Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 424 of 427
Found at i:123519917 original size:18 final size:17
Alignment explanation
Indices: 123519878--123519916 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
123519868 CCTAAAGGTG
*
123519878 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
123519895 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
123519912 ATTTT
1 ATTTT
123519917 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:123520170 original size:29 final size:29
Alignment explanation
Indices: 123520114--123520170 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
123520104 TCTCTTTTTT
* *
123520114 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
123520143 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
123520171 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:123520427 original size:11 final size:11
Alignment explanation
Indices: 123520409--123520438 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
123520399 GTGTATATTG
123520409 TATATATTATA
1 TATATATTATA
*
123520420 TTTATATTATA
1 TATATATTATA
123520431 TATATATT
1 TATATATT
123520439 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:123522392 original size:30 final size:30
Alignment explanation
Indices: 123522350--123522409 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
123522340 TTATGTACTT
123522350 ATTTTTATAATTAA-G-AATTTATAATGTCTA
1 ATTTTTATAATTAATGTAATTT-TAAT-TCTA
123522380 ATTTTT-TCAATTAATGTAATTTTAATTCTA
1 ATTTTTAT-AATTAATGTAATTTTAATTCTA
123522410 TGAACTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
29 1 0.04
30 16 0.59
31 5 0.19
32 5 0.19
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (30 bp):
ATTTTTATAATTAATGTAATTTTAATTCTA
Found at i:123526048 original size:17 final size:18
Alignment explanation
Indices: 123526021--123526055 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
123526011 GGTGCTAATA
*
123526021 AAATGTAAAATTTAAATT
1 AAATGTAAAATTAAAATT
123526039 AAAT-TAAAATTAAAATT
1 AAATGTAAAATTAAAATT
123526056 GTATATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
AAATGTAAAATTAAAATT
Found at i:123526398 original size:20 final size:20
Alignment explanation
Indices: 123526350--123526387 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
123526340 TTAATTTAAT
*
123526350 TAAAATTAGTAATTAATTGA
1 TAAAATTAATAATTAATTGA
123526370 TAAAATTAATAATTAATT
1 TAAAATTAATAATTAATT
123526388 TTTATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
TAAAATTAATAATTAATTGA
Found at i:123528021 original size:23 final size:23
Alignment explanation
Indices: 123527967--123528021 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
123527957 AAATTTAATC
*
123527967 TTTATTGTTTATATTTTTTGTTAA
1 TTTATT-TTTATATTTTTAGTTAA
123527991 TTTAATTTTTAT-TTTTTAGTTAAA
1 TTT-ATTTTTATATTTTTAGTT-AA
123528015 TTTATTT
1 TTTATTT
123528022 CTCAATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 12 0.43
24 13 0.46
25 3 0.11
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (23 bp):
TTTATTTTTATATTTTTAGTTAA
Found at i:123528240 original size:16 final size:16
Alignment explanation
Indices: 123528213--123528253 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
123528203 ATTCCTTTTC
123528213 TTTAATTTTTATGAATT
1 TTTAA-TTTTATGAATT
* *
123528230 TTTTATTTTATTAATT
1 TTTAATTTTATGAATT
123528246 TTTAATTT
1 TTTAATTT
123528254 ATTTGTTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTAATTTTATGAATT
Found at i:123529028 original size:19 final size:18
Alignment explanation
Indices: 123529001--123529036 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
123528991 TAATAAATTA
123529001 TTTAATATTTAAATTTTAT
1 TTTAATA-TTAAATTTTAT
*
123529020 TTTATTATTAAATTTTA
1 TTTAATATTAAATTTTA
123529037 AAAAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTAATATTAAATTTTAT
Found at i:123531025 original size:61 final size:61
Alignment explanation
Indices: 123530933--123531058 Score: 162
Period size: 61 Copynumber: 2.1 Consensus size: 61
123530923 ATTTTCTTAA
* * * * *
123530933 TTTTTAGAGTTAGGACTAAATTGATAGATTTTATAAATATTGAGGGCCAAAATTATTGAAT
1 TTTTTAGAATTAGAACTAAAATGATAAATTTTATAAACATTGAGGGCCAAAATTATTGAAT
* * ** *
123530994 TTTTTAGAATTAGAACTAAAATGATAAATTTTGTAAACATTGAGGGCTAAGTTTGTTGAAT
1 TTTTTAGAATTAGAACTAAAATGATAAATTTTATAAACATTGAGGGCCAAAATTATTGAAT
123531055 TTTT
1 TTTT
123531059 ATATTTAGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (61 bp):
TTTTTAGAATTAGAACTAAAATGATAAATTTTATAAACATTGAGGGCCAAAATTATTGAAT
Found at i:123534361 original size:6 final size:7
Alignment explanation
Indices: 123534341--123534379 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
123534331 TTTCAGCTTG
123534341 TTCTTTT
1 TTCTTTT
123534348 TTCTTTT
1 TTCTTTT
123534355 TTCTTTT
1 TTCTTTT
*
123534362 TTGTGTTT
1 TTCT-TTT
123534370 TTCTTTT
1 TTCTTTT
123534377 TTC
1 TTC
123534380 CAATTTCGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (7 bp):
TTCTTTT
Found at i:123534370 original size:15 final size:14
Alignment explanation
Indices: 123534341--123534379 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
123534331 TTTCAGCTTG
123534341 TTCTTTTTTCTTTT
1 TTCTTTTTTCTTTT
*
123534355 TTCTTTTTTGTGTTT
1 TTCTTTTTTCT-TTT
123534370 TTCTTTTTTC
1 TTCTTTTTTC
123534380 CAATTTCGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (14 bp):
TTCTTTTTTCTTTT
Found at i:123539696 original size:12 final size:12
Alignment explanation
Indices: 123539679--123539709 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
123539669 ATTCATTTGA
123539679 CATTCATGCATT
1 CATTCATGCATT
123539691 CATTCATGCATT
1 CATTCATGCATT
123539703 CATTCAT
1 CATTCAT
123539710 ACATCGGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:123546715 original size:71 final size:68
Alignment explanation
Indices: 123546617--123546789 Score: 215
Period size: 71 Copynumber: 2.5 Consensus size: 68
123546607 CTTTTCAAGG
* *
123546617 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTC-AGACACGCTGAGGTATTTTTAATTTAT
123546681 GTTTT
64 GTTTT
* * *
123546686 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTTAGTTTAT
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTAATTTAT
123546751 GTTTT
64 GTTTT
** * *
123546756 AAATTGACTCATATTG-GAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
123546790 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
67 16 0.17
68 14 0.15
70 27 0.29
71 33 0.36
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (68 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTAATTTATGT
TTT
Found at i:123546910 original size:72 final size:71
Alignment explanation
Indices: 123546789--123546954 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
123546779 GAGTTAAGCC
** * *
123546789 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
123546853 TGAGGTA
65 TGAGGTA
*
123546860 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
123546925 TGAGGTA
65 TGAGGTA
* *
123546932 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
123546955 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:123547050 original size:139 final size:140
Alignment explanation
Indices: 123546887--123547230 Score: 656
Period size: 139 Copynumber: 2.5 Consensus size: 140
123546877 TTAATTTCAA
123546887 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
123546952 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGA-GTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
123547016 TCAAAATCAG
131 TCAAAATCAG
123547026 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
123547091 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
123547156 TCAAAATCAG
131 TCAAAATCAG
123547166 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACGCTGAGGTATTTTCAATTTCTGTCTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGT-TTTCA
123547230 A
65 A
123547231 AAAAAAATTC
Statistics
Matches: 202, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
139 128 0.63
140 74 0.37
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:123547089 original size:13 final size:13
Alignment explanation
Indices: 123547071--123547104 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
123547061 CGCTGAGGTA
*
123547071 TTTTCAATTTCTG
1 TTTTCAATTTATG
123547084 TTTTCAATTTATG
1 TTTTCAATTTATG
123547097 TTGTTCAA
1 TT-TTCAA
123547105 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:123547355 original size:71 final size:72
Alignment explanation
Indices: 123547153--123547372 Score: 295
Period size: 71 Copynumber: 3.0 Consensus size: 72
123547143 AATTTCTACT
* ** * * *
123547153 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACGCTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
123547216 ATTTCTG
66 ATTTCTG
*
123547223 TCTTTCAAAAAAAAATTCAACTCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTA
1 T-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
123547287 ATTTCAATTTCTG
60 ATTTCAATTTCTG
123547300 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
123547364 ATTTCTG
66 ATTTCTG
123547371 TT
1 TT
123547373 CAAAATGAGT
Statistics
Matches: 134, Mismatches: 7, Indels: 17
0.85 0.04 0.11
Matches are distributed among these distances:
70 1 0.01
71 48 0.36
72 23 0.17
76 21 0.16
77 41 0.31
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:123547383 original size:48 final size:49
Alignment explanation
Indices: 123547327--123547421 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 49
123547317 ATATTGCGAG
123547327 AAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
123547375 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
123547422 TTCAAAATCA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 24 0.52
49 22 0.48
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:123547475 original size:120 final size:120
Alignment explanation
Indices: 123547256--123547492 Score: 422
Period size: 120 Copynumber: 2.0 Consensus size: 120
123547246 ATATTGCGAG
*
123547256 AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
1 AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
123547321 TGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTAATTTCAATTTCTGTTCAA
66 TGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTAATTTCAATTTCTGTTCAA
123547376 AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAA-TCAACTCATAT
1 AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
* * *
123547440 TGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCAATTTCTGTT
123547493 TTTAAAAAAA
Statistics
Matches: 112, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
119 39 0.35
120 73 0.65
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (120 bp):
AATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
TGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTAATTTCAATTTCTGTTCAA
Found at i:123547603 original size:72 final size:74
Alignment explanation
Indices: 123547375--123547645 Score: 345
Period size: 71 Copynumber: 3.7 Consensus size: 74
123547365 TTTCTGTTCA
*
123547375 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC---AAAATCAACTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
123547437 TATTGCGAG
66 TATTGCGAG
* * *
123547446 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG-TTTT--CAAAAAAATCAAC
*
123547511 TCATATTGTGAG
63 TCATATTGCGAG
* *
123547523 AAATGAGTTGAGCCTC-AGACATGCTGAGGTA-TTTCAATTTCTGTTGTCAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
123547586 TATTGCGAG
66 TATTGCGAG
*** * * *
123547595 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTT
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTT
123547646 TCAATTTCTG
Statistics
Matches: 173, Mismatches: 17, Indels: 15
0.84 0.08 0.07
Matches are distributed among these distances:
71 42 0.24
72 40 0.23
73 1 0.01
74 3 0.02
75 23 0.13
76 29 0.17
77 35 0.20
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (74 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
TATTGCGAG
Found at i:123547750 original size:165 final size:165
Alignment explanation
Indices: 123547478--123547797 Score: 439
Period size: 165 Copynumber: 1.9 Consensus size: 165
123547468 TGCTGAGGTA
** *
123547478 TTTTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGAC
1 TTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAC
* *
123547543 ATGCTGAGGTATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
66 ATGCCGAGCTATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
* *
123547608 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGT
131 CTCAGATCACACACCGAGGTATTTTCAATTTCCGT
* ** * *
123547643 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAC
* * *
123547707 -T-CACGCGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
66 ATGC-CGAGCTA-TTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTG
* *
123547770 AGCTTCAGATCACACACTGAGGTATTTT
128 AGCCTCAGATCACACACCGAGGTATTTT
123547798 TTCAATTTAT
Statistics
Matches: 135, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
162 1 0.01
163 5 0.04
164 15 0.11
165 114 0.84
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (165 bp):
TTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAC
ATGCCGAGCTATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
CTCAGATCACACACCGAGGTATTTTCAATTTCCGT
Found at i:123547965 original size:88 final size:89
Alignment explanation
Indices: 123547810--123547978 Score: 243
Period size: 88 Copynumber: 1.9 Consensus size: 89
123547800 CAATTTATAT
* * *
123547810 TTTTCAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
1 TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTT
123547875 TCAAAATCTGTTTTTTAGATTCTG
66 TCAAAATCTGTTTTTTAGATTCTG
* * *
123547899 TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATT
1 TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATT
**
123547962 TTCAATTTCTGTTTTTT
65 TTCAAAATCTGTTTTTT
123547979 TTTCAAAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
87 1 0.01
88 65 0.92
89 5 0.07
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (89 bp):
TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTT
TCAAAATCTGTTTTTTAGATTCTG
Found at i:123548039 original size:30 final size:30
Alignment explanation
Indices: 123548003--123548064 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
123547993 CAACTCATGT
123548003 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
123548033 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
123548063 TG
1 TG
123548065 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:123548103 original size:255 final size:246
Alignment explanation
Indices: 123547408--123548232 Score: 815
Period size: 255 Copynumber: 3.4 Consensus size: 246
123547398 GCTGAGGTAA
* ** * ** *
123547408 TTTCAATTTCTGTTTTC--AAAATCAACTCATATTGCGAGAAATTAGTTGAGCC-T--CAAGACA
1 TTTCAAGTTCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACG
* *** * **
123547468 TGCTGAGGTATTTTCAATTTCTG-TTTT-TAAAAAAAAAATCAACTCATATTGTGAGAAATGAGT
64 TGCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* ** * * *
123547531 TGAGCCTCAG---ACATGCTGAGGTA---TTTCAATTTCT-GTTGTCAAAAAAATCAACTCATAT
129 TGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCATAT
* * * ** *
123547589 TGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
193 TGCGAGAGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTT
*
123547644 TTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTCAAGTTCTG--TTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
123547709 AC--GC---GCTATTTTCAATTTCTG----TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
61 ACGTGCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
* *
123547765 AGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAATCAACTCAC
126 AGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCAT
*
123547830 ATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTT
191 ATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTT
* *
123547887 TTT-TAGATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTCAAG-TTCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* *
123547950 TGCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAAACTTCAACTCATGTTGCGAGAGGTGA
64 TGCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAA--TCAACTCATATTGCGAGAGGTGA
* * * * * * *
123548015 GTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAAT
127 GTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAAT
* * * *
123548077 CAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCT
183 CAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTT
**
123548142 TTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTG
1 TTTCAAGTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTG
123548207 CTGAGCTATTTTCAATTTCTGTTTTT
66 CTGAGCTATTTTCAATTTCTGTTTTT
123548233 AATGTCTGTT
Statistics
Matches: 496, Mismatches: 52, Indels: 63
0.81 0.09 0.10
Matches are distributed among these distances:
236 13 0.03
237 43 0.09
238 44 0.09
239 16 0.03
240 13 0.03
242 39 0.08
243 99 0.20
244 6 0.01
245 1 0.00
247 12 0.02
249 29 0.06
250 1 0.00
251 3 0.01
252 2 0.00
253 1 0.00
254 6 0.01
255 146 0.29
256 17 0.03
257 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (246 bp):
TTTCAAGTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTG
CTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTCGGTCACATGTCGAGGTATTTTCAAAATCTGTT
Found at i:123548948 original size:29 final size:29
Alignment explanation
Indices: 123548886--123548950 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
123548876 ATTAAGCCCC
123548886 CCAA-AAAAAACCTAACCCCAAAAAAAAA
1 CCAAGAAAAAACCTAACCCCAAAAAAAAA
** **
123548914 AAAAGAAAAAACCTAACCCCCCAAAAAAA
1 CCAAGAAAAAACCTAACCCCAAAAAAAAA
123548943 CCAAGAAA
1 CCAAGAAA
123548951 CCCTAGCCAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.07
29 28 0.93
ACGTcount: A:0.66, C:0.28, G:0.03, T:0.03
Consensus pattern (29 bp):
CCAAGAAAAAACCTAACCCCAAAAAAAAA
Found at i:123554293 original size:24 final size:22
Alignment explanation
Indices: 123554266--123554323 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
123554256 CATTATTTTT
*
123554266 TATTATTATTTTCTTTATTGTGAA
1 TATTATTATTTT-TTTATTCT-AA
*
123554290 TATTATTGTTATTTTTATTCTAA
1 TATTATTATT-TTTTTATTCTAA
123554313 TATTA-TATTTT
1 TATTATTATTTT
123554324 AATATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 2 0.07
22 3 0.10
23 7 0.23
24 16 0.53
25 2 0.07
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (22 bp):
TATTATTATTTTTTTATTCTAA
Found at i:123558338 original size:118 final size:118
Alignment explanation
Indices: 123558178--123558408 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
123558168 TATTTCCGGT
123558178 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
123558243 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
123558296 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
123558361 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
123558409 ATGGAAAACA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:123559341 original size:6 final size:6
Alignment explanation
Indices: 123559327--123559390 Score: 96
Period size: 6 Copynumber: 10.7 Consensus size: 6
123559317 AATATTAACT
123559327 AAAAT- AAAATA AAAATA AAAGA-A AATAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAA-ATA AA-AATA AAAATA AAAATA AAAATA
123559375 AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAA
123559391 GAAAGATTGG
Statistics
Matches: 55, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.09
6 45 0.82
7 5 0.09
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:123565404 original size:46 final size:46
Alignment explanation
Indices: 123565354--123565527 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
123565344 GTTGAGCATC
123565354 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
* * * *
123565400 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TT
* *
123565447 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
* *
123565493 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
123565528 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
Found at i:123565508 original size:93 final size:93
Alignment explanation
Indices: 123565349--123565520 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
123565339 GGATGGTTGA
* *
123565349 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAGT
123565414 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
123565442 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAGT
123565507 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
123565521 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:123572714 original size:46 final size:46
Alignment explanation
Indices: 123572664--123572839 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
123572654 TGGTTGAGCA
123572664 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
123572710 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
123572755 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
123572803 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
123572840 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:123572820 original size:93 final size:93
Alignment explanation
Indices: 123572661--123572832 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
123572651 GGATGGTTGA
* *
123572661 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
123572726 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
123572754 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
123572819 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
123572833 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:123576172 original size:20 final size:20
Alignment explanation
Indices: 123576147--123576194 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
123576137 AGACATAAAT
123576147 AGCTCAAATTAGTAGGCTCA
1 AGCTCAAATTAGTAGGCTCA
123576167 AGCTCAAATTAGTAGGCTCA
1 AGCTCAAATTAGTAGGCTCA
123576187 AGCTCAAA
1 AGCTCAAA
123576195 ATAAACACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (20 bp):
AGCTCAAATTAGTAGGCTCA
Found at i:123576707 original size:41 final size:41
Alignment explanation
Indices: 123576641--123576719 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
123576631 CAGCGTTGGC
*
123576641 TATTGCTAGGGTGAGAAGATCAGAGTTATTTAAAGTTTATT
1 TATTACTAGGGTGAGAAGATCAGAGTTATTTAAAGTTTATT
*
123576682 TATTACTAGGGTGAGAAGATTAGAGTTATTTAAAGTTT
1 TATTACTAGGGTGAGAAGATCAGAGTTATTTAAAGTTT
123576720 GGTGGTGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (41 bp):
TATTACTAGGGTGAGAAGATCAGAGTTATTTAAAGTTTATT
Found at i:123580075 original size:23 final size:23
Alignment explanation
Indices: 123580042--123580099 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
123580032 AATATAGTCC
123580042 TTTT-TTAATTAATCAACCATT-T
1 TTTTATTAATTAATCAA-CATTAT
*
123580064 TTTTATTAATTAATCAACTTTAT
1 TTTTATTAATTAATCAACATTAT
123580087 TTTTATT-ATTAAT
1 TTTTATTAATTAAT
123580100 TCTATTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
22 13 0.39
23 20 0.61
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTATTAATTAATCAACATTAT
Found at i:123580131 original size:25 final size:23
Alignment explanation
Indices: 123580089--123580141 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
123580079 AACTTTATTT
*
123580089 TTATTATTAATTCTATTATTACTA
1 TTATTATTAATTCCATTATT-CTA
123580113 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
123580137 TTATT
1 TTATT
123580142 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:123581032 original size:2 final size:2
Alignment explanation
Indices: 123581025--123581056 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
123581015 CTTTGAATTT
123581025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
123581057 CATGTATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:123582889 original size:75 final size:74
Alignment explanation
Indices: 123582768--123582939 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
123582758 TCCATGGCAA
** *
123582768 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
123582828 T-CCATACTG
65 TCCCATACCG
123582837 AGCTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
1 AG-TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
123582902 TCCCATACCG
65 TCCCATACCG
*
123582912 AGT-TAAAAATGTAGGTATGGTATT-TCAA
1 AGTGT-GAAATGTAGGTATGGTATTATCAA
123582940 TGAGGAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 2 0.02
70 18 0.20
73 9 0.10
74 20 0.22
75 41 0.46
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:123582908 original size:35 final size:35
Alignment explanation
Indices: 123582773--123582937 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
123582763 GGCAAAGTGT
* **
123582773 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
123582808 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
123582843 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
123582883 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
123582918 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
123582938 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
34 19 0.16
35 66 0.57
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:123590385 original size:75 final size:75
Alignment explanation
Indices: 123590266--123590436 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
123590256 CATGGCAAAG
** *
123590266 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
123590325 CCATACTGAGC
65 CCATACCGAGC
123590336 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
123590401 CATACCGAGT
66 CATACCGAGC
***
123590411 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
123590437 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:123590404 original size:35 final size:35
Alignment explanation
Indices: 123590269--123590434 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
123590259 GGCAAAGTGT
* **
123590269 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
123590304 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
123590339 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
123590379 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
123590414 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
123590435 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:123598302 original size:16 final size:15
Alignment explanation
Indices: 123598276--123598310 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
123598266 TGATGTGAAT
123598276 AATATAAAATATTAA
1 AATATAAAATATTAA
*
123598291 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
123598307 AATA
1 AATA
123598311 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:123598494 original size:24 final size:23
Alignment explanation
Indices: 123598465--123598534 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
123598455 ACGTGATAAT
*
123598465 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
123598488 GTGTAAAAATACATACATAATATA
1 AT-TAAAAATATATACATAATATA
*
123598512 ATT-AAAATATATACATAAGATA
1 ATTAAAAATATATACATAATATA
123598534 A
1 A
123598535 CATGTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.45
23 2 0.05
24 20 0.50
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:123598659 original size:24 final size:23
Alignment explanation
Indices: 123598632--123598683 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
123598622 AGAATATACC
*
123598632 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
123598656 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
123598679 TAATA
1 TAATA
123598684 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:123598893 original size:18 final size:18
Alignment explanation
Indices: 123598870--123598921 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
123598860 GTGGAGTAGG
123598870 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
123598888 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
123598900 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
123598918 TAGT
1 TAGT
123598922 AGAATTGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
12 3 0.12
13 4 0.15
14 4 0.15
16 4 0.15
17 4 0.15
18 7 0.27
ACGTcount: A:0.19, C:0.08, G:0.46, T:0.27
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:123598930 original size:30 final size:30
Alignment explanation
Indices: 123598854--123598935 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
123598844 CGGGTAAAAA
* *
123598854 TGGCTAGTGGAGTAGGTAGTGGAGCAAGTG
1 TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
123598884 TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
1 TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
* *
123598914 TGGCTAGTAGAATTGGTGGTGG
1 TGGCTAGTGGAGTTGGTGGTGG
123598936 CAAAGGCTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.20, C:0.06, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
Found at i:123600669 original size:59 final size:59
Alignment explanation
Indices: 123600591--123600730 Score: 262
Period size: 59 Copynumber: 2.4 Consensus size: 59
123600581 ATTAGGGTTT
*
123600591 GAATTTAGCTTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
1 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
*
123600650 GAATTTAGCCTGGAGTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
1 GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
123600709 GAATTTAGCCTGGACTGGTAAT
1 GAATTTAGCCTGGACTGGTAAT
123600731 CCCGACAATA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 78 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (59 bp):
GAATTTAGCCTGGACTGGTAATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGG
Found at i:123601071 original size:12 final size:12
Alignment explanation
Indices: 123601049--123601076 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
123601039 ATTGAATGGA
123601049 TATTTGAATGTT
1 TATTTGAATGTT
123601061 TATTTGAATGTT
1 TATTTGAATGTT
123601073 TATT
1 TATT
123601077 GCATTGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (12 bp):
TATTTGAATGTT
Found at i:123601394 original size:14 final size:14
Alignment explanation
Indices: 123601375--123601404 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
123601365 TATCTTATAA
123601375 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
123601389 ATATGCGTTAATCT
1 ATATGCGTGAATCT
123601403 AT
1 AT
123601405 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:123602481 original size:20 final size:22
Alignment explanation
Indices: 123602438--123602483 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
123602428 AGTTTTAGGG
**
123602438 TTAATTTAATTAAAATTAGTAA
1 TTAATTTAATTAAAATTAACAA
123602460 TTAA-TTAA-TAAAATTAACAA
1 TTAATTTAATTAAAATTAACAA
123602480 TTAA
1 TTAA
123602484 ATTTTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 4 0.18
22 4 0.18
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
TTAATTTAATTAAAATTAACAA
Found at i:123608889 original size:44 final size:45
Alignment explanation
Indices: 123608839--123608938 Score: 121
Period size: 44 Copynumber: 2.2 Consensus size: 45
123608829 CTTTGACATA
* * * *
123608839 GACTTACATGAATTATTCCTGTCTCCTATGCCATA-TATAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAATATG
** *
123608883 GACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAATATG
123608929 GACTTACATG
1 GACTTACATG
123608939 GCTCATTTCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 29 0.62
46 18 0.38
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (45 bp):
GACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAATATG
Found at i:123608938 original size:46 final size:44
Alignment explanation
Indices: 123608855--123608943 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
123608845 CATGAATTAT
* *
123608855 TCCTGTCTCCTATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAA
*
123608899 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
123608944 TTTCGTTCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 17 0.43
46 23 0.57
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAA
Found at i:123618555 original size:72 final size:71
Alignment explanation
Indices: 123618413--123618601 Score: 177
Period size: 72 Copynumber: 2.6 Consensus size: 71
123618403 GAGTTAAGCC
** * *
123618413 TTTT-AATTTTTGTTTTTCAAAATT-AACTCATATTGTTAGAGGTGAGTTGAGCCTTGGGGCACG
1 TTTTCAATTTTTGTTTTT--AAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTTAGGACACG
* *
123618476 CTGAGGTA
64 ATAAGGTA
* * *
123618484 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTTAGTTGAG-CTTCAGGACACG
1 TTTTCAATTTTTGT-TTTTAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTT-AGGACACG
123618548 ATAAGGTA
64 ATAAGGTA
* * * * *
123618556 ATCTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCAAGAGGTG
1 TTTTCAATTTTTGTTT-TTAA-ATTCAACTCATATTGCAAGAGGTG
123618602 GGTTAAACCT
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
71 13 0.14
72 59 0.61
73 24 0.25
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTTAGGACACGAT
AAGGTA
Found at i:123618792 original size:88 final size:88
Alignment explanation
Indices: 123618637--123618964 Score: 457
Period size: 88 Copynumber: 3.7 Consensus size: 88
123618627 TTAAAATTAG
123618637 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTCTTT-A
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT-TTTCA
*
123618701 TTATTATGTTTTTGAAAGAATCAG
65 TTATTATGTTTTTGAAAGAATCAA
*
123618725 CTCTTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTTTTCAT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTTTTCAT
*
123618790 TATTATGATTTTGAAAGAATCAA
66 TATTATGTTTTTGAAAGAATCAA
* *
123618813 CTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCTG-TTTT
** *
123618878 CAATT-TT-TGTCTTTCAAAAAAAAATCAA
63 C-ATTATTATGT-TTT--TGAAAGAATCAA
* * *
123618906 CTCATATTGCGAGAGGTGAGTTGAGCCT-AGGACACGCTGAGGTAATTTCAATTTCTGTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTT
123618965 GTCAAAAAAA
Statistics
Matches: 218, Mismatches: 14, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
87 3 0.01
88 113 0.52
89 2 0.01
90 48 0.22
91 10 0.05
92 6 0.03
93 36 0.17
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (88 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGTTTTCAT
TATTATGTTTTTGAAAGAATCAA
Found at i:123619030 original size:75 final size:73
Alignment explanation
Indices: 123618895--123619035 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 73
123618885 TGTCTTTCAA
*
123618895 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACGCCGAGGTAATTTCAATTT
123618960 CTGTTGTC
66 CTGTTGTC
* * *
123618968 AAAAAAATCAACTCGTATTGCGAGTGG-GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGG--ACACGCCGAGGTAATTTCAA
123619032 TTTC
63 TTTC
123619036 CGTTTTTCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 11 0.18
73 28 0.46
75 22 0.36
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (73 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACGCCGAGGTAATTTCAATTT
CTGTTGTC
Found at i:123619120 original size:90 final size:88
Alignment explanation
Indices: 123618951--123619125 Score: 255
Period size: 91 Copynumber: 2.0 Consensus size: 88
123618941 GCTGAGGTAA
* *
123618951 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGGAGTTGAGCCTCAGGTCACAC
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGGAGTTGAGCCTCAGG-CACAC
*
123619016 GCCGAGGTATTTTCAATTTCCGTT
65 GCCGAGGTAATTTCAATTTCCGTT
123619040 TTTCAATTTCTGGCTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCT-G-TTGTC-AAAAAAATCAACTCATATTGCGAGAGG-GAGTTGAGCCTCAGGCA
*
123619103 CACGCTGAGGTAATTTCAATTTC
62 CACGCCGAGGTAATTTCAATTTC
123619126 TGTTGTCAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
89 11 0.14
90 25 0.32
91 27 0.35
92 15 0.19
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (88 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGGAGTTGAGCCTCAGGCACACG
CCGAGGTAATTTCAATTTCCGTT
Found at i:123619165 original size:74 final size:75
Alignment explanation
Indices: 123619040--123619206 Score: 230
Period size: 74 Copynumber: 2.2 Consensus size: 75
123619030 AATTTCCGTT
*
123619040 TTTCAATTTCTGGCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTCAATTTCT-G-TTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
*
123619104 ACGCTGAGGTAA
64 ACGCCGAGGTAA
* * *
123619116 TTTCAATTTCTGTTGTC-AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTT-TCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CAC
*
123619180 ACGCCGAGGTAT
64 ACGCCGAGGTAA
123619192 TTTCAATTTCTGTTT
1 TTTCAATTTCTGTTT
123619207 TTCAATTTCT
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
74 41 0.50
75 4 0.05
76 37 0.45
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (75 bp):
TTTCAATTTCTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACAC
GCCGAGGTAA
Found at i:123619198 original size:166 final size:165
Alignment explanation
Indices: 123618807--123619998 Score: 1297
Period size: 165 Copynumber: 7.2 Consensus size: 165
123618797 ATTTTGAAAG
*
123618807 AATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
123618872 GTTTTTCAATTTTTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AG
66 GTTTTTCAATTTCTGGCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
123618936 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
129 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
* *
123618973 AATCAACTCGTATTGCGAGTGG-GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
123619037 GTTTTTCAATTTCTGGCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 GTTTTTCAATTTCTGGCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
123619102 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
130 ACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
* * * * *
123619138 AGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * *
123619203 GTTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG
66 GTTTTTCAATTTCTGGCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
123619267 CTCACGCACTGAGCTATTTTCAATTTCTGTCTTTCAAAAA
130 -ACACG--CTGAGGTAATTTCAATTTCTGT-TTTCAAAAA
* *
123619307 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGATCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * *
123619372 ATTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGAT
66 GTTTTTCAATTTCTGGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--
* * * * *
123619437 CACACACTGAGGTATTTTTTTACTTCAATTTATATTTTTC--AAA
129 GACACGCTGAGGTA-------ATTTCAATTTCT-GTTTTCAAAAA
* * *
123619480 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGACGTATTTTTAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * * ** *
123619545 ATTTTTCAATTTCT-GTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
66 GTTTTTCAATTTCTGGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* *
123619607 CACGTTGAGGTATTTTCAATTTCTGTTTTC-AAAA
131 CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
* * *
123619641 AATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGA-G------C----T-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATTTC
* * *
123619693 -ATTTTT-AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
65 CGTTTTTCAATTTCTGGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
* * * * *
123619756 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAA
129 -GACACGCTGAGGTA--ATTTCAATTTCT-GTTTTCAAAAA
* * * * * ** *
123619797 AATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * * *
123619862 GTTTTTCAAATTCT-GTTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGC
66 GTTTTTCAATTTCTGGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * * *
123619923 TCACGTGCTGAGCTATTTTCAATTTCTATTTTTTTTTCAAAAA
130 ACAC--GCTGAGGTAATTTCAATTTC-----TGTTTTCAAAAA
123619966 AATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
123619999 TTTTTAATTT
Statistics
Matches: 886, Mismatches: 88, Indels: 100
0.82 0.08 0.09
Matches are distributed among these distances:
147 7 0.01
148 10 0.01
150 36 0.04
152 11 0.01
154 11 0.01
155 5 0.01
156 43 0.05
157 3 0.00
160 7 0.01
161 55 0.06
163 1 0.00
164 40 0.05
165 135 0.15
166 126 0.14
167 43 0.05
168 75 0.08
169 108 0.12
170 73 0.08
172 4 0.00
173 79 0.09
175 13 0.01
176 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (165 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTTCAATTTCTGGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
Found at i:123619210 original size:14 final size:14
Alignment explanation
Indices: 123619191--123619217 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
123619181 CGCCGAGGTA
123619191 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
123619205 TTTTCAATTTCTG
1 TTTTCAATTTCTG
123619218 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:123619223 original size:14 final size:14
Alignment explanation
Indices: 123619192--123619225 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
123619182 GCCGAGGTAT
**
123619192 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
123619206 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
123619220 TTTCAA
1 TTTCAA
123619226 AAAAAATCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:123619285 original size:92 final size:90
Alignment explanation
Indices: 123619116--123619303 Score: 229
Period size: 92 Copynumber: 2.1 Consensus size: 90
123619106 GCTGAGGTAA
* * *
123619116 TTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
123619181 CGCCGAGGTATTTTCAATTTCTGTT
66 CGCCGAGCTATTTTCAATTTCTGTC
* * *
123619206 TTTCAATTTCTGCCTT-TCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-C
1 TTTCAATTTCTG--TTGTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTC
*
123619268 TCACGCACTGAGCTATTTTCAATTTCTGTC
63 ACACGC-C-GAGCTATTTTCAATTTCTGTC
123619298 TTTCAA
1 TTTCAA
123619304 AAAAATCAAC
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
90 18 0.21
91 5 0.06
92 61 0.73
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
CGCCGAGCTATTTTCAATTTCTGTC
Found at i:123619362 original size:77 final size:77
Alignment explanation
Indices: 123619205--123619998 Score: 401
Period size: 77 Copynumber: 9.7 Consensus size: 77
123619195 CAATTTCTGT
* * ** *
123619205 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
* * *
123619270 ACGCACTGAGCTA
65 ACACGCTGAGGTA
*
123619283 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
123619348 CACGCCGAGGTA
66 CACGCTGAGGTA
* ** * * *
123619360 TTTTCAATTTCCATTTTTCAATTTCTGTCTTTCAAAAA--AA-TCA-ACT-C-ATATTGCGAGAG
1 TTTTCAATTT-C---TGTC----T-T-TC--AAAAAAATCAACTCATATTGCGAGA--G-GTGAG
* * * *
123619419 GTGAG-TTGAGCATCAGATCACACACTGAGGTA
51 TTGAGCCT---CA-GA--TCACACGCTGAGGTA
* * *
123619451 TTTTTTTACTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 -----TT--TTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
123619514 CAGATCACACGCCGACGTA
59 CAGATCACACGCTGAGGTA
* * ** * **
123619533 TTTTTAATTTCCATTTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
1 TTTTCAATTT-C---TGTC--TTTC-----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
123619598 GCCTCA-A-GACACGTTGAGGTA
55 GCCTCAGATCACACGCTGAGGTA
* ** *
123619619 TTTTCAATTTCTGT-TTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
123619682 CACGCTGAGCTA
66 CACGCTGAGGTA
* *
123619694 TTTTTAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
123619759 CACACTGAGGTA
66 CACGCTGAGGTA
* * * * * * *
123619771 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
*
123619836 CACATG-TCGAGGTA
64 CACACGCT-GAGGTA
** * *
123619850 TTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTCTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * ** *
123619915 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTCAGATCACACGCTGAGGTA
* *
123619938 TTTTCAATTTCTATTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTC----TGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
123619999 TTTTTAATTT
Statistics
Matches: 554, Mismatches: 90, Indels: 140
0.71 0.11 0.18
Matches are distributed among these distances:
73 33 0.06
75 31 0.06
76 4 0.01
77 126 0.23
78 22 0.04
79 70 0.13
81 12 0.02
82 43 0.08
83 2 0.00
84 7 0.01
85 8 0.01
86 33 0.06
87 16 0.03
88 101 0.18
89 9 0.02
90 3 0.01
91 15 0.03
92 7 0.01
94 2 0.00
96 2 0.00
98 8 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CACGCTGAGGTA
Found at i:123619436 original size:91 final size:89
Alignment explanation
Indices: 123619283--123619629 Score: 444
Period size: 91 Copynumber: 4.0 Consensus size: 89
123619273 CACTGAGCTA
*
123619283 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
123619348 CACGCCGAGGTATTTTCAATTTCCAT
64 CACGCCGAGGTATTTTCAATTTCCAT
*
123619374 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
123619439 CACACTGAGGTATTTT---TTT--A-
64 CACGCCGAGGTATTTTCAATTTCCAT
* * * *
123619459 -CTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
1 TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
* *
123619523 CGCCGACGTATTTTTAATTTCCAT
66 CGCCGAGGTATTTTCAATTTCCAT
* ** *
123619547 TTTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACA
1 TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
**
123619609 CGTTGAGGTATTTTCAATTTC
66 CGCCGAGGTATTTTCAATTTC
123619630 TGTTTTCAAA
Statistics
Matches: 226, Mismatches: 23, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
82 56 0.25
84 14 0.06
85 3 0.01
86 21 0.09
87 2 0.01
88 43 0.19
89 10 0.04
91 77 0.34
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (89 bp):
TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCCGAGGTATTTTCAATTTCCAT
Found at i:123619869 original size:14 final size:13
Alignment explanation
Indices: 123619850--123619885 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
123619840 TGTCGAGGTA
123619850 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
123619863 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
123619877 TTTTCAAAA
1 TTTTCAAAA
123619886 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:123619955 original size:88 final size:88
Alignment explanation
Indices: 123619794--123619955 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
123619784 TATTTTTCAA
* * *
123619794 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
*
123619859 TCTGTTTTTCAAATTCTGTTTTC
66 TCTATTTTTCAAATTCTGTTTTC
* * * *
123619882 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
123619946 TTCTATTTTT
65 ATCTATTTTT
123619956 TTTTCAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.02
88 63 0.98
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTATTTTTCAAATTCTGTTTTC
Found at i:123620016 original size:30 final size:30
Alignment explanation
Indices: 123619980--123620040 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
123619970 CAACTCATAT
123619980 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
123620010 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
123620040 T
1 T
123620041 ATTTTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:123620049 original size:411 final size:396
Alignment explanation
Indices: 123618873--123620080 Score: 1035
Period size: 411 Copynumber: 2.9 Consensus size: 396
123618863 TCAATTTCCG
* *
123618873 TTTTTCAATTTTTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AG-
1 TTTTT-AATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* * * * * * *
123618936 -GACACGCTGAGGTA--ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAG-TGGGA
63 TCACACGCTGAGGTATTTTTTCAATTTATTTTTTCAAAAAAATCAACTCATATTGCGAGATGTGA
* * * *
123618997 GTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGGCTTTCAAAA
128 GTTGAGCCTCAGGTCACA-GACGAGGTATTTTCAA--TCTGTTTTTCAATTTCTAGTTTTC---A
* * *
123619062 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC-
187 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACGCTGAGCTATTTTCAATTTCA
* * * * * * * *
123619126 ---TGTTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAG
251 TTTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA----A-TCGACGA-
* * * * * *
123619188 GTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGT
310 G-A-GTT-GAGTT-AGTTTTT-AATTTCT-CTTTTC--AAAAAATCAACTCATATTGCGAGAGGT
*
123619253 GAGTTGAGCCTTGGCTCACGCACTGAGCTA
367 GAGTTGAGCCTTGGCTCACACACTGAGCTA
*
123619283 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-TCTCAGATC
1 TTTTTAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCT-TCAGATC
* *
123619347 ACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATT
65 ACACGCTGAGGTA-TTT---TTT-CA-ATTT--A--T-T-T-TTTCAAAAAAATCAACTCATATT
* * * * ** * *
123619412 GCGAGAGGTGAGTTGAGCATCAGATCACACACTGAGGTATTTT---T-T-TACTTCAATTTATAT
117 GCGAGATGTGAGTTGAGCCTCAGGTCACAGAC-GAGGTATTTTCAATCTGTTTTTCAATTTCTAG
* *
123619472 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGA-CGTATTT
181 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGT--CACGCTGAGC-TATTT
* *** **
123619536 TTAATTTCCATTTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
242 TCAATTT-CA--TTT---TTT-T-TTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * * *
123619601 TCAA--GAC-A-CGTTGAGGTA-TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGA
299 TCAATCGACGAGAGTTGAGTTAGTTTTTAATTTCTCTTTTCAAAAAATCAACTCATATTGCGAGA
*
123619661 GGTGAGTTGAGCCTTGGCTCACACGCTGAGCTA
364 GGTGAGTTGAGCCTTGGCTCACACACTGAGCTA
123619694 TTTTTAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTTAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
* *
123619759 CACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGT
66 CACGCTGAGGTATTTTTTCAATTTAT-TTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGT
* * *
123619824 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT-GTTTTCAAAAAT
130 TGAGCCTCAGGTCACA-GACGAGGTATTTTC--AATCTGTTTTTCAATTTCTAGTTTTCAAAAAT
* *
123619888 CAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATT
192 CAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCAC--GCTGAGCTATTTTCAATTTC-ATT
* *
123619953 TTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTG-CGAGA
253 TTTTTTTC-AAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAA--TC-GACGAGA
*
123620017 GTTGAGTTGAGTCTTTTAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
312 GTTGAGTT-AGT-TTTTAATTTCT-CTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
123620081 ACCTCCAGTC
Statistics
Matches: 645, Mismatches: 89, Indels: 128
0.75 0.10 0.15
Matches are distributed among these distances:
398 2 0.00
399 91 0.14
400 5 0.01
401 5 0.01
403 7 0.01
404 3 0.00
405 63 0.10
406 14 0.02
407 47 0.07
408 3 0.00
409 14 0.02
410 61 0.09
411 130 0.20
412 1 0.00
413 4 0.01
414 7 0.01
415 4 0.01
416 43 0.07
417 4 0.01
418 22 0.03
419 15 0.02
421 1 0.00
422 2 0.00
423 2 0.00
424 1 0.00
425 27 0.04
426 30 0.05
428 2 0.00
429 1 0.00
430 34 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (396 bp):
TTTTTAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
CACGCTGAGGTATTTTTTCAATTTATTTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTT
GAGCCTCAGGTCACAGACGAGGTATTTTCAATCTGTTTTTCAATTTCTAGTTTTCAAAAATCAAC
TCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACGCTGAGCTATTTTCAATTTCATTTTTTTTTC
AAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATCGACGAGAGTTGAGTTAGTTTT
TAATTTCTCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACACT
GAGCTA
Found at i:123620124 original size:254 final size:247
Alignment explanation
Indices: 123619619--123620209 Score: 757
Period size: 254 Copynumber: 2.4 Consensus size: 247
123619609 CGTTGAGGTA
* * *
123619619 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* *
123619684 CGCTGAGCTATTTTTAATTTC---TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
66 CGCTGAGCTATTTTCAATTTCTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
123619746 GAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATT
131 GAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATT
* * ** * **
123619811 GCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGT
195 GCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTAC
*
123619864 TTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* *
123619928 TGCTGAGCTATTTTCAATTTCTATTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAG
66 CGCTGAGCTATTTTCAATTTCT-TTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
* * * * * *
123619993 TTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTATTTTTC-AAAAATC
129 TTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATC
*
123620055 AACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTAC
185 AACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTAC
* ** * *
123620118 TTTTCAAGTTAAG-TTTCAAAAAATCAACTCAAATTGTGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
123620182 CGCTGAGCTATTTTCAATTTCTGTTTTT
66 CGCTGAGCTATTTTCAATTTCT-TTTTT
123620210 GATGTCTATT
Statistics
Matches: 300, Mismatches: 31, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 17 0.06
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 143 0.48
255 5 0.02
256 14 0.05
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (247 bp):
TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
CGCTGAGCTATTTTCAATTTCTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTAC
Found at i:123620240 original size:659 final size:653
Alignment explanation
Indices: 123618807--123620258 Score: 1546
Period size: 659 Copynumber: 2.2 Consensus size: 653
123618797 ATTTTGAAAG
** * *
123618807 AATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGACGTATTTTCAATTTCC
* * * * * * ** *
123618872 GTTTTTCAATTTTTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AG
66 ATTTTTCAATGTCTAT-TTTC----AAAAGTCAACTCATATTGCGAAAAATGAGTTGAGCCTCAA
* * * ** *
123618936 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGG-GAGTT
126 GACACGTTGAGGTATTTTCAATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTT
* * *
123619000 GAGCCTCAGG-TCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGGCTTTCAAAAAA
190 GAGCCT-TGGCTCACACGCTGA-G------C----T--ATTTTTCAATTTCTGGCTTTCAAAAAA
* * *
123619064 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
241 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACACTGAGGTAATTTCAATTTATGT
* ** *
123619129 TGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
306 TGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
** * * *
123619194 TCAATTTCTGTTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTG
371 TCAAAATCTGTTTTTCAAATTCTGCCTTTC--AAAAAATCAACTCATATTGCGAGAAGTGAGTTG
123619259 AGCCTTGGCTCACGCACTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCG
434 AGCCTTGGCTCACGCACTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCG
* * *
123619324 AGAGGTGAGTTGAGTCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGTC
499 AGAGGTGAGTTGAGTCTCAGATCACACGCCGAGGTATGTTCAAGTTCCATTTTTCAATTTCTATC
*
123619389 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGATCACACACTGAGGTATTT
564 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACATCAGATCACACACTGAGGTATTT
* * *
123619454 TTTTACTTCAATTTATATTTTTCAAA
628 TTCTACTTCAAGTTATATGTTTCAAA
* *
123619480 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGACGTATTTTTAATTTCC
1 AATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGACGTATTTTCAATTTCC
* * * *
123619545 ATTTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTTCAATGTCTATTTTCAAAAGTCAACTCATATTGCGAAAAATGAGTTGAGCCTCAAGACAC
123619610 GTTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
131 GTTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
*
123619675 TGGCTCACACGCTGAGCTATTTTT-AATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGA
196 TGGCTCACACGCTGAGCTATTTTTCAATTTCTGGCTTTCAAAAAAAATCAACTCATATTGCGAGA
* * * *
123619738 GGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAA
261 GGTGAGTTGAGCCTCAG--CACACACTGAGGTA--ATTTCAATTTAT-GTTGTCAAAAAAATCAA
* * * * *
123619803 CTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTT
321 CTCACATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCTGTTTTT
* **
123619868 CAAATTCTG-TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGC
386 CAAATTCTGCCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCAC
* *
123619931 TGAGCTATTTTCAATTTCTATTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTG
451 TGAGCTATTTTCAATTTC----TGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTG
* * ** * * * *
123619996 AGCTTTTTA-ATTTC-TG-CGA-G-A-GTT-GAGTT-GAGTCTTTT-AATTTCTATTTTTC-AAA
511 AG--TCTCAGATCACACGCCGAGGTATGTTCAAGTTCCA-T-TTTTCAATTTCTATCTTTCAAAA
* *
123620051 AATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACATA-TCGAGGTATTTTCAAAAT
572 AATCAACTCATATTGCGAGAGGTGAGTTGAACAT-CAGATCACACACT-GAGGTATTTT-----T
123620114 CTACTTTTCAAGTTA-A-GTTTCAAAA
630 CTAC--TTCAAGTTATATGTTTC-AAA
* ** * * *
123620139 AATCAACTCAAATTGTGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA-GCTATTTTCAATTTC
1 AATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGACG-TATTTTCAATTTC
** * * * *
123620203 TGTTTTT-GATGTCTATTTTTAGAGAGTCAATTCATATTGCGAAAAATGAGTTGAGC
65 CATTTTTCAATGTCTATTTTCA-AAAGTCAACTCATATTGCGAAAAATGAGTTGAGC
123620259 TCAGGATCAC
Statistics
Matches: 669, Mismatches: 81, Indels: 72
0.81 0.10 0.09
Matches are distributed among these distances:
652 1 0.00
653 51 0.08
654 45 0.07
655 92 0.14
656 23 0.03
657 1 0.00
658 35 0.05
659 186 0.28
660 38 0.06
661 3 0.00
662 4 0.01
668 60 0.09
669 51 0.08
672 4 0.01
673 75 0.11
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (653 bp):
AATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGACGTATTTTCAATTTCC
ATTTTTCAATGTCTATTTTCAAAAGTCAACTCATATTGCGAAAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
TGGCTCACACGCTGAGCTATTTTTCAATTTCTGGCTTTCAAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTCAGCACACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTCAC
ATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCTGTTTTTCAAAT
TCTGCCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGCACTGAGC
TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGAT
CACACGCCGAGGTATGTTCAAGTTCCATTTTTCAATTTCTATCTTTCAAAAAATCAACTCATATT
GCGAGAGGTGAGTTGAACATCAGATCACACACTGAGGTATTTTTCTACTTCAAGTTATATGTTTC
AAA
Found at i:123620910 original size:22 final size:22
Alignment explanation
Indices: 123620858--123620918 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
123620848 GCCCATTAAG
123620858 CCCCCC-AAAAAAAAACCTAAC
1 CCCCCCAAAAAAAAAACCTAAC
****
123620879 CCAAAAAAAAAAAAAACCTAAC
1 CCCCCCAAAAAAAAAACCTAAC
123620901 CCCCCCAAAAAAAAAACC
1 CCCCCCAAAAAAAAAACC
123620919 AAGAAACCCT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 2 0.06
22 29 0.94
ACGTcount: A:0.61, C:0.36, G:0.00, T:0.03
Consensus pattern (22 bp):
CCCCCCAAAAAAAAAACCTAAC
Found at i:123621730 original size:37 final size:37
Alignment explanation
Indices: 123621688--123621789 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
123621678 CTAATATTTT
123621688 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
123621725 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
123621768 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
123621790 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:123630089 original size:19 final size:20
Alignment explanation
Indices: 123630047--123630089 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
123630037 AAAATAAAAT
* *
123630047 AAAAAAAATCTAAAGAAAGA
1 AAAAAAAAACCAAAGAAAGA
*
123630067 AAAAAAAAACCAAGGAAAGA
1 AAAAAAAAACCAAAGAAAGA
123630087 AAA
1 AAA
123630090 TATGAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.77, C:0.07, G:0.12, T:0.05
Consensus pattern (20 bp):
AAAAAAAAACCAAAGAAAGA
Found at i:123630319 original size:16 final size:16
Alignment explanation
Indices: 123630298--123630335 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
123630288 TTGCTAATAT
123630298 TTTTTTTTTGCTAGAA
1 TTTTTTTTTGCTAGAA
*
123630314 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTAGAA
123630330 TTTTTT
1 TTTTTT
123630336 GCTCTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.13, C:0.05, G:0.13, T:0.68
Consensus pattern (16 bp):
TTTTTTTTTGCTAGAA
Found at i:123630599 original size:28 final size:29
Alignment explanation
Indices: 123630539--123630623 Score: 77
Period size: 28 Copynumber: 2.9 Consensus size: 29
123630529 CAAATGCAGC
* *
123630539 AAAACTTCTGGGG-CTAAATGTAATTTTTAG
1 AAAA-TTCAGGGGTCTAAATGTAA-TTTAAG
*
123630569 AAAATTTA-GGGT-TAAATGTAATTTAAGG
1 AAAATTCAGGGGTCTAAATGTAATTTAA-G
*
123630597 AAAGTTCAGGGGTCTAAGATGTAATTT
1 AAAATTCAGGGGTCTAA-ATGTAATTT
123630624 TTTTGAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
27 4 0.09
28 19 0.42
29 6 0.13
30 7 0.16
31 9 0.20
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.35
Consensus pattern (29 bp):
AAAATTCAGGGGTCTAAATGTAATTTAAG
Found at i:123632252 original size:40 final size:40
Alignment explanation
Indices: 123632191--123632271 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
123632181 TCGCTACAAG
* *
123632191 TACGTTTAAATCCAAATACTCATACAAAAGAAGCTTAAGT
1 TACGTTTAAATCCAAACACTCATACAAAAGAAGCCTAAGT
*
123632231 TACGTTTAAATCTAAACACTCATACAAAAGAAGCCTAAGT
1 TACGTTTAAATCCAAACACTCATACAAAAGAAGCCTAAGT
123632271 T
1 T
123632272 TTCAAATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.27
Consensus pattern (40 bp):
TACGTTTAAATCCAAACACTCATACAAAAGAAGCCTAAGT
Found at i:123632314 original size:2 final size:2
Alignment explanation
Indices: 123632307--123632341 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
123632297 GAAAACGAGA
123632307 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
123632342 GGGATTGCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:123637993 original size:14 final size:14
Alignment explanation
Indices: 123637974--123638010 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
123637964 TACTGTCATT
123637974 TTATTATTTTATTA
1 TTATTATTTTATTA
*
123637988 TTATTATTTTATTG
1 TTATTATTTTATTA
123638002 TTATTATTT
1 TTATTATTT
123638011 AGATATTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTATTATTTTATTA
Found at i:123641227 original size:3 final size:3
Alignment explanation
Indices: 123641219--123641253 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
123641209 TAAGCGTTAA
123641219 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
123641254 CACCATCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:123644000 original size:34 final size:34
Alignment explanation
Indices: 123643957--123644037 Score: 144
Period size: 34 Copynumber: 2.4 Consensus size: 34
123643947 ACTCGTTCGG
123643957 TTTTTTATGTATTCACCACTTATTCTTTATTTGC
1 TTTTTTATGTATTCACCACTTATTCTTTATTTGC
*
123643991 TTTTTTATGTATTCACCACTTATTTTTTATTTGC
1 TTTTTTATGTATTCACCACTTATTCTTTATTTGC
*
123644025 TTTTATATGTATT
1 TTTTTTATGTATT
123644038 TGAAGATACG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.19, C:0.14, G:0.06, T:0.62
Consensus pattern (34 bp):
TTTTTTATGTATTCACCACTTATTCTTTATTTGC
Found at i:123648807 original size:13 final size:13
Alignment explanation
Indices: 123648789--123648816 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
123648779 CTAAGATTTT
123648789 TTTTATGTTTTAA
1 TTTTATGTTTTAA
123648802 TTTTATGTTTTAA
1 TTTTATGTTTTAA
123648815 TT
1 TT
123648817 ATATTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (13 bp):
TTTTATGTTTTAA
Found at i:123648824 original size:5 final size:5
Alignment explanation
Indices: 123648814--123648845 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
123648804 TTATGTTTTA
123648814 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
123648846 ATAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:123651107 original size:11 final size:11
Alignment explanation
Indices: 123651053--123651112 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
123651043 ATGTTTAATA
123651053 TTATATAT-TT
1 TTATATATATT
*
123651063 TTCATATATGTT
1 TT-ATATATATT
* *
123651075 ATATATAAGTCTT
1 TTATAT-A-TATT
123651088 TTAATATATATT
1 TT-ATATATATT
123651100 TTATATATATT
1 TTATATATATT
123651111 TT
1 TT
123651113 TTAATGTTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (11 bp):
TTATATATATT
Found at i:123651114 original size:25 final size:25
Alignment explanation
Indices: 123651054--123651117 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
123651044 TGTTTAATAT
* *
123651054 TATATA-TTTTTCATATATGTTATA
1 TATATATTTTTTAATATATATTATA
* *
123651078 TATA-AGTCTTTTAATATATATTTTA
1 TATATA-TTTTTTAATATATATTATA
123651103 TATATATTTTTTAAT
1 TATATATTTTTTAAT
123651118 GTTACTAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.03
24 4 0.12
25 26 0.81
26 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (25 bp):
TATATATTTTTTAATATATATTATA
Found at i:123651170 original size:21 final size:23
Alignment explanation
Indices: 123651146--123651187 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
123651136 ATGTATACCT
123651146 CTAATA-TTATA-TTATATATTC
1 CTAATACTTATATTTATATATTC
*
123651167 CTAATACTTGTATTTATATAT
1 CTAATACTTATATTTATATAT
123651188 ATATGCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 4 0.22
23 8 0.44
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (23 bp):
CTAATACTTATATTTATATATTC
Found at i:123654779 original size:2 final size:2
Alignment explanation
Indices: 123654772--123654813 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
123654762 AGGCATGCAC
*
123654772 TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
123654813 T
1 T
123654814 TTATGCCTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:123655627 original size:40 final size:39
Alignment explanation
Indices: 123655470--123655632 Score: 200
Period size: 39 Copynumber: 4.2 Consensus size: 39
123655460 GCATGATACT
* * **
123655470 TGGAAACATATCCGGACTTGAGGTTCGCAGGTTACATGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* *
123655509 TGGAAGCATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
*
123655548 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTGTGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* * * * *
123655587 TGGAAATATATCCGGGCTTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAACATATCCGGACTTGAGGT-CCGCAGGCTATGTGC
*
123655627 TAGAAA
1 TGGAAA
123655633 TTGGACTCGG
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 91 0.83
40 19 0.17
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
Found at i:123663479 original size:39 final size:39
Alignment explanation
Indices: 123663422--123663553 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
123663412 GCATGATACT
*
123663422 TGGAAACATATCCAGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
123663461 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
123663500 TGGAAACATATCCGGACTTGAGGTCCTCAGGCTATGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
123663539 TGGAAATATATCCGG
1 TGGAAACATATCCGG
123663554 GCTTAAAGTC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:123668809 original size:50 final size:50
Alignment explanation
Indices: 123668734--123668910 Score: 250
Period size: 50 Copynumber: 3.5 Consensus size: 50
123668724 CAATGGCAAC
*
123668734 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAA-TTA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA
* *
123668784 AAGTGATAAATAATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGA
*
123668834 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAA-TGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA
* * *
123668884 CAAGTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
123668911 TTGATCAGTG
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
49 3 0.03
50 86 0.75
51 26 0.23
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGA
Found at i:123668924 original size:31 final size:31
Alignment explanation
Indices: 123668886--123669065 Score: 270
Period size: 31 Copynumber: 5.8 Consensus size: 31
123668876 ACAAATGACA
* * *
123668886 AGTGAAAAGTGGTAGCTTCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
123668917 AGTGAAAAGTGGTAGCTTCTGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
123668948 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
123668979 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
123669010 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
123669041 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
123669066 AAGTGACAAG
Statistics
Matches: 139, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 139 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:123669238 original size:42 final size:43
Alignment explanation
Indices: 123669184--123669298 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
123669174 TATGTGATTC
*
123669184 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
123669226 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
123669268 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
123669299 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:123671763 original size:26 final size:27
Alignment explanation
Indices: 123671727--123671779 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
123671717 TGTCAGCTAG
* *
123671727 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
123671753 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
123671780 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:123678571 original size:89 final size:88
Alignment explanation
Indices: 123678418--123678634 Score: 224
Period size: 88 Copynumber: 2.5 Consensus size: 88
123678408 GTGATCCTGA
* * * *
123678418 GCTCAACTTATTTCTCGCAATATGAATTGACTTTTAAAAACTAGACATTAAAAACAGAAATTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACATTAAAAACAGAAATTG-A
*
123678483 AAATAGC-TCAGCACGTGAGCAAAG
65 AAATA-CATCAGCACGTGACCAAAG
* ** **
123678507 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAC-AGA-ATTTGCCAAACAGATTTTG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACA-TT-AAAAACAGAAATTG
* * **
123678570 AAAATACATCGGCATGTGACCCGAG
64 AAAATACATCAGCACGTGACCAAAG
* * *
123678595 GCTCAACTCACCTCTCGTAATATGAGTTGATTATTAAAAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAA
123678635 GCGTAAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
87 2 0.02
88 59 0.55
89 46 0.43
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (88 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACATTAAAAACAGAAATTGAA
AATACATCAGCACGTGACCAAAG
Found at i:123678723 original size:14 final size:14
Alignment explanation
Indices: 123678706--123678734 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
123678696 GATTTTGACG
123678706 AACAGAAATTGAAA
1 AACAGAAATTGAAA
123678720 AACAGAAATTGAAA
1 AACAGAAATTGAAA
123678734 A
1 A
123678735 GACCCTAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:123678770 original size:161 final size:160
Alignment explanation
Indices: 123678505--123679189 Score: 788
Period size: 146 Copynumber: 4.3 Consensus size: 160
123678495 ACGTGAGCAA
* * ** **
123678505 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA-AAACAGAATTTGCCAAACAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAAAAACAGAAATT
* * * *
123678569 GAAAATACATCGGCATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTATT-AAA
65 GAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGACA
*
123678633 AAGC-GTAAATTGAAAATACCTCAGCGTG-CCTCG
129 AA-CAG-AAATTGAAATTACCTCAGCGTGTCCT-G
*
123678666 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAAAACAGAAATTG
* * *
123678731 AAAAGACC-CTAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTTGACAA
66 AAAATACCTC-AGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAA
* * *
123678795 ACAGAAATTTAAACTACTTCAGCGTGTCCTG
130 ACAGAAATTGAAATTACCTCAGCGTGTCCTG
* * * *
123678826 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGA-AAAGTAGGAATTGAAAAGCAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTGACAAA-CAGAAATTGAAAAACAGA
* * *
123678890 AATTGAAAATACCTCAGC--GTGCCCCGAGGCTCGACTCACCTCTCGCAATATGAGCTGATTTTT
61 AATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
123678953 GACAAACAGAAATTGAAATTACCTCATCGTGTCCTG
125 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCTG
123678989 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATT--------GAAA-T
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACAGAAATTGAAAAACAGAAATT
* * **
123679045 -----TACCTCATC--GTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA
65 GAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGACA
*
123679103 AACAGAAATTGAAATTACCTCATCGTGTCCTG
129 AACAGAAATTGAAATTACCTCAGCGTGTCCTG
123679135 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACAGAAATTGAAA
123679190 TTACCTCATC
Statistics
Matches: 464, Mismatches: 41, Indels: 49
0.84 0.07 0.09
Matches are distributed among these distances:
145 2 0.00
146 132 0.28
151 1 0.00
152 4 0.01
159 2 0.00
160 71 0.15
161 111 0.24
162 35 0.08
163 69 0.15
164 36 0.08
165 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (160 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAAAACAGAAATTG
AAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAA
CAGAAATTGAAATTACCTCAGCGTGTCCTG
Found at i:123678883 original size:14 final size:14
Alignment explanation
Indices: 123678864--123678898 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
123678854 CTGATTTTTT
* *
123678864 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
123678878 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
123678892 TTGAAAA
1 TTGAAAA
123678899 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:123678949 original size:90 final size:90
Alignment explanation
Indices: 123678788--123678952 Score: 260
Period size: 90 Copynumber: 1.8 Consensus size: 90
123678778 TGAGTTGATT
* * * * *
123678788 TTGACAAACAGAAATTTAAACTACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
123678853 GCTGATTTTTTTTGAAAAGTAGGAA
66 GCTGATTTTTTTTGAAAAGTAGGAA
*
123678878 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCGACTCACCTCTCGCAATATG
1 TTGACAAA-CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
123678942 AGCTGATTTTT
65 AGCTGATTTTT
123678953 GACAAACAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
89 3 0.04
90 65 0.96
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (90 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTTTGAAAAGTAGGAA
Found at i:123679005 original size:73 final size:73
Alignment explanation
Indices: 123678878--123679263 Score: 623
Period size: 73 Copynumber: 5.3 Consensus size: 73
123678868 AAAGTAGGAA
* * * * *
123678878 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCGACTCACCTCTCGCAATATG
1 TTGACAAA-CAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
123678942 AGCTGATTT
65 AGTTGATTC
123678951 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
123679016 GTTGATTC
66 GTTGATTC
*
123679024 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
123679089 GTTGATTC
66 GTTGATTC
123679097 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
123679162 GTTGATTC
66 GTTGATTC
*
123679170 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
123679235 GCTGATT-
66 GTTGATTC
* * *
123679242 TTGAAAAAGTAGAAATTAAAAT
1 TTGACAAA-CAGAAATTGAAAT
123679264 GTTCAACCCA
Statistics
Matches: 297, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
72 7 0.02
73 287 0.97
74 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTC
Found at i:123679276 original size:54 final size:54
Alignment explanation
Indices: 123679212--123679317 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
123679202 GTCATGAGGC
* *
123679212 TCAACTCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAGAAATTAAAATGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTCTT-AACAAA-CAGAAATTAAAATGT
* *
123679266 TCAACCCACCTCTCGCCATATGAGTTGATTCTTAACAAACAGAAATTAAAAT
1 TCAACCCACCTCTCGCAATATGAGCTGATTCTTAACAAACAGAAATTAAAAT
123679318 TACCTCAGCG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
54 41 0.89
55 5 0.11
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTCTTAACAAACAGAAATTAAAATGT
Found at i:123679416 original size:71 final size:73
Alignment explanation
Indices: 123679266--123679438 Score: 226
Period size: 71 Copynumber: 2.4 Consensus size: 73
123679256 ATTAAAATGT
* * ** * * *
123679266 TCAACCCACCTCTCGCCATATGAGTTGATTCTTAACAAACAGAAATTAAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATAATTAACAAACAGAAATAAAAAATACCTCAGCGTGC
*
123679331 CCTGAGGC
66 CCCGAGGC
*
123679339 TCAACTCACCTCTCGCAATATGAGTTGA-AATT-A-AAACATAAACTAAAAAATACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATAATTAACAAACAGAAA-TAAAAAATACCTCAGCGTG
123679401 CCCCGAGGC
65 CCCCGAGGC
*
123679410 TCAACTCACTTCTCGCAATATGAGTTGAT
1 TCAACTCACCTCTCGCAATATGAGTTGAT
123679439 TTTAGGAAAG
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
70 8 0.09
71 52 0.59
72 2 0.02
73 26 0.30
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATAATTAACAAACAGAAATAAAAAATACCTCAGCGTGC
CCCGAGGC
Found at i:123679479 original size:14 final size:14
Alignment explanation
Indices: 123679460--123679486 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
123679450 AAAAATTAAA
123679460 AACAGAATTTGAAT
1 AACAGAATTTGAAT
123679474 AACAGAATTTGAA
1 AACAGAATTTGAA
123679487 AATACCTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (14 bp):
AACAGAATTTGAAT
Found at i:123679603 original size:374 final size:374
Alignment explanation
Indices: 123679134--123679818 Score: 1108
Period size: 374 Copynumber: 1.8 Consensus size: 374
123679124 ATCGTGTCCT
* * * *
123679134 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTCAAAAACAGAAATTGAAAATACCTCAG
* *
123679199 CGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAT
66 CGTGTCATGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
*
123679264 GTTCAACCCACCTCTCGCCATATGAGTTGATTCTTAACAAACAGAAATTAAAATTACCTCAGCGT
131 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTAACAAACAGAAATTAAAATTACCTCAGCGT
123679329 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-A-AAACATAAACTAAAAAATA
196 GTCCTG-GGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGACAAACATAAA-TAAAAAATA
*
123679391 CCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAGGAAAGTAAAAAT
259 CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGGAAAGTAAAAAT
123679456 TAAAAACAGAATTTGAATAACAGAATTTGAAAATACCTCGACATGTGACCC
324 TAAAAACAGAATTTGAATAACAGAATTTGAAAATACCTCGACATGTGACCC
* *
123679507 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTCCAAAAATAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTT-CAAAAACAGAAATTGAAAATACCTCA
123679572 GCGTGATC-TGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
65 GCGTG-TCATGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
* * *
123679636 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGT
129 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTAACAAACAGAAATTAAAATTACCTCAGC
** ** *
123679701 GTGTCCTGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAT
194 GTGTCCTGGGCTCAACTCACCTCTCGCAATATGAGTTGA--TAATTGACAAACATAAATAAAAAA
* *
123679766 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
257 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
123679819 TTTGAAAAGT
Statistics
Matches: 285, Mismatches: 20, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
373 68 0.24
374 149 0.52
375 2 0.01
376 2 0.01
377 55 0.19
378 9 0.03
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (374 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTCAAAAACAGAAATTGAAAATACCTCAG
CGTGTCATGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTAACAAACAGAAATTAAAATTACCTCAGCGT
GTCCTGGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGACAAACATAAATAAAAAATACC
TCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGGAAAGTAAAAATTA
AAAACAGAATTTGAATAACAGAATTTGAAAATACCTCGACATGTGACCC
Found at i:123679741 original size:126 final size:128
Alignment explanation
Indices: 123679512--123679743 Score: 353
Period size: 126 Copynumber: 1.8 Consensus size: 128
123679502 GACCCGAGGC
* * *
123679512 TCAACTCACCTCTCGTAATATGAGTTGATTCTTCCAAAAATAGAAATTGAAAATACCTCAGCGTG
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTCCAAAAACAGAAATTGAAAATACCTCAGCGTG
123679577 ATCTGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
66 ATCTGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
* * * *
123679640 TCAACCCACCTCTCGCAATATGAGTTGATTCTT-GACAAACAGAAATTGAAATTACCTCAGTGTG
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTCCAAAAACAGAAATTGAAAATACCTCAGCGTG
* *
123679704 -TCCTG-GGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
66 AT-CTGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
123679744 TTTGACAAAC
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
126 34 0.36
127 29 0.31
128 31 0.33
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (128 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTCTTCCAAAAACAGAAATTGAAAATACCTCAGCGTG
ATCTGAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
Found at i:123679841 original size:75 final size:75
Alignment explanation
Indices: 123679640--123679900 Score: 318
Period size: 81 Copynumber: 3.4 Consensus size: 75
123679630 ATTAAAAGGT
* * * *
123679640 TCAACCCACCTCTCGCAATATGAGTTGA--TTCTTGACAAA-CAGAAATTGAAATTACCTCAGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAGCAGAAATTAAAATTACCTCAGCG
123679702 TGTCCTG-GGC
65 TGTCCTGAGGC
* *
123679712 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAA-CATAAATTGAAATTACCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAGCAGAAATTAAAATTACCTCAGCG
123679776 TGTCCTGAGGC
65 TGTCCTGAGGC
*
123679787 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAAGCAAAAATTGAAAA-TACC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG---A--A-AAGCAGAAATT-AAAATTACC
*
123679851 TCAGCGTGCCCTGAGGC
59 TCAGCGTGTCCTGAGGC
*
123679868 TCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
123679901 GAAAAACATA
Statistics
Matches: 170, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
72 27 0.16
74 38 0.22
75 39 0.23
78 1 0.01
79 1 0.01
80 2 0.01
81 59 0.35
82 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (75 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTAAAATTACCTCAGCGT
GTCCTGAGGC
Found at i:123679924 original size:16 final size:16
Alignment explanation
Indices: 123679903--123679933 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
123679893 TGATTTTTGA
*
123679903 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
123679919 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
123679934 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:123679988 original size:89 final size:88
Alignment explanation
Indices: 123679837--123680096 Score: 405
Period size: 89 Copynumber: 2.9 Consensus size: 88
123679827 GTAGAAGCAA
*
123679837 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
123679902 AAAAACATAAATTGAAGAAAACAG
66 AAAAACATAAATTGAA-AAAACAG
* * * *
123679926 AAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
123679991 AAAAGCATAAATTG-AAAAACGG
66 AAAAACATAAATTGAAAAAACAG
123680013 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* *
123680078 TGACAAACAAAAATTGAAA
64 TGAAAAACATAAATTGAAA
123680097 TTACCCCAGC
Statistics
Matches: 154, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
87 61 0.40
88 1 0.01
89 90 0.58
90 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (88 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAACATAAATTGAAAAAACAG
Found at i:123680018 original size:458 final size:458
Alignment explanation
Indices: 123679266--123680406 Score: 1160
Period size: 458 Copynumber: 2.4 Consensus size: 458
123679256 ATTAAAATGT
* * * * * *
123679266 TCAACCCACCTCTCGCCATATGAGTTGA--TTCTTAACAAACAGAAATTAAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAATTACCTCAGCGT
** * *
123679329 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---AATTAAAACATAAA-C-TAA---A
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ATAAAGCAAAATTGA
* *
123679386 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAGGAAAGTA
130 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-TG-AA--A
* ** *
123679451 AAAATTAAAAACAGAATTTGAATAACAGAATTTGAAAATACCTCGACATGTGACCCGAGGCTCAA
191 AACA-T--AAATTGAA--TGAATAACAGAAATTGAAAATACCTCGACATGT-ACCCGAGGCTCAA
* * * *
123679516 CTCACCTCTCGTAATATGAGTTGATTCTTCCAAAAATAGAAATTGAAAATACCTCAGCGTGATCT
250 CTCACCTCTCGCAATATGAGTTGATTCTTCAAAAAAAAGAAATTGAAAATACCTCAGCGTGACCT
* *
123679581 GAAGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTG-A-AAAAGTAGAAATTA-A-AAGGTT
315 GAAGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAACAAAAATAGAAATTACACAAGGCT
*
123679641 CAACCCACCTCTCGCAATATGAGTTGA-TTCTT-GA-CA-AACA-G-AAATTGAAA-T-TACCTC
380 CAACCCACCTCTCGCAATATGAGTTGATTTCTTAGAGCAGAA-ATGAAAATAGAAATTATACCTC
* *
123679698 AGTGTGTCCTG-GGC
444 AGCGTGCCCTGAGGC
123679712 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAATTACCTCAGCGT
123679777 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAAGCAAAAATT
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-TA-AAGC-AAAATT
* *
123679842 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
128 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAA
* **
123679907 CATAAATTGAA-GAA-AACAGAAATTGAAATTACCTC-AGCATGT-CTTGAGGCTCAACTCACCT
193 CATAAATTGAATGAATAACAGAAATTGAAAATACCTCGA-CATGTACCCGAGGCTCAACTCACCT
*
123679968 CTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAAATTGAAAATACCTCAGCG
257 CTCGCAATATGAGTTGATTCTT------C--AAA---AAAAA--GAAATTGAAAATACCTCAGCG
* * * *
123680033 TGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTGAAAT
309 TGACCTGAAGCTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTG---AACAAAAATAGAAAT
* * *
123680098 TACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAG
369 TA---CA-------C-AAGGCTCAACCCACCTCTCGCAATATGAGTTGA-TTTCTT--AGAGCAG
123680163 AAATTGAAAATAGAAATTGACAATACCTCAGCGTGCCCTGAGGC
420 AAA-TGAAAATAGAAATT----ATACCTCAGCGTGCCCTGAGGC
123680207 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAAACATAAATTGAAATTACCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAAACATAAATTGAAATTACCTCAGCG
123680272 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG---A-AAAGCAGAAATTG
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAAAGCA-AAATTG
** * * *
123680333 AAAATACCTCAATGTGCCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAAC
129 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAAC
*
123680397 AGAAATTGAA
194 ATAAATTGAA
123680407 ATTACCTCAA
Statistics
Matches: 582, Mismatches: 46, Indels: 91
0.81 0.06 0.13
Matches are distributed among these distances:
445 37 0.06
446 27 0.05
447 24 0.04
448 72 0.12
450 1 0.00
451 14 0.02
452 2 0.00
453 4 0.01
454 4 0.01
455 2 0.00
456 6 0.01
457 1 0.00
458 110 0.19
461 5 0.01
465 1 0.00
466 12 0.02
470 1 0.00
479 30 0.05
481 4 0.01
484 2 0.00
485 3 0.01
486 2 0.00
487 1 0.00
488 8 0.01
489 16 0.03
490 62 0.11
491 1 0.00
493 1 0.00
494 15 0.03
495 31 0.05
496 83 0.14
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (458 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATAAAGCAAAATTGAA
AATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAT
AAATTGAATGAATAACAGAAATTGAAAATACCTCGACATGTACCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTCTTCAAAAAAAAGAAATTGAAAATACCTCAGCGTGACCTGAAGCTCAACT
CACCTCTCGCAATATGAGCTGATTTTTGAACAAAAATAGAAATTACACAAGGCTCAACCCACCTC
TCGCAATATGAGTTGATTTCTTAGAGCAGAAATGAAAATAGAAATTATACCTCAGCGTGCCCTGA
GGC
Found at i:123680136 original size:75 final size:74
Alignment explanation
Indices: 123680006--123680606 Score: 504
Period size: 75 Copynumber: 7.9 Consensus size: 74
123679996 CATAAATTGA
* * *
123680006 AAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
123680071 ATTTTTTTG
66 ATTTTTTTG
* * * *
123680080 ACAAACAAAAATTGAAATTACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
123680145 GATTTTTTTG
65 GATTTTTTTG
* ** ** * * * * * * *
123680155 AAGAGCAGAAATTGAAAATAGAAATTGACAAT-ACCTCAGCGTGCCCTGAGGCTCAACTCAC-C-
1 AA-AACAGAAATTGAAAAT--ACCTCAAC-GTGTCCT--GAG-G--CTCA-ACTCACCTCTCGCA
* *
123680217 -TCTCGCAATATGAGTTGATTTTTTTTG
56 ATAT-G-AGT-TGA--T--TTTT--TTG
* * *
123680244 ACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
123680309 GATTTTTTTG
65 GATTTTTTTG
* **
123680319 AAAAGCAGAAATTGAAAATACCTCAATGTG-CCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAA-CAGAAATTGAAAATACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
*
123680383 TGA--ATTTTG
64 TGATTTTTTTG
* * * **
123680392 AAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
123680457 A--ATTTTG
66 ATTTTTTTG
* * ** *
123680464 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATGTGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
123680529 A--ATTTTG
66 ATTTTTTTG
* * **
123680536 AAAAGCAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
123680601 GGTTTT
65 GATTTT
123680607 AGGAAAGTAA
Statistics
Matches: 434, Mismatches: 62, Indels: 61
0.78 0.11 0.11
Matches are distributed among these distances:
72 138 0.32
73 62 0.14
74 7 0.02
75 140 0.32
77 9 0.02
78 1 0.00
79 3 0.01
80 3 0.01
81 12 0.03
82 12 0.03
83 12 0.03
84 3 0.01
85 3 0.01
86 1 0.00
87 10 0.02
89 17 0.04
90 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:123680262 original size:164 final size:160
Alignment explanation
Indices: 123679671--123680801 Score: 993
Period size: 164 Copynumber: 7.0 Consensus size: 160
123679661 GAGTTGATTC
* * *
123679671 TTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCTG-GGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAATAGAAATTGAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
123679735 GTTGATTTTTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
123679800 CGCAATATGAGTTGATTTTTTTGAAAAGTAG-AA
129 CGCAATATGAGTTGA--TTTTTGAAAAGCAGAAA
*
123679833 --G--CA-A-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAATAGAAATTG-AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
123679892 CTGATTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGC
65 TTGA-TTTT--------T---TTG-A-CAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
*
123679957 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAA
116 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAA
123680002 TTGAAAA-ACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAATA--GAAATTG-AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
123680066 AGTTGATTTTTTTGACAAACAAAAATTGAAATTACCCCAGCGTGTCCTGAGGCTCAACTCACCTC
63 AGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
123680131 TCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAA
128 TCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAA
123680166 TTGAAAATAGAAATTGACAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAATAGAAATTGA-AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
123680231 TTGATTTTTTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
65 TTGA-TTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
123680296 CGCAATATGAGTTGATTTTTTTGAAAAGCAGAAA
129 CGCAATATGAGTTGA--TTTTTGAAAAGCAGAAA
** * **
123680330 -T-----T-G--A---AAATACCTCAATGTGCCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TTGAAAATAGAAATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* ** * **
123680383 TGA--ATTTTGA-AAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCG
66 TGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
123680445 CAATATGAGTTGAATTTTGAAAA-CAGAAA
131 CAATATGAGTTGATTTTTGAAAAGCAGAAA
* * * ** *
123680474 -T-----T-GAAA-T----TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATGTGAGT
1 TTGAAAATAGAAATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * **
123680527 TGA--ATTTTGA-AAAGCAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTTGACTCACCTCTC
66 TGATTTTTTTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * * * *
123680589 GCAATATGAGTTGGTTTTAGGAAAGTAAAAA
130 GCAATATGAGTTGATTTTTGAAAAGCAGAAA
* * * * * *
123680620 TTAAAAACAGAATTTGAAAATACCTC-GACATGTGACCC-GAGGCTCAACTCATCTATTGCAATA
1 TTGAAAATAGAAATTG-AAATACCTCAG-C--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
* * *
123680683 TGAGTTGATTTTGACGAACGGGATTTGA-AGAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-
61 TGAGTTGATTTT-----------TTTGACA-AACAGAAATTGAAATTACCTCAG--CGTG-TCCT
* * *
123680746 AAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
111 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAA
123680796 TT-AAAA
1 TTGAAAA
123680802 GGCTTAACTC
Statistics
Matches: 825, Mismatches: 76, Indels: 123
0.81 0.07 0.12
Matches are distributed among these distances:
144 65 0.08
145 68 0.08
146 5 0.01
147 60 0.07
148 6 0.01
151 46 0.06
152 1 0.00
153 3 0.00
154 1 0.00
155 22 0.03
156 34 0.04
157 6 0.01
158 1 0.00
159 7 0.01
160 1 0.00
161 32 0.04
162 63 0.08
163 61 0.07
164 116 0.14
165 2 0.00
167 1 0.00
168 15 0.02
169 3 0.00
170 62 0.08
171 1 0.00
173 2 0.00
174 25 0.03
175 10 0.01
176 104 0.13
177 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (160 bp):
TTGAAAATAGAAATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAGCAGAAA
Found at i:123680432 original size:72 final size:72
Alignment explanation
Indices: 123680166--123680601 Score: 550
Period size: 72 Copynumber: 5.9 Consensus size: 72
123680156 AGAGCAGAAA
* *
123680166 TTGAAAATAGAAATTGACAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAATTGA-AATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
123680230 GTTGATTTTTT
65 GTTGA---ATT
* * *
123680241 TTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
123680306 GTTGATTTTT
65 GTTGA--ATT
* * * **
123680316 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGCCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
123680381 GTTGAATT
65 GTTGAATT
* * * **
123680389 TTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
123680454 TTGAATT
66 TTGAATT
* * ** *
123680461 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATGTGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
123680526 TTGAATT
66 TTGAATT
* * **
123680533 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
123680598 GTTG
65 GTTG
123680602 GTTTTAGGAA
Statistics
Matches: 332, Mismatches: 25, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
72 140 0.42
73 61 0.18
74 3 0.01
75 69 0.21
76 59 0.18
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGAATT
Found at i:123680688 original size:88 final size:87
Alignment explanation
Indices: 123680533--123680782 Score: 272
Period size: 88 Copynumber: 2.9 Consensus size: 87
123680523 GAGTTGAATT
* * ** *
123680533 TTGAAAAGCAGAAATTGAAAATACCTCA-ACGTGCCCCGAGGCTTGACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCACACGTGACCCGAGGCTCAACTCATCTCTCGCAATATG
* *
123680597 AGTTGGTTTT-AGGAAAGTAAAAA
66 AGTTGATTTTGACGAAAG--AAAA
* * * *
123680620 TT-AAAAACAGAATTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCATCTATTGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTC-ACACGTGACCCGAGGCTCAACTCATCTCTCGCAATAT
* ** *
123680684 GAGTTGATTTTGACGAACGGGAT
65 GAGTTGATTTTGACGAAAGAAAA
* * * *
123680707 TTGAAGAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCATCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCA-CACGTGACCCGAGGCTCAACTCATCTCTCGCAATAT
123680772 GAGTTGATTTT
65 GAGTTGATTTT
123680783 TGAAAAACAG
Statistics
Matches: 135, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
86 22 0.16
87 7 0.05
88 101 0.75
89 5 0.04
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAAATACCTCACACGTGACCCGAGGCTCAACTCATCTCTCGCAATATG
AGTTGATTTTGACGAAAGAAAA
Found at i:123680952 original size:70 final size:71
Alignment explanation
Indices: 123680801--123681151 Score: 373
Period size: 74 Copynumber: 4.9 Consensus size: 71
123680791 AGAAATTAAA
* * * ** * *
123680801 AGGCTTAACTCACCTTTCGCAAGATGAGTCAATTTTCT-AAACATAAACTAAAAATACCTCTGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TGAAACATAAATTAAAAATACCTCAGCG
* *
123680865 TGCCCCG
65 TGTCCTG
* * * *
123680872 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGGAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
*
123680936 GTCTTG
66 GTCCTG
* * *
123680942 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAATAGGAATTAAAAACACTTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAC-ATA--AATTAAAAATACCTCAG
*
123681007 CGTGACCTG
63 CGTGTCCTG
** ** *
123681016 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
123681081 GTGACCTG
66 GT--CCTG
** * * *
123681089 AGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAACATAAATTAAAAATACCTCAG
123681152 AGTACCCAAA
Statistics
Matches: 230, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
69 1 0.00
70 58 0.25
71 53 0.23
72 3 0.01
73 38 0.17
74 77 0.33
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
GTCCTG
Found at i:123683286 original size:14 final size:13
Alignment explanation
Indices: 123683243--123683302 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 13
123683233 TGGCTTTTGA
123683243 TTTCTTTTTTTCT
1 TTTCTTTTTTTCT
*
123683256 TGTCATTTTTTTCT
1 TTTC-TTTTTTTCT
*
123683270 TTTCGTTTTTTTGTT
1 TTTC-TTTTTTT-CT
*
123683285 TTTTTTCTTTTTCT
1 TTTCTT-TTTTTCT
123683299 TTTC
1 TTTC
123683303 ATGACTATCG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
13 3 0.08
14 25 0.68
15 9 0.24
ACGTcount: A:0.02, C:0.13, G:0.05, T:0.80
Consensus pattern (13 bp):
TTTCTTTTTTTCT
Found at i:123687778 original size:16 final size:17
Alignment explanation
Indices: 123687752--123687789 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
123687742 ATATATATAT
123687752 ATATATATTAAGCATAC
1 ATATATATTAAGCATAC
123687769 ATATAT-TTAAGCATAC
1 ATATATATTAAGCATAC
123687785 ATATA
1 ATATA
123687790 ATAATAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (17 bp):
ATATATATTAAGCATAC
Found at i:123687979 original size:21 final size:21
Alignment explanation
Indices: 123687943--123687993 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
123687933 ATATATATAG
*
123687943 TAACAACGATAATAATAATAA
1 TAACAACAATAATAATAATAA
* *
123687964 TAACAACAATACTAATTATAA
1 TAACAACAATAATAATAATAA
* *
123687985 AAATAACAA
1 TAACAACAA
123687994 GGACATTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.24
Consensus pattern (21 bp):
TAACAACAATAATAATAATAA
Found at i:123690769 original size:20 final size:20
Alignment explanation
Indices: 123690744--123690781 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
123690734 TTTATCAATG
123690744 TTTACAACAT-ATTTTACACA
1 TTTACAAC-TCATTTTACACA
123690764 TTTACAACTCATTTTACA
1 TTTACAACTCATTTTACA
123690782 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTACAACTCATTTTACACA
Found at i:123693664 original size:44 final size:44
Alignment explanation
Indices: 123693562--123693722 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
123693552 GTCGATGCCG
* * *
123693562 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
123693608 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
123693652 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
123693698 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
123693723 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:123693739 original size:46 final size:43
Alignment explanation
Indices: 123693605--123693767 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
123693595 CCGTGCTGAC
*
123693605 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
123693649 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
123693695 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
123693741 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
123693768 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:123695417 original size:20 final size:20
Alignment explanation
Indices: 123695392--123695429 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
123695382 TTTATCAATG
123695392 TTTACAACAT-ATTTTACACA
1 TTTACAAC-TCATTTTACACA
123695412 TTTACAACTCATTTTACA
1 TTTACAACTCATTTTACA
123695430 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTACAACTCATTTTACACA
Found at i:123697844 original size:43 final size:43
Alignment explanation
Indices: 123697783--123697869 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
123697773 ATAAATTCAG
123697783 ACCAGGTTGCAAGCATTTTAACAAGCTTGAATCTTTGGTTCTA
1 ACCAGGTTGCAAGCATTTTAACAAGCTTGAATCTTTGGTTCTA
123697826 ACCAGGTTGCAAGCATTTTAACAAGCTTGAATCTTTGGTTCTA
1 ACCAGGTTGCAAGCATTTTAACAAGCTTGAATCTTTGGTTCTA
123697869 A
1 A
123697870 GGCAAGGAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (43 bp):
ACCAGGTTGCAAGCATTTTAACAAGCTTGAATCTTTGGTTCTA
Done.