Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 417 of 427
Found at i:121236944 original size:113 final size:113
Alignment explanation
Indices: 121236765--121237168 Score: 641
Period size: 113 Copynumber: 3.6 Consensus size: 113
121236755 AAGTGAACAT
*
121236765 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
121236830 TGTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGAT-GAGTTGTTG
66 TGTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCG-GTTGTTG
* *
121236878 AGGCACTGTGTGTACGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
* *
121236943 TGTGTCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
66 TGTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
121236991 AGGCACTGTGTGTGTGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
121237056 TGTGTGCGAGTT-TCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
66 TGTGTG-GAGTTCT-GTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
** * * *
121237105 AGGCACTGCATGTGCGAGTTCCGTAACCAAGCACTGTGTGTGTAAGATCGGTTGTTGGGGCACT
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACT
121237169 AAGTGTGTTA
Statistics
Matches: 268, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
113 172 0.64
114 96 0.36
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (113 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
TGTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:121237047 original size:170 final size:169
Alignment explanation
Indices: 121236765--121237168 Score: 677
Period size: 170 Copynumber: 2.4 Consensus size: 169
121236755 AAGTGAACAT
*
121236765 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGT-CGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
*
121236830 TGTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATGAGTTGTTGAGGCACTGTGTGTACGA
65 TGTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTACGA
121236895 GTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
130 GTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
121236935 AGGCACTGTGTGTCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGT
1 AGGCACTGTGTGTCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGT
*
121237000 GTGTGTGAGTT-TCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCG
66 GTGTG-GAGTTCT-GTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTACG
*
121237064 AGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
129 AGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
121237105 AGGCACTGCATGTG-CGAGTTCCGTAACCAAGCACTGTGTGTGTAAGATCGGTTGTTGGGGCACT
1 AGGCACTG--TGTGTCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACT
121237169 AAGTGTGTTA
Statistics
Matches: 221, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
169 56 0.25
170 115 0.52
171 46 0.21
172 4 0.02
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (169 bp):
AGGCACTGTGTGTCGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGT
GTGTGGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTACGAG
TTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:121237120 original size:29 final size:29
Alignment explanation
Indices: 121236795--121237122 Score: 253
Period size: 28 Copynumber: 11.6 Consensus size: 29
121236785 CCGTAACCGA
*
121236795 GCACTGTGTGTGCAAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
121236824 GCACTGTGTGTG-GAGTTCTGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
121236851 GCACTGTGTGTGCGAGAT-GAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCG-GTTGTTGAG
* * * ****
121236880 GCACTGTGTGTACGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
121236908 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
121236937 GCACTGTGTGT-CGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
121236964 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
121236993 GCACTGTGTGTGTGAGTTTC-GTAACCGA-
1 GCACTGTGTGTGCGAG-ATCGGTTGTTGAG
*
121237021 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* ****
121237050 GCACTGTGTGTGCGAGTTTC-GTAACCGA-
1 GCACTGTGTGTGCGAG-ATCGGTTGTTGAG
121237078 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
**
121237107 GCACTGCATGTGCGAG
1 GCACTGTGTGTGCGAG
121237123 TTCCGTAACC
Statistics
Matches: 223, Mismatches: 63, Indels: 26
0.71 0.20 0.08
Matches are distributed among these distances:
27 27 0.12
28 96 0.43
29 96 0.43
30 4 0.02
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:121242140 original size:28 final size:28
Alignment explanation
Indices: 121242108--121242177 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
121242098 TATGGTACTC
*
121242108 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
121242136 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
121242164 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
121242178 CGAATGATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:121245019 original size:20 final size:18
Alignment explanation
Indices: 121244976--121245016 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
121244966 TCTTTAATAA
*
121244976 TATTATAATTTCATTTTT
1 TATTATAATATCATTTTT
121244994 TATTATAATATCATTTTT
1 TATTATAATATCATTTTT
121245012 T-TTAT
1 TATTAT
121245017 TATGAGAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTATAATATCATTTTT
Found at i:121258382 original size:24 final size:24
Alignment explanation
Indices: 121258355--121258408 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
121258345 TTTTAATTAA
121258355 ATTTATCCT-GTATAAT-TTAAATTT
1 ATTTAT-CTAGTAT-ATGTTAAATTT
* *
121258379 ATTTGTCTAGTGTATGTTAAATTT
1 ATTTATCTAGTATATGTTAAATTT
121258403 ATTTAT
1 ATTTAT
121258409 GTTGTGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.56
Consensus pattern (24 bp):
ATTTATCTAGTATATGTTAAATTT
Found at i:121258415 original size:24 final size:23
Alignment explanation
Indices: 121258369--121258422 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
121258359 ATCCTGTATA
*
121258369 ATTTAAATTTATTTGTCTAGTGT
1 ATTTAAATTTATTTATCTAGTGT
* *
121258392 ATGTTAAATTTATTTATGTTGTGT
1 AT-TTAAATTTATTTATCTAGTGT
121258416 ATTTAAA
1 ATTTAAA
121258423 AAAGTGAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.56
Consensus pattern (23 bp):
ATTTAAATTTATTTATCTAGTGT
Found at i:121259666 original size:29 final size:30
Alignment explanation
Indices: 121259634--121259707 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 30
121259624 TTAGTAATGC
*
121259634 TAAAATTATATTTTAACC-TTTTAAAATAA
1 TAAAATTATATTTTAACCATTTAAAAATAA
* * *
121259663 T-AAATTTTAATTTAACCATTTAAAAATTA
1 TAAAATTATATTTTAACCATTTAAAAATAA
* *
121259692 TAAAAATATATGTTAA
1 TAAAATTATATTTTAA
121259708 GTATATATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 14 0.40
29 11 0.31
30 10 0.29
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (30 bp):
TAAAATTATATTTTAACCATTTAAAAATAA
Found at i:121277415 original size:21 final size:21
Alignment explanation
Indices: 121277391--121277431 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
121277381 CTTAAATTTG
121277391 AAGATTTT-TTCTTGAAAAAAT
1 AAGATTTTCTT-TTGAAAAAAT
121277412 AAGATTTTCTTTTGAAAAAA
1 AAGATTTTCTTTTGAAAAAA
121277432 ATTAAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (21 bp):
AAGATTTTCTTTTGAAAAAAT
Found at i:121278348 original size:17 final size:17
Alignment explanation
Indices: 121278326--121278360 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
121278316 AAATGAATTG
*
121278326 ATATGATTAAAATTTAT
1 ATATGAATAAAATTTAT
121278343 ATATGAATAAAATTTAT
1 ATATGAATAAAATTTAT
121278360 A
1 A
121278361 GGAGCCTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (17 bp):
ATATGAATAAAATTTAT
Found at i:121281172 original size:12 final size:12
Alignment explanation
Indices: 121281155--121281179 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121281145 CGATATTTGT
121281155 ATTTTATTATTA
1 ATTTTATTATTA
121281167 ATTTTATTATTA
1 ATTTTATTATTA
121281179 A
1 A
121281180 AATTTTAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTTTATTATTA
Found at i:121290735 original size:23 final size:22
Alignment explanation
Indices: 121290684--121290743 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
121290674 TTTCGGGAAG
*
121290684 AAAGAAGGAGAGGAGAAGAAGAA
1 AAAGAAAGA-AGGAGAAGAAGAA
121290707 AAAGAAAAGAAGGAGAAGAAGAA
1 AAAG-AAAGAAGGAGAAGAAGAA
** *
121290730 GGAGAAGGAAGGAG
1 AAAGAAAGAAGGAG
121290744 GCGGTTGGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 9 0.28
23 19 0.59
24 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (22 bp):
AAAGAAAGAAGGAGAAGAAGAA
Found at i:121291121 original size:30 final size:31
Alignment explanation
Indices: 121291077--121291137 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
121291067 ACTTAACAAG
*
121291077 CAAATACCTCTAAAATAATAA-CAAAATTAA
1 CAAATACCTCTAAAATAATAATAAAAATTAA
* *
121291107 CAAATGCCTTTAAAATAATAATAAAAATTAA
1 CAAATACCTCTAAAATAATAATAAAAATTAA
121291138 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.26
Consensus pattern (31 bp):
CAAATACCTCTAAAATAATAATAAAAATTAA
Found at i:121292081 original size:13 final size:14
Alignment explanation
Indices: 121292065--121292100 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
121292055 CAATCTCATA
121292065 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
121292078 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
121292091 TCTC-ATTTCA
1 TCTCAATTTCA
121292101 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:121292090 original size:18 final size:19
Alignment explanation
Indices: 121292052--121292092 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
121292042 TGGTTCATGT
121292052 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
121292071 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
121292089 TTTC
1 TTTC
121292093 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:121292754 original size:15 final size:15
Alignment explanation
Indices: 121292734--121292780 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
121292724 TAATAAATAT
121292734 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
121292749 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
121292764 TTCAATCAATATAAA
1 TTCAATCAATATAAA
121292779 TT
1 TT
121292781 TAATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:121293987 original size:4 final size:4
Alignment explanation
Indices: 121293972--121294005 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
121293962 GATTTTCCCT
*
121293972 TTTC TCTC TTTC TTTC TTTC TTTCC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC T
121294006 CCCCTGTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:121294081 original size:13 final size:13
Alignment explanation
Indices: 121294063--121294094 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
121294053 TTTTATTTCA
121294063 TTTATTTCTTTAT
1 TTTATTTCTTTAT
121294076 TTTATTTCTTTAT
1 TTTATTTCTTTAT
121294089 TTTATT
1 TTTATT
121294095 ATTAAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTCTTTAT
Found at i:121294905 original size:39 final size:39
Alignment explanation
Indices: 121294862--121294940 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
121294852 TTTTGGTACA
* *
121294862 TAGTTTTTGTATTATATTATTTTGGAATTTTTTTATTTT
1 TAGTTTTTGGATTATATTATTTTGAAATTTTTTTATTTT
121294901 TAGTTTTTGGATTATATTATTTTGAAATTTTTTTATTTT
1 TAGTTTTTGGATTATATTATTTTGAAATTTTTTTATTTT
121294940 T
1 T
121294941 TTTTACTACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (39 bp):
TAGTTTTTGGATTATATTATTTTGAAATTTTTTTATTTT
Found at i:121295869 original size:14 final size:15
Alignment explanation
Indices: 121295850--121295878 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
121295840 AAAAAATAAA
121295850 AAAAATA-TAAAATT
1 AAAAATATTAAAATT
121295864 AAAAATATTAAAATT
1 AAAAATATTAAAATT
121295879 GATATAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATATTAAAATT
Found at i:121296008 original size:20 final size:20
Alignment explanation
Indices: 121295985--121296032 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
121295975 ATATTTAAAA
121295985 TAAAAAAGTAATA-AAATTCT
1 TAAAAAA-TAATAGAAATTCT
*
121296005 TAAAAAATAATAGAAATT-G
1 TAAAAAATAATAGAAATTCT
121296024 TAAAAAATA
1 TAAAAAATA
121296033 TAAAAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
TAAAAAATAATAGAAATTCT
Found at i:121296369 original size:20 final size:23
Alignment explanation
Indices: 121296330--121296370 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
121296320 GTCAAATTCA
121296330 ATTAAATAATATATAAAAAACAT
1 ATTAAATAATATATAAAAAACAT
121296353 ATTAAA-AATA-A-AAAAAAC
1 ATTAAATAATATATAAAAAAC
121296371 GGGTTCAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 1 0.06
22 4 0.22
23 6 0.33
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (23 bp):
ATTAAATAATATATAAAAAACAT
Found at i:121296575 original size:21 final size:22
Alignment explanation
Indices: 121296551--121296597 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
121296541 TTTTTTATTA
* *
121296551 TTTTTAT-AGAATTTTAATACG
1 TTTTTATAAAAATTTAAATACG
*
121296572 TTTTTATAAAAATTTAAATATG
1 TTTTTATAAAAATTTAAATACG
121296594 TTTT
1 TTTT
121296598 ATTAAATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (22 bp):
TTTTTATAAAAATTTAAATACG
Found at i:121296585 original size:22 final size:21
Alignment explanation
Indices: 121296551--121296607 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
121296541 TTTTTTATTA
* *
121296551 TTTTTATAGAATTTTAATACG
1 TTTTTATAAAATTTAAATACG
*
121296572 TTTTTATAAAAATTTAAATATG
1 TTTTTAT-AAAATTTAAATACG
*
121296594 -TTTTATTAAATTTA
1 TTTTTATAAAATTTA
121296608 TATTAAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 7 0.23
21 13 0.42
22 11 0.35
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (21 bp):
TTTTTATAAAATTTAAATACG
Found at i:121301927 original size:19 final size:19
Alignment explanation
Indices: 121301888--121301932 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
121301878 GAATAAATCC
* *
121301888 TTATAATATAATTACTGTT
1 TTATAAAATAATTAATGTT
*
121301907 TTATAAAATAATTAATTTT
1 TTATAAAATAATTAATGTT
121301926 TTGATAA
1 TT-ATAA
121301933 TTTTATAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (19 bp):
TTATAAAATAATTAATGTT
Found at i:121302590 original size:169 final size:169
Alignment explanation
Indices: 121302356--121302664 Score: 480
Period size: 169 Copynumber: 1.8 Consensus size: 169
121302346 TATAACTTAA
* * *
121302356 AAGTTTATTGGTGAAGAGAAAAAATTTGAAAATATGTCTTACCAAAATAAAATTTTTAAGACATT
1 AAGTTTACTGGTGAAGAGAAAAAATTTGAAAATACGTCTTACCAAAATAAAATTTGTAAGACATT
* *
121302421 TTCTTAAAATAAACGTTTATTTTCCCGTGTTTTGAAAAAAGATTTTATCGT-AGGAAGTTATTTT
66 TTCCTAAAATAAACGTTTATTTTCCCGTGTTTTG-AAAAAGATTTTATCGTGA-GAAATTATTTT
121302485 CAGCCAAACAAAAAGCTTTTACAAGTAAACAAACACAGCCT
129 CAGCCAAACAAAAAGCTTTTACAAGTAAACAAACACAGCCT
* **
121302526 AAGTTTACTGGTGAAGAGAAAAACTTT-AGAAA-ACGTCTTATTAAAATAAAATTTGTAAGACAT
1 AAGTTTACTGGTGAAGAGAAAAAATTTGA-AAATACGTCTTACCAAAATAAAATTTGTAAGACAT
* *
121302589 TTTCCTAAAATAAACGTTTATTTTCCCGTGTTTTGTAAAAGGTTTTATCGTGAGAAATTATTTTC
65 TTTCCTAAAATAAACGTTTATTTTCCCGTGTTTTGAAAAAGATTTTATCGTGAGAAATTATTTTC
121302654 AGCCAAACAAA
130 AGCCAAACAAA
121302665 TATCAGAAAA
Statistics
Matches: 127, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
168 36 0.28
169 63 0.50
170 28 0.22
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (169 bp):
AAGTTTACTGGTGAAGAGAAAAAATTTGAAAATACGTCTTACCAAAATAAAATTTGTAAGACATT
TTCCTAAAATAAACGTTTATTTTCCCGTGTTTTGAAAAAGATTTTATCGTGAGAAATTATTTTCA
GCCAAACAAAAAGCTTTTACAAGTAAACAAACACAGCCT
Found at i:121312791 original size:21 final size:21
Alignment explanation
Indices: 121312765--121312829 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
121312755 CAGCAATGCA
*
121312765 GTTGATGCGCTGGAGGGAAAG
1 GTTGATGCGCTGGATGGAAAG
* *
121312786 GTTGATGTGCTGGATGGAAAA
1 GTTGATGCGCTGGATGGAAAG
*
121312807 GTCGATGCGCTGGATGGAAAG
1 GTTGATGCGCTGGATGGAAAG
121312828 GT
1 GT
121312830 GGATTACAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.25, C:0.09, G:0.43, T:0.23
Consensus pattern (21 bp):
GTTGATGCGCTGGATGGAAAG
Found at i:121312957 original size:93 final size:92
Alignment explanation
Indices: 121312811--121313089 Score: 425
Period size: 93 Copynumber: 3.0 Consensus size: 92
121312801 GGAAAAGTCG
*
121312811 ATGCGCTGGATGGAAAGGTGGATTACAGCAGTCAGATAGTTCATGAAATCAAGCCAGAGCAGAAA
1 ATGCGCTGGATGGAAAGGTGGATTACA-CAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
* *
121312876 GATATCTCGAGAGAGGATGTAGATTCCC
65 GATATCTCGAGGGAGGATGTAGATCCCC
* * *
121312904 ATGTGCTGGATGGAAAGGTGGATTACACCAGTCAGATAGGTCATCAAAACAAGCCAGAGCAGAAA
1 ATGCGCTGGATGGAAAGGTGGATTACA-CAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
121312969 GATATC-CTGAGGGAGGATGTAGATCCCC
65 GATATCTC-GAGGGAGGATGTAGATCCCC
* *
121312997 ATGCACTGGATGGAAAGGTGGATTATGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
1 ATGCGCTGGATGGAAAGGTGGATTA-CACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
* *
121313062 GATATCTTGAGGGAAGATGTAGATCCCC
65 GATATCTCGAGGGAGGATGTAGATCCCC
121313090 TTAGAATTCA
Statistics
Matches: 169, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
92 1 0.01
93 167 0.99
94 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (92 bp):
ATGCGCTGGATGGAAAGGTGGATTACACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAAG
ATATCTCGAGGGAGGATGTAGATCCCC
Found at i:121313812 original size:54 final size:54
Alignment explanation
Indices: 121313730--121313841 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
121313720 GAGCTGTGAT
* * *
121313730 TTCAAAGGATGTTTCATCCAAGCAAAAAGTTCAGAAGGTTGACGATACAAAGAC
1 TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAAAAGGTTGACCATACAAAGAC
* * * *
121313784 TTCAAAGGATTTTTCATCCGAGCAAAAAGGTCAAAAGGTTGACCTTACAAAGCC
1 TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAAAAGGTTGACCATACAAAGAC
121313838 TTCA
1 TTCA
121313842 GACTATCCAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAAAAGGTTGACCATACAAAGAC
Found at i:121315450 original size:45 final size:45
Alignment explanation
Indices: 121315386--121315487 Score: 159
Period size: 45 Copynumber: 2.3 Consensus size: 45
121315376 CAGCTAGTGT
* *
121315386 CCCACTTCCTCCTCCACCTTCACCACCCTCATCAGCAACTACTGC
1 CCCACTTCCTCCTCCACCTTCACCACCCTCATCAACAACTACTAC
* * *
121315431 CCCACATCCTCCTCCACCTTCACCACCCTCTTCAACGACTACTAC
1 CCCACTTCCTCCTCCACCTTCACCACCCTCATCAACAACTACTAC
121315476 CCCACTTCCTCC
1 CCCACTTCCTCC
121315488 AACCTCACCA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.20, C:0.55, G:0.03, T:0.23
Consensus pattern (45 bp):
CCCACTTCCTCCTCCACCTTCACCACCCTCATCAACAACTACTAC
Found at i:121315499 original size:42 final size:44
Alignment explanation
Indices: 121315362--121315513 Score: 139
Period size: 45 Copynumber: 3.5 Consensus size: 44
121315352 CTCCGTCTTT
* * * ** *
121315362 ACCATCCTCTTCAACAGCTAGTGTCCCACTTCCTCCTCCACCTTC
1 ACCACCCTCTTCAACAACTACTACCCCACAT-CTCCTCCACCTTC
* * *
121315407 ACCACCCTCATCAGCAACTACTGCCCCACATCCTCCTCCACCTTC
1 ACCACCCTCTTCAACAACTACTACCCCACAT-CTCCTCCACCTTC
*
121315452 ACCACCCTCTTCAACGACTACTACCCCAC-T-TCCTCCAACC-TC
1 ACCACCCTCTTCAACAACTACTACCCCACATCTCCTCC-ACCTTC
* * *
121315494 ACCACCTTTTTCAACTACTA
1 ACCACCCTCTTCAACAACTA
121315514 TTGCCTTGTC
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
42 25 0.27
43 3 0.03
44 1 0.01
45 63 0.68
ACGTcount: A:0.22, C:0.49, G:0.04, T:0.25
Consensus pattern (44 bp):
ACCACCCTCTTCAACAACTACTACCCCACATCTCCTCCACCTTC
Found at i:121315537 original size:84 final size:84
Alignment explanation
Indices: 121315439--121315669 Score: 268
Period size: 84 Copynumber: 2.8 Consensus size: 84
121315429 GCCCCACATC
* * ** *
121315439 CTCCTCCACCTTCACCACCCTCTTCAACGACTACTACCCCACTTCCTCCAACCTCACCACCTTTT
1 CTCCTCCATCTTCACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACCTCACCACCCTTT
121315504 TCAACTACTATTGCCTTGT
66 TCAACTACTATTGCCTTGT
* ** * * ***
121315523 CTCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACTTCCTCCATTTTCACCACCCTTT
1 CTCCTCCATCTTCACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACCTCACCACCCTTT
121315588 TCAACTACTATTGCCTTGT
66 TCAACTACTATTGCCTTGT
* ** * *
121315607 CTCCTCCATC-TCTACCACCCCCACCAATGTGTAGTACTCCACTTCCTCC-ACCTTCACCACCCT
1 CTCCTCCATCTTC-ACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACC-TCACCACCCT
121315670 CTTTGACTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
83 2 0.02
84 127 0.98
ACGTcount: A:0.19, C:0.46, G:0.05, T:0.30
Consensus pattern (84 bp):
CTCCTCCATCTTCACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACCTCACCACCCTTT
TCAACTACTATTGCCTTGT
Found at i:121315570 original size:42 final size:42
Alignment explanation
Indices: 121315524--121315668 Score: 127
Period size: 42 Copynumber: 3.5 Consensus size: 42
121315514 TTGCCTTGTC
121315524 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
1 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
* **** * * * **
121315566 TCCTCCATTTTCACCACCCTTTTCAA---CTACTATTGCCTTGT
1 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACT-CC-ACT
121315607 CTCCTCCATC-TCTACCACCCCCACCAATGTGTAGTACTCCACT
1 -TCCTCCATCTTC-ACCACCCCCACCAATGTGTAGTACTCCACT
*
121315650 TCCTCCACCTTCACCACCC
1 TCCTCCATCTTCACCACCC
121315669 TCTTTGACTA
Statistics
Matches: 74, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
39 5 0.07
40 2 0.03
41 3 0.04
42 54 0.73
43 3 0.04
44 2 0.03
45 5 0.07
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (42 bp):
TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
Found at i:121315684 original size:84 final size:84
Alignment explanation
Indices: 121315477--121315669 Score: 327
Period size: 84 Copynumber: 2.3 Consensus size: 84
121315467 GACTACTACC
*
121315477 CCACTTCCTCCAACC-TCACCACCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
1 CCACTTCCTCC-ACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
121315541 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
**
121315561 CCACTTCCTCCATTTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATC-TCTACCAC
1 CCACTTCCTCCACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTC-ACCAC
121315625 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
121315645 CCACTTCCTCCACCTTCACCACCCT
1 CCACTTCCTCCACCTTCACCACCCT
121315670 CTTTGACTAA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
83 3 0.03
84 99 0.97
ACGTcount: A:0.19, C:0.45, G:0.05, T:0.31
Consensus pattern (84 bp):
CCACTTCCTCCACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCACC
CCCACCAATGTGTAGTACT
Found at i:121315719 original size:84 final size:85
Alignment explanation
Indices: 121315477--121315756 Score: 277
Period size: 84 Copynumber: 3.3 Consensus size: 85
121315467 GACTACTACC
* * * * * *
121315477 CCACTTCCTCCAACC-TCACCA-CCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCA
1 CCACTTCCTCC-ACCTTCACCACCCTCTTTCAACTAATATTGCCATGTCTCCTCCAGCTCCACAA
121315540 CCCCCACCAATGTGTAGTACT
65 CCCCCACCAATGTGTAGTACT
** * * * * *
121315561 CCACTTCCTCCATTTTCACCACCCT-TTTCAACTACTATTGCCTTGTCTCCTCCATCTCTACCAC
1 CCACTTCCTCCACCTTCACCACCCTCTTTCAACTAATATTGCCATGTCTCCTCCAGCTCCACAAC
121315625 CCCCACCAATGTGTAGTACT
66 CCCCACCAATGTGTAGTACT
* *
121315645 CCACTTCCTCCACCTTCACCACCCTCTTT-GACTAATATTGTCCCAT-T-TCCTCTAGCTCCACA
1 CCACTTCCTCCACCTTCACCACCCTCTTTCAACTAATATTG--CCATGTCTCCTCCAGCTCCACA
* * * *
121315707 ACTCCCATCAATGTCTAGTGC-
64 ACCCCCACCAATGTGTAGTACT
* * *
121315728 CTCACTTCTTCGACCTTCATCACCCTCTT
1 C-CACTTCCTCCACCTTCACCACCCTCTT
121315757 CGGTTACTAG
Statistics
Matches: 170, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
83 2 0.01
84 158 0.93
85 7 0.04
86 3 0.02
ACGTcount: A:0.19, C:0.42, G:0.06, T:0.33
Consensus pattern (85 bp):
CCACTTCCTCCACCTTCACCACCCTCTTTCAACTAATATTGCCATGTCTCCTCCAGCTCCACAAC
CCCCACCAATGTGTAGTACT
Found at i:121316040 original size:216 final size:207
Alignment explanation
Indices: 121315834--121316542 Score: 673
Period size: 198 Copynumber: 3.4 Consensus size: 207
121315824 CTCGTTTCCT
* * * *
121315834 CCTCCATCTTCGCCACCCTCCTTGATGACTAGTGCCCCACCTCCTCCATCTCCACTACCCCCATC
1 CCTCC-TCTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
* * * * *
121315899 AATTTCTAGCACCCCACCTCCTCCCCCATCGGTATCTACTGCTCCACTTCCTCTTTCACCTTCAC
65 AATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCAC
*
121315964 AAACCACTTTGATGACTAGTGGCCCACCTCCTTCACCTTCACTACCATCTCCACCTCCCACATTG
130 AAACCACTTTGATGACTAGT-GCCCACCTCCTCCACCTTC-CTACCATCTCCACCTCCCACATTG
*
121316029 ATGTCTA-CTGCCCCA
193 ATGTCTAGC-ACCCCA
* * * * * ***
121316044 CTTCCTCCTCCACCTTCACCACCCTCTGCAACGACTAGTGCCCCACCTCTTTTGTCTCCACCACC
1 CCTCCT-CTTCACC--AACC-TCCT-TG--ACGACTAGTGCCCCACCTCCTCCATCTCCACCACC
* * * * * * * *
121316109 CCTATCAATATCTAGCATCCAACCTCTTCCCTCATCGATGTCTACTACTTTAATTCCT-TGTTCT
59 CCCATCAATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCT-TTCA
* * ** *
121316173 TCTTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATC-TCC-ACCA-C-CC-CCGT--
123 CCTTCACAAACCACTTTGATGACTAGTGCCC-ACCTCCTCCACCTTCCTACCATCTCCACC-TCC
121316231 CA-A-T-A--TCTAGCACCCCA
186 CACATTGATGTCTAGCACCCCA
* * *
121316248 CCTCCTCTTTCACCAACC-ACTTCGATGACTAGTACCCCACCTCCTCCATCTCCACCACCCCCAT
1 CCTCCTC-TTCACCAACCTCCTT-GACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCAT
* * * *
121316312 CAATATCTAGCACCCCACCTTCTCCCCCATCTATGTCTAATGCTTCAATTCCTCCTTCACCTTCA
64 CAATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCA
* * * *
121316377 CCAAA-TACTTTGATGACTAGTGCGCTACCTCCTCCACCTT-CT-CCATCTCCACCACCC-CATC
129 -CAAACCACTTTGATGACTAGTGC-CCACCTCCTCCACCTTCCTACCATCTCCACCTCCCACATT
* *
121316438 AATATCTAGCACCCCA
192 GATGTCTAGCACCCCA
* * * *
121316454 CCTCCTCCTTCAACAACCACTTTGACGACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATC
1 CCTCCT-CTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
121316519 AATATCTAGCACCCCACCTCCTCC
65 AATATCTAGCACCCCACCTCCTCC
121316543 TTCAACAACC
Statistics
Matches: 399, Mismatches: 70, Indels: 64
0.75 0.13 0.12
Matches are distributed among these distances:
198 115 0.29
199 7 0.02
200 5 0.01
201 2 0.01
202 5 0.01
203 1 0.00
204 20 0.05
205 1 0.00
206 90 0.23
207 4 0.01
208 1 0.00
209 3 0.01
210 11 0.03
211 3 0.01
212 3 0.01
213 7 0.02
214 3 0.01
215 7 0.02
216 111 0.28
ACGTcount: A:0.21, C:0.46, G:0.07, T:0.27
Consensus pattern (207 bp):
CCTCCTCTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATCA
ATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCACA
AACCACTTTGATGACTAGTGCCCACCTCCTCCACCTTCCTACCATCTCCACCTCCCACATTGATG
TCTAGCACCCCA
Found at i:121316251 original size:42 final size:42
Alignment explanation
Indices: 121316205--121316336 Score: 155
Period size: 42 Copynumber: 3.2 Consensus size: 42
121316195 CTAGTGCCCT
*
121316205 ACCTCCTCCATCTCCACCACCCCCGTCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
* * * * * *
121316247 ACCTCCT-C-T-TTCACCAACCACTTCGATGA-CTAGTACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAAT-ATCTAGCACCCC
121316286 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
*
121316328 ACCTTCTCC
1 ACCTCCTCC
121316337 CCCATCTATG
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
39 29 0.40
40 3 0.04
41 3 0.04
42 37 0.51
ACGTcount: A:0.22, C:0.52, G:0.05, T:0.22
Consensus pattern (42 bp):
ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
Found at i:121316315 original size:81 final size:81
Alignment explanation
Indices: 121316175--121316331 Score: 260
Period size: 81 Copynumber: 1.9 Consensus size: 81
121316165 CTTGTTCTTC
* * * *
121316175 TTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATCTCCACCACCCCCGTCAATATCTA
1 TTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
121316240 GCACCCCACCTCCTCT
66 GCACCCCACCTCCTCT
**
121316256 TTCACCAACCACTTCGATGACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
1 TTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
121316321 GCACCCCACCT
66 GCACCCCACCT
121316332 TCTCCCCCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.24, C:0.48, G:0.06, T:0.22
Consensus pattern (81 bp):
TTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
GCACCCCACCTCCTCT
Found at i:121316493 original size:39 final size:39
Alignment explanation
Indices: 121316449--121316581 Score: 124
Period size: 39 Copynumber: 3.3 Consensus size: 39
121316439 ATATCTAGCA
*
121316449 CCCCACCTCCTCCTTCAACAACCACTTTGACGACTAGTG
1 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
* * * * ** * **
121316488 CCCCACCTTCTCCATCTCCACCACCCCCATCA-ATATCTAGCA
1 CCCCACCTCCTCC-T-TCAACAACCACTTTGACA-A-CTAGTG
121316530 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
1 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
*
121316569 CCCCACCTTCTCC
1 CCCCACCTCCTCC
121316582 ATCTCCACCA
Statistics
Matches: 69, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
39 28 0.41
40 12 0.17
41 13 0.19
42 16 0.23
ACGTcount: A:0.23, C:0.49, G:0.06, T:0.23
Consensus pattern (39 bp):
CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
Found at i:121316536 original size:81 final size:81
Alignment explanation
Indices: 121316410--121316622 Score: 378
Period size: 81 Copynumber: 2.7 Consensus size: 81
121316400 GCTACCTCCT
121316410 CCACCTTCTCCATCTCCACCA-CCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
*
121316474 TTTGACGACTAGTGCC
66 TTTGACAACTAGTGCC
121316490 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
121316555 TTTGACAACTAGTGCC
66 TTTGACAACTAGTGCC
*
121316571 CCACCTTCTCCATCTCCACCACCCCCATCAACT-TCTAACA-CCCACCTCCTCC
1 CCACCTTCTCCATCTCCACCACCCCCATCAA-TATCTAGCACCCCACCTCCTCC
121316623 CCATCGATGT
Statistics
Matches: 129, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
80 33 0.26
81 95 0.74
82 1 0.01
ACGTcount: A:0.23, C:0.50, G:0.04, T:0.22
Consensus pattern (81 bp):
CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
TTTGACAACTAGTGCC
Found at i:121316603 original size:39 final size:39
Alignment explanation
Indices: 121316481--121316603 Score: 115
Period size: 39 Copynumber: 3.1 Consensus size: 39
121316471 CACTTTGACG
121316481 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCAA
1 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATC-A
** * * * * **
121316521 TATCTAGCACCCCACCTCCTCC-T-TCAACAACCACTTTGACA
1 -A-CTAGTGCCCCACCTTCTCCATCTCCACCACCCCCAT--CA
121316562 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCA
1 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCA
121316601 ACT
1 ACT
121316604 TCTAACACCC
Statistics
Matches: 61, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
39 21 0.34
40 11 0.18
41 12 0.20
42 17 0.28
ACGTcount: A:0.24, C:0.50, G:0.05, T:0.22
Consensus pattern (39 bp):
ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCA
Found at i:121317207 original size:36 final size:33
Alignment explanation
Indices: 121317053--121317185 Score: 212
Period size: 33 Copynumber: 4.0 Consensus size: 33
121317043 GGAGTTGGAC
* * * * *
121317053 CACCACCGCCACCACTACCTCCAGGGGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
121317086 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
*
121317119 CACCACCTCCGCCACCACCTCCTGGTGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
121317152 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
121317185 C
1 C
121317186 TCCTGGCCCT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 93 1.00
ACGTcount: A:0.21, C:0.45, G:0.25, T:0.09
Consensus pattern (33 bp):
CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
Found at i:121321342 original size:16 final size:16
Alignment explanation
Indices: 121321307--121321340 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
121321297 TTGTTTTGCA
121321307 TTTTCTTTTTCTTTTC
1 TTTTCTTTTTCTTTTC
121321323 TTTTCTTTTT-TTTT-
1 TTTTCTTTTTCTTTTC
121321337 TTTT
1 TTTT
121321341 TTTGCCAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 4 0.22
16 10 0.56
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTCTTTTTCTTTTC
Found at i:121331852 original size:18 final size:18
Alignment explanation
Indices: 121331831--121331870 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
121331821 CTCCACTTGC
*
121331831 ACCAACACCAGGACCAGG
1 ACCAACACCAGGACCAAG
**
121331849 ACCAGGACCAGGACCAAG
1 ACCAACACCAGGACCAAG
121331867 ACCA
1 ACCA
121331871 GGAACAGCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.38, G:0.23, T:0.00
Consensus pattern (18 bp):
ACCAACACCAGGACCAAG
Found at i:121331885 original size:6 final size:6
Alignment explanation
Indices: 121331837--121331883 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
121331827 TTGCACCAAC
* * *
121331837 ACCAGG ACCAGG ACCAGG ACCAGG ACCAAG ACCAGG AACAGC ACCAG
1 ACCAGG ACCAGG ACCAGG ACCAGG ACCAGG ACCAGG ACCAGG ACCAG
121331884 CAACACCCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.38, C:0.34, G:0.28, T:0.00
Consensus pattern (6 bp):
ACCAGG
Found at i:121333189 original size:9 final size:10
Alignment explanation
Indices: 121333166--121333190 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
121333156 TAAATTCAAA
121333166 AAAAATACAT
1 AAAAATACAT
121333176 AAAAATACAT
1 AAAAATACAT
121333186 AAAAA
1 AAAAA
121333191 ATTCAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATACAT
Found at i:121337870 original size:3 final size:3
Alignment explanation
Indices: 121337862--121337893 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
121337852 CTTAAGTTGA
121337862 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
121337894 ACCTTCAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:121340929 original size:31 final size:31
Alignment explanation
Indices: 121340889--121340955 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
121340879 ATTTCTCGTT
*
121340889 TTATGGAACTAATTGTCATCAAAGTGAGTTA
1 TTATTGAACTAATTGTCATCAAAGTGAGTTA
121340920 TTATTGAACTAATTGTCATCAAAGTGAGTTA
1 TTATTGAACTAATTGTCATCAAAGTGAGTTA
121340951 TTATT
1 TTATT
121340956 ATTATTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.40
Consensus pattern (31 bp):
TTATTGAACTAATTGTCATCAAAGTGAGTTA
Found at i:121342483 original size:25 final size:23
Alignment explanation
Indices: 121342455--121342503 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
121342445 TAAATAAAAA
121342455 TATTTAAACAATAAAAATGAATATT
1 TATTTAAA-AAT-AAAATGAATATT
* *
121342480 TATTTAAATATAAAATTAATATT
1 TATTTAAAAATAAAATGAATATT
121342503 T
1 T
121342504 TATCCTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 12 0.55
24 2 0.09
25 8 0.36
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TATTTAAAAATAAAATGAATATT
Found at i:121347156 original size:231 final size:231
Alignment explanation
Indices: 121346753--121347219 Score: 891
Period size: 231 Copynumber: 2.0 Consensus size: 231
121346743 ATATCCATAG
121346753 AGCAATTATAGTACATTTGCCATATTAAACGGACACAATTAATCTACATCAAGATTAAAGGAAAT
1 AGCAATTATAGTACATTTGCCATATTAAACGGACACAATTAATCTACATCAAGATTAAAGGAAAT
121346818 GGCGGTACACAGATATAAAAGTAGTCAACTTATACTGCTATCCACTAAATGCAAGGACTACACAA
66 GGCGGTACACAGATATAAAAGTAGTCAACTTATACTGCTATCCACTAAATGCAAGGACTACACAA
*
121346883 CCAGCAGGTCCAGCACCGACGATAATACAAGAAAAAAGTCACAAGAAAGGAAAACGTAGTCATAA
131 CCAGCAGGTCCAGCACCGACGATAATACAAGAAAAAAGTCACAAGAAAAGAAAACGTAGTCATAA
*
121346948 AGAAAATCAGCTTCCTTTATGAAAGGAAAGAGGACT
196 AGAAAATCAGCTTCCTTTACGAAAGGAAAGAGGACT
121346984 AGCAATTATAGTACATTTGCCATATTAAACGGACACAATTAATCTACATCAAGATTAAAGGAAAT
1 AGCAATTATAGTACATTTGCCATATTAAACGGACACAATTAATCTACATCAAGATTAAAGGAAAT
121347049 GGCGGTACACAGATATAAAAGTAGTTC-ACTTATACTGCTATCCACTAAATGCAAGGACTACACA
66 GGCGGTACACAGATATAAAAGTAG-TCAACTTATACTGCTATCCACTAAATGCAAGGACTACACA
121347113 ACCAGCAGGTCCAGCACCGACGATAATACAAGAAAAAAGTCACAAGAAAAGAAAACGTAGTCATA
130 ACCAGCAGGTCCAGCACCGACGATAATACAAGAAAAAAGTCACAAGAAAAGAAAACGTAGTCATA
*
121347178 AAGAAAATCAGCTTCCTTTACGTAAGGAAAGAGGACT
195 AAGAAAATCAGCTTCCTTTACGAAAGGAAAGAGGACT
121347215 AGCAA
1 AGCAA
121347220 AAGTTATCAA
Statistics
Matches: 232, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
231 230 0.99
232 2 0.01
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (231 bp):
AGCAATTATAGTACATTTGCCATATTAAACGGACACAATTAATCTACATCAAGATTAAAGGAAAT
GGCGGTACACAGATATAAAAGTAGTCAACTTATACTGCTATCCACTAAATGCAAGGACTACACAA
CCAGCAGGTCCAGCACCGACGATAATACAAGAAAAAAGTCACAAGAAAAGAAAACGTAGTCATAA
AGAAAATCAGCTTCCTTTACGAAAGGAAAGAGGACT
Found at i:121349609 original size:9 final size:9
Alignment explanation
Indices: 121349595--121349619 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
121349585 ACTTGACTTA
121349595 AAAAATATT
1 AAAAATATT
121349604 AAAAATATT
1 AAAAATATT
121349613 AAAAATA
1 AAAAATA
121349620 AATTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AAAAATATT
Found at i:121349617 original size:20 final size:20
Alignment explanation
Indices: 121349592--121349635 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
121349582 TTTACTTGAC
*
121349592 TTAAAAA-ATATTA-AAAATA
1 TTAAAAATAAATTATAAAA-A
121349611 TTAAAAATAAATTATAAAAA
1 TTAAAAATAAATTATAAAAA
121349631 TTAAA
1 TTAAA
121349636 TTAAAGCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 11 0.50
21 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TTAAAAATAAATTATAAAAA
Found at i:121351387 original size:23 final size:23
Alignment explanation
Indices: 121351360--121351405 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
121351350 AGTTGCACAG
*
121351360 AATGTATAAAAATTGCAATTAAT
1 AATGTATAAAAATTACAATTAAT
121351383 AATGTATAAAAATTACAATTAAT
1 AATGTATAAAAATTACAATTAAT
121351406 TTCATCCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (23 bp):
AATGTATAAAAATTACAATTAAT
Found at i:121355057 original size:152 final size:152
Alignment explanation
Indices: 121354766--121355059 Score: 374
Period size: 152 Copynumber: 1.9 Consensus size: 152
121354756 AGACGGCACT
* * *
121354766 AGTAATAATTTTAGTATTATTTTAGTTAAAAATTTAACGAGTTAATTTAGTTGGTTAGATAGTTA
1 AGTAATAATTTTAATATTATTTTAGTTAAAAATTTAACAAGTTAATTTAGTTGGTTAAATAGTTA
* * * * * *
121354831 AATGTTAGAGTTTTTATCTCTAAGTCTCATGTTCGATTCCTCTTTTACTCATATTCGTCTTTTTT
66 AATGTTAAAGTTTTTATCTCTAAGTCTCAGGTTCAATTACTCTCTTACTCATATTCGTATTTTTT
121354896 GGTGCAGCCACTAGGCAACATC
131 GGTGCAGCCACTAGGCAACATC
* * * * * *
121354918 AGTAATATTTTTAATATTTTTTTAGTTGAAAATTTAATAAGTTAATTTATTTGGTTAAATGGTTA
1 AGTAATAATTTTAATATTATTTTAGTTAAAAATTTAACAAGTTAATTTAGTTGGTTAAATAGTTA
* * * * * *
121354983 AATGTTAAATTTTTTGTTTCTAAGTCTCAGGTTCAATTATTCTCTTATTCATATTTGTATTTCTT
66 AATGTTAAAGTTTTTATCTCTAAGTCTCAGGTTCAATTACTCTCTTACTCATATTCGTATTT-TT
*
121355048 T-GTGTAGCCACT
130 TGGTGCAGCCACT
121355060 GTGTTAGGCG
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
152 116 0.97
153 3 0.03
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.48
Consensus pattern (152 bp):
AGTAATAATTTTAATATTATTTTAGTTAAAAATTTAACAAGTTAATTTAGTTGGTTAAATAGTTA
AATGTTAAAGTTTTTATCTCTAAGTCTCAGGTTCAATTACTCTCTTACTCATATTCGTATTTTTT
GGTGCAGCCACTAGGCAACATC
Found at i:121357070 original size:19 final size:20
Alignment explanation
Indices: 121357033--121357071 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
121357023 AAATATTAAT
* *
121357033 TTTTTTATAATATATATTTA
1 TTTTTTACAATATAAATTTA
121357053 TTTTTTACAAT-TAAATTTA
1 TTTTTTACAATATAAATTTA
121357072 CAAAAAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTTACAATATAAATTTA
Found at i:121362318 original size:2 final size:2
Alignment explanation
Indices: 121362311--121362340 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
121362301 GTAAGTATGA
121362311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121362341 GCTTTATACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121364463 original size:2 final size:2
Alignment explanation
Indices: 121364456--121364496 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
121364446 ACAATAATAC
*
121364456 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121364497 ATAGAAATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:121364466 original size:12 final size:11
Alignment explanation
Indices: 121364449--121364499 Score: 68
Period size: 12 Copynumber: 4.5 Consensus size: 11
121364439 AAAGTAAACA
121364449 ATAATACTATAT
1 ATAATA-TATAT
121364461 ATAATATATAT
1 ATAATATATAT
121364472 AT-ATATATAT
1 ATAATATATAT
*
121364482 ATATATATGTAT
1 ATA-ATATATAT
121364494 ATAATA
1 ATAATA
121364500 GAAATACACA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 10 0.28
11 10 0.28
12 16 0.44
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (11 bp):
ATAATATATAT
Found at i:121364862 original size:3 final size:3
Alignment explanation
Indices: 121364849--121364934 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
121364839 GAGGGCATAT
**
121364849 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
121364896 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121364935 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:121364873 original size:12 final size:12
Alignment explanation
Indices: 121364849--121364931 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
121364839 GAGGGCATAT
121364849 ATAATAT-AATA
1 ATAATATAAATA
121364860 ATAATATAAATA
1 ATAATATAAATA
121364872 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
121364887 GGAATA-ATAATA
1 ATAATATA-AATA
121364899 ATAATATAAATA
1 ATAATATAAATA
* *
121364911 ATAGTAAAAATA
1 ATAATATAAATA
*
121364923 ATAAAATAA
1 ATAATATAA
121364932 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:121364922 original size:27 final size:27
Alignment explanation
Indices: 121364849--121364935 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
121364839 GAGGGCATAT
* *
121364849 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
121364875 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121364899 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121364926 A-AATAATAAA
1 ATAAT-ATAAA
121364936 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:121365264 original size:25 final size:26
Alignment explanation
Indices: 121365232--121365281 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
121365222 AAAAACTAGC
* *
121365232 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAAAAACCTT
121365257 CTTTCCAAAAAAACAAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAAACCT
121365282 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAAACCTT
Found at i:121365292 original size:21 final size:23
Alignment explanation
Indices: 121365266--121365313 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121365256 TCTTTCCAAA
121365266 AAAACAAA-AA-AAACCTCCTCC
1 AAAACAAAGAACAAACCTCCTCC
* *
121365287 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAAACCTCCTCC
121365310 AAAA
1 AAAA
121365314 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 2 0.09
23 13 0.57
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAACAAAGAACAAACCTCCTCC
Found at i:121365875 original size:44 final size:44
Alignment explanation
Indices: 121365827--121366640 Score: 706
Period size: 44 Copynumber: 18.5 Consensus size: 44
121365817 ATCTTCGATC
*
121365827 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
*
121365871 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
121365915 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * ** * * *
121365958 TGCTTCACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTT-GATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATAT-TTTCAACT
*
121366003 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
*
121366047 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
121366091 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * * * * * *
121366134 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
121366179 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
** * * *
121366223 TGTTCCCTATAAGCACAGGGATGCCATGT-TGAAATCTTCGA-T
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * * * * * * * *
121366265 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 -TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
121366311 TGTTCCCTAT-AGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
121366354 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-T
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTCAACT
* * * * * * * * * *
121366396 CTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATT
1 -TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
121366442 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
121366486 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * * * * * *
121366529 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
121366574 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
121366618 TGTTCCCTATAAGCACAGGGATG
1 TGTTCCCTATAAGCACAGGGATG
121366641 TCATGCTGAA
Statistics
Matches: 621, Mismatches: 119, Indels: 60
0.78 0.15 0.08
Matches are distributed among these distances:
42 10 0.02
43 78 0.13
44 474 0.76
45 50 0.08
46 9 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
Found at i:121366066 original size:176 final size:176
Alignment explanation
Indices: 121365772--121366700 Score: 1013
Period size: 176 Copynumber: 5.3 Consensus size: 176
121365762 GATATCCGCT
* * * *
121365772 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATTTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
121365837 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
121365902 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
131 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
* *
121365948 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
121366013 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
121366078 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
131 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
*
121366124 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
* **
121366189 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGT-T
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
** * * * * * * **
121366253 GAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCT
131 GATGTTTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCATG--CTGAA
* * * * * * * * * *
121366301 ATCTTCGATTTG-TTCCCTAT-AGCACAGGGATGCCAAATCTGCTGT-TTTCAACTTGTTCCCTA
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTT-GATTTGTTCCCTA
** * * * * * * * *
121366363 TAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCATAGGAATGTCAG
65 TAAGCACAGGGATGCCAAAT-CTGATGTTTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCAA
* * * * * **
121366425 ATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCT
127 ATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAA
* * * * * * * ** * *
121366476 GT-TTTCAACTTG-TTCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTTGATCTGCTTCAC
1 ATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CTGCTATCTTTGATTTG-TTCCC
* * * * * * * * *
121366537 TGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAA
63 TATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAA
* *
121366602 TCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTGAA
128 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
*
121366651 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
121366701 CGGTCTGCTC
Statistics
Matches: 635, Mismatches: 92, Indels: 51
0.82 0.12 0.07
Matches are distributed among these distances:
173 3 0.00
174 20 0.03
175 128 0.20
176 442 0.70
177 37 0.06
178 5 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (176 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
Found at i:121366205 original size:132 final size:132
Alignment explanation
Indices: 121365993--121366702 Score: 1244
Period size: 132 Copynumber: 5.4 Consensus size: 132
121365983 CAGTTCTGTT
* * * * * * * * * * *
121365993 ATCTTTGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
121366057 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
121366122 AA
131 AA
121366124 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
121366189 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGTTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
121366254 AA
131 AA
*
121366256 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
121366321 -AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
121366385 AA
131 AA
* *
121366387 ATCTTCGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
121366452 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
121366517 AA
131 AA
121366519 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
121366584 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
121366649 AA
131 AA
*
121366651 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
121366703 GTCTGCTCCT
Statistics
Matches: 557, Mismatches: 20, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
131 140 0.25
132 417 0.75
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:121366839 original size:68 final size:68
Alignment explanation
Indices: 121366755--121366953 Score: 287
Period size: 68 Copynumber: 2.9 Consensus size: 68
121366745 TCTTCTTCCA
* * * *
121366755 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCAGGAAGAAAAGAT
121366820 -TT
66 CTT
* * *
121366822 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCAGGAAGAAAAGA
121366887 TCCTT
65 T-CTT
*
121366892 -TGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCAGGAAGAAAAGA
121366954 AATTTGTAAT
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
67 6 0.05
68 111 0.93
70 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCAGGAAGAAAAGAT
CTT
Found at i:121367209 original size:132 final size:133
Alignment explanation
Indices: 121366971--121367882 Score: 675
Period size: 132 Copynumber: 7.0 Consensus size: 133
121366961 AATTTCCAGC
* * * * * * *
121366971 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTACTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
*
121367036 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
66 GGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
121367101 GCT
131 GCT
* *
121367104 -TGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
121367168 GGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCG
66 GGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
121367233 GCT
131 GCT
121367236 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * * * * **
121367300 GGATAAGATCTG-CAA--TTC-GATCTGTTACCCTACCGATTAGGGGTTTAAGACCTT-T-CGTC
66 GGTTAAGATCTGTAAATCTTCAGCT-TGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-
* *
121367359 TTCGAT
128 TTGGCT
* * ** * * *
121367365 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * *** *
121367428 GGGGTTTAAG-GCTTGTAAA--TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CA
63 GGGGGTTAAGATC-TGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAA
* *
121367489 TCTTCGAT
127 T-TTGGCT
* * ** * * * * *
121367497 CTGTTTCCCTACTGCTTA-GGGGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGG
* * ** * * *
121367558 GGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAAA
65 GGGTTAAGA-TCTGTAAATCTTCAGCT-TGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAAA
*
121367619 TCTTCAGC-
127 T-TT-GGCT
* * *** ** * *
121367627 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTAGG
* ** * * * * * *
121367690 GGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCTACTGCTTA-GGGGATAA-G-ATCTACAA
65 GGGTTAAGATCTGTA-AATCTTCAGCT-TGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTA-AA
*
121367749 TTCGG-T
127 TTTGGCT
* * * * *
121367755 CTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
121367819 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATT
65 GGGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATT
121367883 CACTGATTCT
Statistics
Matches: 628, Mismatches: 112, Indels: 79
0.77 0.14 0.10
Matches are distributed among these distances:
127 7 0.01
128 55 0.09
129 99 0.16
130 83 0.13
131 68 0.11
132 311 0.50
133 5 0.01
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (133 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
GCT
Found at i:121367588 original size:85 final size:89
Alignment explanation
Indices: 121367060--121367654 Score: 379
Period size: 89 Copynumber: 6.8 Consensus size: 89
121367050 AATCTTCAGC
* * * ** * *
121367060 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAA-TTTGGCTTGTTACCCTACTGTTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATC-TGTAAACTTCAGCCTGTTACCCTACTGCTTAGG
*
121367123 GGGTTAA-AGCCCATCATCTTCGAT
65 GGTTTAAGAGCCCATCATCTTCGAT
* * *
121367147 CTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAA-CTTCAGCCTGTTACCCTACTGCTTAGG
*** ** *
121367212 GGTTTAAG-GCTTGT-AAATTCG-G
65 GGTTTAAGAGCCCATCATCTTCGAT
* * * ** * * * *
121367234 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTC-GATCTGTTTCCCTACTGCTTA
1 C-TGTTTCCCTACTGCTTAGGGGGATAAGA-TCTGTAAACTTCAG-CCTGTTACCCTACTGCTTA
** * *
121367297 GGGGGATAAGA--TC-TGCA-ATTCGAT
63 GGGGTTTAAGAGCCCAT-CATCTTCGAT
* * * ** * * *** * *
121367321 CTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTC-GATCTGTTTCCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAACTTCAG-CCTGTTACCCTACTGCTTAGG
* * ** * *
121367385 GGGTTAAGA-TCTGTAAATCTTC-AGC
65 GGTTTAAGAGCCCAT-CATCTTCGA-T
* ** * *
121367410 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAA-TTCAGCTTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATC-TGTAAACTTCAGCCTGTTACCCTACTGCTTAGG
*
121367473 GGGTTAA-AGCCCATCATCTTCGAT
65 GGTTTAAGAGCCCATCATCTTCGAT
* * * * *
121367497 CTGTTTCCCTACTGCTTA-GGGGATAAGATCTG-CAA-TTCGGTCTGTTACCCTACCGATTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACTGCTTAGGG
* *
121367559 GTTTAAGA-CCCTTCGTCTTCGAT
66 GTTTAAGAGCCCATCATCTTCGAT
*
121367582 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAA-CTTCAGCCTGTTACCCTACTGCTTAGG
121367647 GGTTTAAG
65 GGTTTAAG
121367655 GCTTGTAAAT
Statistics
Matches: 408, Mismatches: 74, Indels: 50
0.77 0.14 0.09
Matches are distributed among these distances:
85 61 0.15
86 93 0.23
87 92 0.23
88 68 0.17
89 94 0.23
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (89 bp):
CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACTGCTTAGGG
GTTTAAGAGCCCATCATCTTCGAT
Found at i:121367627 original size:217 final size:217
Alignment explanation
Indices: 121367104--121367884 Score: 1429
Period size: 217 Copynumber: 3.6 Consensus size: 217
121367094 AAATTTGGCT
* * * * * *
121367104 TGTTACCCTACTGTTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
1 TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
121367168 GGTTAAGATCTGTAAATCTTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
121367233 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
130 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-
*
121367298 GGGGATAAGATCTGCAATTCGATC
194 GGGGATAAGATCTGCAATTCGGTC
*
121367322 TGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
121367387 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
121367452 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
121367517 GGATAAGATCTGCAATTCGGTC
196 GGATAAGATCTGCAATTCGGTC
121367539 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
121367604 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
121367669 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
*
121367734 GGATAAGATCTACAATTCGGTC
196 GGATAAGATCTGCAATTCGGTC
121367756 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
*
121367821 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATTCA
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
121367885 CTGATTCTAG
Statistics
Matches: 549, Mismatches: 13, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
217 366 0.67
218 182 0.33
219 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (217 bp):
TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
GGATAAGATCTGCAATTCGGTC
Found at i:121368040 original size:66 final size:66
Alignment explanation
Indices: 121367934--121368060 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
121367924 TCTATGCTTA
*
121367934 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
121367999 G
66 G
* *
121368000 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTAT
121368061 TATATGAATG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
G
Found at i:121373913 original size:3 final size:3
Alignment explanation
Indices: 121373900--121373985 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
121373890 GAGGGCATAT
**
121373900 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
121373947 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121373986 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:121373924 original size:12 final size:12
Alignment explanation
Indices: 121373900--121373982 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
121373890 GAGGGCATAT
121373900 ATAATAT-AATA
1 ATAATATAAATA
121373911 ATAATATAAATA
1 ATAATATAAATA
121373923 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
121373938 GGAATA-ATAATA
1 ATAATATA-AATA
121373950 ATAATATAAATA
1 ATAATATAAATA
* *
121373962 ATAGTAAAAATA
1 ATAATATAAATA
*
121373974 ATAAAATAA
1 ATAATATAA
121373983 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:121373973 original size:27 final size:27
Alignment explanation
Indices: 121373900--121373986 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
121373890 GAGGGCATAT
* *
121373900 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
121373926 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121373950 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121373977 A-AATAATAAA
1 ATAAT-ATAAA
121373987 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:121374316 original size:25 final size:26
Alignment explanation
Indices: 121374284--121374333 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
121374274 AAAAACTAGC
* *
121374284 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAAAAACCTT
121374309 CTTTCCAAAAAAACAAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAAACCT
121374334 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAAACCTT
Found at i:121374344 original size:21 final size:23
Alignment explanation
Indices: 121374318--121374365 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121374308 TCTTTCCAAA
121374318 AAAACAAA-AA-AAACCTCCTCC
1 AAAACAAAGAACAAACCTCCTCC
* *
121374339 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAAACCTCCTCC
121374362 AAAA
1 AAAA
121374366 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 2 0.09
23 13 0.57
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAACAAAGAACAAACCTCCTCC
Found at i:121375117 original size:176 final size:176
Alignment explanation
Indices: 121374823--121375824 Score: 1069
Period size: 176 Copynumber: 5.7 Consensus size: 176
121374813 GATATCCGCT
* * *
121374823 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATTTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
121374888 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
66 AAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
121374953 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
131 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
* * * *
121374999 ATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
121375064 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
66 AAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
121375129 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
131 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
121375175 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
* * * * * * * **
121375240 AAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAGT
66 AAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCAAA
* * * * *
121375302 TCTGTTATCTTT-GATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGAT
128 TCTGATGT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAA
* * * * * * * * * * * *
121375352 GT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
1 ATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
** * * * * * * * *
121375415 TAAGCACAGGGATGCCATGT-TGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCAGA
65 TAAGCACAGGGATGCCAAATCTGATATTTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCAAA
* * * * * * **
121375478 TCTGCTATCTTCGATTTGTTCCCTATATGCACAGGGATGCCAAAT-CTGCT
128 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAA
* * * * * * * ** * *
121375528 GT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCATG-T-TGAAATCTTCGATCTGCTTCAC
1 ATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATTTG-TTCCC
* * * * * * * * *
121375589 TGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATATGCACAGGGATGCCAAA
63 TATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAA
*
121375654 TCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
128 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
* * *
121375703 ATCTTCGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATTTGTTTCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
* *
121375768 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
66 AAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATG
121375825 TCATGCTGAA
Statistics
Matches: 705, Mismatches: 100, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
174 4 0.01
175 27 0.04
176 635 0.90
177 35 0.05
178 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (176 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
Found at i:121375313 original size:264 final size:264
Alignment explanation
Indices: 121374878--121375783 Score: 1279
Period size: 264 Copynumber: 3.4 Consensus size: 264
121374868 ATCTTCGATC
** * * * *
121374878 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTTG-TTCCCTATAAGCACAG
1 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAG
* * * * * * * *
121374940 GGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTT
63 GAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTT
*
121375005 GATCTGCTTTACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTATAAGCAC
128 GATCTGCTTCACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTATAAGCAC
*
121375070 AGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTT
193 AGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTT
121375135 TTCAACT
258 TTCAACT
*
121375142 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
121375207 TGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGAT
66 TGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGAT
121375272 CTGCTTCACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTATAAGCACAGG
131 CTGCTTCACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTATAAGCACAGG
121375337 GATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTC
196 GATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTC
121375402 AACT
261 AACT
*
121375406 TGTTCCCTATAAGCACAGGGATGCCATGTTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
* *** *
121375471 TGTCAGATCTGCTATCTTCGATTTGTTCCCTATATGCACAGGGATGCCAAAT-CTGCTGT-TTTC
66 TGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTG
* * * * * ** * * * *
121375534 AACTTG-TTCCCTATAAGCACAGGGATGCCA-TGT-TGAAATCTTCGATCTGCTTCACTGTAAGC
129 ATC-TGCTTCACTGTAAGCACAGGAATGTCAGT-TCTGTTATCTTTGATTTG-TTCCCTATAAGC
* * * * * * * * *
121375596 ACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATATGCACAGGGATGCCAAATCTGCTG
191 ACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTG
121375661 TTTTCAACT
256 TTTTCAACT
*
121375670 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCATAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
*
121375735 TGTCAGATCTGCTATCTTCGATTTGTTTCCTATAAGCACAGGGATGCCA
66 TGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCA
121375784 AATCTGCTGT
Statistics
Matches: 586, Mismatches: 48, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
262 3 0.01
263 22 0.04
264 553 0.94
265 6 0.01
266 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (264 bp):
TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
TGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGAT
CTGCTTCACTGTAAGCACAGGAATGTCAGTTCTGTTATCTTTGATTTGTTCCCTATAAGCACAGG
GATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTC
AACT
Found at i:121375419 original size:132 final size:132
Alignment explanation
Indices: 121375097--121375886 Score: 1187
Period size: 132 Copynumber: 6.0 Consensus size: 132
121375087 TGTTTTCAAC
*
121375097 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
* *
121375162 ATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
66 ATGCCATTCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
121375227 AT
131 AT
*** * * * *
121375229 TTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACA
1 TTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTGT-TTTCAACTTG-TTCCCTATAAGCACA
* * ** * * * * * * * * * *
121375291 GGAATGTCAGTTCTGTTATCTTTGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTT
63 GGGATGCCA-TTCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATC
* *
121375355 TTCAAC
127 TTCGAT
121375361 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
121375426 ATGCCATGT-TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
66 ATGCCAT-TCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
121375490 GAT
130 GAT
*
121375493 TTGTTCCCTATATGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
121375558 ATGCCATGT-TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
66 ATGCCAT-TCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
121375622 GAT
130 GAT
*
121375625 TTGTTCCCTATATGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
* *
121375690 ATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCG
66 ATGCCATTCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
121375755 AT
131 AT
*
121375757 TTGTTTCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
* *
121375822 ATGTCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
66 ATGCCATTCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
121375887 GTCTGCTCCT
Statistics
Matches: 596, Mismatches: 52, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
130 2 0.00
131 20 0.03
132 551 0.92
133 21 0.04
134 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (132 bp):
TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGG
ATGCCATTCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
AT
Found at i:121376023 original size:68 final size:69
Alignment explanation
Indices: 121375939--121376126 Score: 283
Period size: 68 Copynumber: 2.8 Consensus size: 69
121375929 TCTTCTTCCA
* * *
121375939 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCT-GGAAGAAGAGG
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCTAGGAAGAAAAGA
*
121376003 T-TT
66 TCCT
* * *
121376006 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTT-TAGGAAGAAAAG
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCTAGGAAGAAAAG
121376070 ATCCT
65 ATCCT
121376075 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTC
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTC
121376127 AGGGAAAAAG
Statistics
Matches: 108, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
67 1 0.01
68 106 0.98
69 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (69 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAATGCCATTTCTAGGAAGAAAAGA
TCCT
Found at i:121376264 original size:44 final size:43
Alignment explanation
Indices: 121376155--121377050 Score: 430
Period size: 44 Copynumber: 20.6 Consensus size: 43
121376145 AATTTCCAGC
* * ** *
121376155 CTGTTACCCTACTACTTAGGGGTTTAG-GC-CCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGAGCTGTA-AATCTTCG-T
* * * * * *
121376198 CTATTTCCCAACTACTTAAGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTAAGAGCTGTAAATCTTC-GT
*
121376243 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-TT-GG
1 CTGTTACCCTACTGCTTA-GGGGTTAAGAGC-TGTAAATCTTCGT
* ** *
121376285 CTTGTTACCCTACTGTTTAGGGGGTTAA-AGC-CCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTA-AATCTTCG-T
* * * *
121376330 CTGTTTCCCTACTGCTTCGAGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTAG-GGGTTAAGAGCTGTAAATCTTC-GT
* * *
121376375 CTGTTACCCTACTACTTAAGGGTTTAAG-GCTTGTAAA--TTCGG
1 CTGTTACCCTACTGCTT-AGGGGTTAAGAGC-TGTAAATCTTCGT
** *
121376417 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTA-AATCTTCG-T
* * * *
121376462 CTGTTTCCCTACTGCTTAGGGGATAAGATCTG-CAA--TTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGAGCTGTAAATCTTCG-T
* * * ***
121376503 CTGTTACCCTACCGATTAGGGGTTTAAGACCT-TTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGAGCTGTAAATCTTCG-T
* * *
121376547 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTAAATCTTC-GT
*
121376592 CTGTTACCCTACTGCTTAAGGGTTTAAG-GCTTGTAAA--TTCAG-
1 CTGTTACCCTACTGCTT-AGGGGTTAAGAGC-TGTAAATCTTC-GT
** *
121376634 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTA-AATCTTCG-T
* * * *
121376679 CTGTTTCCCTACTGCTTAGGGGATAAGATCTG-CAA--TTCGGT
1 CTGTTACCCTACTGCTTAGGGGTTAAGAGCTGTAAATCTTC-GT
* * * **
121376720 CTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-GCTGTAAATCTTCG-T
* * *
121376764 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTAAATCTTC-GT
*
121376809 CTGTTACCCTACTACTTAGGGGTTTAAG-GCTTGTAAA--TTCAG-
1 CTGTTACCCTACTGCTTAGGGG-TTAAGAGC-TGTAAATCTTC-GT
** *
121376851 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTA-AATCTTCG-T
* * *
121376896 CTGTTTCCCTACTGCTTAGGGGGATAAGA--TCTACAA--TTCGGT
1 CTGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTA-AATCTTC-GT
* * * **
121376938 CTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-GCTGTAAATCTTCG-T
* * *
121376982 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGAGCTGTAAATCTTC-GT
121377027 CTGTTACCCTACTGCTTAGGGGTT
1 CTGTTACCCTACTGCTTAGGGGTT
121377051 TAAGGCTTGT
Statistics
Matches: 657, Mismatches: 115, Indels: 161
0.70 0.12 0.17
Matches are distributed among these distances:
41 56 0.09
42 50 0.08
43 155 0.24
44 207 0.32
45 180 0.27
46 9 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGAGCTGTAAATCTTCGT
Found at i:121376378 original size:132 final size:133
Alignment explanation
Indices: 121376155--121377065 Score: 609
Period size: 132 Copynumber: 7.0 Consensus size: 133
121376145 AATTTCCAGC
* * * * * *
121376155 CTGTTACCCTACTACTTA-GGGGTTTAGGCCCATCATCTTCGATCTATTTCCCAACTACTTA-AG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGA-
121376218 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTT
65 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTT
121376283 GGCT
130 GGCT
* *
121376287 -TGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTCGAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
* * * *
121376351 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCG
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
121376416 GCT
131 GCT
121376419 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
* * * * * * * **
121376482 GGATAAGATCTG-CAA--TTC-GATCTGTTACCCTACCGATTAGGGGTTTAAGACCTT-T-CGTC
66 GGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-
* *
121376541 TTCGAT
128 TTGGCT
* * ** * * *
121376547 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * *** *
121376610 -AGGGTTTAAG-GCTTGTAAA--TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-C
63 GAGGG-TTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAA
* *
121376670 ATCTTCGAT
126 AT-TTGGCT
* * ** * * * * *
121376679 CTGTTTCCCTACTGCTTA-GGGGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAG-
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGA
* ** * * *
121376739 GGGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAA
65 GGG-TTAAGA-TCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAA
*
121376800 ATCTTCAGC-
126 AT-TT-GGCT
* * * *** ** * * *
121376809 CTGTTACCCTACTACTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTAGA
* ** * * * * * *
121376872 GGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCTACTGCTTAGGGGGATAA-G-ATCTACAA
65 GGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTA-AA
*
121376932 TTCGG-T
127 TTTGGCT
* * * * * *
121376938 CTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGA
* *
121377002 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATT
65 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATT
121377066 CACTGATTCT
Statistics
Matches: 620, Mismatches: 115, Indels: 88
0.75 0.14 0.11
Matches are distributed among these distances:
127 2 0.00
128 72 0.12
129 79 0.13
130 84 0.14
131 87 0.14
132 288 0.46
133 8 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (133 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
GCT
Found at i:121376557 original size:217 final size:217
Alignment explanation
Indices: 121376287--121377067 Score: 1393
Period size: 217 Copynumber: 3.6 Consensus size: 217
121376277 AAATTTGGCT
* * * * * * *
121376287 TGTTACCCTACTGTTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTCGAG
1 TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
*
121376351 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCA
121376416 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
130 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
*
121376481 GGGATAAGATCTGCAATTCGATC
195 GGGATAAGATCTGCAATTCGGTC
*
121376504 TGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
*
121376569 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCTTGTAAATTCAG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCAG
121376634 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
121376699 GGATAAGATCTGCAATTCGGTC
196 GGATAAGATCTGCAATTCGGTC
121376721 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
*
121376786 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCTTGTAAATTCAG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCAG
121376851 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-G
*
121376916 GGGATAAGATCTACAATTCGGTC
195 GGGATAAGATCTGCAATTCGGTC
121376939 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
* * *
121377004 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATTCA
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCA
121377068 CTGATTCTAG
Statistics
Matches: 545, Mismatches: 17, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
217 394 0.72
218 151 0.28
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (217 bp):
TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGCTTGTAAATTCAG
CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
GGATAAGATCTGCAATTCGGTC
Found at i:121376859 original size:349 final size:347
Alignment explanation
Indices: 121376141--121376927 Score: 952
Period size: 349 Copynumber: 2.3 Consensus size: 347
121376131 AAAAAGAAAT
* * * * *
121376141 TTGTAATTTCCAGCCTGTTACCCTA-CTACTTAGGGGTTT-AGGCCCATCATCTTCGATCTATTT
1 TTGTAAATT-CAGCTTGTTACCCTACCGA-TTAGGGGTTTAAGACCCATCATCTTCGATCTGTTT
* * * *
121376204 CCCAACTACTTAAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
64 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAAGGGGTTA
** *
121376269 AGGCTTGTAAATTTGGCTTGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
129 AGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
* * *
121376334 TTCCCTACTGCTTCGAGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAAGGGTT
194 TTCCCTACTGCTTAGAGGGATAAGATCTGTAAA-CTTCAGCCTGTTACCCTACGACTTAAGGGTT
* * *
121376399 TAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCT
258 TAAGCCTTGT-AATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATAATCTTCGACCT
* *
121376464 GTTTCCCTACTGCTTAGGGGATAAGA
322 GTTACCCTACTACTTAGGGGATAAGA
* * ** *
121376490 TCTG-CAATTC-GATCTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTCGATCTGTTT
1 T-TGTAAATTCAGCT-TGTTACCCTACCGATTAGGGGTTTAAGACCCATCATCTTCGATCTGTTT
*
121376553 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAAGGGTTTA
64 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAAGGGGTTA
121376618 AGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
129 AGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
* * * *
121376683 TTCCCTACTGCTTAG-GGGATAAGATCTG-CAA-TTCGGTCTGTTACCCTACCGA-TTAGGGGTT
194 TTCCCTACTGCTTAGAGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTA-CGACTTAAGGGTT
* * * * **
121376744 TAAGACCCTTCGT-CTTC-GATCTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC
258 TAAG--CCTT-GTAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-AATCTTC
* *
121376806 -AGCCTGTTACCCTACTACTTAGGGGTTTAAGGC
317 GA-CCTGTTACCCTACTACTTAGGGG-ATAA-GA
* * *
121376839 TTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTC
1 TTGTAAATTCAGCTTGTTACCCTACCGATTAGGGGTTTAAGA-CCCATCATCTTCGATCTGTTTC
*
121376903 CCTACTGCTTAGGGGGATAAGATCT
65 CCTACTGCTTAGGGGGTTAAGATCT
121376928 ACAATTCGGT
Statistics
Matches: 374, Mismatches: 47, Indels: 34
0.82 0.10 0.07
Matches are distributed among these distances:
345 32 0.09
346 31 0.08
347 32 0.09
348 41 0.11
349 234 0.63
350 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (347 bp):
TTGTAAATTCAGCTTGTTACCCTACCGATTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCC
CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAAGGGGTTAAG
GCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTT
CCCTACTGCTTAGAGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACGACTTAAGGGTTTAA
GCCTTGTAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATAATCTTCGACCTGTTA
CCCTACTACTTAGGGGATAAGA
Found at i:121377224 original size:66 final size:66
Alignment explanation
Indices: 121377118--121377244 Score: 218
Period size: 66 Copynumber: 1.9 Consensus size: 66
121377108 TCTATGCTTA
*
121377118 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
121377183 G
66 G
* **
121377184 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTGGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTAT
121377245 TATATGAATG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
G
Found at i:121378963 original size:3 final size:3
Alignment explanation
Indices: 121378950--121379035 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
121378940 GAGGGCATAT
**
121378950 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
121378997 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121379036 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:121378974 original size:12 final size:12
Alignment explanation
Indices: 121378950--121379032 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
121378940 GAGGGCATAT
121378950 ATAATAT-AATA
1 ATAATATAAATA
121378961 ATAATATAAATA
1 ATAATATAAATA
121378973 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
121378988 GGAATA-ATAATA
1 ATAATATA-AATA
121379000 ATAATATAAATA
1 ATAATATAAATA
* *
121379012 ATAGTAAAAATA
1 ATAATATAAATA
*
121379024 ATAAAATAA
1 ATAATATAA
121379033 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:121379023 original size:27 final size:27
Alignment explanation
Indices: 121378950--121379036 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
121378940 GAGGGCATAT
* *
121378950 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
121378976 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121379000 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121379027 A-AATAATAAA
1 ATAAT-ATAAA
121379037 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:121379366 original size:25 final size:26
Alignment explanation
Indices: 121379334--121379383 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
121379324 AAAAACTAGC
* *
121379334 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAAAAACCTT
121379359 CTTTCCAAAAAAACAAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAAACCT
121379384 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAAACCTT
Found at i:121379394 original size:21 final size:23
Alignment explanation
Indices: 121379368--121379415 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121379358 TCTTTCCAAA
121379368 AAAACAAA-AA-AAACCTCCTCC
1 AAAACAAAGAACAAACCTCCTCC
* *
121379389 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAAACCTCCTCC
121379412 AAAA
1 AAAA
121379416 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 2 0.09
23 13 0.57
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAACAAAGAACAAACCTCCTCC
Found at i:121381313 original size:17 final size:18
Alignment explanation
Indices: 121381291--121381336 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
121381281 AATTATCACA
121381291 TATTTTATTTAAATA-TT
1 TATTTTATTTAAATATTT
121381308 TATTTTAATTTAAATATTT
1 TATTTT-ATTTAAATATTT
*
121381327 TATTATATTT
1 TATTTTATTT
121381337 CTGTAAGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 6 0.23
18 13 0.50
19 7 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTTTATTTAAATATTT
Found at i:121386446 original size:17 final size:18
Alignment explanation
Indices: 121386420--121386455 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
121386410 ATTTTTTGAA
*
121386420 TTTTATTTTTAAA-TATT
1 TTTTAATTTTAAATTATT
121386437 TTTTAATTTTAAATTATT
1 TTTTAATTTTAAATTATT
121386455 T
1 T
121386456 ATTGATGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTAATTTTAAATTATT
Found at i:121396059 original size:60 final size:60
Alignment explanation
Indices: 121395834--121396092 Score: 244
Period size: 60 Copynumber: 4.3 Consensus size: 60
121395824 CCTCGGGCTG
*
121395834 TACATTACAGTATAGCAGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGGCCA
1 TACATTACAGTAT---AGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGACCA
* * * * * * **
121395897 TACATTACAGTGTAGCATCGGGA-CTTT--CCA-TGACTCAACCA-GAGCAACCTCTTACCA
1 TACATTACAGTATAGCACCAGCACCTTTGGCTACT-CCTCAA-CAGGAGCAACCTCAGACCA
*
121395954 TACA-TACAGTATAGCGGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGGCCA
1 TACATTACAGTATA---GCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGACCA
* * * * **
121396016 TACATTACAGTGTAGCACCAGGACCTTCT-GCAACTCCTCAACAGGAGCAGCCTCTTACCA
1 TACATTACAGTATAGCACCAGCACCTT-TGGCTACTCCTCAACAGGAGCAACCTCAGACCA
121396076 TACATTACAGTATAGCA
1 TACATTACAGTATAGCA
121396093 GCACCGGGAC
Statistics
Matches: 158, Mismatches: 26, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
56 9 0.06
57 24 0.15
58 2 0.01
59 10 0.06
60 65 0.41
61 3 0.02
62 24 0.15
63 21 0.13
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (60 bp):
TACATTACAGTATAGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGACCA
Found at i:121402056 original size:63 final size:63
Alignment explanation
Indices: 121401879--121402178 Score: 310
Period size: 63 Copynumber: 4.9 Consensus size: 63
121401869 CAATCTCGGG
* * * * *
121401879 CCATACATTACAGTATAGCAG---CAGGACCTTCAGTGACTCATCAACAAGAGCAACCTCAGT
1 CCATACATTACAGTATAGCAGCACCAGGACCTTCCGCGACTCCTCAACAGGAGCAACCTCAGA
* * * * *
121401939 CCATACATTACAG---CGTAGCTCCAGGACCTTCCAC-AGCTCCTCAACCA-GAGCAACCTCTGA
1 CCATACATTACAGTATAGCAGCACCAGGACCTTCCGCGA-CTCCTCAA-CAGGAGCAACCTCAGA
* * * * *
121401999 CCATACATTACAGTATAGCAGCACCGGGACCTTCGGCAACTCCTCAACAGGAACAACCTCAGG
1 CCATACATTACAGTATAGCAGCACCAGGACCTTCCGCGACTCCTCAACAGGAGCAACCTCAGA
* * * * **
121402062 CCATGCATTACAGTGTAGCAGCATCAGGACCTTCCGCGACTCCTCAACAGGACCAACCTCTTA
1 CCATACATTACAGTATAGCAGCACCAGGACCTTCCGCGACTCCTCAACAGGAGCAACCTCAGA
* * *
121402125 CCATACATTACAGTATAACAGCACCGGGACCTTCCGCGACTGCTCAACAGGAGC
1 CCATACATTACAGTATAGCAGCACCAGGACCTTCCGCGACTCCTCAACAGGAGC
121402179 CAGCAATTCA
Statistics
Matches: 196, Mismatches: 34, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
57 3 0.02
59 1 0.01
60 54 0.28
61 2 0.01
62 2 0.01
63 133 0.68
64 1 0.01
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (63 bp):
CCATACATTACAGTATAGCAGCACCAGGACCTTCCGCGACTCCTCAACAGGAGCAACCTCAGA
Found at i:121402131 original size:126 final size:123
Alignment explanation
Indices: 121401879--121402176 Score: 372
Period size: 126 Copynumber: 2.4 Consensus size: 123
121401869 CAATCTCGGG
* * * * *
121401879 CCATACATTACAGTATAGCAGCA---GGACCTTCAGTGACTCATCAACAAGAGCAACCTCAGTCC
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGAACAACCTCAGGCC
* *
121401941 ATACATTACAGCGTAGCTCCAGGACCTTCCACAGCTCCTCAACCAGAGCAACCTCTGA
66 ATACATTACAGCGTAGCGCCAGGACCTTCCACAGCTCCTCAACCAGACCAACCTCTGA
* *
121401999 CCATACATTACAGTATAGCAGCACCGGGACCTTCGGCAACTCCTCAACAGGAACAACCTCAGGCC
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGAACAACCTCAGGCC
* * * *
121402064 ATGCATTACAGTGTAGCAGCATCAGGACCTTCCGC-GACTCCTCAA-CAGGACCAACCTCTTA
66 ATACATTACAGCGTAGC-GC--CAGGACCTTCCACAG-CTCCTCAACCA-GACCAACCTCTGA
* * *
121402125 CCATACATTACAGTATAACAGCACCGGGACCTTCCGCGACTGCTCAACAGGA
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGA
121402177 GCCAGCAATT
Statistics
Matches: 153, Mismatches: 17, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
120 23 0.15
123 47 0.31
124 1 0.01
125 3 0.02
126 79 0.52
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.18
Consensus pattern (123 bp):
CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGAACAACCTCAGGCC
ATACATTACAGCGTAGCGCCAGGACCTTCCACAGCTCCTCAACCAGACCAACCTCTGA
Found at i:121405281 original size:60 final size:56
Alignment explanation
Indices: 121405203--121405313 Score: 125
Period size: 56 Copynumber: 1.9 Consensus size: 56
121405193 CAATATGTGA
121405203 GAACAATTGCCAAGTTTAGGGAC-TAACTTGAACATAAAAAAAATTCAAACCCCAAAATGG
1 GAACAATTGCCAAGTTTA-GGACGTAA-TT---CATAAAAAAAATTCAAACCCCAAAATGG
** * * *
121405263 GAACAATTGTGAATTTTAGGACGTAATTTATAAAAAAAATTTAAACCCCAA
1 GAACAATTGCCAAGTTTAGGACGTAATTCATAAAAAAAATTCAAACCCCAA
121405314 TATAAAAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
56 21 0.47
59 6 0.13
60 18 0.40
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.24
Consensus pattern (56 bp):
GAACAATTGCCAAGTTTAGGACGTAATTCATAAAAAAAATTCAAACCCCAAAATGG
Found at i:121406867 original size:2 final size:2
Alignment explanation
Indices: 121406862--121406891 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
121406852 TATAACTTAC
121406862 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121406892 TTCAATCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121413944 original size:47 final size:47
Alignment explanation
Indices: 121413835--121413945 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
121413825 CCGGGATAAG
*
121413835 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
121413882 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
121413929 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
121413946 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:121415894 original size:2 final size:2
Alignment explanation
Indices: 121415887--121415925 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
121415877 AGTTATTCAA
121415887 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121415926 ATTGTATTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121419286 original size:2 final size:2
Alignment explanation
Indices: 121419274--121419308 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
121419264 AAATAGTATG
*
121419274 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121419309 ATAAGGAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:121425400 original size:14 final size:14
Alignment explanation
Indices: 121425381--121425429 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
121425371 CATCATTTGA
121425381 TTTTTACATAATTT
1 TTTTTACATAATTT
121425395 TTTTTAC-TAAATATT
1 TTTTTACAT-AAT-TT
121425410 TTTGTTACATAATTT
1 TTT-TTACATAATTT
121425425 TTTTT
1 TTTTT
121425430 CACCCACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.03
14 12 0.39
15 10 0.32
16 7 0.23
17 1 0.03
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (14 bp):
TTTTTACATAATTT
Found at i:121425410 original size:16 final size:16
Alignment explanation
Indices: 121425381--121425429 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
121425371 CATCATTTGA
121425381 TTTTTACAT-A-ATTT
1 TTTTTACATAATATTT
121425395 TTTTTAC-TAAATATTT
1 TTTTTACAT-AATATTT
*
121425411 TTGTTACATAAT-TTT
1 TTTTTACATAATATTT
121425426 TTTT
1 TTTT
121425430 CACCCACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 1 0.03
14 7 0.24
15 7 0.24
16 13 0.45
17 1 0.03
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTTTACATAATATTT
Found at i:121426066 original size:3 final size:3
Alignment explanation
Indices: 121426058--121426089 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
121426048 AGCAATTTAT
121426058 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
121426090 TTCATTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:121426703 original size:52 final size:54
Alignment explanation
Indices: 121426603--121426703 Score: 118
Period size: 52 Copynumber: 1.9 Consensus size: 54
121426593 TCAAGAAATT
* * * **
121426603 TTTTTAAGGAGATTGAAATTAAATTTTAATTTTTAAAGGTTTGTATCTTTATAA
1 TTTTTAAAGAGATTGAAATTAAATTTTAATCTTTAAAAGTTTAAATCTTTATAA
*
121426657 TTTTTAAAGA-ATT-AAATTAAATTTT-ATCTTTAAAATTTTAAAATCTT
1 TTTTTAAAGAGATTGAAATTAAATTTTAATCTTTAAAAGTTT-AAATCTT
121426704 AAAAAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
51 11 0.28
52 17 0.43
53 3 0.08
54 9 0.22
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (54 bp):
TTTTTAAAGAGATTGAAATTAAATTTTAATCTTTAAAAGTTTAAATCTTTATAA
Found at i:121436335 original size:8 final size:8
Alignment explanation
Indices: 121436309--121436349 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
121436299 TATTTTATAT
121436309 TAATTAAA
1 TAATTAAA
*
121436317 TAAAATAAA
1 T-AATTAAA
121436326 TAATTAAA
1 TAATTAAA
121436334 TAATTAAA
1 TAATTAAA
*
121436342 TAAATAAA
1 TAATTAAA
121436350 AGAAAGACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (8 bp):
TAATTAAA
Found at i:121436336 original size:12 final size:12
Alignment explanation
Indices: 121436309--121436348 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
121436299 TATTTTATAT
121436309 TAATTAAATAAAA
1 TAATTAAAT-AAA
* *
121436322 TAAATAATTAAA
1 TAATTAAATAAA
121436334 TAATTAAATAAA
1 TAATTAAATAAA
121436346 TAA
1 TAA
121436349 AAGAAAGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAATTAAATAAA
Found at i:121437851 original size:18 final size:18
Alignment explanation
Indices: 121437814--121437917 Score: 95
Period size: 18 Copynumber: 5.8 Consensus size: 18
121437804 TAAATAAAGG
*
121437814 TACTGAA-AATTGATTGT
1 TACTGAATAATTGACTGT
*
121437831 TACTGAATAATCGACTGT
1 TACTGAATAATTGACTGT
121437849 TACTGAATCAA-TGACTGT
1 TACTGAAT-AATTGACTGT
* **
121437867 CACTGAATAATTGACTAC
1 TACTGAATAATTGACTGT
* * *
121437885 TATTGAATAATTGCCTGA
1 TACTGAATAATTGACTGT
* *
121437903 TATTGAATAAATGAC
1 TACTGAATAATTGAC
121437918 CATTATTGAA
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
17 9 0.13
18 60 0.85
19 2 0.03
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (18 bp):
TACTGAATAATTGACTGT
Found at i:121437940 original size:18 final size:18
Alignment explanation
Indices: 121437919--121437962 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
121437909 ATAAATGACC
*
121437919 ATTATTGAATAACTGATT
1 ATTACTGAATAACTGATT
*
121437937 ATTACTG-ATGACTGATT
1 ATTACTGAATAACTGATT
121437954 ATTACTGAA
1 ATTACTGAA
121437963 CAATAAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (18 bp):
ATTACTGAATAACTGATT
Found at i:121438965 original size:15 final size:16
Alignment explanation
Indices: 121438929--121438958 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
121438919 ACATATCATT
121438929 TATTTCATTATATCAA
1 TATTTCATTATATCAA
121438945 TATTTCA-TATATCA
1 TATTTCATTATATCA
121438959 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:121439556 original size:24 final size:24
Alignment explanation
Indices: 121439524--121439572 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
121439514 TCTATAAGAA
*
121439524 ACTAGACTCAATAATATTTAATTC
1 ACTAGACTCAATAAGATTTAATTC
121439548 ACTAGACTCAATAAGATTTAATTC
1 ACTAGACTCAATAAGATTTAATTC
121439572 A
1 A
121439573 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (24 bp):
ACTAGACTCAATAAGATTTAATTC
Found at i:121441806 original size:17 final size:17
Alignment explanation
Indices: 121441784--121441822 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
121441774 TATAATTAAT
121441784 TTTAAAATTTTAATATA
1 TTTAAAATTTTAATATA
121441801 TTTAAAATTTTAATATA
1 TTTAAAATTTTAATATA
*
121441818 CTTAA
1 TTTAA
121441823 TATATATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTAAAATTTTAATATA
Found at i:121442305 original size:79 final size:79
Alignment explanation
Indices: 121442126--121442299 Score: 190
Period size: 79 Copynumber: 2.2 Consensus size: 79
121442116 TGTGTTTACC
* * * *
121442126 TATTAAAAATATATTAAAATTTTAAATTTGGCTATACTTAAATTTTTTTTAATATGTTCAAAATT
1 TATTAAAAATATA-TAAAATTTTAAAATTGGCTATACTCAAATTTTCTTTAACATGTTCAAAATT
*
121442191 TAATATAGTTAAATA
65 TAACATAGTTAAATA
** * * * *
121442206 TATTAAGTATAT-TGAAATTTTAAAATTGGTTATACTCAACATTTTCTTTAACGTGTTTAAAATT
1 TATTAAAAATATATAAAATTTTAAAATTGGCTATACTCAA-ATTTTCTTTAACATGTTCAAAA-T
*
121442270 TTAACATATTTAAA-A
64 TTAACATAGTTAAATA
*
121442285 TTTTAAAAATATATA
1 TATTAAAAATATATA
121442300 TATTTTTTCT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
78 23 0.31
79 28 0.37
80 24 0.32
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.47
Consensus pattern (79 bp):
TATTAAAAATATATAAAATTTTAAAATTGGCTATACTCAAATTTTCTTTAACATGTTCAAAATTT
AACATAGTTAAATA
Found at i:121442344 original size:20 final size:20
Alignment explanation
Indices: 121442319--121442384 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
121442309 TCTTTATCTA
121442319 TTAAAAAATATATTAAAATT
1 TTAAAAAATATATTAAAATT
* * *
121442339 TTAAAATATATTTTAAAAAT
1 TTAAAAAATATATTAAAATT
* ***
121442359 ATATTGAATATATTAAAAATT
1 TTAAAAAATATATT-AAAATT
121442380 TTAAA
1 TTAAA
121442385 TTAGTTATAC
Statistics
Matches: 32, Mismatches: 13, Indels: 1
0.70 0.28 0.02
Matches are distributed among these distances:
20 25 0.78
21 7 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TTAAAAAATATATTAAAATT
Found at i:121443344 original size:35 final size:35
Alignment explanation
Indices: 121443298--121443369 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
121443288 ATATTATTAT
121443298 GTAAATATAAATCTAAAAATTTAAAGGATGTTTTA
1 GTAAATATAAATCTAAAAATTTAAAGGATGTTTTA
121443333 GTAAATATAAATCTAAAAATTTAAAGGATGTTTTA
1 GTAAATATAAATCTAAAAATTTAAAGGATGTTTTA
121443368 GT
1 GT
121443370 TTATTTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (35 bp):
GTAAATATAAATCTAAAAATTTAAAGGATGTTTTA
Found at i:121443842 original size:21 final size:20
Alignment explanation
Indices: 121443794--121443842 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
121443784 CGATTTATTA
*
121443794 TTTAAT-AAAATTTAAACTT
1 TTTAATAAAAATTAAAACTT
121443813 TTCTAAATAAAAATTAAAACTAT
1 TT-T-AATAAAAATTAAAACT-T
121443836 TTTAATA
1 TTTAATA
121443843 TCGAATCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
20 1 0.04
21 7 0.28
22 12 0.48
23 3 0.12
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (20 bp):
TTTAATAAAAATTAAAACTT
Found at i:121445007 original size:154 final size:156
Alignment explanation
Indices: 121444803--121445096 Score: 368
Period size: 155 Copynumber: 1.9 Consensus size: 156
121444793 CTTTATTTTA
121444803 AAATTAACACAAATTTTTTAATCAATAATTGTAATTTAAATTATAATTATTCT-TAAATTCT-TA
1 AAATTAACACAAATTTTTTAATCAATAATTGTAATTTAAATTATAATTATT-TATAAATT-TGTA
* * * *
121444866 ATTATCA-GAAATTTATTAATTTATAGTTA-TTTTAAATGT-AATTTTAATAACATGATGAAAAA
64 ATTAGCATGAAATTTATTAAATTATAATTATTTTTAAATGTGAA-TTTAATAACATAAT-AAAAA
*
121444928 TAAATGTTATTTTTTATAGTTCAAAAGTTT
127 TAAATATTATTTTTTATAGTTCAAAAGTTT
* * * ** *
121444958 AAATTAGCACAAA-TTTTTAATTAATAATTGTAGTTTATGTT-TCAGTTATTTATAAATTTGTAA
1 AAATTAACACAAATTTTTTAATCAATAATTGTAATTTAAATTAT-AATTATTTATAAATTTGTAA
** *
121445021 TTAGCATGATTTTTATTAAATTATAATTATTTTTAAATGTGAATTTAATAATATAATAAAAATAA
65 TTAGCATGAAATTTATTAAATTATAATTATTTTTAAATGTGAATTTAATAACATAATAAAAATAA
121445086 ATATTATTTTT
130 ATATTATTTTT
121445097 GTTTGTTCAA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
153 3 0.03
154 44 0.37
155 48 0.40
156 22 0.18
157 2 0.02
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (156 bp):
AAATTAACACAAATTTTTTAATCAATAATTGTAATTTAAATTATAATTATTTATAAATTTGTAAT
TAGCATGAAATTTATTAAATTATAATTATTTTTAAATGTGAATTTAATAACATAATAAAAATAAA
TATTATTTTTTATAGTTCAAAAGTTT
Found at i:121449001 original size:16 final size:16
Alignment explanation
Indices: 121448969--121449017 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
121448959 TCTAAACTAA
*
121448969 AATTATTTTTTAT-TT
1 AATTATTTTTAATATT
121448984 AATTATTTTTAATATT
1 AATTATTTTTAATATT
*
121449000 AATTGA-TATTAATATT
1 AATT-ATTTTTAATATT
121449016 AA
1 AA
121449018 AAAAAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 12 0.40
16 17 0.57
17 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
AATTATTTTTAATATT
Found at i:121452129 original size:2 final size:2
Alignment explanation
Indices: 121452122--121452151 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
121452112 ATAGTTTACC
121452122 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121452152 ACACCAGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121452220 original size:2 final size:2
Alignment explanation
Indices: 121452213--121452238 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121452203 TAAACAAAAG
121452213 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
121452239 ACACCAGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121452243 original size:87 final size:87
Alignment explanation
Indices: 121452126--121452300 Score: 341
Period size: 87 Copynumber: 2.0 Consensus size: 87
121452116 TTTACCTATA
121452126 TATATATATATATATATATATATATAACACCAGTGAATTAGGTAAAGGTATGAAAAAAGATGGAT
1 TATATATATATATATATATATATATAACACCAGTGAATTAGGTAAAGGTATGAAAAAAGATGGAT
121452191 TCAAATCCTAGGTAAACAAAAG
66 TCAAATCCTAGGTAAACAAAAG
*
121452213 TATATATATATATATATATATATATAACACCAGTGAATTAGGTAAAGGTATGAAAATAGATGGAT
1 TATATATATATATATATATATATATAACACCAGTGAATTAGGTAAAGGTATGAAAAAAGATGGAT
121452278 TCAAATCCTAGGTAAACAAAAG
66 TCAAATCCTAGGTAAACAAAAG
121452300 T
1 T
121452301 CTACATAGCA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.30
Consensus pattern (87 bp):
TATATATATATATATATATATATATAACACCAGTGAATTAGGTAAAGGTATGAAAAAAGATGGAT
TCAAATCCTAGGTAAACAAAAG
Done.