Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 419 of 427
Found at i:121799158 original size:31 final size:31
Alignment explanation
Indices: 121799098--121799177 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 31
121799088 ACTTTATTAT
**
121799098 AATTATTTTTAAAT-TTTTATATACTTTTTA
1 AATTATTTTTAAATATTTTATATAAATTTTA
*
121799128 ATTTTATTTTTAAATATTTT-TATAAATTTTA
1 A-ATTATTTTTAAATATTTTATATAAATTTTA
121799159 AATTATTTATTAATATATT
1 AATTATTT-TTAA-ATATT
121799178 ATCCAAGATA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
30 7 0.17
31 26 0.62
32 9 0.21
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (31 bp):
AATTATTTTTAAATATTTTATATAAATTTTA
Found at i:121807151 original size:31 final size:31
Alignment explanation
Indices: 121807097--121807156 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
121807087 TAATGAAAAT
121807097 TTTAATTAAAATGACCAAATTACT-TTTTGA
1 TTTAATTAAAATGACCAAATTACTCTTTTGA
* * *
121807127 TTTAATATATAATGACTAATTTACTCTTTT
1 TTTAAT-TAAAATGACCAAATTACTCTTTT
121807157 TTTTTAGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 6 0.24
31 15 0.60
32 4 0.16
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (31 bp):
TTTAATTAAAATGACCAAATTACTCTTTTGA
Found at i:121818574 original size:16 final size:18
Alignment explanation
Indices: 121818535--121818576 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
121818525 TAAATTTATA
121818535 ATATTT-TATATTATGCT
1 ATATTTATATATTATGCT
*
121818552 ATTTTTATATATTATG-T
1 ATATTTATATATTATGCT
121818569 A-ATTTATA
1 ATATTTATA
121818577 ATAGATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (18 bp):
ATATTTATATATTATGCT
Found at i:121833132 original size:35 final size:36
Alignment explanation
Indices: 121833087--121833157 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
121833077 AGATAATTAA
121833087 TTATAATATTTTTAT-T-TTTATTAAAATTTAAAATT
1 TTATAATATTTTTATATATTTATTAAAA-TTAAAATT
* *
121833122 TTATACTATTTTTATATATTTTTTAAAATTAAAATT
1 TTATAATATTTTTATATATTTATTAAAATTAAAATT
121833158 AAATTGATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
35 14 0.44
36 9 0.28
37 9 0.28
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (36 bp):
TTATAATATTTTTATATATTTATTAAAATTAAAATT
Found at i:121835865 original size:19 final size:19
Alignment explanation
Indices: 121835838--121835877 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
121835828 ATTATTTCTT
121835838 ATCAATAATTTAATATTAA
1 ATCAATAATTTAATATTAA
* *
121835857 ATCAGTAATTTCATATTAA
1 ATCAATAATTTAATATTAA
121835876 AT
1 AT
121835878 TTTAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (19 bp):
ATCAATAATTTAATATTAA
Found at i:121835892 original size:19 final size:18
Alignment explanation
Indices: 121835870--121835908 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
121835860 AGTAATTTCA
121835870 TATTAAATTTTAATATTTT
1 TATTAAATTTTAAT-TTTT
*
121835889 TATTTAATTTTAATTTTT
1 TATTAAATTTTAATTTTT
121835907 TA
1 TA
121835909 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TATTAAATTTTAATTTTT
Found at i:121837025 original size:31 final size:31
Alignment explanation
Indices: 121836990--121837051 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
121836980 GAAATAGATA
**
121836990 CATGTGGCAAATTGAGTAATATTTT-AGCAAG
1 CATGTGGCAAAGGGAGTAAT-TTTTAAGCAAG
*
121837021 CATGTGGTAAAGGGAGTAATTTTTAAGCAAG
1 CATGTGGCAAAGGGAGTAATTTTTAAGCAAG
121837052 TGTAGTCAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (31 bp):
CATGTGGCAAAGGGAGTAATTTTTAAGCAAG
Found at i:121847298 original size:27 final size:24
Alignment explanation
Indices: 121847229--121847298 Score: 59
Period size: 27 Copynumber: 2.8 Consensus size: 24
121847219 AGGCGGTTCA
**
121847229 GGAGGTGGTGGTGGTTCTGCGGTT
1 GGAGGTGGTGGTGGTAGTGCGGTT
* * * *
121847253 GTAGGAGGAGGTGCTAGTGCTGGATAT
1 GGAGGTGGTGGTGGTAGTGC-GG-T-T
121847280 GGAGGTGGTGGTGGTAGTG
1 GGAGGTGGTGGTGGTAGTG
121847299 GAGAAGGTGG
Statistics
Matches: 33, Mismatches: 10, Indels: 3
0.72 0.22 0.07
Matches are distributed among these distances:
24 14 0.42
25 2 0.06
26 1 0.03
27 16 0.48
ACGTcount: A:0.13, C:0.06, G:0.53, T:0.29
Consensus pattern (24 bp):
GGAGGTGGTGGTGGTAGTGCGGTT
Found at i:121847300 original size:24 final size:21
Alignment explanation
Indices: 121847273--121847335 Score: 51
Period size: 21 Copynumber: 3.0 Consensus size: 21
121847263 GTGCTAGTGC
121847273 TGGATATGGAGGTGGTGGTGGT
1 TGGA-ATGGAGGTGGTGGTGGT
*
121847295 AGTGG-A-GAAGGTGGTGGT-GT
1 --TGGAATGGAGGTGGTGGTGGT
*
121847315 TGGAAATGGAGGTGCTGGTGG
1 TGG-AATGGAGGTGGTGGTGG
121847336 ACATGGAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.09
20 3 0.09
21 21 0.66
22 2 0.06
24 3 0.09
ACGTcount: A:0.17, C:0.02, G:0.54, T:0.27
Consensus pattern (21 bp):
TGGAATGGAGGTGGTGGTGGT
Found at i:121847328 original size:18 final size:18
Alignment explanation
Indices: 121847289--121847353 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
121847279 TGGAGGTGGT
* *
121847289 GGTGGTAGTGGAGAA-GGT
1 GGTGGTGGTGGA-AATGGA
*
121847307 GGTGGTGTTGGAAATGGA
1 GGTGGTGGTGGAAATGGA
* *
121847325 GGTGCTGGTGGACATGGA
1 GGTGGTGGTGGAAATGGA
*
121847343 GGTGGTAGTGG
1 GGTGGTGGTGG
121847354 TAGTGGTGGA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
17 2 0.05
18 36 0.95
ACGTcount: A:0.18, C:0.03, G:0.54, T:0.25
Consensus pattern (18 bp):
GGTGGTGGTGGAAATGGA
Found at i:121847354 original size:42 final size:42
Alignment explanation
Indices: 121847273--121847354 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 42
121847263 GTGCTAGTGC
* * * *
121847273 TGGATATGGAGGTGGTGGTGGTAGTGGAGAAGGTGGTGGTGT
1 TGGAAATGGAGGTGCTGGTGGTAATGGAGAAGGTAGTGGTGT
**
121847315 TGGAAATGGAGGTGCTGGTGG-ACATGGAGGTGGTAGTGGT
1 TGGAAATGGAGGTGCTGGTGGTA-ATGGAGAAGGTAGTGGT
121847355 AGTGGTGGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.03
42 32 0.97
ACGTcount: A:0.18, C:0.02, G:0.52, T:0.27
Consensus pattern (42 bp):
TGGAAATGGAGGTGCTGGTGGTAATGGAGAAGGTAGTGGTGT
Found at i:121847713 original size:9 final size:9
Alignment explanation
Indices: 121847699--121847740 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
121847689 GTGGTGGACA
121847699 TGGAGGTGG
1 TGGAGGTGG
121847708 TGGAGGTGG
1 TGGAGGTGG
*
121847717 TGGTA-GCGG
1 TGG-AGGTGG
*
121847726 TGGTGGTGG
1 TGGAGGTGG
121847735 TGGAGG
1 TGGAGG
121847741 CGGAGCTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
9 26 0.96
10 1 0.04
ACGTcount: A:0.10, C:0.02, G:0.64, T:0.24
Consensus pattern (9 bp):
TGGAGGTGG
Found at i:121847753 original size:294 final size:294
Alignment explanation
Indices: 121847453--121848058 Score: 1169
Period size: 294 Copynumber: 2.1 Consensus size: 294
121847443 CAGGTGGACA
*
121847453 TGGAGGAGGA-GGAGGTGGTGGTAATGGTGGTGGCGGAGGTAGTGCAGGTGGAGCTTCTGGGTAT
1 TGGAGGA-GATGGAAGTGGTGGTAATGGTGGTGGCGGAGGTAGTGCAGGTGGAGCTTCTGGGTAT
121847517 GGAAGTGGAGGTGGTGAAGGAGGTGGAGCTGGTAGTGGAGCTGGAAATGGAGGAGGTGGTGGAGG
65 GGAAGTGGAGGTGGTGAAGGAGGTGGAGCTGGTAGTGGAGCTGGAAATGGAGGAGGTGGTGGAGG
121847582 TGGAGGTAAGGGTGGTGGCGGAGGTGGCGGTAGTGCCGGTGGAGCTGGAGGATATGGAAGTGGAA
130 TGGAGGTAAGGGTGGTGGCGGAGGTGGCGGTAGTGCCGGTGGAGCTGGAGGATATGGAAGTGGAA
121847647 GCGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGGTGGTGGTGGACATGGAGGTGGTGGA
195 GCGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGGTGGTGGTGGACATGGAGGTGGTGGA
121847712 GGTGGTGGTAGCGGTGGTGGTGGTGGAGGCGGAGC
260 GGTGGTGGTAGCGGTGGTGGTGGTGGAGGCGGAGC
*
121847747 TGGAGGATATGGAAGTGGTGGTAATGGTGGTGGCGGAGGTAGTGCAGGTGGAGCTTCTGGGTATG
1 TGGAGGAGATGGAAGTGGTGGTAATGGTGGTGGCGGAGGTAGTGCAGGTGGAGCTTCTGGGTATG
121847812 GAAGTGGAGGTGGTGAAGGAGGTGGAGCTGGTAGTGGAGCTGGAAATGGAGGAGGTGGTGGAGGT
66 GAAGTGGAGGTGGTGAAGGAGGTGGAGCTGGTAGTGGAGCTGGAAATGGAGGAGGTGGTGGAGGT
121847877 GGAGGTAAGGGTGGTGGCGGAGGTGGCGGTAGTGCCGGTGGAGCTGGAGGATATGGAAGTGGAAG
131 GGAGGTAAGGGTGGTGGCGGAGGTGGCGGTAGTGCCGGTGGAGCTGGAGGATATGGAAGTGGAAG
121847942 CGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGGTGGTGGTGGACATGGAGGTGGTGGAG
196 CGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGGTGGTGGTGGACATGGAGGTGGTGGAG
121848007 GTGGTGGTAGCGGTGGTGGTGGTGGAGGCGGAGC
261 GTGGTGGTAGCGGTGGTGGTGGTGGAGGCGGAGC
*
121848041 TGGAGGATATGGAAGTGG
1 TGGAGGAGATGGAAGTGG
121848059 AAGTGGAAGT
Statistics
Matches: 309, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
293 1 0.00
294 308 1.00
ACGTcount: A:0.19, C:0.06, G:0.55, T:0.20
Consensus pattern (294 bp):
TGGAGGAGATGGAAGTGGTGGTAATGGTGGTGGCGGAGGTAGTGCAGGTGGAGCTTCTGGGTATG
GAAGTGGAGGTGGTGAAGGAGGTGGAGCTGGTAGTGGAGCTGGAAATGGAGGAGGTGGTGGAGGT
GGAGGTAAGGGTGGTGGCGGAGGTGGCGGTAGTGCCGGTGGAGCTGGAGGATATGGAAGTGGAAG
CGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGGTGGTGGTGGACATGGAGGTGGTGGAG
GTGGTGGTAGCGGTGGTGGTGGTGGAGGCGGAGC
Found at i:121847939 original size:120 final size:121
Alignment explanation
Indices: 121847757--121848181 Score: 356
Period size: 120 Copynumber: 3.5 Consensus size: 121
121847747 TGGAGGATAT
** * *** * *
121847757 GGAAGTGGTGGTAATGGTGGTGGCGGAGGTAGTGCAGGTGGAGCTTCTGGGTATGGAAGTGGAGG
1 GGAAGTGGTGGTAGCGGAGGTGGC---GGTAGTGCAGGTGGAGCTGGAGGATATGGAAGTGGAAG
* **
121847822 TGGTGAA-GGAGGTGGAGCTGGTAGTGGAGCTGGAAATGGAGGAGGTGG-TGGAGGTGGA
63 TGG-GAAGGGAAGTGGAGAAGGTAGTGGAGCTGGAAATGGAGGAGGTGGATGGAGGTGGA
* * *
121847880 GGTAAG-GGTGGTGGCGGAGGTGGCGGTAGTGCCGGTGGAGCTGGAGGATATGGAAGTGGAAG-C
1 GG-AAGTGGTGGTAGCGGAGGTGGCGGTAGTGCAGGTGGAGCTGGAGGATATGGAAGTGGAAGTG
* * * * *
121847943 GGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGGTGGTGGTGGACATGGAGGTGGT
65 GGAAG-GGAAGTGGAGAAGGTAGTGGAGCTGGAAATGGAGGAGGTGG--ATGGAGGTGGA
* * * *
121848003 GGAGGTGGTGGTAGCGGTGGTGGTGGT-G-G-AGGCGGAGCTGGAGGATATGGAAGTGGAAGT-G
1 GGAAGTGGTGGTAGCGGAGGTGGCGGTAGTGCAGGTGGAGCTGGAGGATATGGAAGTGGAAGTGG
* * * * *
121848064 GAAGTGGAAGTGGTGAAGGTGGTGGAGCTGGTAA--G-GGTGGTGGACATGGAGGTGGT
66 GAAG-GGAAGTGGAGAAGGTAGTGGAGCTGGAAATGGAGGAGGTGG--ATGGAGGTGGA
* * * * *
121848120 GGAGGTGGTGGTAGTGGTGGTGGTGGT-G-G-AGGTGGAGCTGGAGGATATGGAGGTGGAAGTGG
1 GGAAGTGGTGGTAGCGGAGGTGGCGGTAGTGCAGGTGGAGCTGGAGGATATGGAAGTGGAAGTGG
121848182 AGGAGGAAGT
Statistics
Matches: 264, Mismatches: 29, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
117 78 0.30
118 5 0.02
119 1 0.00
120 128 0.48
121 1 0.00
122 3 0.01
123 45 0.17
124 3 0.01
ACGTcount: A:0.20, C:0.05, G:0.55, T:0.21
Consensus pattern (121 bp):
GGAAGTGGTGGTAGCGGAGGTGGCGGTAGTGCAGGTGGAGCTGGAGGATATGGAAGTGGAAGTGG
GAAGGGAAGTGGAGAAGGTAGTGGAGCTGGAAATGGAGGAGGTGGATGGAGGTGGA
Found at i:121848007 original size:9 final size:9
Alignment explanation
Indices: 121847993--121848034 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
121847983 GTGGTGGACA
121847993 TGGAGGTGG
1 TGGAGGTGG
121848002 TGGAGGTGG
1 TGGAGGTGG
*
121848011 TGGTA-GCGG
1 TGG-AGGTGG
*
121848020 TGGTGGTGG
1 TGGAGGTGG
121848029 TGGAGG
1 TGGAGG
121848035 CGGAGCTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
9 26 0.96
10 1 0.04
ACGTcount: A:0.10, C:0.02, G:0.64, T:0.24
Consensus pattern (9 bp):
TGGAGGTGG
Found at i:121848059 original size:6 final size:6
Alignment explanation
Indices: 121848050--121848076 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
121848040 CTGGAGGATA
121848050 TGGAAG TGGAAG TGGAAG TGGAAG TGG
1 TGGAAG TGGAAG TGGAAG TGGAAG TGG
121848077 TGAAGGTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.52, T:0.19
Consensus pattern (6 bp):
TGGAAG
Found at i:121848120 original size:3 final size:3
Alignment explanation
Indices: 121848114--121848154 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
121848104 TGGACATGGA
* * *
121848114 GGT GGT GGA GGT GGT GGT AGT GGT GGT GGT GGT GGA GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
121848155 AGCTGGAGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.07, C:0.00, G:0.66, T:0.27
Consensus pattern (3 bp):
GGT
Found at i:121848122 original size:9 final size:9
Alignment explanation
Indices: 121848110--121848154 Score: 65
Period size: 9 Copynumber: 5.0 Consensus size: 9
121848100 GTGGTGGACA
121848110 TGGAGGTGG
1 TGGAGGTGG
121848119 TGGAGGTGG
1 TGGAGGTGG
121848128 TGGTA-GTGG
1 TGG-AGGTGG
*
121848137 TGGTGGTGG
1 TGGAGGTGG
121848146 TGGAGGTGG
1 TGGAGGTGG
121848155 AGCTGGAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 31 0.97
10 1 0.03
ACGTcount: A:0.09, C:0.00, G:0.64, T:0.27
Consensus pattern (9 bp):
TGGAGGTGG
Found at i:121848154 original size:18 final size:18
Alignment explanation
Indices: 121847978--121848154 Score: 70
Period size: 18 Copynumber: 9.2 Consensus size: 18
121847968 GAGCTGGTAA
121847978 TGGTGGTGGTGGACATGGAGG
1 TGGTGGTGGTGG---TGGAGG
*
121847999 TGGTGGAGGTGGTGGTA-G
1 TGGTGGTGGTGGTGG-AGG
*
121848017 CGGTGGTGGTGGTGGAGG
1 TGGTGGTGGTGGTGGAGG
* * * * *
121848035 CGGAGCTGGAGGATATGGAAG
1 TGGTGGTGGTGG---TGGAGG
** ** *
121848056 TGGAAGTGGAAGTGGAAG
1 TGGTGGTGGTGGTGGAGG
** *
121848074 TGGTGAAGGTGGTGGAGC
1 TGGTGGTGGTGGTGGAGG
121848092 TGGTAAGGGTGGTGGACATGGAGG
1 TGGT---GGTGGTGG---TGGAGG
*
121848116 TGGTGGAGGTGGTGGTA-G
1 TGGTGGTGGTGGTGG-AGG
121848134 TGGTGGTGGTGGTGGAGG
1 TGGTGGTGGTGGTGGAGG
121848152 TGG
1 TGG
121848155 AGCTGGAGGA
Statistics
Matches: 119, Mismatches: 24, Indels: 29
0.69 0.14 0.17
Matches are distributed among these distances:
17 2 0.02
18 69 0.58
19 2 0.02
21 37 0.31
24 9 0.08
ACGTcount: A:0.16, C:0.03, G:0.58, T:0.23
Consensus pattern (18 bp):
TGGTGGTGGTGGTGGAGG
Found at i:121848171 original size:21 final size:21
Alignment explanation
Indices: 121848146--121848185 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
121848136 GTGGTGGTGG
121848146 TGGAGGTGG-AGCTGGAGGATA
1 TGGAGGTGGAAG-TGGAGGATA
121848167 TGGAGGTGGAAGTGGAGGA
1 TGGAGGTGGAAGTGGAGGA
121848186 GGAAGTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.25, C:0.03, G:0.55, T:0.17
Consensus pattern (21 bp):
TGGAGGTGGAAGTGGAGGATA
Found at i:121848220 original size:117 final size:117
Alignment explanation
Indices: 121847916--121848265 Score: 429
Period size: 117 Copynumber: 3.0 Consensus size: 117
121847906 TAGTGCCGGT
* * ** * *
121847916 GGAGCTGGAGGATATGGAAGTGGAAGCGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAATGG
1 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGAGGAAGTGGTCAAGGTGATGGAGCTGGCAA---
121847981 TGGTGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTGGAGGC
63 TGGTGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTGGAGGC
* * * * *
121848036 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGTGGAAGTGGTGAAGGTGGTGGAGCTGGTAAGGG
1 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGAGGAAGTGGTCAAGGTGATGGAGCTGGCAATGG
* *
121848101 TGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGTGGTGGTGGTGGTGGAGGT
66 TGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTGGAGGC
* * ** **
121848153 GGAGCTGGAGGATATGGAGGTGGAAGTGGAGGAGGAAGTGGCTCTGGGT-ATGGTTCTGGCAATG
1 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGAGGAAGTGG-TCAAGGTGATGGAGCTGGCAATG
* * * *
121848217 GTGGT--TC-TGGAGGTGGTGGTGGTAGTGGTGGCGGTGGTGGTGGTGGAGG
65 GTGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTGGAGG
121848266 GGCACATGGA
Statistics
Matches: 208, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
114 38 0.18
115 1 0.00
117 105 0.50
118 4 0.02
120 60 0.29
ACGTcount: A:0.18, C:0.05, G:0.55, T:0.22
Consensus pattern (117 bp):
GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGAGGAAGTGGTCAAGGTGATGGAGCTGGCAATGG
TGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTGGAGGC
Found at i:121848234 original size:3 final size:3
Alignment explanation
Indices: 121848228--121848262 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
121848218 TGGTTCTGGA
* *
121848228 GGT GGT GGT GGT AGT GGT GGC GGT GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
121848263 AGGGGCACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.03, C:0.03, G:0.66, T:0.29
Consensus pattern (3 bp):
GGT
Found at i:121859182 original size:32 final size:32
Alignment explanation
Indices: 121859146--121859206 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
121859136 TTTTTAGAGG
*
121859146 TTGATTAATACAAATCATTAAAGAAATTAGAA
1 TTGATTAATACAAACCATTAAAGAAATTAGAA
* *
121859178 TTGATTAATACAAACCCTTGAAGAAATTA
1 TTGATTAATACAAACCATTAAAGAAATTA
121859207 TGATTTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (32 bp):
TTGATTAATACAAACCATTAAAGAAATTAGAA
Found at i:121865761 original size:30 final size:30
Alignment explanation
Indices: 121865721--121865786 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
121865711 GTTAATAGCT
*
121865721 TATA-AAAAATTAT-TCAAATAAAAATTTCA
1 TATATAAAAATTATATAAAATAAAAA-TTCA
*
121865750 TATATAAAAATTATATAAAATTAAAATTCA
1 TATATAAAAATTATATAAAATAAAAATTCA
121865780 TATATAA
1 TATATAA
121865787 CAGTACAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 4 0.12
30 20 0.61
31 9 0.27
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (30 bp):
TATATAAAAATTATATAAAATAAAAATTCA
Found at i:121867603 original size:18 final size:18
Alignment explanation
Indices: 121867576--121867623 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
121867566 TATCCTTATA
121867576 AAATTT-GTTTTTTTAAT
1 AAATTTAGTTTTTTTAAT
*
121867593 AAATTTAGTTTCTTTAAT
1 AAATTTAGTTTTTTTAAT
121867611 AAATTTTAGTTTT
1 AAA-TTTAGTTTT
121867624 AGTTTTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 6 0.22
18 13 0.48
19 8 0.30
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (18 bp):
AAATTTAGTTTTTTTAAT
Found at i:121871401 original size:33 final size:33
Alignment explanation
Indices: 121871355--121871420 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
121871345 TTGCTTTTTT
*
121871355 ATCTAGGCTAGGCTGTGTTGGTCCTTAATTGCA
1 ATCTAGGCAAGGCTGTGTTGGTCCTTAATTGCA
121871388 ATCTAGGCAAGGCTGTGTTGGTCCTTAATTGCA
1 ATCTAGGCAAGGCTGTGTTGGTCCTTAATTGCA
121871421 GCAATGAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (33 bp):
ATCTAGGCAAGGCTGTGTTGGTCCTTAATTGCA
Found at i:121874593 original size:12 final size:12
Alignment explanation
Indices: 121874576--121874600 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121874566 TTATTCTCTC
121874576 ATTAAAAGTACA
1 ATTAAAAGTACA
121874588 ATTAAAAGTACA
1 ATTAAAAGTACA
121874600 A
1 A
121874601 GGATTTCGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATTAAAAGTACA
Found at i:121882574 original size:29 final size:31
Alignment explanation
Indices: 121882511--121882578 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 31
121882501 ACAGTTGGAT
*
121882511 CTAAA-TTTTAAAATTTAAAAAATAGAGAGA
1 CTAAATTTTTAAAATATAAAAAATAGAGAGA
* *
121882541 TTAAATTTTTAAAA-AT-AAAAATATAGAGA
1 CTAAATTTTTAAAATATAAAAAATAGAGAGA
121882570 CTAAATTTT
1 CTAAATTTT
121882579 AAGTTTTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 20 0.61
30 5 0.15
31 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.35
Consensus pattern (31 bp):
CTAAATTTTTAAAATATAAAAAATAGAGAGA
Found at i:121885961 original size:21 final size:22
Alignment explanation
Indices: 121885915--121885970 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
121885905 ATCTCATTAG
121885915 ATAAATAAATATTTAATAATACAA
1 ATAAATAAAT-TTT-ATAATACAA
*
121885939 ATAAATAAATTTT-TAATATAA
1 ATAAATAAATTTTATAATACAA
*
121885960 ATAATTAAATT
1 ATAAATAAATT
121885971 ATTTTTTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 17 0.57
23 3 0.10
24 10 0.33
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAATAAATTTTATAATACAA
Found at i:121885984 original size:29 final size:30
Alignment explanation
Indices: 121885952--121886009 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
121885942 AATAAATTTT
*
121885952 TAATATAAATAATTAAATTATTT-TTTATC
1 TAATATAAAAAATTAAATTATTTATTTATC
* *
121885981 TAATGTAAAAAATTAATTTATTTATTTAT
1 TAATATAAAAAATTAAATTATTTATTTAT
121886010 TGAATAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
TAATATAAAAAATTAAATTATTTATTTATC
Found at i:121886511 original size:33 final size:33
Alignment explanation
Indices: 121886456--121886520 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
121886446 TCCTCTTATT
* * *
121886456 TAAGAGTTTGAGAAAAGTTATGAATAATTCTAA
1 TAAGAGTTAGAGAAAAGCTATGAATAAGTCTAA
*
121886489 TAAGAGTTAGAGAGAAGCTATGAATAAGTCTA
1 TAAGAGTTAGAGAAAAGCTATGAATAAGTCTA
121886521 GACGTTGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.45, C:0.05, G:0.22, T:0.29
Consensus pattern (33 bp):
TAAGAGTTAGAGAAAAGCTATGAATAAGTCTAA
Found at i:121887980 original size:2 final size:2
Alignment explanation
Indices: 121887973--121888010 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
121887963 ACATTTGTTA
121887973 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121888011 TCGAGGCTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121891932 original size:45 final size:44
Alignment explanation
Indices: 121891832--121891938 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
121891822 TGTCTTTGAC
** * * *
121891832 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATACCATATATAAT
*
121891876 ATGGACTTACATGGCTCAATCCTGTCTCCAA-ACCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATACCATA--TATAAT
121891921 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
121891939 TTTCGTTCTG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 5 0.09
44 27 0.49
45 23 0.42
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAATACCATATATAAT
Found at i:121893535 original size:194 final size:194
Alignment explanation
Indices: 121893206--121893592 Score: 756
Period size: 194 Copynumber: 2.0 Consensus size: 194
121893196 TCTCAATCTT
121893206 AAACACCGATTCCTCCCTAGTCTGCATAGTGAATCCACTAATCCATCTAGCACAATAATCTCGGA
1 AAACACCGATTCCTCCCTAGTCTGCATAGTGAATCCACTAATCCATCTAGCACAATAATCTCGGA
121893271 ACACCCCTCCAATCGAAGTAGAGCCATTAGGAACTAAAATTACACCATCATTGTTGAGTTTTATC
66 ACACCCCTCCAATCGAAGTAGAGCCATTAGGAACTAAAATTACACCATCATTGTTGAGTTTTATC
*
121893336 CACCCTTGTTCCGGTACCATCCAAGAAGCGCCTACCATTCTCTTAATTTTAATGGTGCTTCAAG
131 CACCCTTGTTCCGGTACCATCCAAGAAGCGCCTACCATTCTCTTAATTTTAATGGCGCTTCAAG
*
121893400 AAACACCGATTCCTCCCTAGTCTGCATAGTGAATCCACTAATCCATCTAGCACAATGATCTCGGA
1 AAACACCGATTCCTCCCTAGTCTGCATAGTGAATCCACTAATCCATCTAGCACAATAATCTCGGA
121893465 ACACCCCTCCAATCGAAGTAGAGCCATTAGGAACTAAAATTACACCATCATTGTTGAGTTTTATC
66 ACACCCCTCCAATCGAAGTAGAGCCATTAGGAACTAAAATTACACCATCATTGTTGAGTTTTATC
121893530 CACCCTTGTTCCGGTACCATCCAAGAAGCGCCTACCATTCTCTTAATTTTAATGGCGCTTCAA
131 CACCCTTGTTCCGGTACCATCCAAGAAGCGCCTACCATTCTCTTAATTTTAATGGCGCTTCAA
121893593 TTGTATTAAT
Statistics
Matches: 191, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
194 191 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (194 bp):
AAACACCGATTCCTCCCTAGTCTGCATAGTGAATCCACTAATCCATCTAGCACAATAATCTCGGA
ACACCCCTCCAATCGAAGTAGAGCCATTAGGAACTAAAATTACACCATCATTGTTGAGTTTTATC
CACCCTTGTTCCGGTACCATCCAAGAAGCGCCTACCATTCTCTTAATTTTAATGGCGCTTCAAG
Found at i:121895609 original size:17 final size:18
Alignment explanation
Indices: 121895573--121895618 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
121895563 TTGATTGTTT
*
121895573 AAATAAAATTAATATAAA
1 AAATAAAATAAATATAAA
*
121895591 AAATTAAATAAAT-TAAA
1 AAATAAAATAAATATAAA
121895608 AAATAATAATA
1 AAATAA-AATA
121895619 CTAACACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATAAAATAAATATAAA
Found at i:121900451 original size:23 final size:22
Alignment explanation
Indices: 121900407--121900514 Score: 64
Period size: 22 Copynumber: 4.9 Consensus size: 22
121900397 ATATAATAAA
* *
121900407 TATTAATAGTAAATATTTAAAAT
1 TATTAATA-TATATTTTTAAAAT
121900430 TATTAATATATATTTTTGAAAA-
1 TATTAATATATATTTTT-AAAAT
* * *
121900452 TATTTATTTTTATGTTTTTAAAAAT
1 TA-TTA-ATATATATTTTT-AAAAT
* *
121900477 TA-TATTATATATATTTAAAA-
1 TATTAATATATATTTTTAAAAT
*
121900497 TATT--TATTTATTTTTAAA
1 TATTAATATATATTTTTAAA
121900515 TATTGCTTTG
Statistics
Matches: 69, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
19 12 0.17
20 2 0.03
21 5 0.07
22 18 0.26
23 17 0.25
24 13 0.19
25 2 0.03
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.55
Consensus pattern (22 bp):
TATTAATATATATTTTTAAAAT
Found at i:121900475 original size:24 final size:23
Alignment explanation
Indices: 121900436--121900507 Score: 85
Period size: 22 Copynumber: 3.1 Consensus size: 23
121900426 AAATTATTAA
121900436 TATATATTTTTGAAAATATTTATT
1 TATATATTTTT-AAAATATTTATT
* *
121900460 TTTATGTTTTTAAAA-A-TTATAT
1 TATATATTTTTAAAATATTTAT-T
*
121900482 TATATATATTTAAAATATTTATT
1 TATATATTTTTAAAATATTTATT
121900505 TAT
1 TAT
121900508 TTTTAAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
21 4 0.10
22 14 0.35
23 9 0.22
24 13 0.32
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (23 bp):
TATATATTTTTAAAATATTTATT
Found at i:121900496 original size:22 final size:22
Alignment explanation
Indices: 121900419--121900518 Score: 77
Period size: 22 Copynumber: 4.6 Consensus size: 22
121900409 TTAATAGTAA
*
121900419 ATATTTAAAAT-TATTAATATAT
1 ATATTTAAAATAT-TTATTATAT
* *
121900441 ATTTTTGAAAATATTTATTTTTAT
1 ATATTT-AAAATATTTA-TTATAT
* *
121900465 GTTTTTAAAA-ATTATATTATAT
1 ATATTTAAAATATT-TATTATAT
121900487 ATATTTAAAATATTTATT-TAT
1 ATATTTAAAATATTTATTATAT
121900508 -T-TTT-AAATATT
1 ATATTTAAAATATT
121900519 GCTTTGAATT
Statistics
Matches: 66, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
18 7 0.11
19 3 0.05
20 1 0.02
21 3 0.05
22 25 0.38
23 17 0.26
24 10 0.15
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
ATATTTAAAATATTTATTATAT
Found at i:121910961 original size:30 final size:29
Alignment explanation
Indices: 121910921--121910984 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
121910911 AACTTATATC
*
121910921 TTTATAATTTTTAAAAGATTAAATTAAAAT
1 TTTATAA-TTTTAAAAGATTAAAATAAAAT
* * *
121910951 TTTATCATTTTAAAATATTAAAATATAAT
1 TTTATAATTTTAAAAGATTAAAATAAAAT
121910980 TTTAT
1 TTTAT
121910985 TATGTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 24 0.80
30 6 0.20
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
TTTATAATTTTAAAAGATTAAAATAAAAT
Found at i:121910970 original size:29 final size:29
Alignment explanation
Indices: 121910929--121910984 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
121910919 TCTTTATAAT
*
121910929 TTTTAAAAGATTAAATTAAAATTTTATCA
1 TTTTAAAAGATTAAAATAAAATTTTATCA
* *
121910958 TTTTAAAATATTAAAATATAATTTTAT
1 TTTTAAAAGATTAAAATAAAATTTTAT
121910985 TATGTATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
TTTTAAAAGATTAAAATAAAATTTTATCA
Found at i:121919729 original size:17 final size:17
Alignment explanation
Indices: 121919709--121919764 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
121919699 TTAGGTTCAA
121919709 TTTTGAATATTAAATTT
1 TTTTGAATATTAAATTT
*
121919726 TTTTTAA-ATTTAAATTT
1 TTTTGAATA-TTAAATTT
* *
121919743 ATTAT-AATGTTAAATTT
1 -TTTTGAATATTAAATTT
121919760 TTTTG
1 TTTTG
121919765 TTACTGTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
16 4 0.13
17 24 0.77
18 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTGAATATTAAATTT
Found at i:121920862 original size:5 final size:5
Alignment explanation
Indices: 121920852--121920887 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
121920842 AGCTAAATAA
121920852 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT T
121920888 GGTCCAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:121925202 original size:47 final size:47
Alignment explanation
Indices: 121925138--121925248 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
121925128 GACATTGAGT
*
121925138 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
121925185 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
121925232 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
121925249 CTTATCCTGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:121927555 original size:30 final size:30
Alignment explanation
Indices: 121927490--121927561 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
121927480 TTAGTAAGTC
* * *
121927490 AAAATGTATGGAAATTTATCTTTCGTCAAT
1 AAAATTTATGAAAATTTATCATTCGTCAAT
121927520 AAAATTTATGAAAATTTATCATTCGTCAAT
1 AAAATTTATGAAAATTTATCATTCGTCAAT
121927550 AAAATTT-TGAAA
1 AAAATTTATGAAA
121927562 TTATTTAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 5 0.13
30 34 0.87
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (30 bp):
AAAATTTATGAAAATTTATCATTCGTCAAT
Found at i:121928890 original size:10 final size:10
Alignment explanation
Indices: 121928875--121928908 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
121928865 ACGATAAATA
121928875 ATAATTAATT
1 ATAATTAATT
121928885 ATAATTAATT
1 ATAATTAATT
*
121928895 ATTATT-ATT
1 ATAATTAATT
121928904 ATAAT
1 ATAAT
121928909 AATAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
ATAATTAATT
Found at i:121931236 original size:31 final size:31
Alignment explanation
Indices: 121931186--121931248 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
121931176 CCTTAACAAC
121931186 TCAACGACTTAAATAAAAATTTTTAAATAGT
1 TCAACGACTTAAATAAAAATTTTTAAATAGT
* * *
121931217 TCAATGACTTTAATGAAAATTTTTAAATAGT
1 TCAACGACTTAAATAAAAATTTTTAAATAGT
121931248 T
1 T
121931249 TAGTGATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (31 bp):
TCAACGACTTAAATAAAAATTTTTAAATAGT
Found at i:121933053 original size:18 final size:18
Alignment explanation
Indices: 121933030--121933066 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
121933020 GCAAGAAAAG
121933030 GTTTTGAGGGCCATGAAA
1 GTTTTGAGGGCCATGAAA
121933048 GTTTTGAGGGCCATGAAA
1 GTTTTGAGGGCCATGAAA
121933066 G
1 G
121933067 CAAATTCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.35, T:0.27
Consensus pattern (18 bp):
GTTTTGAGGGCCATGAAA
Found at i:121934644 original size:33 final size:33
Alignment explanation
Indices: 121934606--121934677 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
121934596 AAATTATAAG
121934606 AAATATATATTCTACAATTTATCCTTAATTTTT
1 AAATATATATTCTACAATTTATCCTTAATTTTT
121934639 AAATATATATTCTACAATTTATCCTTAATTTTT
1 AAATATATATTCTACAATTTATCCTTAATTTTT
121934672 AAATAT
1 AAATAT
121934678 TTTATCTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (33 bp):
AAATATATATTCTACAATTTATCCTTAATTTTT
Found at i:121937073 original size:28 final size:29
Alignment explanation
Indices: 121937028--121937084 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
121937018 ATCTACAAAT
* * *
121937028 AATTCAAAATTTTTAAAAATGTTTAAAAA
1 AATTCAAAATTTTAAAAAATATATAAAAA
121937057 AATT-AAAATTTTAAAAAATATATAAAAA
1 AATTCAAAATTTTAAAAAATATATAAAAA
121937085 GTTTATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (29 bp):
AATTCAAAATTTTAAAAAATATATAAAAA
Found at i:121938018 original size:3 final size:3
Alignment explanation
Indices: 121938010--121938050 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
121938000 TTAAATCTAA
121938010 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
121938051 AAGATTATGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:121939131 original size:2 final size:2
Alignment explanation
Indices: 121939124--121939158 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
121939114 AATTATTATT
121939124 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121939159 TAAAAAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121942326 original size:15 final size:15
Alignment explanation
Indices: 121942302--121942343 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
121942292 TATTATTTTG
*
121942302 AATTTAATAT-TTAA
1 AATTTTATATATTAA
121942316 TAATTTTATATATTAA
1 -AATTTTATATATTAA
121942332 AATTTTATATAT
1 AATTTTATATAT
121942344 AGTCACTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTATATATTAA
Found at i:121947746 original size:6 final size:7
Alignment explanation
Indices: 121947730--121947756 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
121947720 AGATTTTACC
121947730 TTTTTAT
1 TTTTTAT
121947737 TTTTTAT
1 TTTTTAT
121947744 TTTTTAT
1 TTTTTAT
121947751 TTTTTA
1 TTTTTA
121947757 CTCGGTTCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:121948139 original size:9 final size:9
Alignment explanation
Indices: 121948102--121948237 Score: 57
Period size: 9 Copynumber: 14.6 Consensus size: 9
121948092 TATAATTTTT
121948102 TTATAAAAA
1 TTATAAAAA
*
121948111 TAATTAAAAA
1 TTA-TAAAAA
*
121948121 TTGTAAAAAAA
1 -T-TATAAAAA
121948132 TTATAAAAA
1 TTATAAAAA
121948141 -TA-AGAAAA
1 TTATA-AAAA
*
121948149 TTATCAAATA
1 TTAT-AAAAA
* *
121948159 TTAATACATA
1 TT-ATAAAAA
*
121948169 TTAAAAAAA
1 TTATAAAAA
**
121948178 ACATAAAAA
1 TTATAAAAA
* *
121948187 TTGATATCAAC
1 TT-ATA-AAAA
121948198 TTATAAAAA
1 TTATAAAAA
121948207 TTAT--AAA
1 TTATAAAAA
121948214 TTATAAAAA
1 TTATAAAAA
121948223 TT-TAGTAAAA
1 TTATA--AAAA
121948233 TTATA
1 TTATA
121948238 GTTTTTTCTA
Statistics
Matches: 94, Mismatches: 18, Indels: 28
0.67 0.13 0.20
Matches are distributed among these distances:
7 8 0.09
8 8 0.09
9 32 0.34
10 30 0.32
11 15 0.16
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:121948304 original size:19 final size:20
Alignment explanation
Indices: 121948268--121948310 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
121948258 AATGCATATT
* *
121948268 TAAAATTTTATAAAAAATAC
1 TAAAATTCTATAAAAAATAA
121948288 TAAAATTCTAT-AAAAATAA
1 TAAAATTCTATAAAAAATAA
121948307 TAAA
1 TAAA
121948311 CAATAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAATTCTATAAAAAATAA
Found at i:121948977 original size:17 final size:17
Alignment explanation
Indices: 121948955--121948998 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
121948945 ATGAATTTTC
121948955 ATATTTTTTA-ATATTT
1 ATATTTTTTATATATTT
121948971 AATATTTTTTATATATTT
1 -ATATTTTTTATATATTT
121948989 ATAATTTTTT
1 AT-ATTTTTT
121948999 CTGATTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATATTTTTTATATATTT
Found at i:121948979 original size:18 final size:19
Alignment explanation
Indices: 121948958--121949016 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
121948948 AATTTTCATA
121948958 TTTTTTAATATTTAAT-A-
1 TTTTTTAATATTTAATAAT
121948975 TTTTTTATATATTT-ATAAT
1 TTTTTTA-ATATTTAATAAT
* *
121948994 TTTTTCTGAT-TTTAATCAT
1 TTTTT-TAATATTTAATAAT
121949013 TTTT
1 TTTT
121949017 ATGGTAAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 9 0.26
18 10 0.29
19 15 0.43
20 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTTAATATTTAATAAT
Found at i:121959126 original size:2 final size:2
Alignment explanation
Indices: 121959119--121959169 Score: 68
Period size: 2 Copynumber: 25.5 Consensus size: 2
121959109 GCCGTTTATT
* *
121959119 TA TA TA TA TA TA TG TA TA TA TG TA TA TA TGA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
121959161 TA TA TA TA T
1 TA TA TA TA T
121959170 TCTTTTTTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
1 1 0.02
2 41 0.95
3 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (2 bp):
TA
Found at i:121964843 original size:11 final size:10
Alignment explanation
Indices: 121964823--121964847 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
121964813 AAACACACAC
121964823 AAAAATAAAA
1 AAAAATAAAA
121964833 AAAAATAAAA
1 AAAAATAAAA
121964843 AAAAA
1 AAAAA
121964848 CATGGCCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:121969430 original size:16 final size:17
Alignment explanation
Indices: 121969399--121969431 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
121969389 AATTTGTTAT
121969399 TATATCAATCAAAATTA
1 TATATCAATCAAAATTA
*
121969416 TATAT-AATTAAAATTA
1 TATATCAATCAAAATTA
121969432 ATAAGGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
TATATCAATCAAAATTA
Found at i:121971611 original size:16 final size:15
Alignment explanation
Indices: 121971586--121971619 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
121971576 GCGAATAGTA
*
121971586 AAAGCAACAAAAATC
1 AAAGCAACAAAAAGC
121971601 AAAGTCAACAAAAAGC
1 AAAG-CAACAAAAAGC
121971617 AAA
1 AAA
121971620 ATCGAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.68, C:0.18, G:0.09, T:0.06
Consensus pattern (15 bp):
AAAGCAACAAAAAGC
Found at i:121974728 original size:3 final size:3
Alignment explanation
Indices: 121974720--121974744 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
121974710 TCTCTTCTCC
121974720 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
121974745 ATTTGCTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:121979364 original size:20 final size:17
Alignment explanation
Indices: 121979320--121979393 Score: 69
Period size: 17 Copynumber: 4.1 Consensus size: 17
121979310 AAATGTATAT
121979320 TAAAAATATAAAAAATA
1 TAAAAATATAAAAAATA
*
121979337 AAATAAATATATAAAAATTTA
1 TAA-AAATATA-AAAAA--TA
*
121979358 TAAAAATTTAAAAACATA
1 TAAAAATATAAAAA-ATA
*
121979376 T-AAATTATAAAAAATA
1 TAAAAATATAAAAAATA
121979392 TA
1 TA
121979394 TAATTTAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
16 4 0.09
17 12 0.26
18 10 0.22
19 9 0.20
20 7 0.15
21 4 0.09
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAAATATAAAAAATA
Found at i:121979379 original size:10 final size:9
Alignment explanation
Indices: 121979316--121979393 Score: 63
Period size: 9 Copynumber: 8.6 Consensus size: 9
121979306 CATTAAATGT
*
121979316 ATATTAAAA
1 ATATAAAAA
121979325 ATATAAAAA
1 ATATAAAAA
121979334 ATA-AAATAA
1 ATATAAA-AA
121979343 ATATATAAAA
1 ATATA-AAAA
*
121979353 ATTTATAAAA
1 ATATA-AAAA
*
121979363 ATTTAAAAA
1 ATATAAAAA
121979372 CATAT--AAA
1 -ATATAAAAA
*
121979380 TTATAAAAA
1 ATATAAAAA
121979389 ATATA
1 ATATA
121979394 TAATTTAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
7 3 0.05
8 6 0.10
9 27 0.47
10 20 0.34
11 2 0.03
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (9 bp):
ATATAAAAA
Found at i:121979394 original size:18 final size:18
Alignment explanation
Indices: 121979326--121979405 Score: 69
Period size: 16 Copynumber: 4.5 Consensus size: 18
121979316 ATATTAAAAA
*
121979326 TATAAAAAATAAAATAAAT
1 TATAAAAAAT-ATATAAAT
* *
121979345 ATATAAAAATTTATAAAAAT
1 -TATAAAAA-ATATATAAAT
*
121979365 T-T-AAAAACATATAAAT
1 TATAAAAAATATATAAAT
121979381 TATAAAAAATATAT-AAT
1 TATAAAAAATATATAAAT
121979398 T-TAAAAAA
1 TATAAAAAA
121979406 GTAAAATATT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
16 15 0.30
17 9 0.18
18 10 0.20
19 1 0.02
20 14 0.28
21 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAAAAATATATAAAT
Found at i:121980661 original size:22 final size:21
Alignment explanation
Indices: 121980624--121980676 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
121980614 TTATTTGGTG
* *
121980624 AAAATT-TATAATTAATTAAT
1 AAAATTATAAAATTAATGAAT
*
121980644 AATATTAGTAAAATTAATGAAT
1 AAAATTA-TAAAATTAATGAAT
121980666 AAAATTATAAA
1 AAAATTATAAA
121980677 TTTTATTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 5 0.19
21 4 0.15
22 18 0.67
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AAAATTATAAAATTAATGAAT
Found at i:121982163 original size:91 final size:89
Alignment explanation
Indices: 121982024--121982244 Score: 263
Period size: 91 Copynumber: 2.5 Consensus size: 89
121982014 CAATTAGTTT
* *
121982024 GGGCTTAATTGC-TTTTTTTG-AAAGCTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTAC
1 GGGCTTAATTGCTTTTTTTTGAAAAGTTTGAGGG-CTTTTTGATGCATTTTAAAAGTTCAAGTAC
* * * *
121982087 TC-AATTG-AGTGAAAAAAAAG-TAG
65 CCTAAATGAAG-GAAAAAAAAGAAAA
*
121982110 GGGCTTAATTGCTTTTTTTTGTGAAAAGGTTTGAGGGCCTTTTTGATGTATTTTAAAAGTTCAAG
1 GGGCTTAATTGC-TTTTTTT-TGAAAA-GTTTGAGGG-CTTTTTGATGCATTTTAAAAGTTCAAG
*
121982175 TACCCTAAATGAAGGCAAAAAAAGAAAA
62 TACCCTAAATGAAGGAAAAAAAAGAAAA
*
121982203 GGACTTAATTGCTTTTTTTTGAAATAGTTTGAGGGCTTTTTG
1 GGGCTTAATTGCTTTTTTTTGAAA-AGTTTGAGGGCTTTTTG
121982245 CACCTTTAAA
Statistics
Matches: 116, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
86 12 0.10
88 6 0.05
89 2 0.02
90 10 0.09
91 51 0.44
92 21 0.18
93 14 0.12
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (89 bp):
GGGCTTAATTGCTTTTTTTTGAAAAGTTTGAGGGCTTTTTGATGCATTTTAAAAGTTCAAGTACC
CTAAATGAAGGAAAAAAAAGAAAA
Found at i:121985085 original size:47 final size:49
Alignment explanation
Indices: 121984963--121985142 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
121984953 TGTAACCCGC
* * * *
121984963 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
121985009 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
121985059 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
121985103 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
121985143 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:121985131 original size:94 final size:93
Alignment explanation
Indices: 121984971--121985142 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
121984961 GCCCATAAGT
* * *
121984971 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
121985036 CGAGTTCGGATGCCTAGTTACATCTTAC
66 CGAGTTCGGATGCCTAGTTACATCTTAC
*
121985064 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
121985129 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
121985143 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTTAC
Found at i:121987024 original size:49 final size:50
Alignment explanation
Indices: 121986950--121987194 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
121986940 TAGCCGAAGC
* * *
121986950 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* * *
121986998 TAGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAC
1 TA-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* ** * * *
121987049 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACA-A
* * * * * *
121987100 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCA-AT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
*
121987149 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
121987195 TCACAATAGT
Statistics
Matches: 166, Mismatches: 27, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
48 2 0.01
49 79 0.48
50 45 0.27
51 40 0.24
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
Found at i:121991671 original size:21 final size:21
Alignment explanation
Indices: 121991647--121991689 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
121991637 TTAATTGGAG
121991647 AGATGGGTTTGCAACTTCATT
1 AGATGGGTTTGCAACTTCATT
*
121991668 AGATGGGTTTGGAACTTCATT
1 AGATGGGTTTGCAACTTCATT
121991689 A
1 A
121991690 ACATCCATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (21 bp):
AGATGGGTTTGCAACTTCATT
Found at i:121996204 original size:29 final size:30
Alignment explanation
Indices: 121996167--121996225 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
121996157 TTTTTTTAAT
121996167 TTTTAAAGG-TCTAATGAGAATTTTTAAAAA
1 TTTTAAAGGATCTAATGA-AATTTTTAAAAA
*
121996197 TTTT-AAGGATCTAATTAAATTTTTAAAAA
1 TTTTAAAGGATCTAATGAAATTTTTAAAAA
121996226 CTCTAGGGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.42
Consensus pattern (30 bp):
TTTTAAAGGATCTAATGAAATTTTTAAAAA
Found at i:121997448 original size:41 final size:41
Alignment explanation
Indices: 121997391--121997475 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
121997381 ATAAAGAATT
121997391 ATATCCAAATTTAATTAATGAATAATTTTTCAATAATGGGG
1 ATATCCAAATTTAATTAATGAATAATTTTTCAATAATGGGG
*
121997432 ATATCCAAATTTAATTAATGGATAATTTTTCAATAATGGGG
1 ATATCCAAATTTAATTAATGAATAATTTTTCAATAATGGGG
121997473 ATA
1 ATA
121997476 GCATAAATCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (41 bp):
ATATCCAAATTTAATTAATGAATAATTTTTCAATAATGGGG
Found at i:121997832 original size:24 final size:24
Alignment explanation
Indices: 121997800--121997868 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
121997790 CGTAGAAAAC
121997800 AAAGTTTATATAAAATTCTTATTT
1 AAAGTTTATATAAAATTCTTATTT
* *
121997824 AAAGTTTATCT-AAATTCAATATTT
1 AAAGTTTATATAAAATTC-TTATTT
*
121997848 AAA-TTTAAATAAGAATT-TTAT
1 AAAGTTTATATAA-AATTCTTAT
121997869 ATAATTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 14 0.38
24 19 0.51
25 4 0.11
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (24 bp):
AAAGTTTATATAAAATTCTTATTT
Found at i:122001355 original size:20 final size:21
Alignment explanation
Indices: 122001325--122001364 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
122001315 TCTTGATTTA
122001325 TTTATTTATTACTTT-TTTTGT
1 TTTATTTATTA-TTTATTTTGT
122001346 TTTA-TTATTATTTATTTTG
1 TTTATTTATTATTTATTTTG
122001365 AATTTCCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 11 0.61
21 4 0.22
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (21 bp):
TTTATTTATTATTTATTTTGT
Found at i:122003394 original size:2 final size:2
Alignment explanation
Indices: 122003387--122003414 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
122003377 ATTTAGCTTT
122003387 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122003415 GGGCTTATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:122004551 original size:12 final size:12
Alignment explanation
Indices: 122004534--122004558 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
122004524 CATAACTAAG
122004534 TCTACCCTTTAA
1 TCTACCCTTTAA
122004546 TCTACCCTTTAA
1 TCTACCCTTTAA
122004558 T
1 T
122004559 GGGTTTATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (12 bp):
TCTACCCTTTAA
Found at i:122008835 original size:34 final size:34
Alignment explanation
Indices: 122008792--122008869 Score: 147
Period size: 34 Copynumber: 2.3 Consensus size: 34
122008782 AACCTACTGC
122008792 AGTAGAACTATGGTAATCATCAGTTACTTGCAAT
1 AGTAGAACTATGGTAATCATCAGTTACTTGCAAT
122008826 AGTAGAACTATGGTAATCATCAGTTACTTGCAAT
1 AGTAGAACTATGGTAATCATCAGTTACTTGCAAT
*
122008860 AGTAGGACTA
1 AGTAGAACTA
122008870 ACTCGTCTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (34 bp):
AGTAGAACTATGGTAATCATCAGTTACTTGCAAT
Found at i:122021743 original size:5 final size:5
Alignment explanation
Indices: 122021733--122021779 Score: 94
Period size: 5 Copynumber: 9.4 Consensus size: 5
122021723 TTATGTTTTA
122021733 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
122021780 ATAAACATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:122023106 original size:18 final size:19
Alignment explanation
Indices: 122023083--122023121 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
122023073 ATATATAGAT
122023083 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
122023101 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
122023120 AT
1 AT
122023122 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:122023471 original size:39 final size:39
Alignment explanation
Indices: 122023361--122023495 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
122023351 GACCTCGAGT
* * * *
122023361 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
122023402 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
122023440 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
122023479 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
122023496 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:122037582 original size:23 final size:24
Alignment explanation
Indices: 122037545--122037592 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
122037535 CAACCAAATC
122037545 AATTCAATACATATTT-TCAAGATA
1 AATTCAATACATATTTAT-AAGATA
*
122037569 AATTC-ATGCATATTTATAAGATA
1 AATTCAATACATATTTATAAGATA
122037592 A
1 A
122037593 CGTCATCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (24 bp):
AATTCAATACATATTTATAAGATA
Found at i:122037598 original size:23 final size:23
Alignment explanation
Indices: 122037554--122037598 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
122037544 CAATTCAATA
*
122037554 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
122037577 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
122037599 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:122041412 original size:23 final size:23
Alignment explanation
Indices: 122041380--122041423 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
122041370 ACTACCATTT
122041380 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
122041403 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
122041424 ATAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:122041416 original size:13 final size:11
Alignment explanation
Indices: 122041384--122041426 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
122041374 CCATTTTCTA
*
122041384 AATAAAATAAT
1 AATAAAATATT
122041395 AAT-AAATATCT
1 AATAAAATAT-T
122041406 AAGTAAAATATT
1 AA-TAAAATATT
122041418 AATAAAATA
1 AATAAAATA
122041427 ATTTTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:122041984 original size:15 final size:15
Alignment explanation
Indices: 122041960--122042010 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
122041950 TATAAATTTT
122041960 TTAAAATAATAAAAA
1 TTAAAATAATAAAAA
*
122041975 TTAAACTAAT-AAAA
1 TTAAAATAATAAAAA
* *
122041989 TATACAAATATTAAAAG
1 T-TA-AAATAATAAAAA
122042006 TTAAA
1 TTAAA
122042011 TTTATCTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 5 0.17
15 13 0.45
16 7 0.24
17 4 0.14
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
TTAAAATAATAAAAA
Found at i:122042769 original size:31 final size:30
Alignment explanation
Indices: 122042687--122042770 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 30
122042677 AGTTTTTGTA
* * *
122042687 TTTTAATTTGAACAATTTTAGTTTTTTTATT
1 TTTTAATTTTAA-AATTTTAGTCTTTATATT
122042718 TTTTGAATTAATT-AAA-TTTAGTCTTTATATT
1 TTTT-AATT--TTAAAATTTTAGTCTTTATATT
122042749 TTTTAAATTTTAAAATTTTAGT
1 TTTT-AATTTTAAAATTTTAGT
122042771 TATGACCCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
29 2 0.05
30 3 0.07
31 31 0.70
32 6 0.14
33 1 0.02
34 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (30 bp):
TTTTAATTTTAAAATTTTAGTCTTTATATT
Found at i:122045389 original size:6 final size:6
Alignment explanation
Indices: 122045380--122045411 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
122045370 CAAAGAAAAA
*
122045380 GGCAAT GGCAAT GGCAAT GGCAAT GGCGAT GG
1 GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT GG
122045412 GAAGGAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.41, T:0.16
Consensus pattern (6 bp):
GGCAAT
Found at i:122055153 original size:2 final size:2
Alignment explanation
Indices: 122055146--122055176 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
122055136 GAATACAAAA
122055146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122055177 AAATAATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:122056562 original size:27 final size:28
Alignment explanation
Indices: 122056532--122056587 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
122056522 CTTACAATAT
122056532 GGGTAAAAGT-AAAATATTTATGTAAAA
1 GGGTAAAAGTAAAAATATTTATGTAAAA
122056559 GGGTAAAAGTAAAAAATATTTATGTAAAA
1 GGGTAAAAGT-AAAAATATTTATGTAAAA
122056588 ATATTTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 10 0.37
29 17 0.63
ACGTcount: A:0.54, C:0.00, G:0.18, T:0.29
Consensus pattern (28 bp):
GGGTAAAAGTAAAAATATTTATGTAAAA
Found at i:122056601 original size:14 final size:14
Alignment explanation
Indices: 122056569--122056602 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
122056559 GGGTAAAAGT
*
122056569 AAAAAATATTTATG
1 AAAAAATATTTATA
*
122056583 TAAAAATATTTATA
1 AAAAAATATTTATA
122056597 AAAAAA
1 AAAAAA
122056603 AAAAGTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAAAATATTTATA
Found at i:122058687 original size:131 final size:131
Alignment explanation
Indices: 122058435--122058783 Score: 339
Period size: 131 Copynumber: 2.7 Consensus size: 131
122058425 TTGCCTCACC
* * * * * * * * *
122058435 TTAGAAAATACGAGTGAAATTCC-GAAGGGATCTTCGATTGTTTTGAGCAAATGAAAAAGCGCAA
1 TTAGAAAACATGAGTGAAA-ACCTGAAAGGATATTCGATTGTTTTGAGCAAACGAGAAATCACAA
* * *
122058499 CCCAGCACGATAGGGC-TCGATTCTCAAATTGCCAAACATCGAACATCGCCTTCGTTTTGAAAAT
65 CCCAGCACGATAGGGCAT-GATTCTCAAATTACCAAACACCGAACATCACCTTCGTTTT-AAAAT
122058563 -TTT
128 ATTT
*
122058566 TTA-ATAAACATGAGTGAAAACCT-AAAGGCATATTCGATTGTTTTGAGCAAACGAGGAATCACA
1 TTAGA-AAACATGAGTGAAAACCTGAAAGG-ATATTCGATTGTTTTGAGCAAACGAGAAATCACA
* * ** *
122058629 ACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACACCGAGTATCACCTTTGTTTTAAAATA
64 ACCCAGCACGATAGGGCATGATTCTCAAATTACCAAACACCGAACATCACCTTCGTTTTAAAATA
122058694 TTT
129 TTT
* *** * * * * * *
122058697 TTAGAAGACATGAGTGAAATTTTGAAAGGATATTTGATTATTTTAAACAATCGAGAAATTACAAC
1 TTAGAAAACATGAGTGAAAACCTGAAAGGATATTCGATTGTTTTGAGCAAACGAGAAATCACAAC
* * *
122058762 CCAGCATGTTAGGGCACGATTC
66 CCAGCACGATAGGGCATGATTC
122058784 CGCGAATTGC
Statistics
Matches: 179, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
130 12 0.07
131 160 0.89
132 7 0.04
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (131 bp):
TTAGAAAACATGAGTGAAAACCTGAAAGGATATTCGATTGTTTTGAGCAAACGAGAAATCACAAC
CCAGCACGATAGGGCATGATTCTCAAATTACCAAACACCGAACATCACCTTCGTTTTAAAATATT
T
Found at i:122059377 original size:2 final size:2
Alignment explanation
Indices: 122059370--122059395 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
122059360 ATTAATAATA
122059370 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
122059396 TGTTAATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122059671 original size:2 final size:2
Alignment explanation
Indices: 122059655--122059687 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
122059645 GAAATAAGTA
*
122059655 AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122059688 CAATATGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:122063707 original size:2 final size:2
Alignment explanation
Indices: 122063700--122063729 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
122063690 TTAAACAATA
122063700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122063730 GAATATTCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122063954 original size:25 final size:27
Alignment explanation
Indices: 122063909--122063971 Score: 87
Period size: 25 Copynumber: 2.4 Consensus size: 27
122063899 AAAACAAGTC
122063909 GAAAT-AATAATATAATGAAAAGGCTT
1 GAAATAAATAATATAATGAAAAGGCTT
*
122063935 GAAATAAATAATA-AAT-AAAAGGTTT
1 GAAATAAATAATATAATGAAAAGGCTT
*
122063960 GCAATAAATAAT
1 GAAATAAATAAT
122063972 GAAAGTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 19 0.56
26 8 0.24
27 7 0.21
ACGTcount: A:0.57, C:0.03, G:0.13, T:0.27
Consensus pattern (27 bp):
GAAATAAATAATATAATGAAAAGGCTT
Found at i:122064196 original size:15 final size:16
Alignment explanation
Indices: 122064176--122064205 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
122064166 CTACATAATG
122064176 TATATAA-ATGTAAAA
1 TATATAATATGTAAAA
122064191 TATATAATATGTAAA
1 TATATAATATGTAAA
122064206 TATTTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (16 bp):
TATATAATATGTAAAA
Found at i:122064629 original size:26 final size:26
Alignment explanation
Indices: 122064600--122064650 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
122064590 AAGATTTCGT
* *
122064600 AATAATACGTATGATAGAC-TAAAATA
1 AATAATACATATAATAG-CTTAAAATA
122064626 AATAATACATATAATAGCTTAAAAT
1 AATAATACATATAATAGCTTAAAAT
122064651 GTATATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (26 bp):
AATAATACATATAATAGCTTAAAATA
Found at i:122068112 original size:47 final size:47
Alignment explanation
Indices: 122068043--122068163 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
122068033 TTCAGAGAAA
* *
122068043 TGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* *
122068090 TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* *
122068137 TGTGATATGTGAT-CCGTGTAAGACCAT
1 TGTGATATGTGCTACCGTATAAGACCAT
122068164 GGCTGGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
46 12 0.18
47 55 0.82
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
Found at i:122068183 original size:93 final size:97
Alignment explanation
Indices: 122068007--122068214 Score: 219
Period size: 93 Copynumber: 2.1 Consensus size: 97
122067997 TGTGATTTCC
* * *
122068007 GTATAAGACCATAGCTGGGCTATGGCTTCAGAGAAATGTGATATGTGCTTCCGTATAAGACCATA
1 GTATAAGACCATAGCTGGGATATGGCATCA-AG--ATGTGATATGTGCATCCGTATAAGACCATA
*
122068072 TCCGGGATATGGCATCGG-TGTGATATGTGCTACT
63 GCCGGGATATGGCATCGGATGTGATATGTGCTACT
* * * *
122068106 GTATAAGACCATATCTGGGATATGGCATC-AG-TGTGATATGTG-ATCCGTGTAAGACCATGGCT
1 GTATAAGACCATAGCTGGGATATGGCATCAAGATGTGATATGTGCATCCGTATAAGACCATAGCC
* * *
122068168 GGGCTATGGCCTCGGTATGTGATATATGACTA-T
66 GGGATATGGCATCGG-ATGTGATATGTG-CTACT
**
122068201 GTGCAAGACCATAG
1 GTATAAGACCATAG
122068215 TTTTACTATG
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
93 28 0.30
94 11 0.12
95 22 0.24
96 3 0.03
97 2 0.02
99 26 0.28
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (97 bp):
GTATAAGACCATAGCTGGGATATGGCATCAAGATGTGATATGTGCATCCGTATAAGACCATAGCC
GGGATATGGCATCGGATGTGATATGTGCTACT
Found at i:122070163 original size:17 final size:18
Alignment explanation
Indices: 122070127--122070164 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
122070117 TAAACCATCC
122070127 ACTACCTCCATCACCCCT
1 ACTACCTCCATCACCCCT
122070145 ACTACCTCCATCA-CCCT
1 ACTACCTCCATCACCCCT
122070162 ACT
1 ACT
122070165 TGTTATAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.24, C:0.53, G:0.00, T:0.24
Consensus pattern (18 bp):
ACTACCTCCATCACCCCT
Found at i:122071276 original size:126 final size:126
Alignment explanation
Indices: 122071048--122071288 Score: 419
Period size: 126 Copynumber: 1.9 Consensus size: 126
122071038 TGATCTTCTC
* * * *
122071048 TCAAAATTTTTCAAAATGAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACG
1 TCAAAAATTTTCAAAATAAAGGAAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTAACG
122071113 TACTGGGTTTCGCTTTCTTTATTTGTCTTGAAGATTCGAATATCCTCTTACCAATTCACTT
66 TACTGGGTTTCGCTTTCTTTATTTGTCTTGAAGATTCGAATATCCTCTTACCAATTCACTT
122071174 TCAAAAATTTTCAAAATAAAGGAAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTAACG
1 TCAAAAATTTTCAAAATAAAGGAAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTAACG
* * *
122071239 TACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 TACTGGGTTTCGCTTTCTTTATTTGTCTTGAAGATTCGAATATCCTCTTA
122071289 AGGCTAAAAC
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 108 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
TCAAAAATTTTCAAAATAAAGGAAATGTTCAGTATTTAAAGAATTCGAAGAATCGTGCCCTAACG
TACTGGGTTTCGCTTTCTTTATTTGTCTTGAAGATTCGAATATCCTCTTACCAATTCACTT
Found at i:122079019 original size:14 final size:14
Alignment explanation
Indices: 122079000--122079027 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
122078990 ACAGTAGTCA
122079000 CGAAATAGCTTTAG
1 CGAAATAGCTTTAG
122079014 CGAAATAGCTTTAG
1 CGAAATAGCTTTAG
122079028 GTTTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (14 bp):
CGAAATAGCTTTAG
Found at i:122088573 original size:24 final size:24
Alignment explanation
Indices: 122088541--122088586 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
122088531 CTAATTAAAT
* *
122088541 TTTATAAATAATTAATATTTATTG
1 TTTAAAAATAATTAAAATTTATTG
*
122088565 TTTAAAAATATTTAAAATTTAT
1 TTTAAAAATAATTAAAATTTAT
122088587 ATTTCATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTAAAAATAATTAAAATTTATTG
Found at i:122091463 original size:17 final size:16
Alignment explanation
Indices: 122091412--122091463 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
122091402 CTCGGCCAAT
*
122091412 TTTTTAAATT-TATAA
1 TTTTTATATTATATAA
* *
122091427 TATTTTATATTATGTTA
1 T-TTTTATATTATATAA
122091444 TTTTATATATTATATAA
1 TTTT-TATATTATATAA
122091461 TTT
1 TTT
122091464 ATAATAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 1 0.03
16 11 0.38
17 17 0.59
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTTTATATTATATAA
Found at i:122091955 original size:15 final size:15
Alignment explanation
Indices: 122091935--122091963 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
122091925 ATGAGCTCTA
122091935 ATTGATTATAATAAT
1 ATTGATTATAATAAT
122091950 ATTGATTATAATAA
1 ATTGATTATAATAA
122091964 GTTGCAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
ATTGATTATAATAAT
Found at i:122095747 original size:112 final size:111
Alignment explanation
Indices: 122095551--122095751 Score: 269
Period size: 112 Copynumber: 1.8 Consensus size: 111
122095541 TTTGAAACAG
* * * *
122095551 AAAATGGTATATGAACATGTTTCTTAAGAATACATAAAATATTTGTTTCCCAAACACACCTTTTT
1 AAAATAGTATATGAACATATTTCTTAAGAATACATAAAATATTCGTTTCCCAAACACACCTTTGT
* *
122095616 TGGTCATGGTTGCATAAAACAAATGTTATCACAAGGAATAAGACTC
66 CGGTCATGGTTGCAGAAAACAAATGTTATCACAAGGAATAAGACTC
* * *** *
122095662 AAAATAGTATATGGACATATTTCTTAAAGAATACTTAAAATATTCGCTTTCCCCCGCATACC-TT
1 AAAATAGTATATGAACATATTTCTT-AAGAATACATAAAATATTCG-TTTCCCAAACACACCTTT
122095726 GTCGGTCATGGTTGCAGAAAACAAAT
64 GTCGGTCATGGTTGCAGAAAACAAAT
122095752 ATGGGTGCCA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
111 22 0.29
112 43 0.57
113 11 0.14
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (111 bp):
AAAATAGTATATGAACATATTTCTTAAGAATACATAAAATATTCGTTTCCCAAACACACCTTTGT
CGGTCATGGTTGCAGAAAACAAATGTTATCACAAGGAATAAGACTC
Found at i:122098897 original size:15 final size:16
Alignment explanation
Indices: 122098877--122098910 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
122098867 AAAAATATAT
122098877 TATTAATA-TATCAAA
1 TATTAATATTATCAAA
*
122098892 TATTAATATTATCTAA
1 TATTAATATTATCAAA
122098908 TAT
1 TAT
122098911 ACTAACAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTAATATTATCAAA
Found at i:122098970 original size:25 final size:26
Alignment explanation
Indices: 122098942--122098992 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
122098932 TTACAATAAA
* *
122098942 TTTTAAAAATTTATTA-TATGTCTTT
1 TTTTAAAAATATATTATTATATCTTT
122098967 TTTTAAAAATATATTATTATATCTTT
1 TTTTAAAAATATATTATTATATCTTT
122098993 CTAAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (26 bp):
TTTTAAAAATATATTATTATATCTTT
Found at i:122107570 original size:22 final size:22
Alignment explanation
Indices: 122107545--122107596 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
122107535 GATTTATGTA
*
122107545 TTATTTTAAATATAAAATTACT
1 TTATTTTAAAAATAAAATTACT
*
122107567 TTATTTTAAAAATAAAATTAGT
1 TTATTTTAAAAATAAAATTACT
122107589 TTATTTTA
1 TTATTTTA
122107597 TAGGGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
TTATTTTAAAAATAAAATTACT
Found at i:122108195 original size:16 final size:16
Alignment explanation
Indices: 122108174--122108211 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
122108164 TTTAGGGTTT
122108174 ATAATTATT-TCTTTTA
1 ATAATT-TTGTCTTTTA
122108190 ATAATTTTGTCTTTTA
1 ATAATTTTGTCTTTTA
122108206 A-AATTT
1 ATAATTT
122108212 GAATCTGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (16 bp):
ATAATTTTGTCTTTTA
Found at i:122110039 original size:27 final size:28
Alignment explanation
Indices: 122109990--122110047 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
122109980 TCTTTTTAAT
*
122109990 TTTTAAAGGATTAAATTAAAAATTTATA
1 TTTTAAAGGATTAAAATAAAAATTTATA
* *
122110018 TTTTAAGGGA-TAAAATATAAATTTATA
1 TTTTAAAGGATTAAAATAAAAATTTATA
122110045 TTT
1 TTT
122110048 ATTAATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (28 bp):
TTTTAAAGGATTAAAATAAAAATTTATA
Found at i:122110769 original size:13 final size:13
Alignment explanation
Indices: 122110753--122110783 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
122110743 ATAGTTTACC
122110753 TTTAATAATTTAA
1 TTTAATAATTTAA
122110766 TTTAATAATTTAA
1 TTTAATAATTTAA
122110779 TTTAA
1 TTTAA
122110784 GACGTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTAATAATTTAA
Found at i:122116436 original size:8 final size:8
Alignment explanation
Indices: 122116423--122116451 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
122116413 ATTCCACCGT
122116423 AAAAAAAG
1 AAAAAAAG
122116431 AAAAAAAG
1 AAAAAAAG
122116439 AAAAAAA-
1 AAAAAAAG
122116446 AAAAAA
1 AAAAAA
122116452 CATTTGCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:122124003 original size:432 final size:417
Alignment explanation
Indices: 122123207--122124047 Score: 1117
Period size: 432 Copynumber: 2.0 Consensus size: 417
122123197 GTCAATCTAT
* ** * * * *
122123207 TAGTAAGGATTCAGATGCCTGTGATGAACTGGGTGGCATAATAAGGAAGATGGAGCCTAGTTTGG
1 TAGTAAGGATTCAGATGCCAGTGATGAACAAGGCGGCATAATAAAGAAGATGGAACCTAGTTTGA
122123272 AACAAGGAGATAGTGGTCTTTCTAAAGTAGGCTTACAGCCTGCCTTACAGACAGGTGAGATTCCA
66 AACAAGGAGATAGTGGTCTTTCTAAAGTAGGCTTACAGCCTGCCTTACAGACAGGTGAGATTCCA
* * ** *
122123337 GGAAAATTATCTGGGTTGGAAGGTGATGTGTTGGGAGATCATGACGATGTCTCTCAACCACATAA
131 GGAAAATTATCTGGGTTGAAAGGTGATGTATCAGGAGATCATGAAGATGTCTCTCAACCACATAA
** * * * *
122123402 ATTTGACCCCTCTGTTGATGGGGCATTGAAAGCTCCAAATATAAGAAATACTGACTTATCTGAGA
196 ATTTGACCCCTCTACTGATAGGGCATTGAAAGCTCCAAACACAAGAAATACTGACTTACCTGAGA
* * * * *
122123467 GAGAGGAGTCTAAAGATGGTGAAGAAATTGTTGTTAATGAGAATCAAGTGGAAGTTTCGGTTGAT
261 GAGAGGAGTCTAAAGATGGTGAACAAATTGTTGCTAATCAAAATCAAGTGGAAGCTTCGGTTGAT
* * * **
122123532 CAAGTTGTGGATAACAGGGAACAGGTTGATAACTTTGCTTCTGGGTCTCAAACTGATTTTGTGAT
326 CAAGTTGTGGATAACAGGGAACAGGTAGATAAATTTGCTTCTGGGTCACAAACTGATACTGTGAT
122123597 TCCCTCTGTGCAAAACACCTGTGCCAG
391 TCCCTCTGTGCAAAACACCTGTGCCAG
* *
122123624 TAGTAAGGATTCAGATGCCAGTGATGAAGAAGGCGGCATAATAAAGCAGATGGAACCTAGTTTGA
1 TAGTAAGGATTCAGATGCCAGTGATGAACAAGGCGGCATAATAAAGAAGATGGAACCTAGTTTGA
* * *
122123689 AACATGGAGATTGTGGTCTTTCTGAAGTAGATGGTGGCTTACAGCCTGCCTTACAGACAGGTGAG
66 AACAAGGAGATAGTGGTCTTTCT-AA--AG-T--AGGCTTACAGCCTGCCTTACAGACAGGTGAG
* *
122123754 ATTCCAGGAAAGTTTTCTGGGTTGAAAGGTGATGTATCAGGAGATCATTTGTTGGTTGAAGATGT
125 ATTCCAGGAAAATTATCTGGGTTGAAAGGTGATGTATCAGGAGATCA---------TGAAGATGT
* * * * * * *
122123819 TTCTCAATCACATGAATTTGAGCCCTCTACTGATAGGGCATTGGAAGTTCCAAACACGAGAAATA
181 CTCTCAACCACATAAATTTGACCCCTCTACTGATAGGGCATTGAAAGCTCCAAACACAAGAAATA
* *
122123884 CTGACTTACCTGAGAGAGATGAGTCTAAAGATTGTGAACAAATTGTTGCTAATCAAAATCAAGTG
246 CTGACTTACCTGAGAGAGAGGAGTCTAAAGATGGTGAACAAATTGTTGCTAATCAAAATCAAGTG
122123949 GAAGCTTCGGTTGATCAA-TTAGTGGATAACAGGGAACAGGTAGATAAATTTGCTTCTGGGTCAC
311 GAAGCTTCGGTTGATCAAGTT-GTGGATAACAGGGAACAGGTAGATAAATTTGCTTCTGGGTCAC
**
122124013 AAGTTGATACTGTGATTCCCTCTGTGCAAAACACC
375 AAACTGATACTGTGATTCCCTCTGTGCAAAACACC
122124048 CATTCCAGTA
Statistics
Matches: 362, Mismatches: 46, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
417 77 0.21
418 2 0.01
420 2 0.01
421 1 0.00
423 71 0.20
431 2 0.01
432 207 0.57
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (417 bp):
TAGTAAGGATTCAGATGCCAGTGATGAACAAGGCGGCATAATAAAGAAGATGGAACCTAGTTTGA
AACAAGGAGATAGTGGTCTTTCTAAAGTAGGCTTACAGCCTGCCTTACAGACAGGTGAGATTCCA
GGAAAATTATCTGGGTTGAAAGGTGATGTATCAGGAGATCATGAAGATGTCTCTCAACCACATAA
ATTTGACCCCTCTACTGATAGGGCATTGAAAGCTCCAAACACAAGAAATACTGACTTACCTGAGA
GAGAGGAGTCTAAAGATGGTGAACAAATTGTTGCTAATCAAAATCAAGTGGAAGCTTCGGTTGAT
CAAGTTGTGGATAACAGGGAACAGGTAGATAAATTTGCTTCTGGGTCACAAACTGATACTGTGAT
TCCCTCTGTGCAAAACACCTGTGCCAG
Found at i:122146942 original size:73 final size:73
Alignment explanation
Indices: 122146855--122147000 Score: 274
Period size: 73 Copynumber: 2.0 Consensus size: 73
122146845 ATTTATGGGT
122146855 GAAGGAAAAATATGTTCACACCCATTATTTAAAACAATTCTTTGGTTTTAAAAGATGTAAATTTG
1 GAAGGAAAAATATGTTCACACCCATTATTTAAAACAATTCTTTGGTTTTAAAAGATGTAAATTTG
122146920 TAATTTTA
66 TAATTTTA
*
122146928 GAAGGAAAAATATGTTCACACCCATTATTTAAAACAATTCTTTGGTTTTTAAAGATGTAAATTTG
1 GAAGGAAAAATATGTTCACACCCATTATTTAAAACAATTCTTTGGTTTTAAAAGATGTAAATTTG
*
122146993 TCATTTTA
66 TAATTTTA
122147001 CTCTTATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.39
Consensus pattern (73 bp):
GAAGGAAAAATATGTTCACACCCATTATTTAAAACAATTCTTTGGTTTTAAAAGATGTAAATTTG
TAATTTTA
Found at i:122149695 original size:27 final size:27
Alignment explanation
Indices: 122149665--122149724 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
122149655 TATAAATATT
*
122149665 ATATTTAT-AATTTGATATATCA-TTAAA
1 ATATTTATAAATTT-AAAT-TCATTTAAA
122149692 ATATTT-TAAATTTAAATTCATTTAAA
1 ATATTTATAAATTTAAATTCATTTAAA
122149718 ATATTTA
1 ATATTTA
122149725 GGTCGGGATC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 3 0.10
26 15 0.52
27 11 0.38
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (27 bp):
ATATTTATAAATTTAAATTCATTTAAA
Found at i:122153277 original size:47 final size:47
Alignment explanation
Indices: 122153216--122153412 Score: 349
Period size: 47 Copynumber: 4.2 Consensus size: 47
122153206 TTTTATCATG
* * *
122153216 AGAGTCCTACCTAACTTCTCCAAAAAATAAAAAAAAAACTTTTATTA
1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
122153263 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
*
122153310 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAACAACTTTTATTA
1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
*
122153357 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAACAACTTTTATTA
1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
122153404 AGAGTCCTA
1 AGAGTCCTA
122153413 CATCTACAAC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (47 bp):
AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
Found at i:122159631 original size:17 final size:19
Alignment explanation
Indices: 122159605--122159639 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
122159595 TAATGGAAGT
122159605 AAAATAATATT-TTTTATA
1 AAAATAATATTATTTTATA
122159623 AAAAT-ATATTATTTTAT
1 AAAATAATATTATTTTAT
122159640 TATTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAAATAATATTATTTTATA
Found at i:122159748 original size:16 final size:17
Alignment explanation
Indices: 122159727--122159768 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
122159717 AACTTTTATG
122159727 TAATTAATTTAAAATAA
1 TAATTAATTTAAAATAA
*
122159744 T-ATTATTTTAAAATAA
1 TAATTAATTTAAAATAA
122159760 TAATTAATT
1 TAATTAATT
122159769 ATTATATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATTAATTTAAAATAA
Done.