Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 411 of 427
Found at i:119504872 original size:46 final size:46
Alignment explanation
Indices: 119504701--119504872 Score: 247
Period size: 46 Copynumber: 3.7 Consensus size: 46
119504691 TGTCATAGTG
* * * *
119504701 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
119504747 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
119504793 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
119504839 TCTTTCAACCATGGTCTTACACATTTTATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
119504873 AGAGCACACT
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
45 4 0.03
46 111 0.97
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:119507025 original size:11 final size:11
Alignment explanation
Indices: 119507009--119507060 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
119506999 TATACTAAAT
119507009 AAATAATAATA
1 AAATAATAATA
*
119507020 AAATAAT-ATT
1 AAATAATAATA
* *
119507030 AAATATCTCATA
1 AAATA-ATAATA
*
119507042 AAATATTAATA
1 AAATAATAATA
119507053 AAATAATA
1 AAATAATA
119507061 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:119509815 original size:22 final size:22
Alignment explanation
Indices: 119509790--119509850 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 22
119509780 TTAGTTTCTA
119509790 TACTTAAATTTTTTTAATTTAG
1 TACTTAAATTTTTTTAATTTAG
* *
119509812 TACTTAACAATTTGTTAATTTAG
1 TACTTAA-ATTTTTTTAATTTAG
* *
119509835 TATTTAAGTTTTTTTA
1 TACTTAAATTTTTTTA
119509851 GGTTCAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 13 0.41
23 19 0.59
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (22 bp):
TACTTAAATTTTTTTAATTTAG
Found at i:119512722 original size:13 final size:13
Alignment explanation
Indices: 119512704--119512731 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
119512694 TTTTATACTT
119512704 CTCAAAAGTATTG
1 CTCAAAAGTATTG
119512717 CTCAAAAGTATTG
1 CTCAAAAGTATTG
119512730 CT
1 CT
119512732 AAACTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (13 bp):
CTCAAAAGTATTG
Found at i:119518175 original size:17 final size:18
Alignment explanation
Indices: 119518141--119518176 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
119518131 AGTTTATACG
119518141 GTAATTTTGATTTAATGT
1 GTAATTTTGATTTAATGT
*
119518159 GTAATTTT-ATTTGATGT
1 GTAATTTTGATTTAATGT
119518176 G
1 G
119518177 ATTATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (18 bp):
GTAATTTTGATTTAATGT
Found at i:119527142 original size:21 final size:22
Alignment explanation
Indices: 119527103--119527148 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
119527093 ATCGGATATT
*
119527103 AATTTTAACTAATTTAACT-GA
1 AATTTTAACTAATTCAACTAGA
* *
119527124 AATTTTAATTTATTCAACTAGA
1 AATTTTAACTAATTCAACTAGA
119527146 AAT
1 AAT
119527149 CGGAAAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (22 bp):
AATTTTAACTAATTCAACTAGA
Found at i:119533492 original size:395 final size:397
Alignment explanation
Indices: 119532713--119533507 Score: 1567
Period size: 395 Copynumber: 2.0 Consensus size: 397
119532703 GTTTTTTTGT
119532713 GGTGTGGTTAAAGGACCGCTCTATTTAATTCAGTTTCCTTAAAAACTGAACTTATTTTACTGTCA
1 GGTGTGGTTAAAGGACCGCTCTATTTAATTCAGTTTCCTTAAAAACTGAACTTATTTTACTGTCA
119532778 AGCATTACATTCTTTGTACCATTGCATCTTCTAATTGAGTCGGAAATGGGATGTAATAATGATTT
66 AGCATTACATTCTTTGTACCATTGCATCTTCTAATTGAGTCGGAAATGGGATGTAATAATGATTT
119532843 GTCATATAGATCTAACTGAGTCGGAATGTCCTTCATAAGAATGATTAAGGTCACATTGCTCTCAA
131 GTCATATAGATCTAACTGAGTCGGAATGTCCTTCATAAGAATGATTAAGGTCACATTGCTCTCAA
119532908 AAGTTTAAAAAAAGAAGAATTAATTTGTGTATGTTCCATCAGCTATTACGGAAGCTGAATTTTTT
196 AAGTTTAAAAAAAGAAGAATTAATTTGTGTATGTTCCATCAGCTATTACGGAAGCTGAATTTTTT
119532973 TACCCATGAAAATCTGATTAGCAGTGCTTCCCAAGGGAAGGTCTCTCTTACCCCTACCATAGTCG
261 TACCCATGAAAATCTGATTAGCAGTGCTTCCCAAGGGAAGGTCTCTCTTACCCCTACCATAGTCG
119533038 AAGTAGAATCACAATATCAAGTGTTTAAAAAGTTACCGCAGGTCTTTTTGTTGAACAACTTTGGT
326 AAGTAGAATCACAATATCAAGTGTTTAAAAAGTTACCGCAGGTCTTTTTGTTGAACAACTTTGGT
119533103 TTGTCCA
391 TTGTCCA
*
119533110 GGTGTGGTTAAAGGACCGCTCTATTTAATTCAGTTTCCTT-AAAACTTAACTTATTTTACTGTCA
1 GGTGTGGTTAAAGGACCGCTCTATTTAATTCAGTTTCCTTAAAAACTGAACTTATTTTACTGTCA
119533174 AGCATTACATTCTTTGTACCATTGCATCTTCTAATTGAGTCGGAAATGGGATGTAATAATGATTT
66 AGCATTACATTCTTTGTACCATTGCATCTTCTAATTGAGTCGGAAATGGGATGTAATAATGATTT
119533239 GTCATATAGATCTAACTGAGTCGGAATGTCCTTCATAAGAATGATTAAGGTCACATTGCTCTCAA
131 GTCATATAGATCTAACTGAGTCGGAATGTCCTTCATAAGAATGATTAAGGTCACATTGCTCTCAA
119533304 AAGTTT-AAAAAAGAAGAATTAATTTGTGTATGTTCCATCAGCTATTACGGAAGCTGAATTTTTT
196 AAGTTTAAAAAAAGAAGAATTAATTTGTGTATGTTCCATCAGCTATTACGGAAGCTGAATTTTTT
119533368 TACCCATGAAAATCTGATTAGCAGTGCTTCCCAAGGGAAGGTCTCTCTTACCCCTACCATAGTCG
261 TACCCATGAAAATCTGATTAGCAGTGCTTCCCAAGGGAAGGTCTCTCTTACCCCTACCATAGTCG
119533433 AAGTAGAATCACAATATCAAGTGTTTAAAAAGTTACCGCAGGTCTTTTTGTTGAACAACTTTGGT
326 AAGTAGAATCACAATATCAAGTGTTTAAAAAGTTACCGCAGGTCTTTTTGTTGAACAACTTTGGT
119533498 TTGTCCA
391 TTGTCCA
119533505 GGT
1 GGT
119533508 AAATGGTAGA
Statistics
Matches: 397, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
395 198 0.50
396 159 0.40
397 40 0.10
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (397 bp):
GGTGTGGTTAAAGGACCGCTCTATTTAATTCAGTTTCCTTAAAAACTGAACTTATTTTACTGTCA
AGCATTACATTCTTTGTACCATTGCATCTTCTAATTGAGTCGGAAATGGGATGTAATAATGATTT
GTCATATAGATCTAACTGAGTCGGAATGTCCTTCATAAGAATGATTAAGGTCACATTGCTCTCAA
AAGTTTAAAAAAAGAAGAATTAATTTGTGTATGTTCCATCAGCTATTACGGAAGCTGAATTTTTT
TACCCATGAAAATCTGATTAGCAGTGCTTCCCAAGGGAAGGTCTCTCTTACCCCTACCATAGTCG
AAGTAGAATCACAATATCAAGTGTTTAAAAAGTTACCGCAGGTCTTTTTGTTGAACAACTTTGGT
TTGTCCA
Found at i:119538797 original size:26 final size:27
Alignment explanation
Indices: 119538768--119538849 Score: 77
Period size: 26 Copynumber: 3.1 Consensus size: 27
119538758 AAATTTTTGT
119538768 TTTTTCTTCTTTTACTTTTAC-TTTAC
1 TTTTTCTTCTTTTACTTTTACTTTTAC
*
119538794 --TTT-TACTTTTACTTTTTACTTTTTAC
1 TTTTTCTTCTTTTAC-TTTTAC-TTTTAC
*
119538820 TTTTTAC-T-TTTTACTTTCACTTTTAC
1 TTTTT-CTTCTTTTACTTTTACTTTTAC
119538846 TTTT
1 TTTT
119538850 ACTTTCACTT
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
23 8 0.17
24 9 0.20
26 15 0.33
27 5 0.11
28 9 0.20
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTTTCTTCTTTTACTTTTACTTTTAC
Found at i:119538867 original size:6 final size:6
Alignment explanation
Indices: 119538776--119538866 Score: 114
Period size: 6 Copynumber: 14.8 Consensus size: 6
119538766 GTTTTTTCTT
119538776 CTTTTA CTTTTA C-TTTA CTTTTA CTTTTA CTTTTTA CTTTTTA CTTTTTA
1 CTTTTA CTTTTA CTTTTA CTTTTA CTTTTA C-TTTTA C-TTTTA C-TTTTA
* *
119538826 CTTTTTA CTTTCA CTTTTA CTTTTA CTTTCA CTTTTA -TTTT
1 C-TTTTA CTTTTA CTTTTA CTTTTA CTTTTA CTTTTA CTTTT
119538867 TCTTATTTGT
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
5 9 0.11
6 43 0.54
7 27 0.34
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (6 bp):
CTTTTA
Found at i:119543933 original size:15 final size:15
Alignment explanation
Indices: 119543912--119543953 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
119543902 TTTTTAAAAA
119543912 ATTTAAAAATATATT
1 ATTTAAAAATATATT
*
119543927 GTTTAAAAATATATT
1 ATTTAAAAATATATT
*
119543942 ATTTAATAATAT
1 ATTTAAAAATAT
119543954 TTTTATCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATTTAAAAATATATT
Found at i:119550884 original size:3 final size:3
Alignment explanation
Indices: 119550876--119550902 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
119550866 ATGAAATATT
119550876 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
119550903 GGGTTGAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:119561248 original size:26 final size:24
Alignment explanation
Indices: 119561204--119561252 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
119561194 CAGTGTAATT
*
119561204 TAAATATTTTTTATTTTATTCTAG
1 TAAATATTTTTTATATTATTCTAG
119561228 TAAATATTTTTTTCATATTATTCTA
1 TAAATA-TTTTTT-ATATTATTCTA
119561253 AAAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 6 0.27
26 10 0.45
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (24 bp):
TAAATATTTTTTATATTATTCTAG
Found at i:119561367 original size:20 final size:21
Alignment explanation
Indices: 119561339--119561377 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
119561329 CTTTCTCTAT
*
119561339 GTGAGTCATAAAT-ATTTTTC
1 GTGAATCATAAATGATTTTTC
119561359 GTGAATCATAAATGATTTT
1 GTGAATCATAAATGATTTT
119561378 AAGGTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (21 bp):
GTGAATCATAAATGATTTTTC
Found at i:119562917 original size:2 final size:2
Alignment explanation
Indices: 119562906--119562940 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
119562896 CCAGTGATTC
119562906 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119562941 TGTGAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:119563581 original size:13 final size:13
Alignment explanation
Indices: 119563563--119563625 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
119563553 TCTTCATTGT
119563563 TTTTGAAAAGTAC
1 TTTTGAAAAGTAC
* *
119563576 TTTTGAGAAGT-G
1 TTTTGAAAAGTAC
* * *
119563588 TTGTGGAAAATTAT
1 TT-TTGAAAAGTAC
*
119563602 TTTTGAGAAGTAC
1 TTTTGAAAAGTAC
119563615 TTTTGAAAAGT
1 TTTTGAAAAGT
119563626 TTGGTTTAAA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
12 2 0.05
13 33 0.89
14 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.22, T:0.41
Consensus pattern (13 bp):
TTTTGAAAAGTAC
Found at i:119563622 original size:26 final size:25
Alignment explanation
Indices: 119563563--119563625 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
119563553 TCTTCATTGT
*
119563563 TTTTGAAAAGTACTTTTGAGAAGTG
1 TTTTGAAAAGTACTTTTGAGAAGTC
* * *
119563588 TTGTGGAAAATTATTTTTGAGAAGTAC
1 TT-TTGAAAAGTACTTTTGAGAAGT-C
119563615 TTTTGAAAAGT
1 TTTTGAAAAGT
119563626 TTGGTTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.07
26 26 0.87
27 2 0.07
ACGTcount: A:0.33, C:0.03, G:0.22, T:0.41
Consensus pattern (25 bp):
TTTTGAAAAGTACTTTTGAGAAGTC
Found at i:119568090 original size:29 final size:29
Alignment explanation
Indices: 119568020--119568091 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
119568010 AATGATAATA
* *
119568020 AAAGTAAAATTTTATCATTTTAAAGTATT
1 AAAGTATAATTTTATCATTTTAAAGGATT
* ** **
119568049 AAATTATTTTTTTATTTTTTTAAAGGATT
1 AAAGTATAATTTTATCATTTTAAAGGATT
119568078 AAAGTATAATTTTA
1 AAAGTATAATTTTA
119568092 CTATATACTA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.51
Consensus pattern (29 bp):
AAAGTATAATTTTATCATTTTAAAGGATT
Found at i:119569959 original size:22 final size:24
Alignment explanation
Indices: 119569911--119569959 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
119569901 GTAAGGCCCC
*
119569911 TTCTCTTGCTGCTGTTCAATTTCTG
1 TTCTCTTGCTGCTGGT-AATTTCTG
119569936 TTCTCTTGCTGCTGGT-ATTT-TG
1 TTCTCTTGCTGCTGGTAATTTCTG
119569958 TT
1 TT
119569960 TCATTTCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 4 0.17
25 15 0.65
ACGTcount: A:0.06, C:0.20, G:0.18, T:0.55
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTCTG
Found at i:119571554 original size:21 final size:21
Alignment explanation
Indices: 119571529--119571597 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
119571519 TATAATGATT
119571529 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
119571550 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
119571570 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
119571590 ATTATTAT
1 ATTATTAT
119571598 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:119571610 original size:15 final size:14
Alignment explanation
Indices: 119571584--119571614 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
119571574 TATGGTTTTA
119571584 TATTAGATTATTAT
1 TATTAGATTATTAT
119571598 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
119571613 TA
1 TA
119571615 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:119571953 original size:14 final size:14
Alignment explanation
Indices: 119571929--119571961 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
119571919 AAGAATTAAG
119571929 GAAACAAAGAAACA
1 GAAACAAAGAAACA
119571943 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
119571957 GAAAC
1 GAAAC
119571962 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:119574190 original size:16 final size:16
Alignment explanation
Indices: 119574136--119574247 Score: 75
Period size: 16 Copynumber: 6.9 Consensus size: 16
119574126 AGTCGTAATG
119574136 ATGTGTGAGCTGTGTA
1 ATGTGTGAGCTGTGTA
* *
119574152 ATTTGCGAGTCATAGTG--
1 ATGTGTGAG-C-T-GTGTA
119574169 ATGTGTGAGCTGTGTA
1 ATGTGTGAGCTGTGTA
*** *
119574185 ATGTGTGAGCTACAATG
1 ATGTGTGAGCT-GTGTA
* *
119574202 ATGTGCGAGTTGTGTA
1 ATGTGTGAGCTGTGTA
** *
119574218 ATGTGCAAGCTATGTA
1 ATGTGTGAGCTGTGTA
119574234 ATGTGTGAGCTGTG
1 ATGTGTGAGCTGTG
119574248 AAAATATGCA
Statistics
Matches: 70, Mismatches: 20, Indels: 12
0.69 0.20 0.12
Matches are distributed among these distances:
14 3 0.04
15 1 0.01
16 44 0.63
17 18 0.26
18 1 0.01
19 3 0.04
ACGTcount: A:0.22, C:0.09, G:0.34, T:0.35
Consensus pattern (16 bp):
ATGTGTGAGCTGTGTA
Found at i:119574220 original size:33 final size:31
Alignment explanation
Indices: 119574118--119574247 Score: 127
Period size: 33 Copynumber: 4.0 Consensus size: 31
119574108 TGTATATATC
119574118 AATGTGCGAGTCGTAATGATGTGTGAGCTGTGT
1 AATGTGCGAGTC--AATGATGTGTGAGCTGTGT
*
119574151 AATTTGCGAGTCATAGTGATGTGTGAGCTGTGT
1 AATGTGCGAGTCA-A-TGATGTGTGAGCTGTGT
* * *
119574184 AATGTGTGAGCTACAATGATGTGCGAGTTGTGT
1 AATGTGCGAG-T-CAATGATGTGTGAGCTGTGT
* *
119574217 AATGTGCAAG-CTATGTAATGTGTGAGCTGTG
1 AATGTGCGAGTCAATG--ATGTGTGAGCTGTG
119574248 AAAATATGCA
Statistics
Matches: 81, Mismatches: 10, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
30 4 0.05
31 1 0.01
32 13 0.16
33 59 0.73
34 2 0.02
35 2 0.02
ACGTcount: A:0.23, C:0.09, G:0.34, T:0.34
Consensus pattern (31 bp):
AATGTGCGAGTCAATGATGTGTGAGCTGTGT
Found at i:119578166 original size:19 final size:19
Alignment explanation
Indices: 119578119--119578166 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
119578109 ACAATTTAAA
*
119578119 ATATAAAAATTATTAATAT
1 ATATAAAATTTATTAATAT
*
119578138 GTATATAAATTTATTAATAT
1 ATATA-AAATTTATTAATAT
*
119578158 ATGTAAAAT
1 ATATAAAAT
119578167 AACTTTTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
ATATAAAATTTATTAATAT
Found at i:119578279 original size:20 final size:20
Alignment explanation
Indices: 119578254--119578294 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
119578244 AAATATTTTC
119578254 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
*
119578274 AGTAAATCATTTTCCGGAAA
1 AGTAAATCATTTTCCAGAAA
119578294 A
1 A
119578295 CATTTTACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:119580155 original size:23 final size:22
Alignment explanation
Indices: 119580129--119580187 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 22
119580119 AAAATAACCT
119580129 ATTTAAAAATAAAATTTTATAAA
1 ATTTAAAAATAAAATTTTA-AAA
* ** **
119580152 ATTTTAATTTAATCTTTTAAAA
1 ATTTAAAAATAAAATTTTAAAA
119580174 ATTATAAAAATAAA
1 ATT-TAAAAATAAA
119580188 CCATTCAAAT
Statistics
Matches: 26, Mismatches: 9, Indels: 2
0.70 0.24 0.05
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTTAAAAATAAAATTTTAAAA
Found at i:119580179 original size:30 final size:30
Alignment explanation
Indices: 119580077--119580182 Score: 92
Period size: 30 Copynumber: 3.5 Consensus size: 30
119580067 TTAATTTCTC
*
119580077 TTAAAAATAATAAAATTTTAATTTAATCTT
1 TTAAAAATTATAAAATTTTAATTTAATCTT
* * **
119580107 TTAAAAATTATAAAA-ATAACCTATTTAA--AA
1 TTAAAAATTATAAAATTTTA---ATTTAATCTT
* *
119580137 ATAAAATTTTATAAAATTTTAATTTAATCTT
1 TTAAAA-ATTATAAAATTTTAATTTAATCTT
119580168 TTAAAAATTATAAAA
1 TTAAAAATTATAAAA
119580183 ATAAACCATT
Statistics
Matches: 56, Mismatches: 13, Indels: 14
0.67 0.16 0.17
Matches are distributed among these distances:
29 8 0.14
30 27 0.48
31 13 0.23
32 8 0.14
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (30 bp):
TTAAAAATTATAAAATTTTAATTTAATCTT
Found at i:119586190 original size:12 final size:13
Alignment explanation
Indices: 119586167--119586195 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
119586157 TATAAATTAC
119586167 AAACATAAAAAAA
1 AAACATAAAAAAA
119586180 AAACA-AAAAAAA
1 AAACATAAAAAAA
119586192 AAAC
1 AAAC
119586196 CTTCAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.03
Consensus pattern (13 bp):
AAACATAAAAAAA
Found at i:119594318 original size:40 final size:39
Alignment explanation
Indices: 119594263--119594370 Score: 146
Period size: 39 Copynumber: 2.7 Consensus size: 39
119594253 AGTTACCATT
* *
119594263 TCAGGAACAAATCCTATCCATTTTATATATT-TCTAGTGAA
1 TCAGGAATAAATCCTATTCATTTTA-AT-TTCTCTAGTGAA
* *
119594303 TCAGGAATAAATCCTATTCACTTTAATTTCTTTAGTGAA
1 TCAGGAATAAATCCTATTCATTTTAATTTCTCTAGTGAA
119594342 TCAGGAATAAATCCTATTCACTTTTAATT
1 TCAGGAATAAATCCTATTCA-TTTTAATT
119594371 CTCGAGAAGG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 30 0.49
40 29 0.48
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (39 bp):
TCAGGAATAAATCCTATTCATTTTAATTTCTCTAGTGAA
Found at i:119595242 original size:4 final size:4
Alignment explanation
Indices: 119595233--119595326 Score: 52
Period size: 4 Copynumber: 22.8 Consensus size: 4
119595223 ATTTCTCCCT
** *
119595233 TTTC TTTC TTTCCC TTT- TTTC TTTC TTTC TTTC TCCCC TGT- TTTC TTTC
1 TTTC TTTC TTT--C TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTTC TTTC
* *
119595282 GTTTC TATTC TGTTC -TTC -TTC TTTT TTTC TTTC TTATG TTTC TTT
1 -TTTC T-TTC T-TTC TTTC TTTC TTTC TTTC TTTC TT-TC TTTC TTT
119595327 TGTTTATTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
3 11 0.15
4 40 0.56
5 16 0.23
6 4 0.06
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:119595266 original size:25 final size:25
Alignment explanation
Indices: 119595233--119595316 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 25
119595223 ATTTCTCCCT
119595233 TTTCTTTCTTTCCCTTTTTTCTTTC
1 TTTCTTTCTTTCCCTTTTTTCTTTC
* *
119595258 TTTCTTTC-TCCCCTGTTTTCTTTC
1 TTTCTTTCTTTCCCTTTTTTCTTTC
*
119595282 GTTTCTATTCTGTTCTTCTTCTTTT-TTTC
1 -TTTCT-TTCT-TTC-CCTT-TTTTCTTTC
119595311 TTTCTT
1 TTTCTT
119595317 ATGTTTCTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
24 14 0.29
25 13 0.27
26 3 0.06
27 1 0.02
28 7 0.15
29 6 0.12
30 4 0.08
ACGTcount: A:0.01, C:0.26, G:0.04, T:0.69
Consensus pattern (25 bp):
TTTCTTTCTTTCCCTTTTTTCTTTC
Found at i:119595503 original size:8 final size:8
Alignment explanation
Indices: 119595490--119595520 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
119595480 TTAATATAAT
119595490 ATAATATA
1 ATAATATA
119595498 ATAATATA
1 ATAATATA
119595506 ATAATATA
1 ATAATATA
119595514 ATAATAT
1 ATAATAT
119595521 TTACTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATAATATA
Found at i:119595503 original size:13 final size:13
Alignment explanation
Indices: 119595481--119595516 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
119595471 TTTATTTAAT
119595481 TAATATAATATAA
1 TAATATAATATAA
119595494 T-ATAATAATATAA
1 TAAT-ATAATATAA
119595507 TAATATAATA
1 TAATATAATA
119595517 ATATTTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 2 0.10
13 17 0.81
14 2 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:119596797 original size:26 final size:25
Alignment explanation
Indices: 119596752--119596812 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
119596742 TGAAACAGTA
* *
119596752 AAAGAAATATATTAACAAATAATAT
1 AAAGATATATATTAACAAATAACAT
119596777 AAAGATATATATATATA-AAATAACAT
1 AAAGATATATAT-TA-ACAAATAACAT
119596803 AGAA-ATATAT
1 A-AAGATATAT
119596813 GAATAGTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 11 0.35
26 17 0.55
27 3 0.10
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (25 bp):
AAAGATATATATTAACAAATAACAT
Found at i:119597131 original size:15 final size:15
Alignment explanation
Indices: 119597094--119597132 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
119597084 ACACACACAT
*
119597094 ATATATATATATTTA
1 ATATATATATATATA
* *
119597109 AAACATATATATATA
1 ATATATATATATATA
119597124 ATATATATA
1 ATATATATA
119597133 AATTTTATAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATATATATATATA
Found at i:119600848 original size:20 final size:20
Alignment explanation
Indices: 119600811--119600853 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
119600801 ATCATATGAT
119600811 TTTATTTAAAATTATTAA-A
1 TTTATTTAAAATTATTAATA
* *
119600830 TTTATTATAAGATTTTTAATA
1 TTTATT-TAAAATTATTAATA
119600851 TTT
1 TTT
119600854 GGAAAATCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 10 0.50
21 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTATTTAAAATTATTAATA
Found at i:119603882 original size:132 final size:130
Alignment explanation
Indices: 119603497--119603883 Score: 447
Period size: 131 Copynumber: 2.9 Consensus size: 130
119603487 ATAAGTATTC
*
119603497 CTTTAAAAATTCTTCAAAACG-AAGACAAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTA
1 CTTTAAAAATTCTTCAAAACGAAAGA-AAG-TTCGATGTTTGGCAATTCGCGGAATCGTGCCCTA
* *
119603561 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGTATATCGCTTCGAAATTTCATTCAT
64 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAAATTTCATTCAT
*
119603626 GT
129 AT
* * * * * * * *
119603628 CTTTTAAAATTCTTCCAAACGAGGACGACA-TTCGATATTTAGTAATTCACGGAATCGTGCCCTA
1 CTTTAAAAATTCTTCAAAACGA--AAGAAAGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTA
* *
119603692 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAGTATCCCTTC-AAGATTTCATTTA
64 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAA-ATTTCATTCA
119603756 TAT
128 TAT
* * * *
119603759 CTTCTAAAAACTCTTTAAAACGAAAGAAATGTTCGATGTTTGGCAATTCGGGGAATAGTGCCCTA
1 CTT-TAAAAATTCTTCAAAACGAAAGAAA-GTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTA
* * * * * * * * *
119603824 TCGTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATTGAATATCTCTTCGGAATTTCA
64 ACGTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAAATTTCA
119603884 CTCGTGTTTT
Statistics
Matches: 212, Mismatches: 36, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
130 6 0.03
131 110 0.52
132 91 0.43
133 2 0.01
134 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (130 bp):
CTTTAAAAATTCTTCAAAACGAAAGAAAGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAAC
GTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCGAAATTTCATTCATAT
Found at i:119604724 original size:101 final size:101
Alignment explanation
Indices: 119604536--119604746 Score: 261
Period size: 101 Copynumber: 2.1 Consensus size: 101
119604526 TGATTAGTAA
*
119604536 AAAATAAGTAAAATAAAAATAAAAGAGATTTTAAAATTGAAAAGTTAAATTAAAACTAAAACTAT
1 AAAATAAGTAAAATAAAAATAAAAGAGATTTTAAAATTGAAAAATTAAATTAAAACTAAAACTAT
* *
119604601 TGAAATAAATACCATTTATAAAATTTTAA-AAATAAAT
66 TGAAAGAAAT--CATTTATAAAAATTTAACAAATAAAT
* *
119604638 AAAATAAGTAAAAT-AAAATAAAAGGGATTTGT-AAATT-AAAAATTAAATTTAAAATTAAAACT
1 AAAATAAGTAAAATAAAAATAAAAGAGATTT-TAAAATTGAAAAATTAAA-TTAAAACTAAAACT
*
119604700 ATTGAAAGAAAT-ATTTCAATTAAAAATTTAACAAATCAAT
64 ATTGAAAGAAATCATTT--A-TAAAAATTTAACAAATAAAT
*
119604740 AAGATAA
1 AAAATAA
119604747 AAAGTTAGCG
Statistics
Matches: 96, Mismatches: 7, Indels: 12
0.83 0.06 0.10
Matches are distributed among these distances:
98 4 0.04
100 10 0.10
101 54 0.56
102 28 0.29
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (101 bp):
AAAATAAGTAAAATAAAAATAAAAGAGATTTTAAAATTGAAAAATTAAATTAAAACTAAAACTAT
TGAAAGAAATCATTTATAAAAATTTAACAAATAAAT
Found at i:119608459 original size:16 final size:16
Alignment explanation
Indices: 119608438--119608473 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
119608428 ATAAAAATAT
*
119608438 TTAAATTACTATCTAA
1 TTAAATTAATATCTAA
119608454 TTAAATTAATATCTAA
1 TTAAATTAATATCTAA
119608470 TTAA
1 TTAA
119608474 TCCGTGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAATTAATATCTAA
Found at i:119614156 original size:21 final size:21
Alignment explanation
Indices: 119614130--119614170 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
119614120 AGACAAGCGA
* *
119614130 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
119614151 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
119614171 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:119616360 original size:46 final size:46
Alignment explanation
Indices: 119616293--119616467 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
119616283 TGTAACCCGC
119616293 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
119616339 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
119616389 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
119616432 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
119616468 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:119616413 original size:93 final size:93
Alignment explanation
Indices: 119616301--119616471 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
119616291 GCCCATAAGT
** *
119616301 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
119616366 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
119616394 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
119616459 CGAGTTCGGATGC
66 CGAGCTCGGATGC
119616472 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:119619933 original size:44 final size:44
Alignment explanation
Indices: 119619831--119619991 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
119619821 GTCGATGCCG
* * *
119619831 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
119619877 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
119619921 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
119619967 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
119619992 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:119620008 original size:46 final size:43
Alignment explanation
Indices: 119619874--119620036 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
119619864 CCGTGCTGAC
*
119619874 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
119619918 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
119619964 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
119620010 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
119620037 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:119622628 original size:46 final size:46
Alignment explanation
Indices: 119622561--119622735 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
119622551 TGTAACCCGC
119622561 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
119622607 CCATAAGTGAACTCGGACTCAACTCATCGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * ** *
119622657 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
119622700 CCATAAGTGATCTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
119622736 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:119622681 original size:93 final size:93
Alignment explanation
Indices: 119622569--119622739 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
119622559 GCCCATAAGT
** *
119622569 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC-A
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
119622633 TCGAGCTCGGATGCCTAGTTACATCTCAC
66 -CGAGCTCGGATGCCTAGTTACATCTCAC
*
119622662 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGATCTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
*
119622727 CGAGTTCGGATGC
66 CGAGCTCGGATGC
119622740 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:119629649 original size:11 final size:12
Alignment explanation
Indices: 119629616--119629649 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
119629606 AGACAGGAAA
119629616 AAATATATTTA-
1 AAATATATTTAT
119629627 AAATATATTTAT
1 AAATATATTTAT
119629639 AAA-ATATTTAT
1 AAATATATTTAT
119629650 TTAATAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 19 0.86
12 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AAATATATTTAT
Found at i:119632848 original size:15 final size:16
Alignment explanation
Indices: 119632828--119632860 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
119632818 ATATATATTT
119632828 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
119632843 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
119632860 T
1 T
119632861 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:119632946 original size:22 final size:22
Alignment explanation
Indices: 119632907--119632965 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
119632897 GTTTTAAGAA
*
119632907 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
119632928 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
119632950 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
119632966 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:119632982 original size:26 final size:24
Alignment explanation
Indices: 119632936--119632984 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
119632926 ATTTGTTTTA
*
119632936 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
119632960 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
119632985 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:119632996 original size:26 final size:26
Alignment explanation
Indices: 119632939--119632997 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
119632929 TGTTTTAATA
*
119632939 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
119632964 TTGATTTATTATATTTTTAAA-ATTTT
1 TTTATTTATTATATTTTTAAATA-TAT
119632990 TTTATTTA
1 TTTATTTA
119632998 ATTAAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:119640666 original size:33 final size:33
Alignment explanation
Indices: 119640624--119640692 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
119640614 AAAATCAGAG
119640624 AAAGAAAAAGTAACAGGCTTACATAATACACTC
1 AAAGAAAAAGTAACAGGCTTACATAATACACTC
*
119640657 AAAGAAAAAGTAAGAGGCTTACATAATACACTC
1 AAAGAAAAAGTAACAGGCTTACATAATACACTC
119640690 AAA
1 AAA
119640693 CCTGACAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.54, C:0.16, G:0.13, T:0.17
Consensus pattern (33 bp):
AAAGAAAAAGTAACAGGCTTACATAATACACTC
Found at i:119647689 original size:16 final size:17
Alignment explanation
Indices: 119647665--119647710 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
119647655 TTATAATTTA
119647665 TTAAATAAAA-ATTATT
1 TTAAATAAAATATTATT
*
119647681 TTAATTAAAATATTA-T
1 TTAAATAAAATATTATT
* *
119647697 CTCAATAAAATATT
1 TTAAATAAAATATT
119647711 TAAATTTCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 21 0.84
17 4 0.16
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAAATAAAATATTATT
Found at i:119654209 original size:1 final size:1
Alignment explanation
Indices: 119654198--119654227 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
119654188 GCCTTTCTTG
*
119654198 AAAACAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
119654228 TCATATCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:119654530 original size:403 final size:403
Alignment explanation
Indices: 119653783--119654587 Score: 1594
Period size: 403 Copynumber: 2.0 Consensus size: 403
119653773 TTAATCATGG
119653783 TAGCCTTTCTTGAAAACAAAAAAAAAAAAAAAAAAAAAAAATCATATCAGATTTCCACTGCTTAG
1 TAGCCTTTCTTGAAAACAAAAAAAAAAAAAAAAAAAAAAAATCATATCAGATTTCCACTGCTTAG
119653848 TGCTCTCATCAAATAAATCACACACTGAATAAAATACTAAAAAAATCCAAACACTTCTTTTTTTT
66 TGCTCTCATCAAATAAATCACACACTGAATAAAATACTAAAAAAATCCAAACACTTCTTTTTTTT
119653913 CAATCTCCGACGGGCTTTTTTTTTTAATTTTTATCTACAATTAAAATACTAACAAAAATTAAAAA
131 CAATCTCCGACGGGCTTTTTTTTTTAATTTTTATCTACAATTAAAATACTAACAAAAATTAAAAA
119653978 GTGATTGATTGTCCAAGTAGGATCGGCCCATGGAACCATATTGGATCCACGTGACAACAGCCTGT
196 GTGATTGATTGTCCAAGTAGGATCGGCCCATGGAACCATATTGGATCCACGTGACAACAGCCTGT
119654043 TATCCTTCCACTGCCAAGAGGGGGAAGTTTTCGCTGCTCTGTGAAACCAGCCTCACGCAGTGCCT
261 TATCCTTCCACTGCCAAGAGGGGGAAGTTTTCGCTGCTCTGTGAAACCAGCCTCACGCAGTGCCT
119654108 TCCACTCTAGGAGCCACAAGACCCGAGCTTTCGCTCAAGACATATAGCTCAACTCCTGGCTTGGA
326 TCCACTCTAGGAGCCACAAGACCCGAGCTTTCGCTCAAGACATATAGCTCAACTCCTGGCTTGGA
119654173 ACGGGCAGGTCAT
391 ACGGGCAGGTCAT
119654186 TAGCCTTTCTTGAAAACAAAAAAAAAAAAAAAAAAAAAAAAATCATATCAGATTTCCACTGCTTA
1 TAGCCTTTCTTGAAAAC-AAAAAAAAAAAAAAAAAAAAAAAATCATATCAGATTTCCACTGCTTA
119654251 GTGCTCTCATCAAATAAATCACACACTGAATAAAATACTAAAAAAATCCAAACACTTC-TTTTTT
65 GTGCTCTCATCAAATAAATCACACACTGAATAAAATACTAAAAAAATCCAAACACTTCTTTTTTT
119654315 TCAATCTCCGACGGGCTTTTTTTTTTAATTTTTATCTACAATTAAAATACTAACAAAAATTAAAA
130 TCAATCTCCGACGGGCTTTTTTTTTTAATTTTTATCTACAATTAAAATACTAACAAAAATTAAAA
119654380 AGTGATTGATTGTCCAAGTAGGATCGGCCCATGGAACCATATTGGATCCACGTGACAACAGCCTG
195 AGTGATTGATTGTCCAAGTAGGATCGGCCCATGGAACCATATTGGATCCACGTGACAACAGCCTG
119654445 TTATCCTTCCACTGCCAAGAGGGGGAAGTTTTCGCTGCTCTGTGAAACCAGCCTCACGCAGTGCC
260 TTATCCTTCCACTGCCAAGAGGGGGAAGTTTTCGCTGCTCTGTGAAACCAGCCTCACGCAGTGCC
119654510 TTCCACTCTAGGAGCCACAAGACCCGAGCTTTCGCTCAAGACATATAGCTCAACTCCTGGCTTGG
325 TTCCACTCTAGGAGCCACAAGACCCGAGCTTTCGCTCAAGACATATAGCTCAACTCCTGGCTTGG
119654575 AACGGGCAGGTCA
390 AACGGGCAGGTCA
119654588 GAAGTGAGCC
Statistics
Matches: 401, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
403 296 0.74
404 105 0.26
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (403 bp):
TAGCCTTTCTTGAAAACAAAAAAAAAAAAAAAAAAAAAAAATCATATCAGATTTCCACTGCTTAG
TGCTCTCATCAAATAAATCACACACTGAATAAAATACTAAAAAAATCCAAACACTTCTTTTTTTT
CAATCTCCGACGGGCTTTTTTTTTTAATTTTTATCTACAATTAAAATACTAACAAAAATTAAAAA
GTGATTGATTGTCCAAGTAGGATCGGCCCATGGAACCATATTGGATCCACGTGACAACAGCCTGT
TATCCTTCCACTGCCAAGAGGGGGAAGTTTTCGCTGCTCTGTGAAACCAGCCTCACGCAGTGCCT
TCCACTCTAGGAGCCACAAGACCCGAGCTTTCGCTCAAGACATATAGCTCAACTCCTGGCTTGGA
ACGGGCAGGTCAT
Found at i:119663521 original size:16 final size:16
Alignment explanation
Indices: 119663492--119663524 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
119663482 GAAATTATAC
119663492 AAAATTATTAAAAAAT
1 AAAATTATTAAAAAAT
119663508 AAAA-TATTATAAAAAT
1 AAAATTATTA-AAAAAT
119663524 A
1 A
119663525 TATACAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATTATTAAAAAAT
Found at i:119663851 original size:11 final size:11
Alignment explanation
Indices: 119663837--119663870 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
119663827 CTTTAAACCC
119663837 TCTTTTTATAA
1 TCTTTTTATAA
119663848 TCTTTTTATAA
1 TCTTTTTATAA
*
119663859 TATTTTTATAA
1 TCTTTTTATAA
119663870 T
1 T
119663871 TTTAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (11 bp):
TCTTTTTATAA
Found at i:119666545 original size:30 final size:33
Alignment explanation
Indices: 119666511--119666574 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 33
119666501 AGTTTATATA
*
119666511 TTTATAATTTTTAAAG-GATT-AAAT-TAATTT
1 TTTATAACTTTTAAAGAGATTAAAATATAATTT
**
119666541 TTTATTGCTTTTAAAGAGATTAAAATATAATTT
1 TTTATAACTTTTAAAGAGATTAAAATATAATTT
119666574 T
1 T
119666575 ATTCTTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 13 0.46
31 4 0.14
32 4 0.14
33 7 0.25
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.52
Consensus pattern (33 bp):
TTTATAACTTTTAAAGAGATTAAAATATAATTT
Found at i:119666575 original size:31 final size:28
Alignment explanation
Indices: 119666519--119666585 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 28
119666509 TATTTATAAT
119666519 TTTTAAAGGATTAAATTAATTTTTTATTGC
1 TTTTAAAGGATTAAATTAA-TTTTTATT-C
119666549 TTTTAAAGAGATTAAAATATAA-TTTTATTC
1 TTTTAAAG-GATT-AAAT-TAATTTTTATTC
119666579 TTATTAA
1 TT-TTAA
119666586 TTTAAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
30 11 0.33
31 15 0.45
32 4 0.12
33 3 0.09
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (28 bp):
TTTTAAAGGATTAAATTAATTTTTATTC
Found at i:119681113 original size:3 final size:3
Alignment explanation
Indices: 119681105--119681136 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
119681095 TAAGCCTACT
119681105 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
119681137 TTTTCTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:119684151 original size:87 final size:89
Alignment explanation
Indices: 119684024--119684187 Score: 242
Period size: 88 Copynumber: 1.9 Consensus size: 89
119684014 GAAAATTTTC
*
119684024 AAAAATTAAAATAAAATTATTAGCATAATACAGAACTTCAA-ACAATGCCTTTGACCATAGAGAC
1 AAAAATTAAAATAAAATTATTAGCATAATACACAACTTCAATACAATGCCTTTGACCATAGAGAC
*
119684088 ATAGGGGTTTGATTTTTGAAAATT
66 AAAGGGGTTTGATTTTTGAAAATT
* * * * * *
119684112 AAAAATTAAAA-AAATTTATTAGCATGATAGACAGCTTCAATCCAATGCCTTTGACCATGGAGAC
1 AAAAATTAAAATAAAATTATTAGCATAATACACAACTTCAATACAATGCCTTTGACCATAGAGAC
119684176 AAAGGGGTTTGA
66 AAAGGGGTTTGA
119684188 ATTTAGGGTT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
87 24 0.36
88 43 0.64
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.29
Consensus pattern (89 bp):
AAAAATTAAAATAAAATTATTAGCATAATACACAACTTCAATACAATGCCTTTGACCATAGAGAC
AAAGGGGTTTGATTTTTGAAAATT
Found at i:119686509 original size:2 final size:2
Alignment explanation
Indices: 119686504--119686558 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
119686494 AACTAATGGC
* * *
119686504 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
119686543 AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT
119686559 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:119686536 original size:22 final size:23
Alignment explanation
Indices: 119686504--119686555 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
119686494 AACTAATGGC
*
119686504 ATATATACATAATATATATATAT
1 ATATACACATAATATATATATAT
119686527 A-ATACACATAATATATATATAT
1 ATATACACATAATATATATATAT
119686549 ATATACA
1 ATATACA
119686556 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATACACATAATATATATATAT
Found at i:119687092 original size:11 final size:12
Alignment explanation
Indices: 119687076--119687112 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
119687066 AGAAAAAAAA
119687076 GGAAGAGAG-AG
1 GGAAGAGAGAAG
119687087 GGAAGAGAGAAG
1 GGAAGAGAGAAG
119687099 GG-AGAGAGAAG
1 GGAAGAGAGAAG
119687110 GGA
1 GGA
119687113 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:119687113 original size:11 final size:11
Alignment explanation
Indices: 119687074--119687123 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
119687064 AAAGAAAAAA
*
119687074 AAGGAAGAGAG
1 AAGGGAGAGAG
119687085 -AGGGAAGAGAG
1 AAGGG-AGAGAG
119687096 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
119687107 AAGGGAGGGGG
1 AAGGGAGAGAG
119687118 AAGGGA
1 AAGGGA
119687124 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:119687419 original size:13 final size:14
Alignment explanation
Indices: 119687387--119687419 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
119687377 TTTTGGTTTT
119687387 TTTTTTGCTGGAAA
1 TTTTTTGCTGGAAA
119687401 TTTTTT-CTGGAAA
1 TTTTTTGCTGGAAA
119687414 TTTTTT
1 TTTTTT
119687420 TTTGGTGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.18, C:0.06, G:0.15, T:0.61
Consensus pattern (14 bp):
TTTTTTGCTGGAAA
Found at i:119687420 original size:14 final size:15
Alignment explanation
Indices: 119687386--119687420 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
119687376 TTTTTGGTTT
119687386 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
119687401 -TTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
119687414 TTTTTTT
1 TTTTTTT
119687421 TTGGTGCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:119687429 original size:33 final size:32
Alignment explanation
Indices: 119687383--119687456 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
119687373 TTTTTTTTGG
119687383 TTTTTTTTT-TGCTGGAAATTTTTT-CTGGAAA
1 TTTTTTTTTGTGCTGG-AATTTTTTGCTGGAAA
**
119687414 TTTTTTTTTGGTGCTGGAATTTTTTGCTGGATT
1 TTTTTTTTT-GTGCTGGAATTTTTTGCTGGAAA
119687447 TTTTTTTTTG
1 TTTTTTTTTG
119687457 CTTCCCCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
31 9 0.24
32 9 0.24
33 20 0.53
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (32 bp):
TTTTTTTTTGTGCTGGAATTTTTTGCTGGAAA
Found at i:119687925 original size:34 final size:35
Alignment explanation
Indices: 119687858--119687962 Score: 185
Period size: 34 Copynumber: 3.0 Consensus size: 35
119687848 GGGGTGTGTG
*
119687858 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
119687893 GTGGTGCTGGTGGCAGACAGCAT-GGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
119687927 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
119687962 A
1 A
119687963 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 33 0.50
35 33 0.50
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:119688747 original size:48 final size:50
Alignment explanation
Indices: 119688671--119688817 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
119688661 ATATGACCTA
**
119688671 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
119688719 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
119688773 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
119688818 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:119689053 original size:147 final size:140
Alignment explanation
Indices: 119688874--119689462 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
119688864 TCAACTCACC
119688874 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
119688939 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
119689004 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
119689022 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119689087 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
119689152 CCTCTCGCCA
131 CCTCTCGCAA
*
119689162 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
119689227 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
119689292 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
119689309 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119689374 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
119689439 CCTCTCGCAA
131 CCTCTCGCAA
*
119689449 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
119689463 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:119689086 original size:70 final size:70
Alignment explanation
Indices: 119688973--119689462 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
119688963 CATAAATTGA
*
119688973 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119689038 AACAT
66 AACAT
*
119689043 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119689108 AACAT
66 AACAT
*
119689113 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119689178 AACATAAATT
66 AAC----A-T
*
119689188 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
119689253 GAAACAT
64 GAAACAT
*
119689260 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119689325 AACAT
66 AACAT
119689330 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119689395 AACAT
66 AACAT
*
119689400 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
119689463 CTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:119689158 original size:217 final size:217
Alignment explanation
Indices: 119688874--119689462 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
119688864 TCAACTCACC
119688874 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
119688939 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
119689004 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
119689069 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
119689092 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119689157 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
119689222 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
119689287 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
119689309 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
119689374 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
119689432 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
119689463 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:119696772 original size:48 final size:50
Alignment explanation
Indices: 119696701--119696833 Score: 173
Period size: 54 Copynumber: 2.6 Consensus size: 50
119696691 TCTAAACATT
119696701 TCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-AGG-TACAACTCACC
1 TCTCGCAATATGAGTTGATTTTTGAAAAACAATAACAGGCT-CAACTCACC
* *
119696749 TCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAACAGGCTCAACTCACC
1 TCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAACAGGCTCAACTCACC
*
119696803 TCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 TCTCGCAATATGAGTTGATTTTTGAAAAACA
119696834 GGAATTGGAA
Statistics
Matches: 73, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
48 26 0.36
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.51
55 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (50 bp):
TCTCGCAATATGAGTTGATTTTTGAAAAACAATAACAGGCTCAACTCACC
Found at i:119697069 original size:147 final size:140
Alignment explanation
Indices: 119696890--119697478 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
119696880 TCAACTCACC
119696890 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
119696955 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
119697020 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
119697038 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119697103 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
119697168 CCTCTCGCCA
131 CCTCTCGCAA
*
119697178 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
119697243 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
119697308 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
119697325 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119697390 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
119697455 CCTCTCGCAA
131 CCTCTCGCAA
*
119697465 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
119697479 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:119697102 original size:70 final size:70
Alignment explanation
Indices: 119696989--119697478 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
119696979 CATAAATTGA
*
119696989 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119697054 AACAT
66 AACAT
*
119697059 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119697124 AACAT
66 AACAT
*
119697129 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119697194 AACATAAATT
66 AAC----A-T
*
119697204 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
119697269 GAAACAT
64 GAAACAT
*
119697276 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119697341 AACAT
66 AACAT
119697346 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119697411 AACAT
66 AACAT
*
119697416 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
119697479 CTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:119697174 original size:217 final size:217
Alignment explanation
Indices: 119696890--119697478 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
119696880 TCAACTCACC
119696890 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
119696955 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
119697020 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
119697085 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
119697108 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119697173 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
119697238 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
119697303 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
119697325 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
119697390 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
119697448 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
119697479 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:119702437 original size:31 final size:28
Alignment explanation
Indices: 119702356--119702437 Score: 69
Period size: 31 Copynumber: 2.8 Consensus size: 28
119702346 TATATACATA
119702356 TGTATATAA-AATATACACTAATAAATAAT
1 TGTA-ATAATAATATACAC-AATAAATAAT
* * *
119702385 AGTTATAATAATACTA-GCAATAGTAATAATT
1 TGTAATAATAATA-TACACAATA--AATAA-T
119702416 TGTAATAATAATATACACAATA
1 TGTAATAATAATATACACAATA
119702438 TGGAATTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
28 8 0.20
29 7 0.17
30 9 0.22
31 17 0.41
ACGTcount: A:0.52, C:0.07, G:0.06, T:0.34
Consensus pattern (28 bp):
TGTAATAATAATATACACAATAAATAAT
Found at i:119702524 original size:2 final size:2
Alignment explanation
Indices: 119702519--119702565 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
119702509 AACTAATGGC
* * *
119702519 AT AT AT AC AT A- AT AT AT AT AT AT AC AC AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119702559 AT AT AT A
1 AT AT AT A
119702566 CTATTAGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:119702547 original size:19 final size:19
Alignment explanation
Indices: 119702519--119702561 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
119702509 AACTAATGGC
*
119702519 ATATATACATAATATATAT
1 ATATACACATAATATATAT
119702538 ATATACACATAATATATAT
1 ATATACACATAATATATAT
119702557 ATATA
1 ATATA
119702562 TATACTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATACACATAATATATAT
Found at i:119703089 original size:23 final size:23
Alignment explanation
Indices: 119703063--119703114 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
119703053 TCATTTGGAG
119703063 GAGGGAAAGAAAAAAGGAAGAGA
1 GAGGGAAAGAAAAAAGGAAGAGA
* * *
119703086 GAGGG-AAGAGAGAAGGGAGAGA
1 GAGGGAAAGAAAAAAGGAAGAGA
119703108 GAAGGGA
1 G-AGGGA
119703115 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (23 bp):
GAGGGAAAGAAAAAAGGAAGAGA
Found at i:119703092 original size:11 final size:12
Alignment explanation
Indices: 119703078--119703114 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
119703068 AAAGAAAAAA
119703078 GGAAGAGAG-AG
1 GGAAGAGAGAAG
119703089 GGAAGAGAGAAG
1 GGAAGAGAGAAG
119703101 GG-AGAGAGAAG
1 GGAAGAGAGAAG
119703112 GGA
1 GGA
119703115 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:119703115 original size:11 final size:11
Alignment explanation
Indices: 119703076--119703125 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
119703066 GGAAAGAAAA
*
119703076 AAGGAAGAGAG
1 AAGGGAGAGAG
119703087 -AGGGAAGAGAG
1 AAGGG-AGAGAG
119703098 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
119703109 AAGGGAGGGGG
1 AAGGGAGAGAG
119703120 AAGGGA
1 AAGGGA
119703126 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:119703420 original size:14 final size:15
Alignment explanation
Indices: 119703385--119703420 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
119703375 TTTTTGTTTT
119703385 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
119703400 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
119703414 TTTTTTT
1 TTTTTTT
119703421 TTGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:119703421 original size:15 final size:16
Alignment explanation
Indices: 119703384--119703421 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
119703374 TTTTTTGTTT
119703384 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
119703400 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
119703414 TTTTTTTT
1 TTTTTTTT
119703422 TGTGCTGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:119703434 original size:32 final size:33
Alignment explanation
Indices: 119703381--119703455 Score: 107
Period size: 32 Copynumber: 2.3 Consensus size: 33
119703371 GTTTTTTTTG
* *
119703381 TTTTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
**
119703414 TTTTTTTTTGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
119703446 TTTTTTTTTG
1 TTTTTTTTTG
119703456 CTTCCCCTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
32 23 0.61
33 15 0.39
ACGTcount: A:0.12, C:0.05, G:0.17, T:0.65
Consensus pattern (33 bp):
TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:119703448 original size:13 final size:13
Alignment explanation
Indices: 119703417--119703450 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
119703407 CTGGAAATTT
119703417 TTTTTTGTGCTGGA
1 TTTTTT-TGCTGGA
*
119703431 ATTTTTTGCTGGA
1 TTTTTTTGCTGGA
119703444 TTTTTTT
1 TTTTTTT
119703451 TTTTGCTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.09, C:0.06, G:0.21, T:0.65
Consensus pattern (13 bp):
TTTTTTTGCTGGA
Found at i:119703449 original size:14 final size:15
Alignment explanation
Indices: 119703384--119703451 Score: 63
Period size: 14 Copynumber: 4.5 Consensus size: 15
119703374 TTTTTTGTTT
119703384 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
119703399 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
119703414 TTTTTTTTTGTGCTGGAA
1 --TTTTTTT-TGCTGGAA
119703432 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
119703444 TTTTTTTT
1 TTTTTTTT
119703452 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 15 0.34
15 9 0.20
17 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.18, T:0.63
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:119703924 original size:34 final size:35
Alignment explanation
Indices: 119703857--119703961 Score: 185
Period size: 34 Copynumber: 3.0 Consensus size: 35
119703847 GGGGTGTGTG
*
119703857 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
119703892 GTGGTGCTGGTGGCAGACAGCAT-GGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
119703926 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
119703961 A
1 A
119703962 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 33 0.50
35 33 0.50
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:119704745 original size:48 final size:50
Alignment explanation
Indices: 119704669--119704815 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
119704659 ATATGACCTA
**
119704669 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
119704717 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
119704771 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
119704816 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:119705084 original size:70 final size:70
Alignment explanation
Indices: 119704971--119705458 Score: 845
Period size: 70 Copynumber: 6.9 Consensus size: 70
119704961 CATAAATTGA
*
119704971 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119705036 AACAT
66 AACAT
*
119705041 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119705106 AACAT
66 AACAT
*
119705111 AAATTGAAATTA-CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119705175 AACATAAATT
66 AAC----A-T
*
119705185 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
119705250 GAAACAT
64 GAAACAT
*
119705257 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119705322 AACAT
66 AACAT
119705327 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT-TCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
119705391 AACAT
66 AACAT
*
119705396 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
119705459 CTGTCACTTG
Statistics
Matches: 399, Mismatches: 10, Indels: 18
0.93 0.02 0.04
Matches are distributed among these distances:
69 122 0.31
70 208 0.52
72 1 0.00
73 2 0.01
74 1 0.00
76 12 0.03
77 53 0.13
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:119705258 original size:216 final size:217
Alignment explanation
Indices: 119704872--119705458 Score: 1075
Period size: 216 Copynumber: 2.7 Consensus size: 217
119704862 TCAACTCACC
119704872 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
119704937 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
119705002 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
119705067 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
119705090 TATGAGTTGATTTTGAAACATAAATTGAAATTA-CTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
119705154 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
119705219 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
119705284 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
119705306 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT-T
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
119705370 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
119705428 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
119705459 CTGTCACTTG
Statistics
Matches: 365, Mismatches: 3, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
209 61 0.17
211 1 0.00
212 1 0.00
216 240 0.66
217 52 0.14
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:119705315 original size:286 final size:289
Alignment explanation
Indices: 119704894--119705458 Score: 994
Period size: 286 Copynumber: 2.0 Consensus size: 289
119704884 TTTGAAACAT
*
119704894 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
*
119704959 AACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATG
66 AAC---AATT-AAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
119705024 AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCA
127 AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT-TCGCA
119705089 ATATGAGTTGATTTTGAAACATAAATTGAAATTA-CTCAACGTGTCTTGAGGCTCAACTCACCTC
191 ATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
119705153 TCGCCATATGAGTTGATTTTGAAACATAAATTGA
256 TCGCAATATGAGTTGATTTTGAAACATAAATTGA
*
119705187 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
*
119705252 AAC-A-T-AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTT
66 AACAATTAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
119705314 GATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTTCGCAATATG
131 GATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTTCGCAATATG
119705379 AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
196 AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
*
119705444 ATGTGAGTTGATTTT
261 ATATGAGTTGATTTT
119705459 CTGTCACTTG
Statistics
Matches: 264, Mismatches: 7, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
285 39 0.15
286 157 0.59
288 1 0.00
289 1 0.00
293 66 0.25
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (289 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAATTAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTTCGCAATATG
AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTGAAACATAAATTGA
Found at i:119717359 original size:19 final size:18
Alignment explanation
Indices: 119717337--119717413 Score: 64
Period size: 21 Copynumber: 3.8 Consensus size: 18
119717327 TAATAATAAT
119717337 ATAAAATAATAATATGTA
1 ATAAAATAATAATATGTA
119717355 CATAAAAATACATAATATGTA
1 -AT-AAAATA-ATAATATGTA
*
119717376 TATATATATAATAAAAGTATGTA
1 -ATA-AAATAAT--AA-TATGTA
119717399 ATAATAATAATAATA
1 ATAA-AATAATAATA
119717414 ATATCTACAA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
19 4 0.08
20 11 0.23
21 17 0.35
22 10 0.21
23 6 0.12
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
ATAAAATAATAATATGTA
Found at i:119717732 original size:22 final size:21
Alignment explanation
Indices: 119717700--119717749 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
119717690 AACTAATGGC
*
119717700 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
119717721 ATAATACACATAATATATATAT
1 AT-ATACACATAATATATATAT
119717743 ATATACA
1 ATATACA
119717750 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:119718283 original size:11 final size:12
Alignment explanation
Indices: 119718267--119718303 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
119718257 AGAAAAAAAA
119718267 GGAAGAGAG-AG
1 GGAAGAGAGAAG
119718278 GGAAGAGAGAAG
1 GGAAGAGAGAAG
119718290 GG-AGAGAGAAG
1 GGAAGAGAGAAG
119718301 GGA
1 GGA
119718304 GGGGAAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:119718304 original size:11 final size:11
Alignment explanation
Indices: 119718265--119718313 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
119718255 AAAGAAAAAA
*
119718265 AAGGAAGAGAG
1 AAGGGAGAGAG
119718276 -AGGGAAGAGAG
1 AAGGG-AGAGAG
119718287 AAGGGAGAGAG
1 AAGGGAGAGAG
*
119718298 AAGGGAG-GGG
1 AAGGGAGAGAG
119718308 AAGGGA
1 AAGGGA
119718314 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 11 0.32
11 19 0.56
12 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:119718603 original size:14 final size:15
Alignment explanation
Indices: 119718568--119718603 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
119718558 TTTTTTGGTT
119718568 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
119718583 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
119718597 TTTTTTT
1 TTTTTTT
119718604 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:119718604 original size:15 final size:16
Alignment explanation
Indices: 119718567--119718605 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
119718557 TTTTTTTGGT
119718567 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
119718583 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
119718597 TTTTTTTTG
1 TTTTTTTTG
119718606 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:119718617 original size:32 final size:31
Alignment explanation
Indices: 119718566--119718640 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
119718556 TTTTTTTTGG
*
119718566 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
**
119718597 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTT--TGCTGGAAATTTTTTGCTGGAAA
119718629 TTTTTTTTTGCT
1 TTTTTTTTTGCT
119718641 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 8 0.21
32 21 0.54
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
Found at i:119718632 original size:14 final size:14
Alignment explanation
Indices: 119718555--119718634 Score: 51
Period size: 15 Copynumber: 5.6 Consensus size: 14
119718545 CGTTCTATTG
*
119718555 TTTTTTTT--TGGT
1 TTTTTTTTGCTGGA
119718567 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGG-A
*
119718582 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG--A
119718597 TTTTTTTTGGTGCTGGA
1 -TTTTTTT--TGCTGGA
*
119718614 -ATTTTTTGCTGGA
1 TTTTTTTTGCTGGA
119718627 TTTTTTTT
1 TTTTTTTT
119718635 TTTGCTTCCC
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
12 8 0.15
13 7 0.13
14 13 0.24
15 14 0.26
16 6 0.11
17 1 0.02
18 1 0.02
19 4 0.07
ACGTcount: A:0.11, C:0.05, G:0.19, T:0.65
Consensus pattern (14 bp):
TTTTTTTTGCTGGA
Found at i:119718637 original size:33 final size:32
Alignment explanation
Indices: 119718566--119718640 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 32
119718556 TTTTTTTTGG
*
119718566 TTTTTTTT-TGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
*
119718597 TTTTTTTTGGTGCTGG-AATTTTTTGCTGG-AT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAA
*
119718628 TTTTTTTTTTGCT
1 TTTTTTTTGTGCT
119718641 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 17 0.44
32 12 0.31
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (32 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:119719080 original size:35 final size:35
Alignment explanation
Indices: 119719041--119719111 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
119719031 GGGGTGTGTG
119719041 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
*
119719076 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
119719111 A
1 A
119719112 GAGGCAAGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.13, G:0.48, T:0.15
Consensus pattern (35 bp):
ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
Found at i:119720087 original size:19 final size:19
Alignment explanation
Indices: 119720063--119720120 Score: 116
Period size: 19 Copynumber: 3.1 Consensus size: 19
119720053 AATATGAACA
119720063 TAGTCAAGTAACTATTTTT
1 TAGTCAAGTAACTATTTTT
119720082 TAGTCAAGTAACTATTTTT
1 TAGTCAAGTAACTATTTTT
119720101 TAGTCAAGTAACTATTTTT
1 TAGTCAAGTAACTATTTTT
119720120 T
1 T
119720121 TTAAAAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.48
Consensus pattern (19 bp):
TAGTCAAGTAACTATTTTT
Found at i:119721342 original size:46 final size:45
Alignment explanation
Indices: 119721282--119721547 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
119721272 TTTGACATGA
* * * * * *
119721282 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
119721328 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
119721374 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
119721420 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
119721466 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
119721504 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
119721548 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:119721511 original size:38 final size:38
Alignment explanation
Indices: 119721460--119721535 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
119721450 ACATTTTATA
119721460 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
119721498 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
119721536 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:119723700 original size:11 final size:11
Alignment explanation
Indices: 119723684--119723735 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
119723674 TATACTAAAT
119723684 AAATAATAATA
1 AAATAATAATA
*
119723695 AAATAAT-ATT
1 AAATAATAATA
* *
119723705 AAATATCTCATA
1 AAATA-ATAATA
*
119723717 AAATATTAATA
1 AAATAATAATA
119723728 AAATAATA
1 AAATAATA
119723736 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:119729561 original size:26 final size:26
Alignment explanation
Indices: 119729543--119729592 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
119729533 TTTTTTTTTT
*
119729543 ATTTTTTTTAATTTGATTTTTTAAAA
1 ATTTTTTTTAATTTGATTTTTTTAAA
119729569 ATTTTTTTTAATTTGATTTTTTTA
1 ATTTTTTTTAATTTGATTTTTTTA
119729593 TTTTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (26 bp):
ATTTTTTTTAATTTGATTTTTTTAAA
Found at i:119729562 original size:13 final size:13
Alignment explanation
Indices: 119729546--119729595 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
119729536 TTTTTTTATT
119729546 TTTTTTAATTTGA
1 TTTTTTAATTTGA
*
119729559 TTTTTTAAAAATT--
1 TTTTTT--AATTTGA
119729572 TTTTTTAATTTGA
1 TTTTTTAATTTGA
*
119729585 TTTTTTTATTT
1 TTTTTTAATTT
119729596 TTAAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
11 4 0.13
13 22 0.73
15 4 0.13
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTTTTAATTTGA
Found at i:119733285 original size:8 final size:8
Alignment explanation
Indices: 119733272--119733312 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
119733262 CTTTTATGTT
119733272 TTATTATA
1 TTATTATA
*
119733280 TTATTAAA
1 TTATTATA
119733288 TTATTATA
1 TTATTATA
*
119733296 TTAATATA
1 TTATTATA
119733304 TTATTATA
1 TTATTATA
119733312 T
1 T
119733313 ATATATACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:119733319 original size:16 final size:15
Alignment explanation
Indices: 119733272--119733318 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
119733262 CTTTTATGTT
*
119733272 TTATTATATTATTAAA
1 TTATTATATTA-TATA
119733288 TTATTATATTAATATA
1 TTATTATATT-ATATA
119733304 TTATTATA-TATATA
1 TTATTATATTATATA
119733318 T
1 T
119733319 ACTTAAGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 6 0.21
15 1 0.03
16 21 0.72
17 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATATTATATA
Found at i:119733319 original size:24 final size:25
Alignment explanation
Indices: 119733276--119733324 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
119733266 TATGTTTTAT
119733276 TATATTATTAAATTATTATA-TTAA
1 TATATTATTAAATTATTATACTTAA
*
119733300 TATATTATTATA-TATATATACTTAA
1 TATATTATTAAATTAT-TATACTTAA
119733325 GTATTAAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 15 0.68
25 4 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TATATTATTAAATTATTATACTTAA
Found at i:119733944 original size:24 final size:24
Alignment explanation
Indices: 119733908--119733954 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
119733898 ATCTTAGACA
*
119733908 TCAAGCAACTCAAAA-ACCATTCAT
1 TCAACCAACTCAAAACA-CATTCAT
*
119733932 TCAACCAATTCAAAACACATTCA
1 TCAACCAACTCAAAACACATTCA
119733955 AATACCTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (24 bp):
TCAACCAACTCAAAACACATTCAT
Found at i:119735287 original size:16 final size:17
Alignment explanation
Indices: 119735263--119735296 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
119735253 TCGTTTTGTT
119735263 TTTAATTAATATT-TTA
1 TTTAATTAATATTATTA
*
119735279 TTTACTTAATATTATTA
1 TTTAATTAATATTATTA
119735296 T
1 T
119735297 AATAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATTAATATTATTA
Found at i:119735325 original size:16 final size:15
Alignment explanation
Indices: 119735285--119735326 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 15
119735275 TTTATTTACT
119735285 TAATATTAT-TATAA
1 TAATATTATATATAA
119735299 TAATA-TA-ATATAA
1 TAATATTATATATAA
119735312 TAATATTTATATATA
1 TAATA-TTATATATA
119735327 TACTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 12 0.50
14 5 0.21
15 2 0.08
16 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAATATTATATATAA
Found at i:119735401 original size:21 final size:20
Alignment explanation
Indices: 119735349--119735395 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 20
119735339 AAGTAATACA
119735349 TATTTTATTAATTTATACATATG
1 TATTTTATT--TTTATACA-ATG
119735372 TATTTTATTTTTATAC-ATG
1 TATTTTATTTTTATACAATG
119735391 TATTT
1 TATTT
119735396 ACTATTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.33
21 7 0.29
23 9 0.38
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (20 bp):
TATTTTATTTTTATACAATG
Found at i:119736056 original size:13 final size:13
Alignment explanation
Indices: 119735999--119736062 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 13
119735989 AGTTCTTCAT
119735999 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
119736012 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
119736025 TGTTTTTGAGAAA-
1 TGCTTTTGA-AAAG
* *
119736038 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
119736051 TGCTTTAGAAAA
1 TGCTTTTGAAAA
119736063 ATTTAAGTGT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
12 2 0.05
13 33 0.87
14 3 0.08
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:119740005 original size:19 final size:18
Alignment explanation
Indices: 119739981--119740022 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
119739971 GTATGTTAAG
119739981 AATTTAGTTCCTATATTTT
1 AATTTA-TTCCTATATTTT
**
119740000 AATTTATTTTTATATTTT
1 AATTTATTCCTATATTTT
119740018 AATTT
1 AATTT
119740023 GATCAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (18 bp):
AATTTATTCCTATATTTT
Found at i:119740047 original size:14 final size:14
Alignment explanation
Indices: 119740005--119740047 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
119739995 ATTTTAATTT
*
119740005 ATTTTTATATTTTA
1 ATTTATATATTTTA
119740019 ATTTGATCA-ATTTTA
1 ATTT-AT-ATATTTTA
119740034 ATTTATATATTTTA
1 ATTTATATATTTTA
119740048 CAAATTAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (14 bp):
ATTTATATATTTTA
Found at i:119745747 original size:5 final size:5
Alignment explanation
Indices: 119745739--119745770 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
119745729 ATATTTGTGA
119745739 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
119745771 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Done.