Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 416 of 427
Found at i:120922612 original size:10 final size:9
Alignment explanation
Indices: 120922594--120922682 Score: 63
Period size: 10 Copynumber: 9.4 Consensus size: 9
120922584 TAAAATTTAA
120922594 AAAATATTT
1 AAAATATTT
120922603 AAAATCATTT
1 AAAAT-ATTT
*
120922613 AAAATATTAA
1 AAAATATT-T
120922623 AAAATATTT
1 AAAATATTT
*
120922632 TAAATCATTT
1 AAAAT-ATTT
* *
120922642 TAAATGTTTT
1 AAAAT-ATTT
* *
120922652 ATAATATTA
1 AAAATATTT
120922661 AAAATATATT
1 AAAATAT-TT
*
120922671 -TAATATTT
1 AAAATATTT
120922679 AAAA
1 AAAA
120922683 AATAATTTGA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
8 2 0.03
9 27 0.44
10 33 0.53
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:120922618 original size:19 final size:18
Alignment explanation
Indices: 120922594--120922682 Score: 63
Period size: 19 Copynumber: 4.7 Consensus size: 18
120922584 TAAAATTTAA
120922594 AAAATATTTAAAATCATTT
1 AAAATATTTAAAAT-ATTT
*
120922613 AAAATATTAAAAAATATTT
1 AAAATATT-TAAAATATTT
* * *
120922632 TAAATCATTTTAAATGTTTT
1 AAAAT-ATTTAAAAT-ATTT
* *
120922652 ATAATATTAAAAATATATT
1 AAAATATTTAAAATAT-TT
*
120922671 -TAATATTTAAAA
1 AAAATATTTAAAA
120922683 AATAATTTGA
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
18 12 0.22
19 29 0.53
20 14 0.25
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (18 bp):
AAAATATTTAAAATATTT
Found at i:120922631 original size:29 final size:28
Alignment explanation
Indices: 120922570--120922696 Score: 110
Period size: 29 Copynumber: 4.3 Consensus size: 28
120922560 AAATTATAAT
*
120922570 TTTAAAATTCTATGTAAAATTTAAAAAATA
1 TTTAAAA-TC-ATTTAAAATTTAAAAAATA
120922600 TTTAAAATCATTTAAAATATTAAAAAATA
1 TTTAAAATCATTTAAAAT-TTAAAAAATA
* * ** *
120922629 TTTTAAATCATTTTAAATGTTTTATAATA
1 TTTAAAATCATTTAAAAT-TTAAAAAATA
* * *
120922658 TTAAAAATATATTTAATATTTAAAAAATAA
1 TTTAAAAT-CATTTAAAATTTAAAAAAT-A
120922688 TTTGAAAAT
1 TTT-AAAAT
120922697 ATATTTTTAA
Statistics
Matches: 77, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
28 8 0.10
29 47 0.61
30 17 0.22
31 5 0.06
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (28 bp):
TTTAAAATCATTTAAAATTTAAAAAATA
Found at i:120922711 original size:33 final size:33
Alignment explanation
Indices: 120922652--120922740 Score: 103
Period size: 34 Copynumber: 2.7 Consensus size: 33
120922642 TAAATGTTTT
120922652 ATAATATTAAAAATATATTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTAATATTTATAAAA
*
120922684 ATAAT-TTGAAAATATATTTTTAATATTTATAAAA
1 ATAATATT-AAAA-ATATATTTAATATTTATAAAA
*
120922718 A-ATATATTATAAAATATTTTTAA
1 ATA-ATATTA-AAAATATATTTAA
120922741 AAAATACATT
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
31 2 0.04
32 9 0.18
33 16 0.32
34 18 0.36
35 5 0.10
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (33 bp):
ATAATATTAAAAATATATTTAATATTTATAAAA
Found at i:120922741 original size:25 final size:24
Alignment explanation
Indices: 120922692--120922751 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 24
120922682 AAATAATTTG
**
120922692 AAAATATATTTTTAATATTTATAA
1 AAAATATATTTAAAATATTTATAA
*
120922716 AAAATATATTATAAAATATTTTTAA
1 AAAATATATT-TAAAATATTTATAA
*
120922741 AAAATACATTT
1 AAAATATATTT
120922752 CAAGTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAAATATATTTAAAATATTTATAA
Found at i:120922744 original size:13 final size:13
Alignment explanation
Indices: 120922676--120922746 Score: 53
Period size: 13 Copynumber: 5.8 Consensus size: 13
120922666 ATATTTAATA
*
120922676 TTTAAAAAATAAT
1 TTTAAAAAATATT
* *
120922689 TTGAAAATATATT
1 TTTAAAAAATATT
120922702 TTT----AATATT
1 TTTAAAAAATATT
*
120922711 TATAAAAAATA-T
1 TTTAAAAAATATT
* *
120922723 ATTATAAAATATT
1 TTTAAAAAATATT
120922736 TTTAAAAAATA
1 TTTAAAAAATA
120922747 CATTTCAAGT
Statistics
Matches: 42, Mismatches: 11, Indels: 10
0.67 0.17 0.16
Matches are distributed among these distances:
9 7 0.17
12 9 0.21
13 26 0.62
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (13 bp):
TTTAAAAAATATT
Found at i:120938001 original size:2 final size:2
Alignment explanation
Indices: 120937994--120938019 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
120937984 TGTTTTAATA
120937994 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
120938020 TAAAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120938825 original size:18 final size:18
Alignment explanation
Indices: 120938782--120938829 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
120938772 ATAAAAAATA
*
120938782 TATATTT-AATATATATT
1 TATATTTAAATTTATATT
*
120938799 T-T-TTAAAATTTATATT
1 TATATTTAAATTTATATT
120938815 TATATTTAAATTTAT
1 TATATTTAAATTTAT
120938830 TAATAGTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.08
16 11 0.44
17 2 0.08
18 10 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTTAAATTTATATT
Found at i:120938959 original size:21 final size:21
Alignment explanation
Indices: 120938931--120938974 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
120938921 TTAAAAAAAG
120938931 AATTT-AAAAATAATATT-TAA
1 AATTTAAAAAAT-ATATTATAA
120938951 AATTGTAAAAAATATATTATAA
1 AATT-TAAAAAATATATTATAA
120938973 AA
1 AA
120938975 CATTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.19
21 6 0.29
22 11 0.52
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
AATTTAAAAAATATATTATAA
Found at i:120939074 original size:38 final size:38
Alignment explanation
Indices: 120939027--120939100 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
120939017 ATAAATAAAC
* *
120939027 AAAATAAAATAAGAAAAA-ACATAAAATTTCAAAAAAGT
1 AAAAAAAAATAAGAAAAAGACA-AAAATTTAAAAAAAGT
* *
120939065 AAAAAAAAATAGGAAAAAGACAAAATTTTAAAAAAA
1 AAAAAAAAATAAGAAAAAGACAAAAATTTAAAAAAA
120939101 TATTTAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 28 0.90
39 3 0.10
ACGTcount: A:0.73, C:0.04, G:0.07, T:0.16
Consensus pattern (38 bp):
AAAAAAAAATAAGAAAAAGACAAAAATTTAAAAAAAGT
Found at i:120939131 original size:27 final size:28
Alignment explanation
Indices: 120939101--120939164 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 28
120939091 TTTAAAAAAA
* * *
120939101 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAAAATTATAATTTCTTAAATG
*
120939128 TA-TTAAAAAATTATAATTTTTTAAATG
1 TATTTAAAAAATTATAATTTCTTAAATG
120939155 TATTTAAAAA
1 TATTTAAAAA
120939165 TTGTATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 20 0.65
27 4 0.13
28 7 0.23
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (28 bp):
TATTTAAAAAATTATAATTTCTTAAATG
Found at i:120939172 original size:26 final size:26
Alignment explanation
Indices: 120939101--120939166 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
120939091 TTTAAAAAAA
* *
120939101 TATTTAAAATATTATGATTTCTTATAT
1 TATTTAAAA-ATTATAATTTCTTAAAT
* *
120939128 TATTAAAAAATTATAATTTTTTAAAT
1 TATTTAAAAATTATAATTTCTTAAAT
120939154 GTATTTAAAAATT
1 -TATTTAAAAATT
120939167 GTATTTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 14 0.42
27 19 0.58
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TATTTAAAAATTATAATTTCTTAAAT
Found at i:120939621 original size:21 final size:21
Alignment explanation
Indices: 120939597--120939683 Score: 63
Period size: 22 Copynumber: 4.0 Consensus size: 21
120939587 TAAAAAATAT
120939597 TTTTAAAAATAATAATTAAAA
1 TTTTAAAAATAATAATTAAAA
*
120939618 TTTTAAAAA-AATATTATAAAACA
1 TTTTAAAAATAATA--ATTAAA-A
*
120939641 TTTTAAATAT-AT-ATTACAAA
1 TTTTAAAAATAATAATTA-AAA
*
120939661 TTTTTTAAAATTAATAATATAAA
1 --TTTTAAAAATAATAAT-TAAA
120939684 TTAAATAAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
20 8 0.16
21 11 0.22
22 13 0.25
23 13 0.25
24 4 0.08
25 2 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTTAAAAATAATAATTAAAA
Found at i:120939623 original size:34 final size:32
Alignment explanation
Indices: 120939543--120939632 Score: 83
Period size: 35 Copynumber: 2.6 Consensus size: 32
120939533 AAATGCATTT
* *
120939543 TTAAAATTTATAAAAAATTAATTTCACAAATATA
1 TTAAAATTT-TAAAAAA-TATTTTCAAAAATATA
*
120939577 TATATAAA-TTTAAAAAATATTTTTAAAAATAATAA
1 T-TA-AAATTTTAAAAAATATTTTCAAAAAT-AT-A
120939612 TTAAAATTTTAAAAAAATATT
1 TTAAAATTTT-AAAAAATATT
120939633 ATAAAACATT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
33 13 0.28
34 15 0.32
35 16 0.34
36 3 0.06
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (32 bp):
TTAAAATTTTAAAAAATATTTTCAAAAATATA
Found at i:120939684 original size:23 final size:22
Alignment explanation
Indices: 120939595--120939685 Score: 62
Period size: 23 Copynumber: 4.1 Consensus size: 22
120939585 TTTAAAAAAT
*
120939595 ATTTTTAAAAATAATAAT-TAA
1 ATTTTTTAAAATAATAATATAA
* * *
120939616 A-ATTTTAAAAAAATATTATAAA
1 ATTTTTTAAAATAATAATAT-AA
** * *
120939638 ACATTTT-AAATATATATTACAA
1 ATTTTTTAAAATA-ATAATATAA
120939660 ATTTTTTAAAATTAATAATATAA
1 ATTTTTTAAAA-TAATAATATAA
120939683 ATT
1 ATT
120939686 AAATAAACAA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
20 12 0.22
21 2 0.04
22 14 0.26
23 24 0.44
24 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTTTAAAATAATAATATAA
Found at i:120939718 original size:18 final size:18
Alignment explanation
Indices: 120939668--120939719 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
120939658 AAATTTTTTA
*
120939668 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
* *
120939686 AAATAAACAAAATAAATT
1 AAATAAATAATATAAATT
*
120939704 AGGA-AAATAATATAAA
1 A-AATAAATAATATAAA
120939720 ACTTAAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:120939776 original size:9 final size:9
Alignment explanation
Indices: 120939762--120939794 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
120939752 AAAATATAAG
120939762 AAAAAAAGT
1 AAAAAAAGT
120939771 -AAAAAAGT
1 AAAAAAAGT
120939779 AAAAAAAGT
1 AAAAAAAGT
120939788 AAAAAAA
1 AAAAAAA
120939795 ATATAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:120939782 original size:7 final size:8
Alignment explanation
Indices: 120939763--120939793 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
120939753 AAATATAAGA
120939763 AAAAAAGT
1 AAAAAAGT
120939771 AAAAAAGT
1 AAAAAAGT
120939779 AAAAAAAGT
1 -AAAAAAGT
120939788 AAAAAA
1 AAAAAA
120939794 AATATAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAAGT
Found at i:120939802 original size:17 final size:16
Alignment explanation
Indices: 120939759--120939793 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
120939749 GACAAAATAT
120939759 AAGAAAAAAAGTAAAA
1 AAGAAAAAAAGTAAAA
120939775 AAGTAAAAAAAGTAAAA
1 AAG-AAAAAAAGTAAAA
120939792 AA
1 AA
120939794 AATATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (16 bp):
AAGAAAAAAAGTAAAA
Found at i:120948734 original size:16 final size:16
Alignment explanation
Indices: 120948713--120948745 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
120948703 ATAACTTAAA
120948713 CTAATTAATTTTAACT
1 CTAATTAATTTTAACT
*
120948729 CTAATTGATTTTAACT
1 CTAATTAATTTTAACT
120948745 C
1 C
120948746 GAGAAGATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (16 bp):
CTAATTAATTTTAACT
Found at i:120956263 original size:17 final size:18
Alignment explanation
Indices: 120956238--120956272 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
120956228 TAAAATTAAA
120956238 TAATAATAAA-ATATTTT
1 TAATAATAAATATATTTT
*
120956255 TAATGATAAATATATTTT
1 TAATAATAAATATATTTT
120956273 ATTTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TAATAATAAATATATTTT
Found at i:120956326 original size:16 final size:14
Alignment explanation
Indices: 120956291--120956322 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
120956281 AAATATCCAC
120956291 TAATTTTTTAGATA
1 TAATTTTTTAGATA
*
120956305 TAATTTTTTATATA
1 TAATTTTTTAGATA
120956319 TAAT
1 TAAT
120956323 ATTTATATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (14 bp):
TAATTTTTTAGATA
Found at i:120958192 original size:27 final size:27
Alignment explanation
Indices: 120958162--120958219 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
120958152 ATAGGTGGTG
* * *
120958162 CCTATCTGGTAGGTGCCAGTGGTGACT
1 CCTACCTGATAGGTGCCACTGGTGACT
*
120958189 CCTACCTGATAGGTGTCACTGGTGACT
1 CCTACCTGATAGGTGCCACTGGTGACT
120958216 CCTA
1 CCTA
120958220 GCTGTTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.29
Consensus pattern (27 bp):
CCTACCTGATAGGTGCCACTGGTGACT
Found at i:120958409 original size:104 final size:100
Alignment explanation
Indices: 120958222--120958605 Score: 344
Period size: 104 Copynumber: 3.8 Consensus size: 100
120958212 GACTCCTAGC
* * * * *
120958222 TGTTAGTAGTTTATGATTAGGTTATAATTTATTAGTG--T--TTT-GTGTTTTGTTG-TCTTTTA
1 TGTTAGTAATTTATGATTAGATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTG-TGATTTTTTA
*
120958281 GTAATGTAATTCCTTTTAAAAAAATTGTTATAGTTATTTATTT
65 GTAATGT-A----TTTTAAAAAAATTATT-TA-TTATTTATTT
* * * *
120958324 TGTTTGTAATTTATGGGATTAGGTTATAAATTGTTAGTGTTAAGTTTAG-GGTTTGTGATTTTTT
1 TGTTAGTAATTTAT--GATTAGATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTT
120958388 AGTAATGTGATTTTAAAAAAATATATTT-TTATAGTTATTT
64 AGTAATGT-ATTTTAAAAAAAT-TATTTATTAT--TTATTT
* * *
120958428 TGCTAGTGATTTATGATTAGATTATACAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATCTTTT
1 TGTTAGTAATTTATGATTAGATTAT--AAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTT
* *
120958493 AGTAATGTA-TTTAAAAAAA-TAATT-TTATAGTATTT
64 AGTAATGTATTTTAAAAAAATTATTTATTAT-TTATTT
* *
120958528 TGTTAGTAATTTATGAATAGATTATATAATTTGTTAGTGTTTAGTTTAGTGTTTTATGATTTTTT
1 TGTTAGTAATTTATGATTAGATTATA-AA-TTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTT
120958593 --TAATGTAATTTTA
64 AGTAATGT-ATTTTA
120958606 TTTGATTTTT
Statistics
Matches: 240, Mismatches: 24, Indels: 38
0.79 0.08 0.13
Matches are distributed among these distances:
98 7 0.03
99 3 0.01
100 64 0.27
101 8 0.03
102 26 0.11
103 10 0.04
104 73 0.30
105 24 0.10
107 2 0.01
108 22 0.09
109 1 0.00
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (100 bp):
TGTTAGTAATTTATGATTAGATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTTAG
TAATGTATTTTAAAAAAATTATTTATTATTTATTT
Found at i:120958563 original size:100 final size:101
Alignment explanation
Indices: 120958318--120958605 Score: 363
Period size: 100 Copynumber: 2.8 Consensus size: 101
120958308 TTATAGTTAT
* * * *
120958318 TTATTTTGTTTGTAATTTATGGGATTAGGTTATAAATTGTTAGTGTTAAGTTTAG-GGTTTGTGA
1 TTATTTTGTTAGTAATTTAT--GATTAGATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
120958382 TTTTTTAGTAATGTGATTTTAAAAAAATATATTTTTATAG
64 -TTTTTAGTAATGT-ATTTTAAAAAAATATATTTTTATAG
* *
120958422 TTATTTTGCTAGTGATTTATGATTAGATTATACAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
1 TTATTTTGTTAGTAATTTATGATTAGATTAT--AAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
120958487 TCTTTTAGTAATGTA-TTTAAAAAAATA-A-TTTTATAG
64 T-TTTTAGTAATGTATTTTAAAAAAATATATTTTTATAG
* *
120958523 -TATTTTGTTAGTAATTTATGAATAGATTATATAATTTGTTAGTGTTTAGTTTAGTGTTTTATGA
1 TTATTTTGTTAGTAATTTATGATTAGATTATA-AA-TTGTTAGTGTTTAGTTTAGTGTTTTGTGA
*
120958587 TTTTT-TTAATGTAATTTTA
64 TTTTTAGTAATGT-ATTTTA
120958606 TTTGATTTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
98 7 0.04
99 7 0.04
100 60 0.36
101 8 0.05
102 11 0.07
103 12 0.07
104 40 0.24
105 20 0.12
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.53
Consensus pattern (101 bp):
TTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATT
TTTAGTAATGTATTTTAAAAAAATATATTTTTATAG
Found at i:120959040 original size:19 final size:21
Alignment explanation
Indices: 120959016--120959058 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
120959006 AAGGCACCAC
*
120959016 AAATAAAATAA-TATT-TAAA
1 AAATAAAAAAATTATTATAAA
120959035 AAATAAAAAAATTATTATAAA
1 AAATAAAAAAATTATTATAAA
120959056 AAA
1 AAA
120959059 AAAGGTGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 4 0.19
21 7 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATAAAAAAATTATTATAAA
Found at i:120961124 original size:15 final size:16
Alignment explanation
Indices: 120961098--120961131 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
120961088 AGTAAAGTAA
120961098 ATTTCTCAACAATTAC
1 ATTTCTCAACAATTAC
120961114 ATTTC-CAACAATTAC
1 ATTTCTCAACAATTAC
120961129 ATT
1 ATT
120961132 CTAAGGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTTCTCAACAATTAC
Found at i:120962387 original size:26 final size:26
Alignment explanation
Indices: 120962358--120962440 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 26
120962348 CATATCTCTA
*
120962358 TTTTCCATATATGTTATTCTCGTTCC
1 TTTTACATATATGTTATTCTCGTTCC
120962384 TTTTACATAT-T-TATATT-TC-TAT--
1 TTTTACATATATGT-TATTCTCGT-TCC
*
120962406 TTTT-TATATATGTTATTCTCGTTCC
1 TTTTACATATATGTTATTCTCGTTCC
120962431 TTTTACATAT
1 TTTTACATAT
120962441 TTGATTTTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 18
0.68 0.05 0.27
Matches are distributed among these distances:
21 4 0.09
22 9 0.20
23 5 0.11
24 5 0.11
25 9 0.20
26 13 0.29
ACGTcount: A:0.20, C:0.16, G:0.05, T:0.59
Consensus pattern (26 bp):
TTTTACATATATGTTATTCTCGTTCC
Found at i:120962423 original size:47 final size:48
Alignment explanation
Indices: 120962349--120962462 Score: 187
Period size: 47 Copynumber: 2.4 Consensus size: 48
120962339 ATTTCCTTTC
*
120962349 ATATCTCTATTTTCCATATATGTTATTCTCGTTCCTTTTACATATTT-
1 ATATTTCTATTTTCCATATATGTTATTCTCGTTCCTTTTACATATTTG
**
120962396 ATATTTCTATTTTTTATATATGTTATTCTCGTTCCTTTTACATATTTG
1 ATATTTCTATTTTCCATATATGTTATTCTCGTTCCTTTTACATATTTG
120962444 AT-TTTCTATTTTCCATATA
1 ATATTTCTATTTTCCATATA
120962463 CTCTCTCTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 59 0.97
48 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.04, T:0.58
Consensus pattern (48 bp):
ATATTTCTATTTTCCATATATGTTATTCTCGTTCCTTTTACATATTTG
Found at i:120962434 original size:24 final size:24
Alignment explanation
Indices: 120962366--120962440 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
120962356 TATTTTCCAT
120962366 ATATGTTATTCTCGTTCCTTTTAC
1 ATATGTTATTCTCGTTCCTTTTAC
* * *
120962390 ATAT-TTATATTTC-TAT-TTTTTAT
1 ATATGTTAT-TCTCGT-TCCTTTTAC
120962413 ATATGTTATTCTCGTTCCTTTTAC
1 ATATGTTATTCTCGTTCCTTTTAC
120962437 ATAT
1 ATAT
120962441 TTGATTTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
23 18 0.45
24 22 0.55
ACGTcount: A:0.21, C:0.15, G:0.05, T:0.59
Consensus pattern (24 bp):
ATATGTTATTCTCGTTCCTTTTAC
Found at i:120962450 original size:26 final size:26
Alignment explanation
Indices: 120962374--120962450 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
120962364 ATATATGTTA
120962374 TTCTCGTTCCTTTTACATATTT-ATAT
1 TTCTCGTTCCTTTTACATATTTGAT-T
* *
120962400 TTCT-ATT--TTTT--ATATATG-TT
1 TTCTCGTTCCTTTTACATATTTGATT
120962420 ATTCTCGTTCCTTTTACATATTTGATT
1 -TTCTCGTTCCTTTTACATATTTGATT
120962447 TTCT
1 TTCT
120962451 ATTTTCCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
20 1 0.03
21 10 0.26
22 2 0.05
23 4 0.10
24 4 0.10
25 2 0.05
26 14 0.36
27 2 0.05
ACGTcount: A:0.18, C:0.16, G:0.05, T:0.61
Consensus pattern (26 bp):
TTCTCGTTCCTTTTACATATTTGATT
Found at i:120968591 original size:2 final size:2
Alignment explanation
Indices: 120968584--120968608 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120968574 GAATGTTGAC
120968584 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
120968609 ACAAGGTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:120974559 original size:35 final size:35
Alignment explanation
Indices: 120974520--120974592 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
120974510 GGTATGTGAT
120974520 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
120974555 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
120974590 ATA
1 ATA
120974593 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:120985480 original size:9 final size:9
Alignment explanation
Indices: 120985466--120985490 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
120985456 CAATAATATT
120985466 AAAAAAAGA
1 AAAAAAAGA
120985475 AAAAAAAGA
1 AAAAAAAGA
120985484 AAAAAAA
1 AAAAAAA
120985491 AAGAAAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:120985599 original size:33 final size:33
Alignment explanation
Indices: 120985536--120985601 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
120985526 CCAACGACCA
* * *
120985536 AACAAACATAATCTAAGTGTACAATATGAAGGT
1 AACAAACATAATCTAAGAGAAAAATATGAAGGT
*
120985569 AACAAACATAATCTAAGAGAAAAATTTGAAGGT
1 AACAAACATAATCTAAGAGAAAAATATGAAGGT
120985602 CTGCGATGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.23
Consensus pattern (33 bp):
AACAAACATAATCTAAGAGAAAAATATGAAGGT
Found at i:120987374 original size:4 final size:4
Alignment explanation
Indices: 120987365--120987391 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
120987355 TATACCAAAT
120987365 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
120987392 TATAAACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:120998865 original size:22 final size:24
Alignment explanation
Indices: 120998840--120998889 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
120998830 CATAATAATA
*
120998840 AATTGTAG-TTTT-ATAT-TTTTTT
1 AATT-TAGCTTTTAATATCTTTTTG
120998862 AATTTAGCTTTTAATATCTTTTTG
1 AATTTAGCTTTTAATATCTTTTTG
120998886 AATT
1 AATT
120998890 AAATTAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 3 0.12
22 8 0.33
23 4 0.17
24 9 0.38
ACGTcount: A:0.26, C:0.04, G:0.08, T:0.62
Consensus pattern (24 bp):
AATTTAGCTTTTAATATCTTTTTG
Found at i:121001304 original size:23 final size:23
Alignment explanation
Indices: 121001262--121001305 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
121001252 GTGATTTGAC
* *
121001262 AAAAAAATATAAGTTCAAATACT
1 AAAAAAATAAAAATTCAAATACT
*
121001285 AAAAAAATAAAAATTTAAATA
1 AAAAAAATAAAAATTCAAATA
121001306 AAGAACTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (23 bp):
AAAAAAATAAAAATTCAAATACT
Found at i:121008005 original size:7 final size:7
Alignment explanation
Indices: 121007994--121008039 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
121007984 AGCAAAGCCG
*
121007994 TTTCAGG
1 TTTCAGC
*
121008001 TTTCAGG
1 TTTCAGC
121008008 TTTCAGC
1 TTTCAGC
121008015 TTTCAGC
1 TTTCAGC
121008022 TTTCAGC
1 TTTCAGC
121008029 TTTCAGC
1 TTTCAGC
121008036 TTTC
1 TTTC
121008040 GCGGACTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (7 bp):
TTTCAGC
Found at i:121016255 original size:18 final size:18
Alignment explanation
Indices: 121016232--121016290 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
121016222 TATATACGAT
121016232 ATTAAAATAAAAAATTGA
1 ATTAAAATAAAAAATTGA
* *** *
121016250 ATT-AAATTATGTA-CGA
1 ATTAAAATAAAAAATTGA
121016266 TATTAAAATAAAAAATTGA
1 -ATTAAAATAAAAAATTGA
121016285 ATTAAA
1 ATTAAA
121016291 TTGTGAGTAA
Statistics
Matches: 28, Mismatches: 10, Indels: 6
0.64 0.23 0.14
Matches are distributed among these distances:
16 2 0.07
17 9 0.32
18 15 0.54
19 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (18 bp):
ATTAAAATAAAAAATTGA
Found at i:121016265 original size:35 final size:35
Alignment explanation
Indices: 121016226--121016292 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
121016216 ATGAAGTATA
121016226 TACGATATTAAAATAAAAAATTGAATTAAATTATG
1 TACGATATTAAAATAAAAAATTGAATTAAATTATG
121016261 TACGATATTAAAATAAAAAATTGAATTAAATT
1 TACGATATTAAAATAAAAAATTGAATTAAATT
121016293 GTGAGTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.34
Consensus pattern (35 bp):
TACGATATTAAAATAAAAAATTGAATTAAATTATG
Found at i:121016288 original size:30 final size:30
Alignment explanation
Indices: 121016217--121016288 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 30
121016207 TAATAACACA
*
121016217 TGAAGTATATACGATATTAAAATAAAAAAT
1 TGAATTATATACGATATTAAAATAAAAAAT
121016247 TGAATTAAATTATGTACGATATTAAAATAAAAAAT
1 TGAATT--A-TA--TACGATATTAAAATAAAAAAT
121016282 TGAATTA
1 TGAATTA
121016289 AATTGTGAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
30 5 0.14
32 1 0.03
33 3 0.08
35 27 0.75
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.33
Consensus pattern (30 bp):
TGAATTATATACGATATTAAAATAAAAAAT
Found at i:121016313 original size:35 final size:35
Alignment explanation
Indices: 121016234--121016313 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
121016224 TATACGATAT
* *
121016234 TAAAATAAAAAATTGAATTAAATTATGTACGATAT
1 TAAAATAAAAAATTGAATTAAATTATGTACGAAAA
*
121016269 TAAAATAAAAAATTGAATTAAATTGTG-A-GTAAAA
1 TAAAATAAAAAATTGAATTAAATTATGTACG-AAAA
121016303 TAAAACTAAAA
1 TAAAA-TAAAA
121016314 TATATAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
33 1 0.03
34 8 0.20
35 31 0.77
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.30
Consensus pattern (35 bp):
TAAAATAAAAAATTGAATTAAATTATGTACGAAAA
Found at i:121022191 original size:19 final size:19
Alignment explanation
Indices: 121022154--121022211 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
121022144 TATTTTAATC
* *
121022154 TTTTAAAATTGAATTAAATT
1 TTTTAAAATT-TATAAAATT
*
121022174 TTTTAAAATTTATAAAATGC
1 TTTTAAAATTTATAAAAT-T
*
121022194 TATTAAAA-TTATAAAATT
1 TTTTAAAATTTATAAAATT
121022212 ATATTTTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTTAAAATTTATAAAATT
Found at i:121022216 original size:19 final size:20
Alignment explanation
Indices: 121022176--121022216 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
121022166 ATTAAATTTT
*
121022176 TTAAAATTTATAAAATGCTA
1 TTAAAATTTATAAAATGATA
*
121022196 TTAAAA-TTATAAAATTATA
1 TTAAAATTTATAAAATGATA
121022215 TT
1 TT
121022217 TTTTATTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TTAAAATTTATAAAATGATA
Found at i:121023594 original size:21 final size:21
Alignment explanation
Indices: 121023570--121023621 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
121023560 AAATAAATAT
*
121023570 TCTAAATATATATGT-AAAAAA
1 TCTAAATATAAAT-TCAAAAAA
*
121023591 TCTAAATAAAAATTCAAAAAA
1 TCTAAATATAAATTCAAAAAA
121023612 TCTTAAATAT
1 TC-TAAATAT
121023622 TTTTTATCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 19 0.73
22 6 0.23
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (21 bp):
TCTAAATATAAATTCAAAAAA
Found at i:121026081 original size:16 final size:16
Alignment explanation
Indices: 121026060--121026090 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
121026050 TAAATTTATG
121026060 ATAATTTAGAAAAATA
1 ATAATTTAGAAAAATA
*
121026076 ATAATTTATAAAAAT
1 ATAATTTAGAAAAAT
121026091 TGCAAACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
ATAATTTAGAAAAATA
Found at i:121028391 original size:66 final size:66
Alignment explanation
Indices: 121028316--121028454 Score: 278
Period size: 66 Copynumber: 2.1 Consensus size: 66
121028306 TTTGTGATTT
121028316 TAGATGTTGCACAATTTCCTCTGCTGCATATAAATGTTGTTTGAATAGTATAAGGTTAGAAATTG
1 TAGATGTTGCACAATTTCCTCTGCTGCATATAAATGTTGTTTGAATAGTATAAGGTTAGAAATTG
121028381 A
66 A
121028382 TAGATGTTGCACAATTTCCTCTGCTGCATATAAATGTTGTTTGAATAGTATAAGGTTAGAAATTG
1 TAGATGTTGCACAATTTCCTCTGCTGCATATAAATGTTGTTTGAATAGTATAAGGTTAGAAATTG
121028447 A
66 A
121028448 TAGATGT
1 TAGATGT
121028455 ATTGGGTTGA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 73 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (66 bp):
TAGATGTTGCACAATTTCCTCTGCTGCATATAAATGTTGTTTGAATAGTATAAGGTTAGAAATTG
A
Found at i:121040333 original size:21 final size:21
Alignment explanation
Indices: 121040307--121040353 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
121040297 CGATTTCATG
121040307 ATTAAGGCATGAGGAAACAAT
1 ATTAAGGCATGAGGAAACAAT
121040328 ATTAAGGCATGAGGAAACAAT
1 ATTAAGGCATGAGGAAACAAT
*
121040349 CTTAA
1 ATTAA
121040354 CACACCACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (21 bp):
ATTAAGGCATGAGGAAACAAT
Found at i:121047323 original size:29 final size:29
Alignment explanation
Indices: 121047266--121047348 Score: 98
Period size: 29 Copynumber: 2.8 Consensus size: 29
121047256 GATGGGTCAG
121047266 TGTATTTTTCATATATTTAAAATTTAGT-CT
1 TGTATTTTT-ATAT-TTTAAAATTTAGTCCT
121047296 CTGTATTTTTAT-TTTTAAGAATTTAGTCCT
1 -TGTATTTTTATATTTTAA-AATTTAGTCCT
*
121047326 TTTATTTTCTATATTTTAAAATT
1 TGTATTTT-TATATTTTAAAATT
121047349 CAGGTTCTAG
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
28 5 0.11
29 16 0.34
30 11 0.23
31 15 0.32
ACGTcount: A:0.28, C:0.07, G:0.06, T:0.59
Consensus pattern (29 bp):
TGTATTTTTATATTTTAAAATTTAGTCCT
Found at i:121049567 original size:16 final size:16
Alignment explanation
Indices: 121049539--121049589 Score: 50
Period size: 18 Copynumber: 3.1 Consensus size: 16
121049529 ACTCAGAATG
121049539 GGAGGCAGA-GATGGAA
1 GGAGG-AGACGATGGAA
*
121049555 GGAGGTGACGATGGCAGA
1 GGAGGAGACGATGG-A-A
*
121049573 GGTGGAGACGATGGAA
1 GGAGGAGACGATGGAA
121049589 G
1 G
121049590 ATTCGAGCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 2 0.07
16 12 0.41
17 2 0.07
18 13 0.45
ACGTcount: A:0.31, C:0.08, G:0.51, T:0.10
Consensus pattern (16 bp):
GGAGGAGACGATGGAA
Found at i:121056552 original size:23 final size:23
Alignment explanation
Indices: 121056493--121056554 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 23
121056483 TTTGATAAAG
*
121056493 CTTTAATCATTGATATCTTTTTA
1 CTTTAATCATTGATATCTTTTCA
* *
121056516 GTTT-GT-ATTG---TCTTTTCA
1 CTTTAATCATTGATATCTTTTCA
121056534 CTTTAATCATTGATATCTTTT
1 CTTTAATCATTGATATCTTTT
121056555 TTTACTCCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 10
0.66 0.11 0.23
Matches are distributed among these distances:
18 10 0.34
19 1 0.03
20 4 0.14
21 4 0.14
22 1 0.03
23 9 0.31
ACGTcount: A:0.21, C:0.13, G:0.08, T:0.58
Consensus pattern (23 bp):
CTTTAATCATTGATATCTTTTCA
Found at i:121057694 original size:30 final size:30
Alignment explanation
Indices: 121057658--121057718 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
121057648 CAATTTAACA
*
121057658 AGCAAATGACTCTAAAATAATAACAAAATT
1 AGCAAATGACTCTAAAATAATAAAAAAATT
* *
121057688 AGCAAATGTCTTTAAAATAATAAAAAAATT
1 AGCAAATGACTCTAAAATAATAAAAAAATT
121057718 A
1 A
121057719 ACAATAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.26
Consensus pattern (30 bp):
AGCAAATGACTCTAAAATAATAAAAAAATT
Found at i:121058345 original size:30 final size:30
Alignment explanation
Indices: 121058311--121058373 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
121058301 ACTTATTTTA
*
121058311 TTGTTAATTATGTTATTATTTTAAAGACAT
1 TTGTTAATTATATTATTATTTTAAAGACAT
* *
121058341 TTGTTAATTTTATTATTATTTTAGAGACAT
1 TTGTTAATTATATTATTATTTTAAAGACAT
121058371 TTG
1 TTG
121058374 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.56
Consensus pattern (30 bp):
TTGTTAATTATATTATTATTTTAAAGACAT
Found at i:121059934 original size:35 final size:35
Alignment explanation
Indices: 121059890--121060223 Score: 411
Period size: 35 Copynumber: 9.5 Consensus size: 35
121059880 TCCTCATTGA
121059890 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCGGTAT-GGAT
** *
121059925 AATGA-CATACCTACATTTCTTAACTCAGTATGGAT
1 AAT-ACCATACCTACATTTCACAACTCGGTATGGAT
* *
121059960 AATACCATACCTACATTTCTCAACTCGGCATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * *
121059995 GATACCATACCTACGTTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* ** *
121060030 AATACCATATCTACATTTTTCAATTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
121060065 GATACCATACCTACATTTCACAACTCGGTAAGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * *
121060100 GATACCATACCCACATGTCACAACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * * *
121060135 GATACCATACCTACGTTTCACATCTCGGTATGGTT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * *
121060170 AATACCATACTTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
*
121060205 AATATCATACCTACATTTC
1 AATACCATACCTACATTTC
121060224 GCACTTTGTC
Statistics
Matches: 258, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
34 4 0.02
35 253 0.98
36 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCGGTATGGAT
Found at i:121062836 original size:2 final size:2
Alignment explanation
Indices: 121062829--121062854 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121062819 CAAACCATTC
121062829 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121062855 TTACTTTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121065875 original size:41 final size:41
Alignment explanation
Indices: 121065830--121065934 Score: 138
Period size: 41 Copynumber: 2.6 Consensus size: 41
121065820 AACTGAACAA
* * *
121065830 TAGCGGTGCTTTTGGAAAAAGGCTGGTATAGATCGAGATTT
1 TAGCGGCGCTTTTGGAAAAACGCTGCTATAGATCGAGATTT
* * *
121065871 TAGCGGCACTTTTGAAAAAACGCTGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCTGCTATAGATCGAGATTT
* *
121065912 TAGTGGCGTTTTTGGAAAAACGC
1 TAGCGGCGCTTTTGGAAAAACGC
121065935 CGCAAAAAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCTGCTATAGATCGAGATTT
Found at i:121066493 original size:7 final size:7
Alignment explanation
Indices: 121066478--121066511 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
121066468 TAAGGGTTGG
*
121066478 GGTTAAT
1 GGTTTAT
121066485 GGTTTAT
1 GGTTTAT
121066492 GGTTTAT
1 GGTTTAT
*
121066499 GTTTTAT
1 GGTTTAT
121066506 GGTTTA
1 GGTTTA
121066512 GAGTTTAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (7 bp):
GGTTTAT
Found at i:121078329 original size:19 final size:20
Alignment explanation
Indices: 121078301--121078339 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
121078291 ATAAATTTTT
*
121078301 AAAATTTTA-TATAAAAATA
1 AAAATATTATTATAAAAATA
121078320 AAAATATTATTATAAAAATA
1 AAAATATTATTATAAAAATA
121078340 TATATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATATTATTATAAAAATA
Found at i:121078334 original size:14 final size:15
Alignment explanation
Indices: 121078317--121078346 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
121078307 TTATATAAAA
121078317 ATAAAAATAT-TATT
1 ATAAAAATATATATT
121078331 ATAAAAATATATATT
1 ATAAAAATATATATT
121078346 A
1 A
121078347 ATTTATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAAAAATATATATT
Found at i:121079753 original size:19 final size:18
Alignment explanation
Indices: 121079731--121079766 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
121079721 TCATGTGTTT
*
121079731 TATTTTTTATATATTTTTG
1 TATTTATTATAT-TTTTTG
121079750 TATTTATTATATTTTTT
1 TATTTATTATATTTTTT
121079767 CAATTACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TATTTATTATATTTTTTG
Found at i:121080059 original size:22 final size:24
Alignment explanation
Indices: 121080034--121080092 Score: 79
Period size: 22 Copynumber: 2.6 Consensus size: 24
121080024 TTAATAATTA
121080034 ATTAAAAATTTAAAT-TTA-AAAT
1 ATTAAAAATTTAAATGTTATAAAT
*
121080056 ATTAAAAATTTAATTGTTATAAAT
1 ATTAAAAATTTAAATGTTATAAAT
*
121080080 ATT-ACAATTTAAA
1 ATTAAAAATTTAAA
121080093 AATAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.44
23 11 0.34
24 7 0.22
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTAAAAATTTAAATGTTATAAAT
Found at i:121080734 original size:20 final size:19
Alignment explanation
Indices: 121080693--121080733 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
121080683 TGAATTATCC
121080693 AAAGACAAATGTATTAAAA
1 AAAGACAAATGTATTAAAA
121080712 AAAGACAAATGTATTAAAA
1 AAAGACAAATGTATTAAAA
121080731 AAA
1 AAA
121080734 ACATTGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.66, C:0.05, G:0.10, T:0.20
Consensus pattern (19 bp):
AAAGACAAATGTATTAAAA
Found at i:121087712 original size:17 final size:19
Alignment explanation
Indices: 121087684--121087719 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
121087674 AATTATGTTT
121087684 ATTTTCTTTAAA-TTAATG
1 ATTTTCTTTAAATTTAATG
121087702 ATTTT-TTTAAATTTAATG
1 ATTTTCTTTAAATTTAATG
121087720 TATTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (19 bp):
ATTTTCTTTAAATTTAATG
Found at i:121099339 original size:39 final size:39
Alignment explanation
Indices: 121099293--121099370 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
121099283 TAAAAAACAT
121099293 GACAATTAAAAACAAAAAGCCTAAGCTAACCATTATTTA
1 GACAATTAAAAACAAAAAGCCTAAGCTAACCATTATTTA
121099332 GACAATTAAAAACAAAAAGCCTAAGCTAACCATTATTTA
1 GACAATTAAAAACAAAAAGCCTAAGCTAACCATTATTTA
121099371 ATCAAGTATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.51, C:0.18, G:0.08, T:0.23
Consensus pattern (39 bp):
GACAATTAAAAACAAAAAGCCTAAGCTAACCATTATTTA
Found at i:121102737 original size:26 final size:26
Alignment explanation
Indices: 121102708--121102759 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
121102698 CGCCGTCTGA
*
121102708 TTTGGGCTTGTTGATACGCCGACAAT
1 TTTGGGCTTATTGATACGCCGACAAT
121102734 TTTGGGCTTATTGATACGCCGACAAT
1 TTTGGGCTTATTGATACGCCGACAAT
121102760 ATATCGCGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (26 bp):
TTTGGGCTTATTGATACGCCGACAAT
Found at i:121104351 original size:20 final size:20
Alignment explanation
Indices: 121104318--121104356 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
121104308 CTAAACTATG
*
121104318 AATTCAAGATTCAAAGTTTC
1 AATTCAAGAATCAAAGTTTC
* *
121104338 AATTCATGAATCAATGTTT
1 AATTCAAGAATCAAAGTTT
121104357 AGTTTAAAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (20 bp):
AATTCAAGAATCAAAGTTTC
Found at i:121104390 original size:27 final size:27
Alignment explanation
Indices: 121104359--121104417 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
121104349 CAATGTTTAG
**
121104359 TTTAAAGTT-TAGAGTTTAAATTTAAAA
1 TTTAAAGTTCTAGA-TCAAAATTTAAAA
* *
121104386 TTTAAGGTTCTAGATCAAAATTTAAGA
1 TTTAAAGTTCTAGATCAAAATTTAAAA
121104413 TTTAA
1 TTTAA
121104418 TATTCAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (27 bp):
TTTAAAGTTCTAGATCAAAATTTAAAA
Found at i:121105704 original size:15 final size:16
Alignment explanation
Indices: 121105674--121105706 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
121105664 AAAAATTTTG
121105674 AATTAAACATAAAATA
1 AATTAAACATAAAATA
*
121105690 AATTATACA-AAAATA
1 AATTAAACATAAAATA
121105705 AA
1 AA
121105707 AGTAGTTCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (16 bp):
AATTAAACATAAAATA
Found at i:121106368 original size:23 final size:23
Alignment explanation
Indices: 121106321--121106388 Score: 88
Period size: 22 Copynumber: 3.0 Consensus size: 23
121106311 GTAATATCTT
* *
121106321 ATAAAAATATTATTATT-TTTAA
1 ATAAAAATAATATTATTATGTAA
121106343 ATAAAAATAATATTCATTATGT-A
1 ATAAAAATAATATT-ATTATGTAA
121106366 ATAAAAATAATATTATTAT-TAA
1 ATAAAAATAATATTATTATGTAA
121106388 A
1 A
121106389 AATATTTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.02
22 20 0.49
23 18 0.44
24 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (23 bp):
ATAAAAATAATATTATTATGTAA
Found at i:121106398 original size:19 final size:20
Alignment explanation
Indices: 121106351--121106399 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
121106341 AAATAAAAAT
*
121106351 AATATTCATTATGTAATAAA
1 AATATTTATTATGTAATAAA
* *
121106371 AATA-ATATTAT-TATTAAA
1 AATATTTATTATGTAATAAA
121106389 AATATTTATTA
1 AATATTTATTA
121106400 GAATTTATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 10 0.42
19 10 0.42
20 4 0.17
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
AATATTTATTATGTAATAAA
Found at i:121107602 original size:15 final size:15
Alignment explanation
Indices: 121107582--121107632 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
121107572 ACAAAATAAT
121107582 AACGTAAGTGACTAA
1 AACGTAAGTGACTAA
* * *
121107597 AACGTAAAT-TCTCA
1 AACGTAAGTGACTAA
*
121107611 AACATAAGTGACTAA
1 AACGTAAGTGACTAA
*
121107626 AATGTAA
1 AACGTAA
121107633 TCTGAGATAA
Statistics
Matches: 26, Mismatches: 9, Indels: 2
0.70 0.24 0.05
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (15 bp):
AACGTAAGTGACTAA
Found at i:121110618 original size:53 final size:53
Alignment explanation
Indices: 121110537--121110687 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
121110527 CTTACACGGT
* *
121110537 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
121110592 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
121110645 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
121110688 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:121118094 original size:53 final size:53
Alignment explanation
Indices: 121118013--121118163 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
121118003 CTTACACGGT
* *
121118013 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
121118068 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
121118121 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
121118164 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:121124475 original size:30 final size:27
Alignment explanation
Indices: 121124435--121124526 Score: 78
Period size: 30 Copynumber: 3.2 Consensus size: 27
121124425 TTTTAATATT
*
121124435 ATTTAGTATTTGAACTTGATTTTTTTTCTA
1 ATTTAATATTT-AA-TTGATTTTTTTT-TA
* *
121124465 ATTTGATATTTAAAT-ATTTTTTGTTTA
1 ATTTAATATTTAATTGATTTTTT-TTTA
*
121124492 ATTTAATATTTAAATTTGATAATTTTTTTA
1 ATTTAATATTT-AA-TTGAT-TTTTTTTTA
121124522 ATTTA
1 ATTTA
121124527 GTACCTAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
27 19 0.37
28 5 0.10
29 3 0.06
30 20 0.39
31 4 0.08
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (27 bp):
ATTTAATATTTAATTGATTTTTTTTTA
Found at i:121124484 original size:27 final size:27
Alignment explanation
Indices: 121124453--121124506 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
121124443 TTTGAACTTG
*
121124453 ATTTTTT-TTCTAATTTGATATTTAAAT
1 ATTTTTTGTT-TAATTTAATATTTAAAT
121124480 ATTTTTTGTTTAATTTAATATTTAAAT
1 ATTTTTTGTTTAATTTAATATTTAAAT
121124507 TTGATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTTTTGTTTAATTTAATATTTAAAT
Found at i:121124555 original size:31 final size:30
Alignment explanation
Indices: 121124483--121124565 Score: 112
Period size: 30 Copynumber: 2.7 Consensus size: 30
121124473 TTTAAATATT
* **
121124483 TTTTGTTTAATTTAATATTTAAATTTGATAA
1 TTTT-TTTAATTTAGTACCTAAATTTGATAA
*
121124514 TTTTTTTAATTTAGTACCTAAATTTGATAC
1 TTTTTTTAATTTAGTACCTAAATTTGATAA
121124544 TTTTTTCTAATTTAGTACCTAA
1 TTTTTT-TAATTTAGTACCTAA
121124566 TCTTTTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
30 28 0.60
31 19 0.40
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.55
Consensus pattern (30 bp):
TTTTTTTAATTTAGTACCTAAATTTGATAA
Found at i:121128249 original size:28 final size:27
Alignment explanation
Indices: 121128218--121128281 Score: 65
Period size: 30 Copynumber: 2.2 Consensus size: 27
121128208 AGAAAAATTT
** *
121128218 AATTAAATTCTCTTAAATTTTTTAAAAA
1 AATTAAA-TCTCAAAAATTTTCTAAAAA
121128246 AATTCATTAATCTCAAAAATTTTCTAAAAA
1 AATT-A--AATCTCAAAAATTTTCTAAAAA
121128276 AATTAA
1 AATTAA
121128282 TTAGACTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
27 1 0.03
28 4 0.13
29 2 0.07
30 21 0.70
31 2 0.07
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (27 bp):
AATTAAATCTCAAAAATTTTCTAAAAA
Found at i:121140171 original size:44 final size:44
Alignment explanation
Indices: 121140105--121140229 Score: 196
Period size: 44 Copynumber: 2.8 Consensus size: 44
121140095 CCCCGTCCAA
* * *
121140105 TACAGAGACGCCAAATCTGTTATATTTGATCTGCTCTCTGCCGC
1 TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
* *
121140149 TATAGAAACGTCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
*
121140193 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT
1 TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCT
121140230 ACTGTAAGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 73 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (44 bp):
TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
Found at i:121140312 original size:88 final size:88
Alignment explanation
Indices: 121140214--121140382 Score: 297
Period size: 88 Copynumber: 1.9 Consensus size: 88
121140204 CAAATCTGTT
121140214 ATCTTCGATCTGC-TCTACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCAA-CTTGTTCCCT
1 ATCTTCGATCTGCTTC-ACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCAATC-TGTTCCCT
121140277 ATAAGCACAGGGATGCCATGCTGAA
64 ATAAGCACAGGGATGCCATGCTGAA
*
121140302 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCAATCTGTTCCCTAT
121140367 AAGCACAGGGATGCCA
66 AAGCACAGGGATGCCA
121140383 AATCTACTGT
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
88 75 0.96
89 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (88 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCAATCTGTTCCCTAT
AAGCACAGGGATGCCATGCTGAA
Found at i:121140326 original size:44 final size:43
Alignment explanation
Indices: 121140259--121140463 Score: 168
Period size: 44 Copynumber: 4.7 Consensus size: 43
121140249 CAGATCTGCT
*
121140259 ATCTTCAA-CTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
1 ATCTTCAATC-TGTTCACTATAAGCACAGGGATGCCATGCTGAA
* * * * **
121140302 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCT
1 ATCTTCAATCTG-TTCACTATAAGCACAGGGATGCCATG--CTGAA
* *
121140347 ATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAAAT-CT-ACT
1 ATCTTCAATCTGTTCACTATAAGCACAGGGATGCC--ATGCTGA-A
* * *
121140391 GTTTTCAA-CTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
1 ATCTTCAATC-TGTTCACTATAAGCACAGGGATGCCATGCTGAA
* *
121140434 ATCTTCAACCTGTTTCACTGTAAGCACAGG
1 ATCTTCAATCTG-TTCACTATAAGCACAGG
121140464 AATGTCAGAC
Statistics
Matches: 129, Mismatches: 20, Indels: 25
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 21 0.16
44 91 0.71
45 14 0.11
46 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (43 bp):
ATCTTCAATCTGTTCACTATAAGCACAGGGATGCCATGCTGAA
Found at i:121140620 original size:68 final size:68
Alignment explanation
Indices: 121140536--121140715 Score: 279
Period size: 68 Copynumber: 2.6 Consensus size: 68
121140526 GATCTTCTTC
* * ** *
121140536 CGCTGAAACTTTAAGGAAATCTGCTGTAACTTTTAGTCGTTCCAAAGCCATTTCAGGAAGAAGAG
1 CGCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAAAGCCATTTCAGGAAGAAGAG
121140601 GTT
66 GTT
* ** *
121140604 CGCTGAAACTTCAAGGAGATCTGCTGTGGGTTTTAACCGCTCCAACGCCATTTCAGGAAGAAGAG
1 CGCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAAAGCCATTTCAGGAAGAAGAG
121140669 GTT
66 GTT
121140672 CGCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCA
1 CGCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCA
121140716 CTGCTGTTTA
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 100 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (68 bp):
CGCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAAAGCCATTTCAGGAAGAAGAG
GTT
Found at i:121140891 original size:132 final size:132
Alignment explanation
Indices: 121140743--121141701 Score: 1365
Period size: 132 Copynumber: 7.3 Consensus size: 132
121140733 AGGTTCTTCG
*
121140743 TCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
121140808 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
66 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
121140873 CA
131 CA
* * *
121140875 TCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGATCTCT-TT-CCCT
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC-CTGTTACCCT
* * * * * * * *
121140936 ACTGCTTAGGGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGA
64 ACTGCTTAGGGGGTTAAGGCT-TGTAAATTTGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-
* *
121140997 CCCTTCG
126 CCCATCA
* *
121141004 TCTTCGATCTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
*
121141069 TGCTTGGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
66 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
121141134 CA
131 CA
* * *
121141136 TCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGATCTCT-TT-CCCT
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC-CTGTTACCCT
* * * * * * * *
121141197 ACTGCTTAGGGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGA
64 ACTGCTTAGGGGGTTAAGGCT-TGTAAATTTGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-
* *
121141258 CCCTTCG
126 CCCATCA
121141265 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
121141330 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
66 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
121141395 CA
131 CA
*
121141397 TCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
*
121141462 TGCTTAGGGGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
66 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
121141527 CA
131 CA
* *
121141529 TCTTTGATCTGTTTTCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
* * *
121141594 TGCTTAGAGGTTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCAT
66 TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
*
121141659 TA
131 CA
*
121141661 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTG
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
121141702 CAATTTGGTC
Statistics
Matches: 733, Mismatches: 68, Indels: 52
0.86 0.08 0.06
Matches are distributed among these distances:
128 20 0.03
129 136 0.19
130 63 0.09
131 63 0.09
132 431 0.59
133 20 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (132 bp):
TCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTAC
TGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT
CA
Found at i:121141202 original size:261 final size:261
Alignment explanation
Indices: 121140738--121141700 Score: 1594
Period size: 261 Copynumber: 3.7 Consensus size: 261
121140728 GTTTTAGGTT
*
121140738 CTTCGTCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
1 CTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
121140803 CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
66 CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
*
121140868 CCCATCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTC
131 CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTC
121140933 CCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGAC
196 CCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGAC
121140998 C
261 C
* *
121140999 CTTCGTCTTCGATCTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
1 CTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
*
121141064 CCTACTGCTTGGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
66 CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
*
121141129 CCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTC
131 CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTC
121141194 CCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGAC
196 CCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGAC
121141259 C
261 C
121141260 CTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
1 CTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
121141325 CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
66 CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
* * *
121141390 CCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC-CTG
131 CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGATCTCT-
* * * * * * *
121141453 TTACCCTACTGCTTAGGGGGTTAAGGAT-TGTAAATTTGG-CTTGTTACCCTACTGCTTAGGGGG
193 TT-CCCTACTGCTTAGGGAGATAA-GATCTG-CAATTCGGTC-TGTTACCCTACCGATTAGGGGT
121141516 TTAA-AGCC
254 TTAAGA-CC
* * * *
121141524 CATCATCTTTGATCTGTTTTCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
1 CTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
* * *
121141589 CCTACTGCTTAGAGGTTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAG
66 CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
* *
121141654 CCCATTATCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCT
131 CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
121141701 GCAATTTGGT
Statistics
Matches: 666, Mismatches: 28, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
261 431 0.65
262 5 0.01
263 29 0.04
264 201 0.30
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (261 bp):
CTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTAC
CCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTC
CCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGAC
C
Found at i:121141717 original size:393 final size:394
Alignment explanation
Indices: 121140749--121141738 Score: 1375
Period size: 393 Copynumber: 2.5 Consensus size: 394
121140739 TTCGTCTTCA
121140749 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
* *
121140814 GGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTT
66 -GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATTATCTT
* * * * *
121140879 CAATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTC-ATCTTCGATCTCTTTCCCTACTGCTT
130 CGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGCAATCTTCGGTCTGTTACCCTACTGCTT
* * * * * *
121140943 AGGGAGATAA-GATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCT
195 AGGGGGTTAAGGATCTGAAATTCGGTCTGTTACCCTACCGATTAGGGGTTAAAGACCCATCATCT
*
121141007 TCGATCTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGC
260 TCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGC
* *
121141072 TTGGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCAT
325 TTAGGGGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCAT
121141137 CTTTG
390 CTTTG
* *
121141142 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGATCTCT-TT-CCCTACTGCT
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC-CTGTTACCCTACTGCT
* * * * * *
121141203 TAGGGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGA-TTA-GGGGTTTAAGACCC-T
64 TAGGG-GTTAAGGCT-TGTAAATTTGGCT-TGTTACCCTA-CTACTTAGGGGGTTAAAG-CCCAT
* * * *
121141262 TCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCC
124 T-ATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG-CAATCTTCGGTCTGTTACCC
* * * *
121141327 TACTGCTTAGGGGGTTAAGGCT-TGTAAATTTGG-CTTGTTACCCTACTGCTTAGGGGGTTAAAG
187 TACTGCTTAGGGGGTTAAGGATCTG-AAATTCGGTC-TGTTACCCTACCGATTA-GGGGTTAAAG
* *
121141390 -CCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGT
249 ACCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGT
121141454 TACCCTACTGCTTAGGGGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTA
314 TACCCTACTGCTTAGGGGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTA
121141519 AAGCCCATCATCTTTG
379 AAGCCCATCATCTTTG
*
121141535 ATCTGTTTTCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
*
121141600 GAGGTTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATTATCTT
66 G-GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATTATCTT
* * *
121141665 CGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAAT-TT-GGTCTGTTACCCTACCGATT
130 CGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGCAATCTTCGGTCTGTTACCCTACTGCTT
*
121141728 AGGGGTTTAAG
195 AGGGGGTTAAG
121141739 ACCCTTCGTC
Statistics
Matches: 520, Mismatches: 52, Indels: 50
0.84 0.08 0.08
Matches are distributed among these distances:
389 11 0.02
390 66 0.13
391 25 0.05
392 37 0.07
393 258 0.50
394 16 0.03
395 29 0.06
396 66 0.13
397 12 0.02
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (394 bp):
ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATTATCTTC
GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGCAATCTTCGGTCTGTTACCCTACTGCTTA
GGGGGTTAAGGATCTGAAATTCGGTCTGTTACCCTACCGATTAGGGGTTAAAGACCCATCATCTT
CGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCT
TAGGGGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATC
TTTG
Found at i:121141730 original size:42 final size:42
Alignment explanation
Indices: 121141668--121141815 Score: 127
Period size: 42 Copynumber: 3.5 Consensus size: 42
121141658 TTATCTTCGA
* * *
121141668 TCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTTGG
1 TCTGTTACCCTACCGATTAGGGGGATAAGATCTGCAATTTGG
** * * * *
121141710 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTC-GTCTTCGA
1 TCTGTTACCCTACCGATTAGGGGGATAAGA-TCTGCAAT-TT-GG
* * * * *
121141754 TCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGG
1 TCTGTTACCCTACCGATTAGGGGGATAAGATCTGCAATTTGG
*
121141796 TCTGTTACTCTACCGATTAG
1 TCTGTTACCCTACCGATTAG
121141816 AGGTTTAAGA
Statistics
Matches: 78, Mismatches: 24, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
42 43 0.55
43 9 0.12
44 26 0.33
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (42 bp):
TCTGTTACCCTACCGATTAGGGGGATAAGATCTGCAATTTGG
Found at i:121141762 original size:86 final size:86
Alignment explanation
Indices: 121141661--121141870 Score: 357
Period size: 86 Copynumber: 2.4 Consensus size: 86
121141651 AAGCCCATTA
* *
121141661 TCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTTGGTCTGTTACCCTACCGA
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGA
*
121141726 TTAGGGGTTTAAGACCCTTCG
66 TTAGAGGTTTAAGACCCTTCG
*
121141747 TCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACTCTACCGA
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGA
121141812 TTAGAGGTTTAAGACCCTTCG
66 TTAGAGGTTTAAGACCCTTCG
* * *
121141833 TCTTCGATCTATTTCCCTACTGCTTAGGGTGATGAGAT
1 TCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGAT
121141871 ATGTAGATCT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 117 1.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (86 bp):
TCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGA
TTAGAGGTTTAAGACCCTTCG
Found at i:121141766 original size:44 final size:44
Alignment explanation
Indices: 121141710--121141861 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 44
121141700 TGCAATTTGG
121141710 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
1 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
* * * * * * ** *
121141754 TCTGTTTCCCTACTGCTTAGGGAG-ATAAGA-TCTGC-AATTCGG
1 TCTGTTACCCTACCGATTAGGG-GTTTAAGACCCTTCGTCTTCGA
* *
121141796 TCTGTTACTCTACCGATTAGAGGTTTAAGACCCTTCGTCTTCGA
1 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
* * * *
121141840 TCTATTTCCCTACTGCTTAGGG
1 TCTGTTACCCTACCGATTAGGG
121141862 TGATGAGATA
Statistics
Matches: 78, Mismatches: 26, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
41 1 0.01
42 26 0.33
43 6 0.08
44 44 0.56
45 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (44 bp):
TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
Found at i:121141939 original size:304 final size:306
Alignment explanation
Indices: 121141273--121142002 Score: 780
Period size: 304 Copynumber: 2.4 Consensus size: 306
121141263 CGTCTTCGAT
* * * *
121141273 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCTGTAAAT-TT-GGCTTGTTACCCTACTACTTAGG
* ** * * * * ** *
121141338 GGGTTAAGGCTTGTAAATTTGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTT
64 GGGTTAAAGCTCAT-AATTTCGATCTGTTTCCCTACTGCTTAGGGGGAT-AAGATCATCATATTT
* * * *
121141402 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT
127 GATCTGTTACCCTACCGATTAGGGGGTTAAGACCTGTAAATCTTCAGCCTGTTACCCTACTGCTT
* * * * * *
121141467 AGGGGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCT
192 AGGGAGATAAGGATTGTAAATTCGGCTTGTTACCCTACCGATTAGAGGGTTAAAGCCCATCATCT
* * * * *
121141532 TTGATCTGTTTTCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
257 TCGATCTATTTCCCTACTGCTTAGGGGGATAAGATATGTAAATCTTCAGC
* * *
121141582 CTGTTACCCTACTGCTTAGAGGTTTAAGG-CTTGTAAATTTGGCTTGTTACCCTACTACTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTC-TGTAAATTTGGCTTGTTACCCTACTACTTAGGG
* *
121141646 GGTTAAAGCCCATTATCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATC-TGCA-ATTTG
65 GGTTAAAGCTCATAAT-TTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCAT-CATATTTG
* * ** * *
121141709 GTCTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCTACTGCT
128 ATCTGTTACCCTACCGATTAGGGGGTTAAGA-CCTGTAAATCTTCAG-CCTGTTACCCTACTGCT
* * * *
121141771 TAGGGAGATAA-GATCTG-CAATTCGG-TCTGTTACTCTACCGATTAGA-GGTTTAAGACCCTTC
191 TAGGGAGATAAGGAT-TGTAAATTCGGCT-TGTTACCCTACCGATTAGAGGGTTAAAG-CCCATC
* * * *
121141832 GTCTTCGATCTATTTCCCTACTGCTTAGGGTGATGAGATATGTAGATCTTCAGC
253 ATCTTCGATCTATTTCCCTACTGCTTAGGGGGATAAGATATGTAAATCTTCAGC
*
121141886 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTACCTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTACTTAGGGG
* * * * *
121141951 ATTAAAGCTCATCATATTCGATCTATTTCCCTACTGCTTAGGGTGATGAGAT
66 GTTAAAGCTCATAAT-TTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGAT
121142003 ATGTAGATCT
Statistics
Matches: 352, Mismatches: 59, Indels: 25
0.81 0.14 0.06
Matches are distributed among these distances:
303 8 0.02
304 179 0.51
305 32 0.09
306 34 0.10
307 42 0.12
308 25 0.07
309 32 0.09
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (306 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTACTTAGGGG
GTTAAAGCTCATAATTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCATCATATTTGATC
TGTTACCCTACCGATTAGGGGGTTAAGACCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
AGATAAGGATTGTAAATTCGGCTTGTTACCCTACCGATTAGAGGGTTAAAGCCCATCATCTTCGA
TCTATTTCCCTACTGCTTAGGGGGATAAGATATGTAAATCTTCAGC
Found at i:121142301 original size:45 final size:44
Alignment explanation
Indices: 121142114--121142590 Score: 348
Period size: 44 Copynumber: 10.4 Consensus size: 44
121142104 TGCTTAGGGG
* *
121142114 TAAGATCTGTAATCTTCAGTCTGCTCCACTGCGACTTCAGGGAGA
1 TAAGATTTGT-ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
** * * * * *
121142159 CGAGACTTGTAACTTC-GACCTGCTCTACTGCAACTTCAGAGAGA
1 TAAGATTTGTATCTTCAG-TCTGCTCCACTGCAACTTCAGGGAGA
* * * * * *
121142203 TAAGATCTGTAATTTTAGCTTTAATTTGTTCCACTGCAACTTCAGGGAAA
1 TAAGATTTGT-A---T--CTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
* * *
121142253 TAAGATTTGCTATCTTCAGTCTACTCTATTGCAACTTCAGGGAGA
1 TAAGATTTG-TATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
* * * * * *
121142298 TAAGACTTGTAACTTC-GACCTGCTCTATTGCAACTTCAGAGAGA
1 TAAGATTTGTATCTTCAG-TCTGCTCCACTGCAACTTCAGGGAGA
* * * * *
121142342 TAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAA
1 TAAGATTTGT-A--T--CTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
121142391 TAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
1 TAAGATTTG-TATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
* * * * *
121142436 TAAGACTTGTAACTTC-GACCTGCTCTACTGCAACTTCAGAGAGA
1 TAAGATTTGTATCTTCAG-TCTGCTCCACTGCAACTTCAGGGAGA
* * * * *
121142480 TAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
1 TAAGATTTGT-A---T--CTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
121142530 TAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
1 TAAGATTTG-TATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
* *
121142575 TAAGACTTGTAACTTC
1 TAAGATTTGTATCTTC
121142591 GACCTGCTCT
Statistics
Matches: 332, Mismatches: 74, Indels: 53
0.72 0.16 0.12
Matches are distributed among these distances:
43 3 0.01
44 113 0.34
45 113 0.34
47 3 0.01
49 32 0.10
50 66 0.20
51 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
TAAGATTTGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA
Found at i:121142568 original size:139 final size:139
Alignment explanation
Indices: 121142125--121142600 Score: 855
Period size: 139 Copynumber: 3.4 Consensus size: 139
121142115 AAGATCTGTA
* **
121142125 ATCTTCAGTCTGCTCCACTGCGACTTCAGGGAGACGAGACTTGTAACTTCGACCTGCTCTACTGC
1 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGC
*
121142190 AACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATTTGTTCCACTGCAACTTCAGGGAAATA
66 AACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATA
121142255 AGATTTGCT
131 AGATTTGCT
* * * *
121142264 ATCTTCAGTCTACTCTATTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTATTGC
1 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGC
* *
121142329 AACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATA
66 AACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATA
121142393 AGATTTGCT
131 AGATTTGCT
121142402 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGC
1 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGC
121142467 AACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATA
66 AACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATA
121142532 AGATTTGCT
131 AGATTTGCT
121142541 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCT
1 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCT
121142601 TGTAACACCC
Statistics
Matches: 320, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
138 131 0.41
139 189 0.59
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (139 bp):
ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTACTGC
AACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATA
AGATTTGCT
Found at i:121143649 original size:38 final size:39
Alignment explanation
Indices: 121143565--121143699 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
121143555 ACCAATATGG
*
121143565 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
121143604 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
121143642 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
121143683 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
121143700 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:121145277 original size:5 final size:5
Alignment explanation
Indices: 121145259--121145299 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
121145249 TTTCTTTTAT
121145259 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA
121145300 CTTAATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:121151435 original size:38 final size:39
Alignment explanation
Indices: 121151351--121151485 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
121151341 ACCAATATGG
*
121151351 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
121151390 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
121151428 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
121151469 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
121151486 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:121153063 original size:5 final size:5
Alignment explanation
Indices: 121153045--121153085 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
121153035 TTTCTTTTAT
121153045 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA
121153086 CTTAATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:121157529 original size:6 final size:5
Alignment explanation
Indices: 121157504--121157549 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
121157494 AATGCAAATG
*
121157504 ATGCA ATGCA ATGCA ATGCAA ATGCAA ATGC- ATGGA ATG-A ATGCA A
1 ATGCA ATGCA ATGCA ATGC-A ATGC-A ATGCA ATGCA ATGCA ATGCA A
121157550 AAGAAAGGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
4 7 0.19
5 19 0.51
6 11 0.30
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (5 bp):
ATGCA
Found at i:121157542 original size:21 final size:20
Alignment explanation
Indices: 121157494--121157550 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 20
121157484 GGGAAAGTCT
121157494 AATGCAAATG-ATGC-AATGC
1 AATGC-AATGAATGCAAATGC
121157513 AATGCAATGCAAATGCAAATGC
1 AATGCAATG--AATGCAAATGC
*
121157535 -ATGGAATGAATGCAAA
1 AATGCAATGAATGCAAA
121157551 AGAAAGGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 4 0.12
19 13 0.39
21 11 0.33
22 5 0.15
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (20 bp):
AATGCAATGAATGCAAATGC
Found at i:121185258 original size:15 final size:15
Alignment explanation
Indices: 121185235--121185268 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
121185225 TTGCTATTAG
*
121185235 ATTTCGTATTTATAT
1 ATTTAGTATTTATAT
121185250 ATTTAGTATTTATAT
1 ATTTAGTATTTATAT
121185265 -TTTA
1 ATTTA
121185269 ATTTGATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (15 bp):
ATTTAGTATTTATAT
Found at i:121188583 original size:17 final size:16
Alignment explanation
Indices: 121188563--121188605 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
121188553 ATGTGAGTAA
121188563 AAATATAATTATATAAT
1 AAATATAATTATA-AAT
*
121188580 AAATATATTTATAAAT
1 AAATATAATTATAAAT
*
121188596 AAATAAAATT
1 AAATATAATT
121188606 TTGATTGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATAATTATAAAT
Found at i:121189508 original size:11 final size:11
Alignment explanation
Indices: 121189494--121189541 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
121189484 TTTTTTAATG
121189494 TTATTTTCTTA
1 TTATTTTCTTA
**
121189505 TTATTTTCTCC
1 TTATTTTCTTA
121189516 TTATTTTAC-TA
1 TTATTTT-CTTA
*
121189527 TTATTTTATTA
1 TTATTTTCTTA
121189538 TTAT
1 TTAT
121189542 GTTGTCACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
11 29 0.97
12 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTTTCTTA
Found at i:121189564 original size:33 final size:33
Alignment explanation
Indices: 121189486--121189564 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
121189476 TTTTTTGTTT
* *
121189486 TTTTAATGTTATTTTCTTATTATTTTCTCCTTA
1 TTTTAATGTTATTTTATTATTATGTTCTCCTTA
* * *
121189519 TTTTACTATTATTTTATTATTATGTTGTCAC-TA
1 TTTTAATGTTATTTTATTATTATGTTCTC-CTTA
*
121189552 TTTTATTGTTATT
1 TTTTAATGTTATT
121189565 GTTTAAATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 37 0.97
34 1 0.03
ACGTcount: A:0.20, C:0.09, G:0.05, T:0.66
Consensus pattern (33 bp):
TTTTAATGTTATTTTATTATTATGTTCTCCTTA
Found at i:121189575 original size:22 final size:22
Alignment explanation
Indices: 121189528--121189575 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
121189518 ATTTTACTAT
* *
121189528 TATTTTATTATTATGTTGTCAC
1 TATTTTATTATTATGTTGTAAA
*
121189550 TATTTTATTGTTATTGTT-TAAA
1 TATTTTATTATTA-TGTTGTAAA
121189572 TATT
1 TATT
121189576 ATATAAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.25, C:0.04, G:0.08, T:0.62
Consensus pattern (22 bp):
TATTTTATTATTATGTTGTAAA
Found at i:121189628 original size:30 final size:30
Alignment explanation
Indices: 121189593--121189654 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
121189583 ACTTATTTTA
*
121189593 TTGTTAATTTTGTTATTATTTTAAAAGTAT
1 TTGTTAATTTTGTTATTATTTTAAAAATAT
121189623 TTGTTAATTTTGTTATTATTTTAAAAATAT
1 TTGTTAATTTTGTTATTATTTTAAAAATAT
121189653 TT
1 TT
121189655 ACTTGTTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAAATAT
Found at i:121189793 original size:11 final size:11
Alignment explanation
Indices: 121189777--121189807 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
121189767 TATATATATT
121189777 TAAAAATTATA
1 TAAAAATTATA
*
121189788 TAAAAATAATA
1 TAAAAATTATA
121189799 TAAAAATTA
1 TAAAAATTA
121189808 ATACATATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:121190050 original size:46 final size:46
Alignment explanation
Indices: 121189970--121190091 Score: 174
Period size: 46 Copynumber: 2.6 Consensus size: 46
121189960 AGCACCTCTA
* *
121189970 ATGCTAAGTAATACGGAAAAATAAATAGACGTAATAATCT-TCCAATC
1 ATGCTAAGTAATACGG-TAAATAAATAGATGTAATAATCTCT-CAATC
* * *
121190017 ATGCTAAGTAATATGGTAAATAAATAGATGTAATAATCTCTTAGTC
1 ATGCTAAGTAATACGGTAAATAAATAGATGTAATAATCTCTCAATC
121190063 ATGCTAAGTAATACGGTAAATAAATAGAT
1 ATGCTAAGTAATACGGTAAATAAATAGAT
121190092 CTATATCCCC
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
46 52 0.76
47 16 0.24
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.30
Consensus pattern (46 bp):
ATGCTAAGTAATACGGTAAATAAATAGATGTAATAATCTCTCAATC
Found at i:121192331 original size:27 final size:26
Alignment explanation
Indices: 121192290--121192342 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
121192280 AATATATGTA
* *
121192290 TTAAATTTTAAATTAATTTAAAATAT
1 TTAAATATTAAATTAATATAAAATAT
*
121192316 TTAAATATTAATATTAATATATAATAT
1 TTAAATATTAA-ATTAATATAAAATAT
121192343 ATAACACATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
TTAAATATTAAATTAATATAAAATAT
Found at i:121194144 original size:4 final size:4
Alignment explanation
Indices: 121194137--121194230 Score: 145
Period size: 4 Copynumber: 23.5 Consensus size: 4
121194127 AATTCTTTCT
** *
121194137 ATAC ATAC ATTAC ATAC ATAC ATAC ACGC ATGC ATAC AT-C ATAC ATAC
1 ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
121194185 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
121194231 GCAACCAAGA
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
3 3 0.04
4 77 0.92
5 4 0.05
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:121207428 original size:21 final size:21
Alignment explanation
Indices: 121207402--121207442 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
121207392 ATCTGCTCAA
* *
121207402 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
121207423 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
121207443 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:121219811 original size:18 final size:19
Alignment explanation
Indices: 121219788--121219825 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
121219778 GCTTTCTGAG
121219788 GCTTCT-TTAGGGCTCTCT
1 GCTTCTCTTAGGGCTCTCT
121219806 GCTTCTACCTTAGGGCTCTC
1 GCTTCT--CTTAGGGCTCTC
121219826 AGGCGGTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
21 11 0.65
ACGTcount: A:0.08, C:0.32, G:0.21, T:0.39
Consensus pattern (19 bp):
GCTTCTCTTAGGGCTCTCT
Found at i:121220767 original size:14 final size:14
Alignment explanation
Indices: 121220748--121220792 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
121220738 CTCCGTTCAC
121220748 ATTTCAGGATTCTG
1 ATTTCAGGATTCTG
**
121220762 ATTTC---ATTCAC
1 ATTTCAGGATTCTG
121220773 ATTTCAGGATTCTG
1 ATTTCAGGATTCTG
121220787 ATTTCA
1 ATTTCA
121220793 TGTGCTGTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 9 0.38
14 15 0.62
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.44
Consensus pattern (14 bp):
ATTTCAGGATTCTG
Found at i:121220771 original size:25 final size:25
Alignment explanation
Indices: 121220743--121220793 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
121220733 ACGAACTCCG
121220743 TTCACATTTCAGGATTCTGATTTCA
1 TTCACATTTCAGGATTCTGATTTCA
121220768 TTCACATTTCAGGATTCTGATTTCA
1 TTCACATTTCAGGATTCTGATTTCA
121220793 T
1 T
121220794 GTGCTGTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.45
Consensus pattern (25 bp):
TTCACATTTCAGGATTCTGATTTCA
Found at i:121222347 original size:29 final size:30
Alignment explanation
Indices: 121222303--121222372 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 30
121222293 ATTAATAAAA
*
121222303 ATAAAATTATACTTTAACCCTCT-AAAATT
1 ATAAAATTATAATTTAACCCTCTAAAAATT
* * * *
121222332 ATAAAATTTTAATTTAATCTTTTAAAAATT
1 ATAAAATTATAATTTAACCCTCTAAAAATT
*
121222362 ATAAAAATATA
1 ATAAAATTATA
121222373 CACTATTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATTATAATTTAACCCTCTAAAAATT
Found at i:121225610 original size:71 final size:71
Alignment explanation
Indices: 121225477--121225611 Score: 155
Period size: 71 Copynumber: 1.9 Consensus size: 71
121225467 TATGAAATGA
** * * * *****
121225477 TTATTTGTTTCTGACTTTGAGTTTGCTTATGTCTCGGTGCTTATGCTATTGATTTGTTAATTGAG
1 TTATTTGTTTCCAACTTTGAGTTTGCCTATGTCTCGGTGCCTATGCTATCGATGCACCAATTGAG
121225542 ATATGT
66 ATATGT
*
121225548 TTATTTGTTTCCAACTTTGAGTTTGCCTATGTC-CGGTTGCCTATGCTATCGGTGCACCAATTGA
1 TTATTTGTTTCCAACTTTGAGTTTGCCTATGTCTCGG-TGCCTATGCTATCGATGCACCAATTGA
121225612 TTTCCCTGTT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
70 3 0.06
71 49 0.94
ACGTcount: A:0.17, C:0.16, G:0.21, T:0.47
Consensus pattern (71 bp):
TTATTTGTTTCCAACTTTGAGTTTGCCTATGTCTCGGTGCCTATGCTATCGATGCACCAATTGAG
ATATGT
Found at i:121226520 original size:15 final size:15
Alignment explanation
Indices: 121226497--121226530 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
121226487 GGTTTTAATA
* *
121226497 GCGGTTATGGCGGTG
1 GCGGATATGGAGGTG
121226512 GCGGATATGGAGGTG
1 GCGGATATGGAGGTG
121226527 GCGG
1 GCGG
121226531 TGGCGGCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.56, T:0.21
Consensus pattern (15 bp):
GCGGATATGGAGGTG
Found at i:121226530 original size:21 final size:21
Alignment explanation
Indices: 121226504--121226583 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
121226494 ATAGCGGTTA
*
121226504 TGGCGGTGGCGGATATGGAGG
1 TGGCGGTGGCGGCTATGGAGG
*
121226525 TGGCGGTGGCGGCTATGGTGG
1 TGGCGGTGGCGGCTATGGAGG
* * *
121226546 GGGCAGTGGTGGCTATGGAGG
1 TGGCGGTGGCGGCTATGGAGG
* * *
121226567 TGGTGGGGGGGGCTATG
1 TGGCGGTGGCGGCTATG
121226584 ACAGAAATGA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.10, C:0.10, G:0.59, T:0.21
Consensus pattern (21 bp):
TGGCGGTGGCGGCTATGGAGG
Found at i:121227284 original size:30 final size:30
Alignment explanation
Indices: 121227240--121227303 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
121227230 CTAATTTTAA
* *
121227240 AAAAAATATTAAAAATTTATATAAACTTGT
1 AAAAAATATAAAAAAATTATATAAACTTGT
* *
121227270 AAAAACTATAAAAAAATTATATAAACTTTT
1 AAAAAATATAAAAAAATTATATAAACTTGT
121227300 AAAA
1 AAAA
121227304 TTTTTTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (30 bp):
AAAAAATATAAAAAAATTATATAAACTTGT
Found at i:121231538 original size:34 final size:34
Alignment explanation
Indices: 121231498--121231565 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
121231488 AGATCTTCAG
121231498 ATATAAGAAATCTGTCCAATCTTTCTTTAACTAA
1 ATATAAGAAATCTGTCCAATCTTTCTTTAACTAA
121231532 ATATAAGAAATCTGTCCAATCTTTCTTTAACTAA
1 ATATAAGAAATCTGTCCAATCTTTCTTTAACTAA
121231566 GTCAGTGCCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (34 bp):
ATATAAGAAATCTGTCCAATCTTTCTTTAACTAA
Found at i:121233364 original size:36 final size:36
Alignment explanation
Indices: 121233317--121233388 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
121233307 ATCAAATCCG
121233317 AACGAGTAGGTTGGTAAATATTATATTTAATATTTA
1 AACGAGTAGGTTGGTAAATATTATATTTAATATTTA
121233353 AACGAGTAGGTTGGTAAATATTATATTTAATATTTA
1 AACGAGTAGGTTGGTAAATATTATATTTAATATTTA
121233389 CGAGTTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.42
Consensus pattern (36 bp):
AACGAGTAGGTTGGTAAATATTATATTTAATATTTA
Found at i:121234811 original size:28 final size:28
Alignment explanation
Indices: 121234771--121234849 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
121234761 GCAATCAAAT
* * *
121234771 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
121234799 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
121234827 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
121234850 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:121236834 original size:57 final size:57
Alignment explanation
Indices: 121236765--121237168 Score: 652
Period size: 57 Copynumber: 7.1 Consensus size: 57
121236755 AAGTGAACAT
* *
121236765 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
121236822 AGGCACTGTGTGTG-GAGTTCTGTAACCGAGCACTGTGTGTGCGAGAT-GAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCG-GTTGTTG
*
121236878 AGGCACTGTGTGTACGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
121236935 AGGCACTGTGTGT-CGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
121236991 AGGCACTGTGTGTGTGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
121237048 AGGCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
** * **
121237105 AGGCACTGCATGTGCGAGTTCCGTAACCAAGCACTGTGTGTGTAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
121237162 GGGCACT
1 AGGCACT
121237169 AAGTGTGTTA
Statistics
Matches: 327, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
55 1 0.00
56 107 0.33
57 218 0.67
58 1 0.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Done.