 Score: 135
Period size: 44 Copynumber: 3.0 Consensus size: 45
119229291 ACAGGACAGA
* * * *
119229301 ACAGAAATGAGCCATATAAGCCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
119229347 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
119229391 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
119229435 CAGGATATTG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
44 36 0.50
45 1 0.01
46 35 0.49
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:119236644 original size:46 final size:44
Alignment explanation
Indices: 119236585--119236699 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
119236575 ACAGGACAGA
* *
119236585 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
119236631 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
119236675 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
119236700 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:119236680 original size:44 final size:45
Alignment explanation
Indices: 119236585--119236718 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
119236575 ACAGGACAGA
* *
119236585 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
119236631 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
119236675 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
119236719 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:119245788 original size:15 final size:17
Alignment explanation
Indices: 119245765--119245799 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
119245755 ATTCTGCCTT
119245765 AAATAATTAA-ATTTTA
1 AAATAATTAAGATTTTA
119245781 AAAT-ATTAAGATTTTA
1 AAATAATTAAGATTTTA
119245797 AAA
1 AAA
119245800 AACTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
AAATAATTAAGATTTTA
Found at i:119245813 original size:26 final size:24
Alignment explanation
Indices: 119245773--119245836 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 24
119245763 TTAAATAATT
*
119245773 AAATTTTAAAATATTAAGATTTTAAA
1 AAATTTT-TAATATTAAGA-TTTAAA
* *
119245799 AAACTTTTTAATATTAATATTTAAT
1 AAA-TTTTTAATATTAAGATTTAAA
*
119245824 ACATTTTTAATAT
1 AAATTTTTAATAT
119245837 ATTTAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 10 0.30
25 7 0.21
26 12 0.36
27 4 0.12
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
AAATTTTTAATATTAAGATTTAAA
Found at i:119250413 original size:103 final size:103
Alignment explanation
Indices: 119250280--119250485 Score: 412
Period size: 103 Copynumber: 2.0 Consensus size: 103
119250270 ACCTTGTTCG
119250280 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
1 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
119250345 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
66 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
119250383 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
1 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
119250448 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
66 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
119250486 CTTAATGAGT
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (103 bp):
ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
Found at i:119251055 original size:19 final size:20
Alignment explanation
Indices: 119251031--119251075 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
119251021 ATCCAAACAC
119251031 CAGAAAAGTAAATCA-TTTT
1 CAGAAAAGTAAATCATTTTT
*
119251050 CAGAAAAGTAAATTATTTTT
1 CAGAAAAGTAAATCATTTTT
119251070 CAGAAA
1 CAGAAA
119251076 TTATTTTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (20 bp):
CAGAAAAGTAAATCATTTTT
Found at i:119251078 original size:14 final size:14
Alignment explanation
Indices: 119251059--119251096 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
119251049 TCAGAAAAGT
119251059 AAATTATTTTTCAG
1 AAATTATTTTTCAG
*
119251073 AAATTATTTTTCGG
1 AAATTATTTTTCAG
119251087 AAATTATTTT
1 AAATTATTTT
119251097 ACTGGCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (14 bp):
AAATTATTTTTCAG
Found at i:119256699 original size:19 final size:19
Alignment explanation
Indices: 119256675--119256714 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
119256665 ATTTAGTTAA
119256675 AAGGTATGAAGAGAAATTG
1 AAGGTATGAAGAGAAATTG
119256694 AAGGTATGAAGAGAAATTG
1 AAGGTATGAAGAGAAATTG
119256713 AA
1 AA
119256715 ATTCAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (19 bp):
AAGGTATGAAGAGAAATTG
Found at i:119256960 original size:2 final size:2
Alignment explanation
Indices: 119256955--119256997 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
119256945 AGACTCACAC
119256955 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
119256997 A
1 A
119256998 AATTTTAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:119258699 original size:21 final size:20
Alignment explanation
Indices: 119258671--119258713 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
119258661 AAGTGTAACC
119258671 TTTTTTATATTTTTATATAT
1 TTTTTTATATTTTTATATAT
*
119258691 TTTTATTATATTTTTTTATAT
1 TTTT-TTATATTTTTATATAT
119258712 TT
1 TT
119258714 GTTAATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTATATTTTTATATAT
Found at i:119258721 original size:10 final size:10
Alignment explanation
Indices: 119258671--119258713 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
119258661 AAGTGTAACC
119258671 TTTTT-TATA
1 TTTTTATATA
119258680 TTTTTATATA
1 TTTTTATATA
119258690 TTTTTATTATA
1 TTTTTA-TATA
*
119258701 TTTTTTTATA
1 TTTTTATATA
119258711 TTT
1 TTT
119258714 GTTAATATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
9 5 0.16
10 17 0.55
11 9 0.29
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTATATA
Found at i:119259602 original size:18 final size:17
Alignment explanation
Indices: 119259581--119259634 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 17
119259571 TTATAACTAA
119259581 TTTTATATTTTATATAAT
1 TTTTATATTTTATAT-AT
*
119259599 TTTTATACTTTTTTATAT
1 TTTTATA-TTTTATATAT
119259617 TTTATAATAATTTTATAT
1 TTT-T-AT-ATTTTATAT
119259635 TATATATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 12 0.40
19 8 0.27
20 9 0.30
21 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATATTTTATATAT
Found at i:119259629 original size:11 final size:10
Alignment explanation
Indices: 119259587--119259634 Score: 55
Period size: 9 Copynumber: 4.9 Consensus size: 10
119259577 CTAATTTTAT
119259587 ATTTTATATA
1 ATTTTATATA
119259597 ATTTT-TATA
1 ATTTTATATA
* *
119259606 CTTTTTTAT-
1 ATTTTATATA
119259615 ATTTTATAATA
1 ATTTTAT-ATA
119259626 ATTTTATAT
1 ATTTTATAT
119259635 TATATATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
9 13 0.41
10 12 0.38
11 7 0.22
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTATATA
Found at i:119261132 original size:12 final size:12
Alignment explanation
Indices: 119261115--119261139 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119261105 TAAAAAAGAC
119261115 AAAAAATAAAAT
1 AAAAAATAAAAT
119261127 AAAAAATAAAAT
1 AAAAAATAAAAT
119261139 A
1 A
119261140 TTTTAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:119266041 original size:20 final size:20
Alignment explanation
Indices: 119266016--119266053 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
119266006 ATGTAATATT
* *
119266016 TTAATTTTTATATTTTATAA
1 TTAATTTTCATATATTATAA
119266036 TTAATTTTCATATATTAT
1 TTAATTTTCATATATTAT
119266054 TTTTTGTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (20 bp):
TTAATTTTCATATATTATAA
Found at i:119270668 original size:21 final size:21
Alignment explanation
Indices: 119270625--119270668 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
119270615 ATCCTCTAAA
* *
119270625 AATTTTCTATTTAAAAAATTT
1 AATTTTCTACTTAAAAAAATT
119270646 AATTTT-TACTTAAAATAAATT
1 AATTTTCTACTTAAAA-AAATT
119270667 AA
1 AA
119270669 AATATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
AATTTTCTACTTAAAAAAATT
Found at i:119270762 original size:13 final size:13
Alignment explanation
Indices: 119270744--119270782 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
119270734 TCAAATAATT
119270744 TAATTATATTAAA
1 TAATTATATTAAA
*
119270757 TAATTAATTTTAAA
1 TAATT-ATATTAAA
119270771 TAA-TATATTAAA
1 TAATTATATTAAA
119270783 CAGTTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 7 0.30
13 6 0.26
14 10 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATTATATTAAA
Found at i:119274761 original size:5 final size:5
Alignment explanation
Indices: 119274751--119274778 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
119274741 CATTCTCACC
119274751 CTTTT CTTTT CTTTT CTTTT CTTTT CTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTT
119274779 CCAATCAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
CTTTT
Found at i:119279572 original size:16 final size:17
Alignment explanation
Indices: 119279542--119279592 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
119279532 TCACAACTTC
119279542 TTTGCCTTTTCCTTTTT
1 TTTGCCTTTTCCTTTTT
*
119279559 TTTG-CTTTTTCTTTTT
1 TTTGCCTTTTCCTTTTT
* *
119279575 CTTTTCCTTTACCTTTTT
1 -TTTGCCTTTTCCTTTTT
119279593 CCAATTTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 11 0.39
17 7 0.25
18 10 0.36
ACGTcount: A:0.02, C:0.22, G:0.04, T:0.73
Consensus pattern (17 bp):
TTTGCCTTTTCCTTTTT
Found at i:119279591 original size:17 final size:17
Alignment explanation
Indices: 119279539--119279591 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
119279529 CGCTCACAAC
*
119279539 TTCTTTGCCTTTTCCTT
1 TTCTTTTCCTTTTCCTT
* *
119279556 TT-TTTTGCTTTTTCTTT
1 TTCTTTT-CCTTTTCCTT
*
119279573 TTCTTTTCCTTTACCTT
1 TTCTTTTCCTTTTCCTT
119279590 TT
1 TT
119279592 TCCAATTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
16 3 0.11
17 21 0.75
18 4 0.14
ACGTcount: A:0.02, C:0.23, G:0.04, T:0.72
Consensus pattern (17 bp):
TTCTTTTCCTTTTCCTT
Found at i:119280839 original size:21 final size:21
Alignment explanation
Indices: 119280798--119280839 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
119280788 AAAAAATTGC
119280798 AAATATTGCAGGCAAAAATAT
1 AAATATTGCAGGCAAAAATAT
119280819 AAATATTGCAGGCAAAAATAT
1 AAATATTGCAGGCAAAAATAT
119280840 TTATTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (21 bp):
AAATATTGCAGGCAAAAATAT
Found at i:119284152 original size:23 final size:22
Alignment explanation
Indices: 119284122--119284229 Score: 123
Period size: 21 Copynumber: 5.0 Consensus size: 22
119284112 GCTTTACTGA
* *
119284122 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTA-T
*
119284145 TCAGGCACCTCGTGTGTCGTA-
1 TCAGGCACCTTGTGTGTCGTAT
119284166 TCAGGCACCTTGTGTGTCGTA-
1 TCAGGCACCTTGTGTGTCGTAT
*
119284187 TCAGGCACCTCGTGTGTCGT-T
1 TCAGGCACCTTGTGTGTCGTAT
* * *
119284208 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACCTTGTGTGTCGTAT
119284230 ACTGATCAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
21 55 0.74
22 1 0.01
23 18 0.24
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (22 bp):
TCAGGCACCTTGTGTGTCGTAT
Found at i:119284184 original size:44 final size:43
Alignment explanation
Indices: 119284121--119284229 Score: 166
Period size: 42 Copynumber: 2.5 Consensus size: 43
119284111 GGCTTTACTG
119284121 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA-TTCAGGCACCTCGTGTGTCGT
* *
119284165 ATCAGGCACCTTGTGTGTCGTA-TCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATTCAGGCACCTCGTGTGTCGT
* *
119284207 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
119284230 ACTGATCAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 38 0.66
44 20 0.34
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.37
Consensus pattern (43 bp):
ATCAGGCACTTTATGTGTCGTATTCAGGCACCTCGTGTGTCGT
Found at i:119289339 original size:27 final size:26
Alignment explanation
Indices: 119289303--119289357 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
119289293 TTCTAAAAAC
119289303 TTTTATAATTTTT-TTTACTTTTATTGAA
1 TTTTATAATTTTTATTT--TTTTA-TGAA
119289331 TTTT-TAATTTTTATTTTTTTATGAA
1 TTTTATAATTTTTATTTTTTTATGAA
119289356 TT
1 TT
119289358 ATATGTCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 6 0.23
26 5 0.19
27 8 0.31
28 7 0.27
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (26 bp):
TTTTATAATTTTTATTTTTTTATGAA
Found at i:119290146 original size:21 final size:20
Alignment explanation
Indices: 119290117--119290155 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
119290107 CCATTATTAA
119290117 TCCTATCATAATTTAATAACT
1 TCCTATCAT-ATTTAATAACT
* *
119290138 TCCTTTCATTTTTAATAA
1 TCCTATCATATTTAATAA
119290156 TATATTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (20 bp):
TCCTATCATATTTAATAACT
Found at i:119290965 original size:17 final size:18
Alignment explanation
Indices: 119290943--119290976 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
119290933 ATAAACGTGG
*
119290943 CTATTTTTAAA-ATTTAC
1 CTATTTATAAATATTTAC
119290960 CTATTTATAAATATTTA
1 CTATTTATAAATATTTA
119290977 ACGAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (18 bp):
CTATTTATAAATATTTAC
Found at i:119300473 original size:18 final size:18
Alignment explanation
Indices: 119300425--119300478 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
119300415 TATCTATACT
119300425 AATATATTTT-TTATTTA
1 AATATATTTTATTATTTA
*
119300442 AA-ATAAGTTATATTATTTA
1 AATAT-A-TTTTATTATTTA
*
119300461 AATATATTTTATTTTTTA
1 AATATATTTTATTATTTA
119300479 TTAAAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
16 2 0.07
17 3 0.10
18 13 0.43
19 10 0.33
20 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
AATATATTTTATTATTTA
Found at i:119306584 original size:15 final size:15
Alignment explanation
Indices: 119306564--119306601 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
119306554 AATTATGTAC
*
119306564 TTAATTTTTTAATAT
1 TTAATTTTTTAATAG
*
119306579 TTAATTTTTTAATCG
1 TTAATTTTTTAATAG
119306594 TTAATTTT
1 TTAATTTT
119306602 CCTCTCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (15 bp):
TTAATTTTTTAATAG
Found at i:119325652 original size:22 final size:24
Alignment explanation
Indices: 119325622--119325673 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
119325612 ACAGATACTC
*
119325622 GAATTTCC-ACCCAAACACA-CCA
1 GAATATCCAACCCAAACACACCCA
119325644 GAATATCCAACCCAAACACACCCA
1 GAATATCCAACCCAAACACACCCA
119325668 GAATAT
1 GAATAT
119325674 TTTAAATCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 7 0.26
23 11 0.41
24 9 0.33
ACGTcount: A:0.44, C:0.37, G:0.06, T:0.13
Consensus pattern (24 bp):
GAATATCCAACCCAAACACACCCA
Found at i:119326240 original size:12 final size:12
Alignment explanation
Indices: 119326225--119326255 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
119326215 TTCTCTTTTA
119326225 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
119326237 TTTTTCTTTCTC
1 TTTTTCTTTCCC
119326249 TTTTTCT
1 TTTTTCT
119326256 CCCGTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:119326653 original size:15 final size:14
Alignment explanation
Indices: 119326635--119326665 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
119326625 TTAATTTATT
119326635 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
119326650 TAATAATAATCTAA
1 TAATAATAATCTAA
119326664 TA
1 TA
119326666 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:119326676 original size:21 final size:20
Alignment explanation
Indices: 119326652--119326720 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
119326642 AATGCTAATA
119326652 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
119326673 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
119326692 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
119326713 ATAATAAT
1 ATAATAAT
119326721 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:119329793 original size:26 final size:27
Alignment explanation
Indices: 119329764--119329831 Score: 75
Period size: 31 Copynumber: 2.4 Consensus size: 27
119329754 ATTTTATTAT
*
119329764 TTATAATAAAAATAT-TAATTTAATCA
1 TTATAATAAAAAAATATAATTTAATCA
119329790 TTATATGATAAGAAAAAATATAATTTAATCA
1 TTATA--AT-A-AAAAAATATAATTTAATCA
*
119329821 TTATATTAAAA
1 TTATAATAAAA
119329832 TTTTCATCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
26 5 0.14
27 3 0.09
28 3 0.09
29 2 0.06
30 6 0.17
31 16 0.46
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (27 bp):
TTATAATAAAAAAATATAATTTAATCA
Found at i:119330567 original size:5 final size:6
Alignment explanation
Indices: 119330552--119330576 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
119330542 AATACGAGAA
119330552 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
119330577 GAAATCGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:119336727 original size:35 final size:35
Alignment explanation
Indices: 119336687--119336759 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
119336677 CACGAATCTT
119336687 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
1 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
119336722 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
1 GATCTTGAATTCGATATTTTATAAGATGACAAAAG
119336757 GAT
1 GAT
119336760 TGACAAGGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.34
Consensus pattern (35 bp):
GATCTTGAATTCGATATTTTATAAGATGACAAAAG
Found at i:119358960 original size:15 final size:16
Alignment explanation
Indices: 119358936--119358965 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
119358926 ATCTCGTTAT
119358936 AAAAACTTACAAAATG
1 AAAAACTTACAAAATG
119358952 AAAAA-TTACAAAAT
1 AAAAACTTACAAAAT
119358966 AATTATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAAACTTACAAAATG
Found at i:119368678 original size:27 final size:27
Alignment explanation
Indices: 119368648--119368702 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
119368638 AAATAGGAGG
119368648 ATAATGCGCTTCAAAACACTTAAATTT
1 ATAATGCGCTTCAAAACACTTAAATTT
119368675 ATAATGCGCTTCAAAACACTTAAATTT
1 ATAATGCGCTTCAAAACACTTAAATTT
119368702 A
1 A
119368703 CGTCCTTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (27 bp):
ATAATGCGCTTCAAAACACTTAAATTT
Found at i:119369188 original size:21 final size:21
Alignment explanation
Indices: 119369134--119369189 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
119369124 AAAATTTATT
119369134 TTAAATAAAAAATTATATCAA
1 TTAAATAAAAAATTATATCAA
* **
119369155 TAAAATTTTAAAATTA-ATCATA
1 TTAAA-TAAAAAATTATATCA-A
119369177 TTAAATAAAAAAT
1 TTAAATAAAAAAT
119369190 CAATTTTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (21 bp):
TTAAATAAAAAATTATATCAA
Found at i:119371144 original size:29 final size:29
Alignment explanation
Indices: 119371102--119371162 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
119371092 GTACTACTAG
**
119371102 ATTAAATAATAGGTTAACATTGCTTGTCT
1 ATTAAATAATAGGTTAACATTGCCCGTCT
119371131 ATTAAATAATAGGTTAACATTGCCCGTCT
1 ATTAAATAATAGGTTAACATTGCCCGTCT
119371160 ATT
1 ATT
119371163 TTTCTTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (29 bp):
ATTAAATAATAGGTTAACATTGCCCGTCT
Found at i:119373342 original size:51 final size:51
Alignment explanation
Indices: 119373282--119373384 Score: 154
Period size: 51 Copynumber: 2.0 Consensus size: 51
119373272 AAACCCCATT
* * *
119373282 GGATTAACCAA-CTCCATTTCATAATCAAACTTTTGATGAGAAATCGGATCC
1 GGATTAACCAAGC-CCAATTCATAATCAAACGTTTGACGAGAAATCGGATCC
*
119373333 GGATTAACCAAGCCCAATTCATAATCATACGTTTGACGAGAAATCGGATCC
1 GGATTAACCAAGCCCAATTCATAATCAAACGTTTGACGAGAAATCGGATCC
119373384 G
1 G
119373385 ACAGAGTTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
51 46 0.98
52 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (51 bp):
GGATTAACCAAGCCCAATTCATAATCAAACGTTTGACGAGAAATCGGATCC
Found at i:119373671 original size:20 final size:20
Alignment explanation
Indices: 119373625--119373672 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
119373615 CGTCGGAACC
**
119373625 CTAATTTTGTTGGTGTTGAAA
1 CTAA-TTTGTTGGTACTGAAA
* *
119373646 CCAATTTGTTGGTACTGAGA
1 CTAATTTGTTGGTACTGAAA
119373666 CTAATTT
1 CTAATTT
119373673 CCATGGAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.25, C:0.10, G:0.21, T:0.44
Consensus pattern (20 bp):
CTAATTTGTTGGTACTGAAA
Found at i:119377532 original size:7 final size:7
Alignment explanation
Indices: 119377495--119377528 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
119377485 TTTCGGTGCT
119377495 TTTAATA
1 TTTAATA
119377502 TTTAATA
1 TTTAATA
119377509 TTTAATA
1 TTTAATA
*
119377516 TTTAATG
1 TTTAATA
119377523 TTTAAT
1 TTTAAT
119377529 GTTTTTCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (7 bp):
TTTAATA
Found at i:119378049 original size:13 final size:14
Alignment explanation
Indices: 119378028--119378056 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
119378018 TGAAAAATAG
119378028 ATTAGAAAATATTT
1 ATTAGAAAATATTT
119378042 ATTA-AAAATATTT
1 ATTAGAAAATATTT
119378055 AT
1 AT
119378057 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:119378455 original size:25 final size:26
Alignment explanation
Indices: 119378404--119378456 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
119378394 AATATAATTG
**
119378404 TATATTTACTTAATTTTAGAATAAAA
1 TATATTTACTTAATTAAAGAATAAAA
* *
119378430 TATATTTA-TTAATTAAATAATTAAA
1 TATATTTACTTAATTAAAGAATAAAA
119378455 TA
1 TA
119378457 ATAAGATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
TATATTTACTTAATTAAAGAATAAAA
Found at i:119378619 original size:31 final size:32
Alignment explanation
Indices: 119378570--119378633 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
119378560 ATATTAAATA
*
119378570 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
119378601 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
119378633 A
1 A
119378634 CAAATGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:119379584 original size:15 final size:15
Alignment explanation
Indices: 119379561--119379604 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
119379551 TATCAAATTT
119379561 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
119379576 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
119379591 ATATTGATTGAAAT
1 ATATTGATTGAAAT
119379605 ATAATATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:119393745 original size:13 final size:12
Alignment explanation
Indices: 119393727--119393771 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 12
119393717 TCTCAAAGAT
119393727 AAATATTTTATTA
1 AAATATTTT-TTA
119393740 AAATATATTTTTA
1 AAATAT-TTTTTA
119393753 TAAATAATTTTTTA
1 -AAAT-ATTTTTTA
119393767 AAATA
1 AAATA
119393772 AATTTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.03
13 13 0.45
14 13 0.45
15 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
AAATATTTTTTA
Found at i:119393755 original size:27 final size:28
Alignment explanation
Indices: 119393725--119393791 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
119393715 TATCTCAAAG
*
119393725 ATAAAT-ATTTTATTAAAATATATTTTT
1 ATAAATAATTTTATTAAAATAAATTTTT
119393752 ATAAATAATTTT-TTAAAATAAATTTTT
1 ATAAATAATTTTATTAAAATAAATTTTT
*
119393779 ATAATTAATTTTA
1 ATAAATAATTTTA
119393792 CTTTAGCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 31 0.86
28 5 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
ATAAATAATTTTATTAAAATAAATTTTT
Found at i:119393772 original size:13 final size:14
Alignment explanation
Indices: 119393725--119393790 Score: 68
Period size: 14 Copynumber: 4.9 Consensus size: 14
119393715 TATCTCAAAG
119393725 ATAAAT-ATTTTATT
1 ATAAATAATTTT-TT
119393739 A-AAAT-ATATTTTT
1 ATAAATAAT-TTTTT
119393752 ATAAATAATTTTTT
1 ATAAATAATTTTTT
*
119393766 A-AAATAAATTTTT
1 ATAAATAATTTTTT
*
119393779 ATAATTAATTTT
1 ATAAATAATTTT
119393791 ACTTTAGCAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
13 21 0.47
14 22 0.49
15 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATAAATAATTTTTT
Found at i:119398980 original size:13 final size:13
Alignment explanation
Indices: 119398964--119398997 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
119398954 TTATTTTGTA
*
119398964 AAATTTTAAAATT
1 AAATTTAAAAATT
119398977 AAATTGTAAAAATT
1 AAATT-TAAAAATT
119398991 AAATTTA
1 AAATTTA
119398998 TTAATAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
AAATTTAAAAATT
Found at i:119405040 original size:14 final size:14
Alignment explanation
Indices: 119404999--119405040 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
119404989 TAACACCTAT
119404999 AAAAATAATATTTTA
1 AAAAATAATA-TTTA
*
119405014 ATAAAATTA-ATTTA
1 A-AAAATAATATTTA
119405028 AAAAATAATATTT
1 AAAAATAATATTT
119405041 TAATTCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 2 0.09
16 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AAAAATAATATTTA
Found at i:119405042 original size:15 final size:15
Alignment explanation
Indices: 119404999--119405043 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
119404989 TAACACCTAT
119404999 AAAAATAATATTTTA
1 AAAAATAATATTTTA
*
119405014 ATAAAAT--TAATTTA
1 A-AAAATAATATTTTA
119405028 AAAAATAATATTTTA
1 AAAAATAATATTTTA
119405043 A
1 A
119405044 TTCAAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 5 0.20
14 7 0.28
15 8 0.32
16 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAAATAATATTTTA
Found at i:119409496 original size:29 final size:28
Alignment explanation
Indices: 119409447--119409501 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
119409437 TTTTTTATAA
119409447 TTTTAATGATTTTAAATTTTAAAATAGT
1 TTTTAATGATTTTAAATTTTAAAATAGT
119409475 TTTTATAT-ATTTCTAAATTTTAAAATA
1 TTTTA-ATGATTT-TAAATTTTAAAATA
119409502 TTAATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 9 0.36
29 16 0.64
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (28 bp):
TTTTAATGATTTTAAATTTTAAAATAGT
Found at i:119409513 original size:29 final size:28
Alignment explanation
Indices: 119409455--119409513 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
119409445 AATTTTAATG
* *
119409455 ATTTTAAATTTTAAAATAGTTTTTATAT
1 ATTTTAAATTTTAAAATAGTTATTAAAT
119409483 ATTTCTAAATTTTAAAATA-TTAATTAAAT
1 ATTT-TAAATTTTAAAATAGTT-ATTAAAT
119409512 AT
1 AT
119409514 GAATGTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (28 bp):
ATTTTAAATTTTAAAATAGTTATTAAAT
Found at i:119419103 original size:22 final size:22
Alignment explanation
Indices: 119419075--119419142 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
119419065 GGGAAAGTGA
*
119419075 AAATTTAATTATAATTTTTTAT
1 AAATTTAATTATAATTTATTAT
*
119419097 AAATTTAAATATAGATTTATTAT
1 AAATTTAATTATA-ATTTATTAT
*
119419120 ATA-TTAATTTATAATTTCATTAT
1 AAATTTAA-TTATAATTT-ATTAT
119419143 TTTTAAAGGG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
22 20 0.51
23 19 0.49
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (22 bp):
AAATTTAATTATAATTTATTAT
Found at i:119419120 original size:11 final size:11
Alignment explanation
Indices: 119419076--119419142 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
119419066 GGAAAGTGAA
119419076 AATTTAATTAT
1 AATTTAATTAT
*
119419087 AATTT-TTTAT
1 AATTTAATTAT
*
119419097 AAATTTAAATAT
1 -AATTTAATTAT
119419109 AGATTT-ATTAT
1 A-ATTTAATTAT
119419120 -ATATTAATTTAT
1 AAT-TTAA-TTAT
*
119419132 AATTTCATTAT
1 AATTTAATTAT
119419143 TTTTAAAGGG
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
9 2 0.05
10 6 0.14
11 20 0.45
12 14 0.32
13 2 0.05
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
AATTTAATTAT
Found at i:119423891 original size:17 final size:17
Alignment explanation
Indices: 119423871--119423915 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
119423861 AGTATTGTTT
119423871 ATTAAAATTATTTTTGA
1 ATTAAAATTATTTTTGA
*
119423888 ATTATAAAGTATTTTTGA
1 ATTA-AAATTATTTTTGA
*
119423906 ATAAAAATTA
1 ATTAAAATTA
119423916 AATTTTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (17 bp):
ATTAAAATTATTTTTGA
Found at i:119423902 original size:18 final size:17
Alignment explanation
Indices: 119423859--119423911 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
119423849 GCGTTATTTG
119423859 AAAGTATTGTTT--ATTA
1 AAAGTATT-TTTGAATTA
*
119423875 AAATTATTTTTGAATTA
1 AAAGTATTTTTGAATTA
119423892 TAAAGTATTTTTGAA-TA
1 -AAAGTATTTTTGAATTA
119423909 AAA
1 AAA
119423912 ATTAAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 3 0.09
16 10 0.31
17 6 0.19
18 13 0.41
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.47
Consensus pattern (17 bp):
AAAGTATTTTTGAATTA
Found at i:119437608 original size:19 final size:19
Alignment explanation
Indices: 119437556--119437610 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
119437546 GTATATATAT
*
119437556 TAATAATCAAATAATAAAAA
1 TAATAAT-AAATAATTAAAA
**
119437576 TAATGAAT-TTTAATTAAAA
1 TAAT-AATAAATAATTAAAA
119437595 TAATAATAAATAATTA
1 TAATAATAAATAATTA
119437611 TCATAAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.11
19 18 0.64
20 4 0.14
21 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TAATAATAAATAATTAAAA
Found at i:119438220 original size:18 final size:18
Alignment explanation
Indices: 119438168--119438220 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
119438158 TGTGTGAATG
119438168 TTAAAAAGTGTTTAAATA
1 TTAAAAAGTGTTTAAATA
* * * *
119438186 ATAATATA-TATTAAAATA
1 TTAA-AAAGTGTTTAAATA
119438204 TTAAAAAGTGTTTAAAT
1 TTAAAAAGTGTTTAAAT
119438221 CATTTAAAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 4
0.68 0.22 0.11
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.40
Consensus pattern (18 bp):
TTAAAAAGTGTTTAAATA
Found at i:119447928 original size:47 final size:47
Alignment explanation
Indices: 119447866--119447991 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
119447856 CTTTACATAA
* * * *
119447866 TGATGCCATAGCCCAGCTATGGTCTTACACA-TAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAC
* * *
119447913 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
* *
119447960 CGATGCCATATCCCAGATATGGTCTTATACAG
1 TGATGCCATATCCCAGATATGGTCTTACACAG
119447992 AAATCACTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 68 0.99
48 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
Found at i:119448043 original size:31 final size:31
Alignment explanation
Indices: 119448008--119448215 Score: 251
Period size: 31 Copynumber: 6.7 Consensus size: 31
119447998 CTTGTCACTT
*
119448008 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
119448039 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
** *
119448070 GTAGCC-GGGCTACCACTTTTCACTTATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
119448100 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
119448131 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
*
119448162 GTAGCTGAAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CAAAGCTACCACTTTTCACTGATCAG
**
119448193 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCAAAGCTACCACTTTTCA
119448216 GTTGTCATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
30 30 0.20
31 120 0.78
32 2 0.01
33 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:119448165 original size:62 final size:62
Alignment explanation
Indices: 119448015--119448215 Score: 296
Period size: 62 Copynumber: 3.3 Consensus size: 62
119448005 CTTGTAGCCA
* ** * *
119448015 AAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
* * * *
119448077 -GGCTACCACTTTTCACTTATCAGGTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
* *
119448138 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
119448200 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
119448216 GTTGTCATTT
Statistics
Matches: 123, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
61 52 0.42
62 71 0.58
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (62 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
Found at i:119448289 original size:50 final size:51
Alignment explanation
Indices: 119448193--119448321 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
119448183 CACTGATCAG
* * * *
119448193 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
119448244 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTG-CCATTGATCAGATAAGT
*
119448294 GTAGCCGAAGCTATCACTTGTCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
119448322 TTTCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 46 0.65
51 25 0.35
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
Found at i:119459012 original size:15 final size:16
Alignment explanation
Indices: 119458973--119459014 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
119458963 AAAAAAATAA
*
119458973 TAATAATTAAGCTCGAT
1 TAAT-ATTAAGCTCAAT
119458990 TGAATATTAA-CTCAAT
1 T-AATATTAAGCTCAAT
119459006 TAATATTAA
1 TAATATTAA
119459015 TATTATTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 8 0.35
16 6 0.26
17 6 0.26
18 3 0.13
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (16 bp):
TAATATTAAGCTCAAT
Found at i:119460763 original size:19 final size:21
Alignment explanation
Indices: 119460737--119460782 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
119460727 ATTTATTTTT
119460737 ATATAAAAATAT-TTT-TAAAA
1 ATATAAAAA-ATCTTTGTAAAA
119460757 A-ATAAAAAATCTTTGTAAAA
1 ATATAAAAAATCTTTGTAAAA
119460777 ATATAA
1 ATATAA
119460783 TTTTCTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 2 0.09
19 10 0.43
20 7 0.30
21 4 0.17
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
ATATAAAAAATCTTTGTAAAA
Found at i:119460764 original size:20 final size:21
Alignment explanation
Indices: 119460736--119460782 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
119460726 TATTTATTTT
*
119460736 TATATAAAAATATTTTTAAAAA
1 TATA-AAAAATATTTGTAAAAA
*
119460758 -ATAAAAAATCTTTGTAAAAA
1 TATAAAAAATATTTGTAAAAA
119460778 TATAA
1 TATAA
119460783 TTTTCTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
TATAAAAAATATTTGTAAAAA
Found at i:119461925 original size:47 final size:47
Alignment explanation
Indices: 119461863--119461988 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
119461853 CTTTACATAA
* * * *
119461863 TGATGCCATAGCCCAGCTATGGTCTTACACA-TAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAC
* * *
119461910 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
* *
119461957 CGATGCCATATCCCAGATATGGTCTTATACAG
1 TGATGCCATATCCCAGATATGGTCTTACACAG
119461989 AAATCACTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 68 0.99
48 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
Found at i:119462004 original size:7 final size:7
Alignment explanation
Indices: 119461992--119462020 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
119461982 TATACAGAAA
119461992 TCACTTG
1 TCACTTG
119461999 TCACTTG
1 TCACTTG
119462006 TCACTTG
1 TCACTTG
119462013 TCACTTG
1 TCACTTG
119462020 T
1 T
119462021 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:119462054 original size:31 final size:31
Alignment explanation
Indices: 119462019--119462195 Score: 216
Period size: 31 Copynumber: 5.7 Consensus size: 31
119462009 CTTGTCACTT
*
119462019 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
119462050 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**
119462081 GTAGCC-GGGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
119462111 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
119462142 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
*
119462173 GTAGCTGAAA-CTACCACTTTTCA
1 GTAGC-CAAAGCTACCACTTTTCA
119462196 GTTGTCATTT
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
30 29 0.23
31 95 0.75
32 2 0.02
33 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:119462104 original size:61 final size:62
Alignment explanation
Indices: 119462026--119462195 Score: 252
Period size: 61 Copynumber: 2.8 Consensus size: 62
119462016 CTTGTAGCCA
* ** * *
119462026 AAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
* * *
119462088 -GGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
*
119462149 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
119462196 GTTGTCATTT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 53 0.55
62 43 0.45
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (62 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
Found at i:119462176 original size:92 final size:93
Alignment explanation
Indices: 119462019--119462195 Score: 257
Period size: 92 Copynumber: 1.9 Consensus size: 93
119462009 CTTGTCACTT
* ** *
119462019 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTA
1 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
**
119462084 GCCG-GGCTACCACTTTTCACTGATCAG
66 GCCGAAACTACCACTTTTCACTGATCAG
* * *
119462111 GTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
*
119462176 GCTGAAACTACCACTTTTCA
66 GCCGAAACTACCACTTTTCA
119462196 GTTGTCATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 61 0.82
93 13 0.18
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (93 bp):
GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
GCCGAAACTACCACTTTTCACTGATCAG
Found at i:119462264 original size:50 final size:51
Alignment explanation
Indices: 119462173--119462301 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
119462163 CACTGATCAG
* * * * *
119462173 GTAGCTGAAACTACCACTTTTCAGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
119462224 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTG-CCATTGATCAGATAAGT
*
119462274 ATAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
119462302 TTCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 46 0.66
51 24 0.34
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
Found at i:119464719 original size:23 final size:23
Alignment explanation
Indices: 119464679--119464724 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
119464669 AAAAATGATC
119464679 AAAATAATATAATATATT-TTAT
1 AAAATAATATAATATATTATTAT
* *
119464701 AAAATTAATATATTTTATTATTAT
1 AAAA-TAATATAATATATTATTAT
119464725 CGAATTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 12 0.60
24 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AAAATAATATAATATATTATTAT
Found at i:119478802 original size:31 final size:31
Alignment explanation
Indices: 119478773--119478832 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
119478763 GGCACTTAAT
* *
119478773 TTTTTTTTTCAATTTGGTATCTAAACTTAACA
1 TTTTTTCTT-AATTTGATATCTAAACTTAACA
119478805 TTTTTTCTTAATTTGATATCTAAACTTA
1 TTTTTTCTTAATTTGATATCTAAACTTA
119478833 TTTAGTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.55
Consensus pattern (31 bp):
TTTTTTCTTAATTTGATATCTAAACTTAACA
Found at i:119479035 original size:20 final size:20
Alignment explanation
Indices: 119478989--119479028 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
119478979 AATAAATGAC
119478989 ATGAAATTTCTTTTTTATAT
1 ATGAAATTTCTTTTTTATAT
119479009 ATGAAATTTCTTTTTTATAT
1 ATGAAATTTCTTTTTTATAT
119479029 TTTAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (20 bp):
ATGAAATTTCTTTTTTATAT
Found at i:119480451 original size:18 final size:18
Alignment explanation
Indices: 119480428--119480466 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
119480418 TAACTCAAAA
119480428 TTTATTTTATTAA-ATATT
1 TTTATTTTA-TAATATATT
119480446 TTTATTTTATAATATATT
1 TTTATTTTATAATATATT
119480464 TTT
1 TTT
119480467 TCTTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTTTATAATATATT
Found at i:119481309 original size:16 final size:15
Alignment explanation
Indices: 119481279--119481312 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
119481269 AATTGAATCA
*
119481279 AATTTTAATATTTTT
1 AATTTTAAAATTTTT
119481294 AATTTTATAAATTTTT
1 AATTTTA-AAATTTTT
119481310 AAT
1 AAT
119481313 AATTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
AATTTTAAAATTTTT
Found at i:119482706 original size:15 final size:15
Alignment explanation
Indices: 119482686--119482717 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
119482676 GAGTTGTCGT
119482686 TGCTGGTACTGGTGA
1 TGCTGGTACTGGTGA
*
119482701 TGCTGGTGCTGGTGA
1 TGCTGGTACTGGTGA
119482716 TG
1 TG
119482718 GCGACGGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.44, T:0.34
Consensus pattern (15 bp):
TGCTGGTACTGGTGA
Found at i:119483035 original size:36 final size:36
Alignment explanation
Indices: 119482995--119483070 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
119482985 TTGTAGCCGC
* * *
119482995 TGATTGTGTTGGA-GCTGGTGTTGCTGTTGTAGATGA
1 TGATTGTGAT-GATGCTGATGTTGCTGTTGCAGATGA
* *
119483031 TGATTGTGATGATGTTGATGTTGTTGTTGCAGATGA
1 TGATTGTGATGATGCTGATGTTGCTGTTGCAGATGA
119483067 TGAT
1 TGAT
119483071 GATGGTATGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 2 0.06
36 32 0.94
ACGTcount: A:0.17, C:0.04, G:0.36, T:0.43
Consensus pattern (36 bp):
TGATTGTGATGATGCTGATGTTGCTGTTGCAGATGA
Found at i:119483053 original size:30 final size:30
Alignment explanation
Indices: 119483013--119483101 Score: 76
Period size: 30 Copynumber: 3.0 Consensus size: 30
119483003 TTGGAGCTGG
*
119483013 TGTTGCTGTTGTAGATGATGATTGTGATGA
1 TGTTGATGTTGTAGATGATGATTGTGATGA
* *
119483043 TGTTGATGTTGTTGTTGCA-GA-TGATGATGA
1 TGTTGATGTTGTAGATG-ATGATTG-TGATGA
* * *
119483073 TGGT-ATGGTTGTAGGTGCTGATTGTGATG
1 TGTTGAT-GTTGTAGATGATGATTGTGATG
119483102 GTGATTGTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
29 4 0.09
30 40 0.85
31 3 0.06
ACGTcount: A:0.18, C:0.03, G:0.36, T:0.43
Consensus pattern (30 bp):
TGTTGATGTTGTAGATGATGATTGTGATGA
Found at i:119483083 original size:24 final size:24
Alignment explanation
Indices: 119483038--119483083 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
119483028 TGATGATTGT
* * * *
119483038 GATGATGTTGATGTTGTTGTTGCA
1 GATGATGATGATGGTATGGTTGCA
119483062 GATGATGATGATGGTATGGTTG
1 GATGATGATGATGGTATGGTTG
119483084 TAGGTGCTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (24 bp):
GATGATGATGATGGTATGGTTGCA
Found at i:119483094 original size:27 final size:30
Alignment explanation
Indices: 119483064--119483142 Score: 76
Period size: 33 Copynumber: 2.6 Consensus size: 30
119483054 TTGTTGCAGA
119483064 TGATGATGATGGTA-TGGTT-GTA-GGTGC
1 TGATGATGATGGTAGTGGTTGGTACGGTGC
*
119483091 TGATTG-TGATGGTGATTGTGTTGGTACTGGTGC
1 TGA-TGATGATGGT-AGTG-GTTGGTAC-GGTGC
*
119483124 AGATGATGATGGTAGTGGT
1 TGATGATGATGGTAGTGGT
119483143 GTCGTTGCAG
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
27 10 0.24
28 3 0.07
29 2 0.05
30 3 0.07
31 5 0.12
32 5 0.12
33 14 0.33
ACGTcount: A:0.18, C:0.04, G:0.41, T:0.38
Consensus pattern (30 bp):
TGATGATGATGGTAGTGGTTGGTACGGTGC
Found at i:119483178 original size:27 final size:27
Alignment explanation
Indices: 119483098--119483183 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
119483088 TGCTGATTGT
* * *
119483098 GATGGTGATTGTGTTGGTACTGGTGCA
1 GATGATGATTGTGTTGGTGCTGCTGCA
* *
119483125 GATGATGATGGTAG-TGGTG-TCGTTGCA
1 GATGATGATTGT-GTTGGTGCT-GCTGCA
* *
119483152 GCTGCTGATTGTGTTGGTGCTGCTGCA
1 GATGATGATTGTGTTGGTGCTGCTGCA
119483179 GATGA
1 GATGA
119483184 CGACGACGAT
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
26 2 0.04
27 41 0.91
28 2 0.04
ACGTcount: A:0.15, C:0.10, G:0.40, T:0.35
Consensus pattern (27 bp):
GATGATGATTGTGTTGGTGCTGCTGCA
Found at i:119485515 original size:17 final size:19
Alignment explanation
Indices: 119485488--119485530 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
119485478 GGTGCAATCG
*
119485488 GTAAA-TATTTGTA-TTT-
1 GTAAATTATTTGGATTTTA
119485504 GTAAATTATTTGGATTTTA
1 GTAAATTATTTGGATTTTA
119485523 GTAAATTA
1 GTAAATTA
119485531 AATTTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 7 0.30
18 3 0.13
19 8 0.35
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (19 bp):
GTAAATTATTTGGATTTTA
Found at i:119489245 original size:11 final size:11
Alignment explanation
Indices: 119489229--119489262 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
119489219 AAATTTAATC
119489229 CATTTAATTTT
1 CATTTAATTTT
*
119489240 CATTTAAATTT
1 CATTTAATTTT
119489251 CATTTAAATTTT
1 CATTT-AATTTT
119489263 AAAAATATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (11 bp):
CATTTAATTTT
Found at i:119492182 original size:45 final size:44
Alignment explanation
Indices: 119492115--119492201 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
119492105 AATAATTAAA
119492115 TGTTATGATTTCTACTATTTTGAAAAGT-AAATTTTTACTTTATT
1 TGTTATGATTTCTACTATTTTGAAAAGTAAAATTTTT-CTTTATT
* *
119492159 TGTTATGCTTTGC-ACTAATTTTGAAATGTAAAATTTTTCTTTA
1 TGTTATGATTT-CTACT-ATTTTGAAAAGTAAAATTTTTCTTTA
119492202 GATCTAGCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
44 13 0.34
45 17 0.45
46 8 0.21
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.53
Consensus pattern (44 bp):
TGTTATGATTTCTACTATTTTGAAAAGTAAAATTTTTCTTTATT
Found at i:119495422 original size:19 final size:20
Alignment explanation
Indices: 119495388--119495429 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
119495378 ATAAAGATAT
119495388 TTAATTATGTTTTATAATGA
1 TTAATTATGTTTTATAATGA
*
119495408 TTAATTTTG-TTTATAATGA
1 TTAATTATGTTTTATAATGA
119495427 TTA
1 TTA
119495430 TGATATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
TTAATTATGTTTTATAATGA
Found at i:119496750 original size:23 final size:25
Alignment explanation
Indices: 119496717--119496763 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
119496707 TCATTCTTCT
*
119496717 AAAATTTAAAAAAT-ATAATTATAC
1 AAAATTTAAAAAATAATAAATATAC
119496741 AAAA-TTAAAAAATAATAAATATA
1 AAAATTTAAAAAATAATAAATATA
119496764 TAGAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (25 bp):
AAAATTTAAAAAATAATAAATATAC
Done.