Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 426 of 427
Found at i:124120563 original size:256 final size:256
Alignment explanation
Indices: 124120158--124120775 Score: 1038
Period size: 256 Copynumber: 2.4 Consensus size: 256
124120148 ATTAAAAGGT
* * * * *
124120158 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCA-CTCTCGCAATATGAGTTGATT-TTGA-AAACAAAAATTAAAAATACCTCAACGTGT
* * *
124120223 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAGCACAAAAATTGAAAATACCTC
63 CTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG--ATTAAAACACAAAAATTGAAAATACCTC
*
124120288 AGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAATAAAAA
126 AGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATAAAAA
*
124120353 GGCTTAACTCACCTCTCGCAGTATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGG
191 GGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGG
124120418 C
256 C
*
124120419 TCAACTCTCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTT
1 TCAACTCACTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTT
*
124120484 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAATACAAAAATTGAAAATACCTCAGCGT
66 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGT
*
124120549 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTT
131 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATAAAAAGGCTT
*
124120614 AACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCCCGAGGC
196 AACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGC
* *
124120675 TCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAAACACCTCAACGTGTCT
1 TCAACTCAC-TCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCT
124120740 TGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
65 TGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
124120776 TTCCTTGAAA
Statistics
Matches: 339, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
256 161 0.47
257 89 0.26
258 58 0.17
259 4 0.01
260 21 0.06
261 6 0.02
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (256 bp):
TCAACTCACTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTT
GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGT
GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATAAAAAGGCTT
AACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGC
Found at i:124125817 original size:12 final size:12
Alignment explanation
Indices: 124125797--124125832 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
124125787 TGGGATATGC
*
124125797 AATGTATGAATG
1 AATGCATGAATG
124125809 AATGCATGAATG
1 AATGCATGAATG
124125821 AATGCATGAATG
1 AATGCATGAATG
124125833 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:124127607 original size:37 final size:38
Alignment explanation
Indices: 124127507--124127608 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
124127497 ATATATTTGG
124127507 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
124127543 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
124127585 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
124127609 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:124128423 original size:23 final size:23
Alignment explanation
Indices: 124128393--124128441 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
124128383 TTTTTTCTTC
124128393 TTTTTTTTT-GGGTTAGGTTTTT
1 TTTTTTTTTAGGGTTAGGTTTTT
124128415 TTTTTTTTTAGGGTTAGGTTTTT
1 TTTTTTTTTAGGGTTAGGTTTTT
124128438 TTTT
1 TTTT
124128442 GGGGGCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.06, C:0.00, G:0.20, T:0.73
Consensus pattern (23 bp):
TTTTTTTTTAGGGTTAGGTTTTT
Found at i:124131001 original size:11 final size:11
Alignment explanation
Indices: 124130976--124131016 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
124130966 GTAGAATGCA
*
124130976 GAGTGGGATGT
1 GAGTGGAATGT
124130987 GAGTGAGAATG-
1 GAGTG-GAATGT
124130998 GAGTGGAATGT
1 GAGTGGAATGT
124131009 GAGTGGAA
1 GAGTGGAA
124131017 AAGATGCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 5 0.19
11 18 0.67
12 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (11 bp):
GAGTGGAATGT
Found at i:124131241 original size:82 final size:81
Alignment explanation
Indices: 124131142--124131381 Score: 416
Period size: 77 Copynumber: 3.0 Consensus size: 81
124131132 TAATAACAAA
*
124131142 GCTTTCCACTTTCTTTCTATGTTTATGTTTATTTTAAAATTTCATTATCTCCTTCTATTTTCATG
1 GCTTTCCACTTTCTTTCTTTGTTTATGTTTATTTTAAAATTTCATTATCTCCTTCTATTTTCATG
124131207 TGTTGTTTGGGCAGAG
66 TGTTGTTTGGGCAGAG
*
124131223 CGCTTTCCACTTTCTTTCTTTGTTTATGTTTATTTTAAAATTTCATTATCT-CATCTATTTTCAT
1 -GCTTTCCACTTTCTTTCTTTGTTTATGTTTATTTTAAAATTTCATTATCTCCTTCTATTTTCAT
124131287 GTGTTGTTTGGGC--A-
65 GTGTTGTTTGGGCAGAG
*
124131301 GCTTTCCACTTTCTTTCTTTGTTTATGTTTATTTTAAAATTTCATTATCTCATTCTATTTTCATG
1 GCTTTCCACTTTCTTTCTTTGTTTATGTTTATTTTAAAATTTCATTATCTCCTTCTATTTTCATG
124131366 TGTTGTTTGGGCAGAG
66 TGTTGTTTGGGCAGAG
124131382 AGTTTGATGG
Statistics
Matches: 150, Mismatches: 4, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
77 50 0.33
78 24 0.16
79 1 0.01
80 1 0.01
81 25 0.17
82 49 0.33
ACGTcount: A:0.17, C:0.16, G:0.13, T:0.54
Consensus pattern (81 bp):
GCTTTCCACTTTCTTTCTTTGTTTATGTTTATTTTAAAATTTCATTATCTCCTTCTATTTTCATG
TGTTGTTTGGGCAGAG
Found at i:124131404 original size:30 final size:30
Alignment explanation
Indices: 124131368--124131428 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
124131358 TTTTCATGTG
*
124131368 TTGTTTGGGCAGAGAGTTTGATGGAGAAGT
1 TTGTTTGGGCAGAGAGTTAGATGGAGAAGT
* *
124131398 TTGTTTGTGCAGAGAGTTAGATGGATAAGT
1 TTGTTTGGGCAGAGAGTTAGATGGAGAAGT
124131428 T
1 T
124131429 CATAACAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.03, G:0.36, T:0.36
Consensus pattern (30 bp):
TTGTTTGGGCAGAGAGTTAGATGGAGAAGT
Found at i:124132022 original size:15 final size:15
Alignment explanation
Indices: 124131998--124132028 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
124131988 CTCCCTCGTA
*
124131998 TGTTTGATGTATGTT
1 TGTTTCATGTATGTT
124132013 TGTTTCATGTATGTT
1 TGTTTCATGTATGTT
124132028 T
1 T
124132029 TTGTTGATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.23, T:0.61
Consensus pattern (15 bp):
TGTTTCATGTATGTT
Found at i:124132530 original size:21 final size:21
Alignment explanation
Indices: 124132495--124132548 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
124132485 TATTAATTAT
*
124132495 AAAATTTTATGTTATGAA-AATA
1 AAAATTTTA-ATTAT-AATAATA
*
124132517 AAAATTTTAATTATAATAGTA
1 AAAATTTTAATTATAATAATA
*
124132538 AAAATATTAAT
1 AAAATTTTAAT
124132549 ATTTTATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 17 0.61
22 9 0.32
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.41
Consensus pattern (21 bp):
AAAATTTTAATTATAATAATA
Found at i:124134331 original size:47 final size:49
Alignment explanation
Indices: 124134233--124134333 Score: 127
Period size: 47 Copynumber: 2.1 Consensus size: 49
124134223 AAATAGTATT
** * *
124134233 TAAATAATAATTTGGTAAAAATAAAGTTTAATAATTACAAATTTAAGTA
1 TAAATAATAATTAAGTAAAAATAAACTTGAATAATTACAAATTTAAGTA
*
124134282 TAAATAATAATTAAGT-AAAA-AAACTTGAATAATTATAATATTTAA-TA
1 TAAATAATAATTAAGTAAAAATAAACTTGAATAATTACAA-ATTTAAGTA
124134329 TAAAT
1 TAAAT
124134334 TGAGCGTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
47 22 0.48
48 10 0.22
49 14 0.30
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (49 bp):
TAAATAATAATTAAGTAAAAATAAACTTGAATAATTACAAATTTAAGTA
Found at i:124135992 original size:19 final size:19
Alignment explanation
Indices: 124135970--124136019 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
124135960 TTTAGTCTTA
*
124135970 TTTTTTATTTTTTATTTGT
1 TTTTTTATTTTATATTTGT
*
124135989 TTTTTGT-TTTAATATTTGT
1 TTTTT-TATTTTATATTTGT
*
124136008 TTTTATATTTTA
1 TTTTTTATTTTA
124136020 AATGTATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.04
19 23 0.92
20 1 0.04
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (19 bp):
TTTTTTATTTTATATTTGT
Found at i:124136038 original size:25 final size:23
Alignment explanation
Indices: 124135982--124136046 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
124135972 TTTTATTTTT
*
124135982 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
124136001 TATTTGTTTTTATATTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
124136024 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
124136047 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 5 0.13
21 2 0.05
23 6 0.15
24 3 0.08
25 12 0.31
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:124147345 original size:5 final size:5
Alignment explanation
Indices: 124147335--124147362 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
124147325 TATTTATTTA
124147335 TATGC TATGC TATGC TATGC TATGC TAT
1 TATGC TATGC TATGC TATGC TATGC TAT
124147363 ACCATACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (5 bp):
TATGC
Found at i:124147387 original size:5 final size:5
Alignment explanation
Indices: 124147339--124147419 Score: 81
Period size: 5 Copynumber: 16.2 Consensus size: 5
124147329 TATTTATATG
* * * * * * * * *
124147339 CTATG CTATG CTATG CTATG CTATA CCATA CTAAA CTATG CTGTA CTGTA
1 CTATA CTATA CTATA CTATA CTATA CTATA CTATA CTATA CTATA CTATA
124147389 CTATA CTATA CTATA CTATA CTATA CTATA C
1 CTATA CTATA CTATA CTATA CTATA CTATA C
124147420 ACCCATCTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 67 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (5 bp):
CTATA
Found at i:124154582 original size:154 final size:156
Alignment explanation
Indices: 124154277--124154586 Score: 588
Period size: 154 Copynumber: 2.0 Consensus size: 156
124154267 GTCCACATAA
*
124154277 GATGCAGATCGAGGGATGCACATGTTAAAAGGATGAAAAGAATCGACGTAGCTCATGGTAAAACG
1 GATGCAGATAGAGGGATGCACATGTTAAAAGGATGAAAAGAATCGACGTAGCTCATGGTAAAACG
124154342 TGGAAGGTAGCCAAAATAAGATGGTTGGAAGTGATAAATCATTATATCCATTCCAACTTTAAAAT
66 TGGAAGGTAGCCAAAATAAGATGGTTGGAAGTGATAAATCATTATATCCATTCCAACTTTAAAAT
124154407 TCGATGGTTAAAGATAAAAATGTGTC
131 TCGATGGTTAAAGATAAAAATGTGTC
*
124154433 GATGCAGATAGAGGGATGCACATGTTAAAAGGATGAAAAGAATCGACGTAGCTCATGGTAAAAGG
1 GATGCAGATAGAGGGATGCACATGTTAAAAGGATGAAAAGAATCGACGTAGCTCATGGTAAAACG
124154498 TGGAAGGTAG-C-AAATAAGATGGTTGGAAGTGATAAATCATTATATCCATTCCAACTTTAAAAT
66 TGGAAGGTAGCCAAAATAAGATGGTTGGAAGTGATAAATCATTATATCCATTCCAACTTTAAAAT
124154561 TCGATGGTTAAAGATAAAAATGTGTC
131 TCGATGGTTAAAGATAAAAATGTGTC
124154587 TTTTCGTTCT
Statistics
Matches: 152, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
154 78 0.51
155 1 0.01
156 73 0.48
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.25
Consensus pattern (156 bp):
GATGCAGATAGAGGGATGCACATGTTAAAAGGATGAAAAGAATCGACGTAGCTCATGGTAAAACG
TGGAAGGTAGCCAAAATAAGATGGTTGGAAGTGATAAATCATTATATCCATTCCAACTTTAAAAT
TCGATGGTTAAAGATAAAAATGTGTC
Found at i:124155473 original size:24 final size:24
Alignment explanation
Indices: 124155446--124155497 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
124155436 TTTTTTTTCC
124155446 AATTTTATTTT-ATTTTTAATTTTA
1 AATTTTATTTTAATTTTT-ATTTTA
* *
124155470 AATTTTTTTTTAATTTTTGTTTTA
1 AATTTTATTTTAATTTTTATTTTA
124155494 AATT
1 AATT
124155498 ACATCACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (24 bp):
AATTTTATTTTAATTTTTATTTTA
Found at i:124155479 original size:18 final size:16
Alignment explanation
Indices: 124155435--124155486 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 16
124155425 TACAAAAAAG
124155435 TTTTTTTTTCCAATTTTA
1 TTTTTTTTT--AATTTTA
124155453 TTTTATTTTTAATTTTAAA
1 TTTT-TTTTTAATTTT--A
124155472 TTTTTTTTTAATTTT
1 TTTTTTTTTAATTTT
124155487 TGTTTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.19
18 15 0.48
19 10 0.32
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTTTTTAATTTTA
Found at i:124155487 original size:12 final size:12
Alignment explanation
Indices: 124155448--124155494 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
124155438 TTTTTTCCAA
124155448 TTTTATTTT-AT
1 TTTTATTTTAAT
124155459 TTTTAATTTTAAAT
1 TTTT-ATTTT-AAT
124155473 TTTT-TTTTAAT
1 TTTTATTTTAAT
*
124155484 TTTTGTTTTAA
1 TTTTATTTTAA
124155495 ATTACATCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 11 0.34
12 15 0.47
14 6 0.19
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTATTTTAAT
Found at i:124160435 original size:3 final size:3
Alignment explanation
Indices: 124160427--124160458 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
124160417 ATTAAAAAAT
*
124160427 AAC AAC AAC GAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
124160459 GAAGTTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.31, G:0.03, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:124181444 original size:15 final size:15
Alignment explanation
Indices: 124181426--124181463 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
124181416 CTTTCAGTAT
* *
124181426 TCTCTCTTTGTAAAC
1 TCTCTCTTTATAAAA
124181441 TCTCTCTTTATAAAA
1 TCTCTCTTTATAAAA
124181456 TCT-TCTTT
1 TCTCTCTTT
124181464 TTACTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.53
Consensus pattern (15 bp):
TCTCTCTTTATAAAA
Found at i:124192367 original size:81 final size:81
Alignment explanation
Indices: 124192258--124192503 Score: 447
Period size: 81 Copynumber: 3.0 Consensus size: 81
124192248 TGTATAATTG
* *
124192258 ATCTTTGCATCACATATATGCATATTTATATGCGATACAAAAGAAAGCAAATTACTACAATATTG
1 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
*
124192323 CGATTTCATTGATGGA
66 TGATTTCATTGATGGA
124192339 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
1 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
*
124192404 TTATTTCATTGATGGA
66 TGATTTCATTGATGGA
*
124192420 ATCTTTGTATCACATGTATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
1 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
124192485 TGATTTCATTGATGGA
66 TGATTTCATTGATGGA
124192501 ATC
1 ATC
124192504 ACATTCTGTT
Statistics
Matches: 159, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 159 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (81 bp):
ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
TGATTTCATTGATGGA
Found at i:124198130 original size:36 final size:36
Alignment explanation
Indices: 124198085--124198173 Score: 137
Period size: 35 Copynumber: 2.5 Consensus size: 36
124198075 TTTGTAAAAT
*
124198085 ATTTTTTGAAATTTTTATAAAAATATATAAT-GATAA
1 ATTTATTGAAATTTTTATAAAAATATAT-ATCGATAA
124198121 ATTTATTGAAA-TTTTATAAAAATATATATCGATAA
1 ATTTATTGAAATTTTTATAAAAATATATATCGATAA
124198156 ATTTATTGAAAATTTTTA
1 ATTTATTG-AAATTTTTA
124198174 AATATGTATA
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
34 2 0.04
35 29 0.59
36 13 0.27
37 5 0.10
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.47
Consensus pattern (36 bp):
ATTTATTGAAATTTTTATAAAAATATATATCGATAA
Found at i:124198141 original size:35 final size:36
Alignment explanation
Indices: 124198085--124198184 Score: 134
Period size: 35 Copynumber: 2.8 Consensus size: 36
124198075 TTTGTAAAAT
*
124198085 ATTTTTTGAAATTTTTATAAAAATATATAAT-GATAA
1 ATTTATTGAAA-TTTTATAAAAATATATAATCGATAA
124198121 ATTTATTGAAATTTTATAAAAATATAT-ATCGATAA
1 ATTTATTGAAATTTTATAAAAATATATAATCGATAA
* *
124198156 ATTTATTGAAAATTTT-TAAATATGTATAA
1 ATTTATTG-AAATTTTATAAAAATATATAA
124198185 ATGTTAAACT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
34 2 0.03
35 38 0.66
36 18 0.31
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (36 bp):
ATTTATTGAAATTTTATAAAAATATATAATCGATAA
Found at i:124200526 original size:12 final size:12
Alignment explanation
Indices: 124200509--124200539 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
124200499 CAGCAGCAAC
124200509 AGAAGAAAAAGA
1 AGAAGAAAAAGA
124200521 AGAAGAAAAAGA
1 AGAAGAAAAAGA
*
124200533 AAAAGAA
1 AGAAGAA
124200540 GCAGTAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AGAAGAAAAAGA
Found at i:124200530 original size:42 final size:42
Alignment explanation
Indices: 124200481--124200562 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
124200471 GGATGAAAAA
*
124200481 AAGAAAAAGAAAAAGCAGCAGCAGCAACAGAAGAAAAAGAAG
1 AAGAAAAAGAAAAAGAAGCAGCAGCAACAGAAGAAAAAGAAG
* *
124200523 AAGAAAAAGAAAAAGAAGCAGTAGCAACAGAAGAAGAAGA
1 AAGAAAAAGAAAAAGAAGCAGCAGCAACAGAAGAAAAAGA
124200563 GACTGTTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.65, C:0.10, G:0.24, T:0.01
Consensus pattern (42 bp):
AAGAAAAAGAAAAAGAAGCAGCAGCAACAGAAGAAAAAGAAG
Found at i:124201502 original size:30 final size:30
Alignment explanation
Indices: 124201449--124201517 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 30
124201439 ACTGTTAGTC
*
124201449 AGTGACTGTTTTGTCACTTTTTTATAACGTT
1 AGTGACTGTTTTGTCACTTTTTTA-AAAGTT
*
124201480 AGTGACTGTTTTGTTA-TTTTTTAAAAGTT
1 AGTGACTGTTTTGTCACTTTTTTAAAAGTT
124201509 AGGTGACTG
1 A-GTGACTG
124201518 AAATGAAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 6 0.17
30 14 0.40
31 15 0.43
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.49
Consensus pattern (30 bp):
AGTGACTGTTTTGTCACTTTTTTAAAAGTT
Found at i:124203246 original size:14 final size:14
Alignment explanation
Indices: 124203229--124203276 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
124203219 GATTTAAATT
124203229 TTAAAATATAAAAA
1 TTAAAATATAAAAA
* *
124203243 TTAAAATTTTAAAA
1 TTAAAATATAAAAA
*
124203257 TTAAAAATATGAAAA
1 TT-AAAATATAAAAA
124203272 TTAAA
1 TTAAA
124203277 TTTTAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (14 bp):
TTAAAATATAAAAA
Found at i:124203250 original size:22 final size:23
Alignment explanation
Indices: 124203225--124203273 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
124203215 GTTTGATTTA
124203225 AATTTTAAAATATAAAAAT-T-AA
1 AATTTTAAAAT-TAAAAATATGAA
124203247 AATTTTAAAATTAAAAATATGAA
1 AATTTTAAAATTAAAAATATGAA
124203270 AATT
1 AATT
124203274 AAATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 7 0.28
22 12 0.48
23 6 0.24
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
AATTTTAAAATTAAAAATATGAA
Found at i:124203253 original size:29 final size:28
Alignment explanation
Indices: 124203221--124203287 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 28
124203211 AGGAGTTTGA
124203221 TTTAAATTTTAAAATATAAAAATTAAAAT
1 TTTAAATTTTAAAATATAAAAATT-AAAT
* * *
124203250 TTTAAAATTAAAAATATGAAAATTAAAT
1 TTTAAATTTTAAAATATAAAAATTAAAT
124203278 TTTAAATTTT
1 TTTAAATTTT
124203288 GAAAGAGTAG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 12 0.36
29 21 0.64
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (28 bp):
TTTAAATTTTAAAATATAAAAATTAAAT
Found at i:124203263 original size:15 final size:15
Alignment explanation
Indices: 124203231--124203276 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
124203221 TTTAAATTTT
*
124203231 AAAATATAAAAATT-
1 AAAATATGAAAATTA
* *
124203245 AAAATTTTAAAATTA
1 AAAATATGAAAATTA
124203260 AAAATATGAAAATTA
1 AAAATATGAAAATTA
124203275 AA
1 AA
124203277 TTTTAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (15 bp):
AAAATATGAAAATTA
Found at i:124208683 original size:18 final size:17
Alignment explanation
Indices: 124208651--124208684 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
124208641 GTGATTTAAT
124208651 ATAAATATAAATATAAC
1 ATAAATATAAATATAAC
*
124208668 ATAAATAATTAATATAA
1 ATAAAT-ATAAATATAA
124208685 TATTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAATATAAATATAAC
Found at i:124212840 original size:1 final size:1
Alignment explanation
Indices: 124212834--124212859 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
124212824 ATCCAAGACC
124212834 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
124212860 GACTTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:124218209 original size:29 final size:30
Alignment explanation
Indices: 124218159--124218220 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
124218149 CCAACTAAAA
* *
124218159 GATCTCATTTAATAGTACAGGGACCAAATT
1 GATCTCATTGAATAATACAGGGACCAAATT
* *
124218189 GATCT-ATTGAATAATAGAGGGACCAATTT
1 GATCTCATTGAATAATACAGGGACCAAATT
124218218 GAT
1 GAT
124218221 AAGGTCCCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (30 bp):
GATCTCATTGAATAATACAGGGACCAAATT
Found at i:124220312 original size:268 final size:268
Alignment explanation
Indices: 124219835--124220371 Score: 1065
Period size: 268 Copynumber: 2.0 Consensus size: 268
124219825 CCTCAGTATA
124219835 AAACCCAATAGCCTTCTGCCATTGCTTATCTTTGTATGCTTGGTTGCCCTAAACCAGAGAATTTG
1 AAACCCAATAGCCTTCTGCCATTGCTTATCTTTGTATGCTTGGTTGCCCTAAACCAGAGAATTTG
124219900 TAAACAGAAAAAAATTATTTAAGACAAAGGAGACAATGTGCAGGAAAAGAAAAGGGTTGTGCAAC
66 TAAACAGAAAAAAATTATTTAAGACAAAGGAGACAATGTGCAGGAAAAGAAAAGGGTTGTGCAAC
*
124219965 AAAGCTAACTATTTAATACATACACTAGAATCTAAGAAACAATACAAGGATAAACCATACAACGG
131 AAAGCTAACTATGTAATACATACACTAGAATCTAAGAAACAATACAAGGATAAACCATACAACGG
124220030 ATCATGTACCGAGAACATATGCCAAGCCTTAGTGAAATAAGCTCAGCAAAAGGAAAAATAAATAA
196 ATCATGTACCGAGAACATATGCCAAGCCTTAGTGAAATAAGCTCAGCAAAAGGAAAAATAAATAA
124220095 ACATATGC
261 ACATATGC
124220103 AAACCCAATAGCCTTCTGCCATTGCTTATCTTTGTATGCTTGGTTGCCCTAAACCAGAGAATTTG
1 AAACCCAATAGCCTTCTGCCATTGCTTATCTTTGTATGCTTGGTTGCCCTAAACCAGAGAATTTG
124220168 TAAACAGAAAAAAATTATTTAAGACAAAGGAGACAATGTGCAGGAAAAGAAAAGGGTTGTGCAAC
66 TAAACAGAAAAAAATTATTTAAGACAAAGGAGACAATGTGCAGGAAAAGAAAAGGGTTGTGCAAC
124220233 AAAGCTAACTATGTAATACATACACTAGAATCTAAGAAACAATACAAGGATAAACCATACAACGG
131 AAAGCTAACTATGTAATACATACACTAGAATCTAAGAAACAATACAAGGATAAACCATACAACGG
124220298 ATCATGTACCGAGAACATATGCCAAGCCTTAGTGAAATAAGCTCAGCAAAAGGAAAAATAAATAA
196 ATCATGTACCGAGAACATATGCCAAGCCTTAGTGAAATAAGCTCAGCAAAAGGAAAAATAAATAA
124220363 ACATATGC
261 ACATATGC
124220371 A
1 A
124220372 CAATTTAACT
Statistics
Matches: 268, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
268 268 1.00
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (268 bp):
AAACCCAATAGCCTTCTGCCATTGCTTATCTTTGTATGCTTGGTTGCCCTAAACCAGAGAATTTG
TAAACAGAAAAAAATTATTTAAGACAAAGGAGACAATGTGCAGGAAAAGAAAAGGGTTGTGCAAC
AAAGCTAACTATGTAATACATACACTAGAATCTAAGAAACAATACAAGGATAAACCATACAACGG
ATCATGTACCGAGAACATATGCCAAGCCTTAGTGAAATAAGCTCAGCAAAAGGAAAAATAAATAA
ACATATGC
Found at i:124225272 original size:207 final size:201
Alignment explanation
Indices: 124224918--124225297 Score: 589
Period size: 207 Copynumber: 1.9 Consensus size: 201
124224908 ACAGGACCAA
* *
124224918 AAACACAAGAAAAACTATACCCAAGATAGAGAATAAAACCAGAGGAAAACTCATTTGGAATAGAA
1 AAACACAAGAAAAACTATACCCAAGATAGAGAATAAAACCAGAGGAAAACTCATTCGAAATAGAA
* * * *
124224983 AATATTGAAGAGATATTCAACTTAGAAGCTGCTTTGAATAGAGAACCATTACCAAATTAAACTTT
66 AATATTCAAAAAATATTCAACTTAAAAGCTGCTTTGAATAGAGAACCATTACCAAATTAAACTTT
124225048 CAAACTAAATTAAGAGGAAAACAATAGAAAGCAAACTGAATTGCTTTCACTTTTATACACAAAGT
131 CAAACTAAATTAAGAGGAAAACAATAGAAAGCAAACTGAATTGCTTTCACTTTTATACACAAAGT
124225113 ACATTG
196 ACATTG
* * *
124225119 AAACTCAAGAAAAGCTATTCCCAAGATAGAGAATAAAACCAGGAGAAAGGGAAAACTCATTCGAA
1 AAACACAAGAAAAACTATACCCAAGATAGAGAATAAAACC---AG--A-GGAAAACTCATTCGAA
**
124225184 ATAGAATCTATTCAAAAAATATTCAACTTAAAAGCTGCTTTGAATAGAGAACCATTACCAAATTA
60 ATAGAAAATATTCAAAAAATATTCAACTTAAAAGCTGCTTTGAATAGAGAACCATTACCAAATTA
* *
124225249 AACTTTCAAACTAAATTAAGAGGATAATAATAGAAAGCAAACTGAATTG
125 AACTTTCAAACTAAATTAAGAGGAAAACAATAGAAAGCAAACTGAATTG
124225298 AAACATGGGC
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
201 37 0.23
204 2 0.01
206 1 0.01
207 120 0.75
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.23
Consensus pattern (201 bp):
AAACACAAGAAAAACTATACCCAAGATAGAGAATAAAACCAGAGGAAAACTCATTCGAAATAGAA
AATATTCAAAAAATATTCAACTTAAAAGCTGCTTTGAATAGAGAACCATTACCAAATTAAACTTT
CAAACTAAATTAAGAGGAAAACAATAGAAAGCAAACTGAATTGCTTTCACTTTTATACACAAAGT
ACATTG
Found at i:124229929 original size:18 final size:19
Alignment explanation
Indices: 124229906--124229947 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
124229896 TTTGGGTATC
*
124229906 TAAAATTGATTTC-ATTAT
1 TAAAATTGATATCTATTAT
124229924 TAAAATTGATATCTATTAT
1 TAAAATTGATATCTATTAT
124229943 TAAAA
1 TAAAA
124229948 AAAATTACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
TAAAATTGATATCTATTAT
Found at i:124234949 original size:29 final size:29
Alignment explanation
Indices: 124234907--124234964 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
124234897 TTTTCCTCCC
124234907 TTTTTGTGGCCATCAAAGCTCATAGTTTG
1 TTTTTGTGGCCATCAAAGCTCATAGTTTG
124234936 TTTTTGTGGCCATCAAAGCTCATAGTTTG
1 TTTTTGTGGCCATCAAAGCTCATAGTTTG
124234965 GTAGACTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (29 bp):
TTTTTGTGGCCATCAAAGCTCATAGTTTG
Found at i:124235991 original size:31 final size:31
Alignment explanation
Indices: 124235953--124236016 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
124235943 AGCCTTCCTT
*
124235953 TGTCATACCTCTATGCCTTCGCTCATCATAG
1 TGTCATACCTCTATGCCTTAGCTCATCATAG
*
124235984 TGTCATACCTGTATGCCTTAGCTCATCATAG
1 TGTCATACCTCTATGCCTTAGCTCATCATAG
124236015 TG
1 TG
124236017 AGTAAACGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (31 bp):
TGTCATACCTCTATGCCTTAGCTCATCATAG
Found at i:124249272 original size:16 final size:16
Alignment explanation
Indices: 124249251--124249281 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
124249241 AGCATTATGA
*
124249251 TTAATGGCAGACAATT
1 TTAATGGCAAACAATT
124249267 TTAATGGCAAACAAT
1 TTAATGGCAAACAAT
124249282 CCAAAGTGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (16 bp):
TTAATGGCAAACAATT
Found at i:124252096 original size:21 final size:21
Alignment explanation
Indices: 124252070--124252110 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
124252060 AGACGAGCGA
* *
124252070 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
124252091 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
124252111 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:124254043 original size:16 final size:16
Alignment explanation
Indices: 124254022--124254052 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
124254012 AGCATTATGA
*
124254022 TTAATGGCAGACAATT
1 TTAATGGCAAACAATT
124254038 TTAATGGCAAACAAT
1 TTAATGGCAAACAAT
124254053 CCAAAGTGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (16 bp):
TTAATGGCAAACAATT
Found at i:124267255 original size:2 final size:2
Alignment explanation
Indices: 124267248--124267272 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
124267238 TCTTTCCTTT
124267248 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
124267273 CTTGGGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:124286625 original size:14 final size:14
Alignment explanation
Indices: 124286606--124286644 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
124286596 TTAGAAAAAT
*
124286606 AAATTATTTTTTAA
1 AAATTATTTTTCAA
* *
124286620 AAATTATTTTCCGA
1 AAATTATTTTTCAA
124286634 AAATTATTTTT
1 AAATTATTTTT
124286645 AGTGAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (14 bp):
AAATTATTTTTCAA
Found at i:124288782 original size:12 final size:12
Alignment explanation
Indices: 124288763--124288793 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
124288753 GTAAAGTTAC
124288763 CCATTGCTATTG
1 CCATTGCTATTG
*
124288775 CTATTGCTATTG
1 CCATTGCTATTG
124288787 CCATTGC
1 CCATTGC
124288794 CATGACATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (12 bp):
CCATTGCTATTG
Found at i:124290288 original size:14 final size:16
Alignment explanation
Indices: 124290268--124290308 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
124290258 AATCATTTGC
124290268 TAAAATAATTTT-ATA
1 TAAAATAATTTTAATA
*
124290283 -AAAATATTTTTAATA
1 TAAAATAATTTTAATA
124290298 TAAAAT-ATTTT
1 TAAAATAATTTT
124290309 TGTTCACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.45
15 7 0.32
16 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAAATAATTTTAATA
Found at i:124290304 original size:16 final size:15
Alignment explanation
Indices: 124290268--124290309 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
124290258 AATCATTTGC
*
124290268 TAAAATAATTTTATA
1 TAAAATATTTTTATA
124290283 -AAAATATTTTTAATA
1 TAAAATATTTTT-ATA
124290298 TAAAATATTTTT
1 TAAAATATTTTT
124290310 GTTCACCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAATATTTTTATA
Found at i:124293771 original size:15 final size:15
Alignment explanation
Indices: 124293751--124293782 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
124293741 CCTACCTGCG
124293751 TCCTGTTGTCTGTTA
1 TCCTGTTGTCTGTTA
124293766 TCCTGTTGTCTGTTA
1 TCCTGTTGTCTGTTA
124293781 TC
1 TC
124293783 TTTCACCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.22, G:0.19, T:0.53
Consensus pattern (15 bp):
TCCTGTTGTCTGTTA
Found at i:124295400 original size:18 final size:19
Alignment explanation
Indices: 124295373--124295411 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
124295363 TATTATAAAT
124295373 AATAAAAATTA-ATAATAA
1 AATAAAAATTATATAATAA
*
124295391 AATAAGAATTATATAATAA
1 AATAAAAATTATATAATAA
124295410 AA
1 AA
124295412 CAACAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (19 bp):
AATAAAAATTATATAATAA
Found at i:124311813 original size:4 final size:4
Alignment explanation
Indices: 124311804--124311844 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
124311794 ATGTTCCTTG
*
124311804 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT TTGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
124311845 GTCATACATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
ATGT
Found at i:124321803 original size:46 final size:46
Alignment explanation
Indices: 124321751--124322064 Score: 423
Period size: 46 Copynumber: 6.8 Consensus size: 46
124321741 AGTGTGCTCT
* *
124321751 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
124321797 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
124321843 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
124321889 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCACGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
124321935 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
124321981 ATGACGGGAAAATAAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
124322028 ATGATA-GAAAACGAGTAAAACCATAGTTAAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
124322065 TATGACATCA
Statistics
Matches: 243, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 204 0.84
47 39 0.16
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:124325330 original size:46 final size:45
Alignment explanation
Indices: 124325263--124325580 Score: 447
Period size: 46 Copynumber: 6.9 Consensus size: 45
124325253 TCTCTGAAAT
*
124325263 GAAATGTGTATGACCATGGTTGAAAGATACCATGGCAACATGATTA
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TA
124325309 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTA
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TA
* *
124325355 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATA
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
* *
124325400 TAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
1 -GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
*
124325446 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATA
1 -GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
*** *
124325492 TGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA
1 -GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
* * * * *
124325538 GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 G-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
124325581 TCAAAGATAA
Statistics
Matches: 252, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 3 0.01
46 249 0.99
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (45 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
Found at i:124333558 original size:42 final size:42
Alignment explanation
Indices: 124333493--124333581 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
124333483 TCCTAATTGG
*
124333493 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
* *
124333535 GAAAATAGTTCCCTTCTTTTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
124333577 TAAAA
1 GAAAA
124333582 ATATTCCTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:124335902 original size:5 final size:5
Alignment explanation
Indices: 124335892--124335916 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
124335882 TTAAAATATA
124335892 GAAAG GAAAG GAAAG GAAAG GAAAG
1 GAAAG GAAAG GAAAG GAAAG GAAAG
124335917 AAAATGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (5 bp):
GAAAG
Found at i:124341525 original size:43 final size:43
Alignment explanation
Indices: 124341477--124341569 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
124341467 ATTCTAGAAA
124341477 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
124341520 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
124341563 TATTTTC
1 TATTTTC
124341570 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:124343525 original size:20 final size:20
Alignment explanation
Indices: 124343500--124343540 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
124343490 TTGTCACATT
124343500 TATTAATGATCATACTCGAC
1 TATTAATGATCATACTCGAC
*
124343520 TATTAATGATCATACTTGAC
1 TATTAATGATCATACTCGAC
124343540 T
1 T
124343541 TTGTTGGGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (20 bp):
TATTAATGATCATACTCGAC
Found at i:124345841 original size:43 final size:42
Alignment explanation
Indices: 124345793--124345885 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 42
124345783 ATTCTAGAAA
*
124345793 TATTTTTATTTTATCTTTTAGTAGTTTCCTAGAATAAGGGAAC
1 TATTTTT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
124345836 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTT-TTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
124345879 TATTTTT
1 TATTTTT
124345886 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 1 0.02
43 44 0.96
44 1 0.02
ACGTcount: A:0.27, C:0.06, G:0.14, T:0.53
Consensus pattern (42 bp):
TATTTTTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:124355090 original size:52 final size:52
Alignment explanation
Indices: 124355012--124355115 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
124355002 CATCACAAGA
124355012 ATATTTGAGACCCTCTGGTATCTGCTCACAAGTTGACTAGCAAGGATCAATC
1 ATATTTGAGACCCTCTGGTATCTGCTCACAAGTTGACTAGCAAGGATCAATC
*
124355064 ATATTTGAGACCCTCTGGTCTCTGCTCACAAGTTGACTAGCAAGGATCAATC
1 ATATTTGAGACCCTCTGGTATCTGCTCACAAGTTGACTAGCAAGGATCAATC
124355116 TTTCTTTGTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (52 bp):
ATATTTGAGACCCTCTGGTATCTGCTCACAAGTTGACTAGCAAGGATCAATC
Found at i:124360323 original size:26 final size:26
Alignment explanation
Indices: 124360254--124360335 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
124360244 CACAGCTCAC
*
124360254 TTCTCGCTAAGCTTGCAGCTTTG-ACA
1 TTCTTGCTAAGCTTGCAGC-TTGCACA
* *
124360280 -TCTTGCTAATCTTACAGCTTGCACA
1 TTCTTGCTAAGCTTGCAGCTTGCACA
* *
124360305 TTTTTGCTGAGCTTGCAGCTTGCACA
1 TTCTTGCTAAGCTTGCAGCTTGCACA
124360331 TTCTT
1 TTCTT
124360336 TTCTTGAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
24 3 0.07
25 18 0.39
26 25 0.54
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (26 bp):
TTCTTGCTAAGCTTGCAGCTTGCACA
Found at i:124368289 original size:19 final size:19
Alignment explanation
Indices: 124368267--124368305 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
124368257 AGTAACTAGC
124368267 ATCTCCCCATTCCAATTTA
1 ATCTCCCCATTCCAATTTA
124368286 ATCTCCCCATTCCAATTTA
1 ATCTCCCCATTCCAATTTA
124368305 A
1 A
124368306 CATTAGTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (19 bp):
ATCTCCCCATTCCAATTTA
Found at i:124376874 original size:24 final size:24
Alignment explanation
Indices: 124376845--124376894 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
124376835 CAAAATTTCT
124376845 CATACTGATAGATAACAGAGTAAA
1 CATACTGATAGATAACAGAGTAAA
124376869 CATACTGATAGATAACAGAGTAAA
1 CATACTGATAGATAACAGAGTAAA
124376893 CA
1 CA
124376895 GGGTAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (24 bp):
CATACTGATAGATAACAGAGTAAA
Found at i:124379654 original size:84 final size:87
Alignment explanation
Indices: 124379536--124379709 Score: 221
Period size: 84 Copynumber: 2.0 Consensus size: 87
124379526 GTGAACTGTG
** * *
124379536 AAGCAATCTATTAACAGTTTAAACCTCAGCTAAACAACTCTTCTACCTATAAAGAACATTT-AC-
1 AAGCAATCTATTAACAGTTTAAACCTCAGCTAAACAACTCTTCTACAGACAAAAAACATTTGACT
*
124379599 TATACCATTGCAATTATTACTC
66 TATACCATTGCAATTATTACCC
* * *
124379621 AAGCAATTTATTAACA-TTCT-AACCTCAGTTAAACAAGTCTTCTACAGACAAAAAACATTTGAC
1 AAGCAATCTATTAACAGTT-TAAACCTCAGCTAAACAACTCTTCTACAGACAAAAAACATTTGAC
* *
124379684 TTTTATCATTGCAATTATTACCC
65 TTATACCATTGCAATTATTACCC
124379707 AAG
1 AAG
124379710 AACAAGGCCT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
84 36 0.47
85 18 0.24
86 22 0.29
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (87 bp):
AAGCAATCTATTAACAGTTTAAACCTCAGCTAAACAACTCTTCTACAGACAAAAAACATTTGACT
TATACCATTGCAATTATTACCC
Found at i:124385113 original size:12 final size:12
Alignment explanation
Indices: 124385096--124385125 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
124385086 GGTGGTAGAC
124385096 AATGGGAGGAAA
1 AATGGGAGGAAA
124385108 AATGGGAGGAAA
1 AATGGGAGGAAA
124385120 AATGGG
1 AATGGG
124385126 GCAAGTAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.43, T:0.10
Consensus pattern (12 bp):
AATGGGAGGAAA
Found at i:124385185 original size:18 final size:18
Alignment explanation
Indices: 124385162--124385226 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
124385152 AGGTTTTTTA
124385162 GTTTTTTTTTTTTGTTAG
1 GTTTTTTTTTTTTGTTAG
* *
124385180 GTTTTTCTTTTTTCTT--
1 GTTTTTTTTTTTTGTTAG
* **
124385196 -CTTTTTTTTTGGGTTAG
1 GTTTTTTTTTTTTGTTAG
124385213 GTTTTTCTTTTTTT
1 GTTTTT-TTTTTTT
124385227 CTTTTTTTTT
Statistics
Matches: 33, Mismatches: 10, Indels: 7
0.66 0.20 0.14
Matches are distributed among these distances:
15 10 0.30
18 18 0.55
19 5 0.15
ACGTcount: A:0.03, C:0.06, G:0.14, T:0.77
Consensus pattern (18 bp):
GTTTTTTTTTTTTGTTAG
Found at i:124385201 original size:33 final size:31
Alignment explanation
Indices: 124385164--124385250 Score: 129
Period size: 33 Copynumber: 2.7 Consensus size: 31
124385154 GTTTTTTAGT
*
124385164 TTTTTTTTTTTGTTAGGTTTTTCTTTTTTCTTC
1 TTTTTTTTTTGGTTAGGTTTTTC-TTTTT-TTC
*
124385197 TTTTTTTTTGGGTTAGGTTTTTCTTTTTTTC
1 TTTTTTTTTTGGTTAGGTTTTTCTTTTTTTC
124385228 TTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTT-GGTTAGGTTTTT
124385251 TTGGGAGGGC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
31 12 0.24
32 17 0.34
33 21 0.42
ACGTcount: A:0.03, C:0.06, G:0.15, T:0.76
Consensus pattern (31 bp):
TTTTTTTTTTGGTTAGGTTTTTCTTTTTTTC
Found at i:124385251 original size:33 final size:32
Alignment explanation
Indices: 124385163--124385250 Score: 135
Period size: 32 Copynumber: 2.8 Consensus size: 32
124385153 GGTTTTTTAG
*
124385163 TTTTTTTTTTT-TGTTAGGTTTTTCTTTTTTC
1 TTTTTTTTTTTGGGTTAGGTTTTTCTTTTTTC
124385194 TTCTTTTTTTTTGGGTTAGGTTTTTCTTTTTT-
1 TT-TTTTTTTTTGGGTTAGGTTTTTCTTTTTTC
124385226 TCTTTTTTTTTTGGGTTAGGTTTTT
1 T-TTTTTTTTTTGGGTTAGGTTTTT
124385251 TTGGGAGGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
31 2 0.04
32 32 0.60
33 19 0.36
ACGTcount: A:0.03, C:0.06, G:0.15, T:0.76
Consensus pattern (32 bp):
TTTTTTTTTTTGGGTTAGGTTTTTCTTTTTTC
Found at i:124386010 original size:88 final size:83
Alignment explanation
Indices: 124385905--124386478 Score: 314
Period size: 88 Copynumber: 6.9 Consensus size: 83
124385895 AACAGACATT
** * *
124385905 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
124385970 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
124385993 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
124386057 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
124386076 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
124386137 ATGAGTTGAATTTTTTTGAAAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * * *
124386160 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGCCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
124386225 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * *
124386248 AAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
124386313 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
124386331 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
124386391 GTTGATTTTTT-------TG
64 GTTGATTTTTTGAAAAACTG
* ** * * *
124386404 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
124386469 TCGATTTTTT
65 TTGATTTTTT
124386479 TTTTGAAAGG
Statistics
Matches: 380, Mismatches: 70, Indels: 83
0.71 0.13 0.16
Matches are distributed among these distances:
72 1 0.00
75 2 0.01
76 3 0.01
77 52 0.14
78 6 0.02
79 47 0.12
80 9 0.02
81 2 0.01
82 14 0.04
83 41 0.11
84 44 0.12
85 12 0.03
86 2 0.01
87 24 0.06
88 115 0.30
90 6 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:124386109 original size:30 final size:30
Alignment explanation
Indices: 124386073--124386134 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
124386063 TTTTGAAAAA
124386073 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
124386103 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
124386133 CA
1 CA
124386135 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:124386254 original size:14 final size:14
Alignment explanation
Indices: 124386231--124386265 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
124386221 TGAGTTGATT
124386231 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
124386244 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
124386258 TTTGAAAA
1 TTTGAAAA
124386266 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:124386373 original size:79 final size:76
Alignment explanation
Indices: 124386244--124386479 Score: 251
Period size: 77 Copynumber: 3.0 Consensus size: 76
124386234 GAAAACAGAA
** ** * *
124386244 TTTGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAG-CGCGTGAGCCAAGGCTCAACTCAC-TCTCGCAAT
*
124386308 GTGAGTTGATTTT
64 ATGAGTTGATTTT
* * * * * *
124386321 TTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCA
1 TTTGAAAAACAGAAATTG--AAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCA-CTCTCGCA
124386385 ATATGAGTTGATTTT
62 ATATGAGTTGATTTT
* *
124386400 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCA-CTCTCGCAATA
*
124386465 TGAGTCGATTTT
65 TGAGTTGATTTT
124386477 TTT
1 TTT
124386480 TTTGAAAGGC
Statistics
Matches: 133, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
76 2 0.02
77 66 0.50
79 62 0.47
80 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (76 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACTCTCGCAATAT
GAGTTGATTTT
Found at i:124386480 original size:79 final size:77
Alignment explanation
Indices: 124386285--124386501 Score: 249
Period size: 79 Copynumber: 2.7 Consensus size: 77
124386275 ATGTGACCCG
* * * *
124386285 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
124386350 CAGTGTGTGATCTGA
63 CAGCGCGTGAGCTCA
*
124386365 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
124386429 GCGCGTGAGC-CA
65 GCGCGTGAGCTCA
* *
124386441 AGGCTCAACTCATCTCTCGCAATATGAGTCGATTTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTGAAAA
124386502 ACGGAAATTG
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
76 2 0.02
77 45 0.38
79 46 0.38
80 27 0.22
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (77 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAG
CGCGTGAGCTCA
Found at i:124386540 original size:250 final size:245
Alignment explanation
Indices: 124385905--124386723 Score: 905
Period size: 255 Copynumber: 3.3 Consensus size: 245
124385895 AACAGACATT
*
124385905 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATATGAG
** * * *
124385970 TTGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGG
66 TTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCT-GAGG
* * *
124386033 TTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGACTCAACTC
130 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-AAT-ACCTC
* * *
124386095 AACTCTCGCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
193 AA-TGT-G-TG--ATCT--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
* *
124386155 AAAAAAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGCCTCAACTCA-CTTCTCGCAA
1 -----AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATC-TCTCGCAA
*
124386219 TATGAGTTGA-TTTTTGAAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACC
60 TATGAGTTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACC
* * * * *
124386283 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
125 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATAC
*
124386348 CTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
190 CTCAATGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
124386404 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATATGAG
* * * ** * *
124386469 TCGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCT
66 TTGA----TTTTTTGAAA-ACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCT
* * * * *
124386534 GAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTTTG-ACAACAGAAATTG--AAATTA
126 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAACAGAAATTGAAAAAATA
* * *
124386596 CCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
189 CCTCAATGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * * ** * *
124386651 AAAAACAGAAATTGAAAATACCTCA--GCATG-TCTTGAGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCATCTCTCGCAATATGA
124386713 GTTGATTTTTT
65 GTTGATTTTTT
124386724 TTTTAAAAAA
Statistics
Matches: 494, Mismatches: 53, Indels: 48
0.83 0.09 0.08
Matches are distributed among these distances:
241 6 0.01
244 64 0.13
245 34 0.07
247 65 0.13
249 32 0.06
250 97 0.20
251 12 0.02
252 9 0.02
253 1 0.00
254 8 0.02
255 137 0.28
256 6 0.01
257 19 0.04
258 4 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (245 bp):
AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATACCTCAAT
GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:124386566 original size:171 final size:169
Alignment explanation
Indices: 124386341--124386649 Score: 424
Period size: 171 Copynumber: 1.8 Consensus size: 169
124386331 ATAAATTGAA
* * * *
124386341 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTTGA
* * *
124386405 AAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCATCTCTCGCAATATGAG
66 AA-ACAGAAATTGAAAATACCTCA--ACGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAG
124386469 TCGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 TCGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * *
124386512 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTTTG
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGA-TTTTTTTTG
* * * * *
124386577 ACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
65 AAAACAGAAATTGAAAATACCTCAACGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCG
124386642 ATTTTTTT
130 ATTTTTTT
124386650 GAAAAACAGA
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
169 2 0.02
170 41 0.34
171 48 0.40
172 19 0.16
173 10 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (169 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTTGA
AAACAGAAATTGAAAATACCTCAACGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGA
TTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:124386569 original size:94 final size:92
Alignment explanation
Indices: 124386401--124386592 Score: 235
Period size: 94 Copynumber: 2.1 Consensus size: 92
124386391 GTTGATTTTT
* * * * *
124386401 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCATCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
124386466 GAGTCGATTTTTTTTTTGA-AAGGCAGAAA
66 GAGTCGA-TTTTTTTTTGACAA--CAGAAA
* * * * *
124386495 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
*
124386559 CGAGTTGATTTTTTTTTGACAACAGAAA
65 CGAGTCGATTTTTTTTTGACAACAGAAA
124386587 TTGAAA
1 TTGAAA
124386593 TTACCTCAAC
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
92 12 0.14
93 13 0.15
94 60 0.71
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (92 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTCGATTTTTTTTTGACAACAGAAA
Found at i:124386691 original size:75 final size:76
Alignment explanation
Indices: 124386495--124386847 Score: 430
Period size: 78 Copynumber: 4.7 Consensus size: 76
124386485 AAGGCAGAAA
* * * * *
124386495 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCACCTCTCACAATAT
124386560 GAGTTGATTTTTTT
64 GAGTTGA-TTTTTT
* * * * *
124386574 TTG-ACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
124386638 GTTGA-TTTTT
66 GTTGATTTTTT
* **
124386648 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
124386713 GTTGATTTTTTTT
66 GTTGA--TTTTTT
* * * * **
124386726 TTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAATTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
*
124386791 GTTGA---ATT
66 GTTGATTTTTT
*
124386799 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
124386848 TTTTGAACAG
Statistics
Matches: 244, Mismatches: 26, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
72 42 0.17
73 4 0.02
74 8 0.03
75 58 0.24
76 33 0.14
78 96 0.39
79 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTT
Found at i:124386724 original size:153 final size:149
Alignment explanation
Indices: 124386495--124386850 Score: 453
Period size: 153 Copynumber: 2.4 Consensus size: 149
124386485 AAGGCAGAAA
* * * ***
124386495 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAC
** * * * * * *
124386560 GAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACC
64 GAGTTGATTTTTTTTAAAAAAAAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTAAAC
* *
124386625 TCTCGCAATATGAGTTGATTTTT
129 TCTCACAATATGAGTTGA--ATT
* *
124386648 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* * *
124386713 GTTGATTTTTTTTTTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAAT
66 GTTGA--TTTTTTTTAAAAAAAAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTAAAC
124386778 TCTCACAATATGAGTTGAATT
129 TCTCACAATATGAGTTGAATT
*
124386799 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
124386851 TGAACAGGAA
Statistics
Matches: 178, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
150 47 0.26
151 36 0.20
153 95 0.53
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (149 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTTAAAAAAAAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTAAACTC
TCACAATATGAGTTGAATT
Found at i:124386870 original size:49 final size:49
Alignment explanation
Indices: 124386804--124386899 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
124386794 GAATTTTGAA
*
124386804 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
*
124386853 AACAGGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
124386900 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:124386952 original size:121 final size:121
Alignment explanation
Indices: 124386738--124386971 Score: 405
Period size: 121 Copynumber: 1.9 Consensus size: 121
124386728 AAAAAAAAGA
*
124386738 AATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAATTCTCACAATATGAGTTGAATTTTGA
1 AATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAAATTCTCACAATATGAGTTGAATTTTGA
*
124386803 AAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAACAGG
66 AAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAACAGG
* * * * *
124386859 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
1 AATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAAATTCTCACAATATGAGTTGAATTTTGA
124386924 AAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
66 AAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
124386972 CTTGCAATAT
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 106 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (121 bp):
AATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAAATTCTCACAATATGAGTTGAATTTTGA
AAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAACAGG
Found at i:124386962 original size:72 final size:72
Alignment explanation
Indices: 124386853--124387137 Score: 381
Period size: 72 Copynumber: 4.0 Consensus size: 72
124386843 ACTCATTTTG
*
124386853 AACAGGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
124386918 TTTTGAA
66 TTTTGAA
* * *
124386925 AACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
***
124386990 TTTTTTT
66 TTTTGAA
**** * * *
124386997 TTTTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTCAT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
124387062 TTTTGAA
66 TTTTGAA
* ** * ** *
124387069 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
124387134 TTTT
66 TTTT
124387138 TTTTTGAAAG
Statistics
Matches: 181, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 181 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:124387007 original size:193 final size:195
Alignment explanation
Indices: 124386654--124387043 Score: 532
Period size: 193 Copynumber: 2.0 Consensus size: 195
124386644 TTTTTTGAAA
*
124386654 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA-
*
124386719 TTTTTTTTTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAATTCTCAC
65 ---TATTTTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAATTCTCAC
*
124386784 AATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCAT
127 AATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
124386849 TTTG
192 TTTG
* * * *
124386853 AACAGGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
* * * * * * **
124386917 ATTTTGAAAACAA-AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTTGCAATA
66 ATTTTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAATTCTCACAATA
*******
124386981 TGAGTTGAATTTTTTTTTTTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
131 TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
124387044 CTCACAATAT
Statistics
Matches: 169, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
193 100 0.59
194 10 0.06
199 59 0.35
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (195 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
ATTTTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAATTCTCACAATA
TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:124387074 original size:265 final size:267
Alignment explanation
Indices: 124386579--124387112 Score: 786
Period size: 265 Copynumber: 2.0 Consensus size: 267
124386569 TTTTTTTGAC
124386579 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
124386644 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAT
65 TATTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAT
*
124386709 ATGAGTTGATTTTTTTTTTAAAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACT
130 ATGAGTTGATTTTTTTTTT------AAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACT
* **
124386774 AAATTCTCACAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGG
189 AAATTCTCACAATATGAGTTCAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGG
124386839 CTCAACTCATTTTG
254 CTCAACTCATTTTG
* * **
124386853 AACAGGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * **
124386917 ATTTTG-AAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTTGCAATA
66 ATTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATA
* * * * *
124386981 TGAGTTGAATTTTTTTTTT-TGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
131 TGAGTTG-ATTTTTTTTTTAAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAAATTC
* *
124387045 TCACAATATGAGTTCATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTTAAC
195 TCACAATATGAGTTCAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
124387110 TCA
260 TCA
124387113 CCTCTCGCAA
Statistics
Matches: 238, Mismatches: 21, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
265 102 0.43
271 60 0.25
272 16 0.07
274 60 0.25
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (267 bp):
AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
ATTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATA
TGAGTTGATTTTTTTTTTAAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAAATTCT
CACAATATGAGTTCAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
CATTTTG
Found at i:124387123 original size:144 final size:142
Alignment explanation
Indices: 124386859--124387146 Score: 468
Period size: 144 Copynumber: 2.0 Consensus size: 142
124386849 TTTGAACAGG
* *
124386859 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
1 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTCAATTTTGA
** ** *
124386924 AAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGA
66 AAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-
124386989 ATTTTTTTTTTTGA
130 A-TTTTTTTTTTGA
*
124387003 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTCATTTTTGA
1 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTCAATTTTGA
* *
124387068 AAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGA
66 AAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
124387133 TTTTTTTTTTGA
131 TTTTTTTTTTGA
124387145 AA
1 AA
124387147 GGCAGAAATT
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
142 14 0.10
143 1 0.01
144 119 0.89
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (142 bp):
AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTCAATTTTGA
AAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTTTGA
Found at i:124389326 original size:32 final size:32
Alignment explanation
Indices: 124389284--124389346 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
124389274 ATTTTATTAC
124389284 TATTTAACCTACGAATTTAGCCTATAAATAGT
1 TATTTAACCTACGAATTTAGCCTATAAATAGT
* *
124389316 TATTTGACCTACGAATTTAGTCTATAAATAG
1 TATTTAACCTACGAATTTAGCCTATAAATAG
124389347 GCTTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (32 bp):
TATTTAACCTACGAATTTAGCCTATAAATAGT
Found at i:124392764 original size:16 final size:16
Alignment explanation
Indices: 124392743--124392802 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
124392733 CATTAAGCCC
124392743 CCCAAAAAAAACCTAA
1 CCCAAAAAAAACCTAA
***
124392759 CCCAAAAAAAAAAGAA
1 CCCAAAAAAAACCTAA
***
124392775 GAAAAAGAAAAACCTAA
1 CCCAAA-AAAAACCTAA
124392792 CCCAAAAAAAA
1 CCCAAAAAAAA
124392803 AAAGAAGAAA
Statistics
Matches: 31, Mismatches: 12, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
16 21 0.68
17 10 0.32
ACGTcount: A:0.70, C:0.22, G:0.05, T:0.03
Consensus pattern (16 bp):
CCCAAAAAAAACCTAA
Found at i:124392768 original size:17 final size:17
Alignment explanation
Indices: 124392746--124392803 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
124392736 TAAGCCCCCC
124392746 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACCCA
** **
124392763 AAAAAAAA-AGAA-GAA
1 AAAAAAAACCTAACCCA
124392778 AAAGAAAAACCTAACCCA
1 AAA-AAAAACCTAACCCA
124392796 AAAAAAAA
1 AAAAAAAA
124392804 AAGAAGAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
15 4 0.13
16 7 0.23
17 15 0.50
18 4 0.13
ACGTcount: A:0.74, C:0.17, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAAAACCTAACCCA
Found at i:124392791 original size:33 final size:34
Alignment explanation
Indices: 124392749--124392834 Score: 142
Period size: 35 Copynumber: 2.6 Consensus size: 34
124392739 GCCCCCCAAA
124392749 AAAAACCTAACCCAAAAAAAAAAGAAG-AAAAAG
1 AAAAACCTAACCCAAAAAAAAAAGAAGAAAAAAG
124392782 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCC-AAAAAAAAAAGAAGAAAAAAG
124392817 AAAAACCTAA--CAAAAAAA
1 AAAAACCTAACCCAAAAAAA
124392835 CTAAAAAAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
32 7 0.14
33 14 0.27
34 14 0.27
35 16 0.31
ACGTcount: A:0.74, C:0.15, G:0.07, T:0.03
Consensus pattern (34 bp):
AAAAACCTAACCCAAAAAAAAAAGAAGAAAAAAG
Found at i:124392801 original size:35 final size:35
Alignment explanation
Indices: 124392749--124392834 Score: 144
Period size: 33 Copynumber: 2.6 Consensus size: 35
124392739 GCCCCCCAAA
124392749 AAAAACCTAACCC-AAAAAAAAAAGAAG-AAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
124392782 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
124392817 AAAAACCTAA--CAAAAAAA
1 AAAAACCTAACCCAAAAAAA
124392835 CTAAAAAAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
33 21 0.41
34 14 0.27
35 16 0.31
ACGTcount: A:0.74, C:0.15, G:0.07, T:0.03
Consensus pattern (35 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAG
Found at i:124392831 original size:18 final size:18
Alignment explanation
Indices: 124392776--124392833 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
124392766 AAAAAAGAAG
124392776 AAAAAGAAAAACCTAACCCA
1 AAAAAGAAAAACCTAA--CA
* *
124392796 AAAAA-AAAAA--GAAGA
1 AAAAAGAAAAACCTAACA
124392811 AAAAAGAAAAACCTAACA
1 AAAAAGAAAAACCTAACA
124392829 AAAAA
1 AAAAA
124392834 ACTAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
15 6 0.19
16 5 0.16
17 2 0.06
18 8 0.26
19 5 0.16
20 5 0.16
ACGTcount: A:0.76, C:0.14, G:0.07, T:0.03
Consensus pattern (18 bp):
AAAAAGAAAAACCTAACA
Found at i:124392890 original size:12 final size:12
Alignment explanation
Indices: 124392873--124392902 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
124392863 TCCCACTTGC
124392873 CCCATTTTTCCT
1 CCCATTTTTCCT
124392885 CCCATTTTTCCT
1 CCCATTTTTCCT
124392897 CCCATT
1 CCCATT
124392903 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:124400623 original size:72 final size:72
Alignment explanation
Indices: 124400502--124400696 Score: 241
Period size: 72 Copynumber: 2.7 Consensus size: 72
124400492 GAGTTAAGCC
* * * * *
124400502 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGACACGA
124400566 TGAGGTA
66 TGAGGTA
** *
124400573 TTTTCAATTTTTGTATTTT-AATTTCAACTTATATTGCGAGAGCTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTTTGT-TTTTCAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGACACG
124400637 ATGAGGTA
65 ATGAGGTA
* * * * *
124400645 ATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTCAATTTTTGTTTTTCAA-AATCAACTCATATTGCGAGAGCTGAGTTGA
124400697 ACCTTTTAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
71 7 0.07
72 68 0.65
73 29 0.28
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (72 bp):
TTTTCAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCAGGACACGA
TGAGGTA
Found at i:124400870 original size:88 final size:88
Alignment explanation
Indices: 124400721--124401055 Score: 465
Period size: 88 Copynumber: 3.8 Consensus size: 88
124400711 ACTTTTTCAA
* *
124400721 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCAATTTCTGT
*
124400786 CTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
*
124400809 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCAATTTCTGT
124400874 TTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
* * *
124400897 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-C-GAGGTATTTTCAATTTCT
* * ** *
124400962 GTTTTTCAAT-TTCTGTCTTTCAAAAAAA
64 G-TTTTCATTATTATGT-TTT--TGAAAG
* * * *
124400990 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCAATTTCTGT
124401055 T
66 T
124401056 GTCAAAAAAA
Statistics
Matches: 223, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
88 127 0.57
89 1 0.00
90 25 0.11
91 27 0.12
93 43 0.19
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (88 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTTGAAAG
Found at i:124400969 original size:14 final size:14
Alignment explanation
Indices: 124400950--124400984 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
124400940 CGCTGAGGTA
124400950 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
124400964 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
124400978 CTTTCAA
1 TTTTCAA
124400985 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:124401123 original size:76 final size:74
Alignment explanation
Indices: 124400964--124401697 Score: 333
Period size: 77 Copynumber: 9.3 Consensus size: 74
124400954 CAATTTCCGT
*
124400964 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGT-TTTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
*
124401029 CACGCTGAGGTA
63 CACGCCGAGGTA
* * * * *
124401041 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCTAGTGGCGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--AC
124401106 ACGCCGAGGTA
64 ACGCCGAGGTA
* * * * * *
124401117 TTTTCAATTTCCGTTTTCAATTTCTGCCTTTCAAAAA--AAATCA-ACT-CATATTGCGAGAGGT
1 TTTTCAATTTCTGTTTTCAA------------AAAAATCAACTCATATTGC-GA--GAG-G---C
*
124401178 GAGTTGAGCCTCAGGACACGCTGAGGTA
47 GAGTTGAGCCTCAGGACACGCCGAGGTA
* * * * * *
124401206 ATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG--GAC
124401271 ACGCCGAGGTA
64 ACGCCGAGGTA
* * * *
124401282 TTTTCAATTTCCAT-TTTTCAATTTCTGCCTTTCAAAAA--AAATCA-ACT-CATATTGCGAGAG
1 TTTTCAATTT-C-TGTTTTCAA------------AAAAATCAACTCATATTGC-GA--GAG-G--
* * *
124401342 GTGAGTTGAGCCTCGGGACACGCTGAGGTA
46 -CGAGTTGAGCCTCAGGACACGCCGAGGTA
* * *** *
124401372 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACAC
**
124401435 GTTGAGGTA
66 GCCGAGGTA
* * * *
124401444 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCA
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-ACA
*
124401508 CGCGCTGAGCTA
65 CGC-C-GAGGTA
* * * * *
124401520 TTTTTAATTTCTATCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GATC
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-C
*
124401584 ACACACTGAGGTA
64 ACGC-C-GAGGTA
* * * * * *
124401597 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-
* *
124401662 CACATGTCGAGGTA
62 -ACACGCCGAGGTA
**
124401676 TTTTCAAAATCTGTTTTTCAAA
1 TTTTCAATTTCTG-TTTTCAAA
124401698 TTCTGTTTTC
Statistics
Matches: 504, Mismatches: 85, Indels: 136
0.70 0.12 0.19
Matches are distributed among these distances:
72 43 0.09
73 1 0.00
74 91 0.18
75 4 0.01
76 71 0.14
77 99 0.20
78 6 0.01
79 61 0.12
80 6 0.01
81 3 0.01
82 1 0.00
84 1 0.00
85 5 0.01
86 7 0.01
87 6 0.01
88 9 0.02
89 40 0.08
90 21 0.04
91 15 0.03
92 14 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACAC
GCCGAGGTA
Found at i:124401211 original size:89 final size:88
Alignment explanation
Indices: 124401042--124401225 Score: 246
Period size: 89 Copynumber: 2.1 Consensus size: 88
124401032 GCTGAGGTAA
* * *
124401042 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCTAGTGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACA
*
124401107 CGCCGAGGTATTTTCAATTTCCGT
65 CGCCGAGGTAATTTCAATTTCCGT
*
124401131 TTTCAATTTCTGCCTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTG--TTGTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
* *
124401194 CACGCTGAGGTAATTTCAATTTCTGT
63 CACGCCGAGGTAATTTCAATTTCCGT
*
124401220 TGTCAA
1 TTTCAA
124401226 AAAAGTCAAC
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
89 41 0.49
90 2 0.02
91 41 0.49
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (88 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACAC
GCCGAGGTAATTTCAATTTCCGT
Found at i:124401220 original size:165 final size:165
Alignment explanation
Indices: 124400897--124401600 Score: 908
Period size: 165 Copynumber: 4.3 Consensus size: 165
124400887 TTTTTGAAAG
*
124400897 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
*
124400962 GTTTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 G-TTTTCAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
124401027 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
129 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* *
124401064 AATCAACTCGTATTGCTAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
124401129 GTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
66 GTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
124401194 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
131 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * *
124401229 AGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
124401294 ATTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
66 -GTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
124401359 ACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAA
130 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * *** * **
124401393 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGG-----T--A-----
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * *
124401444 -TTTTCAATTTCTG-TTTTC-AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGC
66 GTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * * * * *
124401505 TCACGCGCTGAGCTATTTTTAATTTCTATCTCTCAAAAA
130 --ACACGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAA
* * * * * *
124401544 AATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTT
124401601 TTCAATTTAT
Statistics
Matches: 486, Mismatches: 37, Indels: 37
0.87 0.07 0.07
Matches are distributed among these distances:
145 2 0.00
146 38 0.08
147 4 0.01
148 35 0.07
149 3 0.01
151 35 0.07
153 9 0.02
155 1 0.00
157 1 0.00
158 1 0.00
162 9 0.02
164 35 0.07
165 140 0.29
166 110 0.23
167 63 0.13
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (165 bp):
AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
Found at i:124401377 original size:90 final size:90
Alignment explanation
Indices: 124401207--124401382 Score: 250
Period size: 92 Copynumber: 2.0 Consensus size: 90
124401197 GCTGAGGTAA
* * *
124401207 TTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGCACA
*
124401272 CGCCGAGGTATTTTCAATTTCCATT
66 CGCCGAGGTAATTTCAATTTCCATT
*
124401297 TTTCAATTTCTGCCTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GG
1 TTTCAATTTCTG--TTGTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGC
*
124401359 ACACGCTGAGGTAATTTCAATTTC
63 ACACGCCGAGGTAATTTCAATTTC
124401383 TGTTTTCAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
90 34 0.44
91 3 0.04
92 40 0.52
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGCACA
CGCCGAGGTAATTTCAATTTCCATT
Found at i:124401434 original size:72 final size:73
Alignment explanation
Indices: 124401296--124401657 Score: 368
Period size: 72 Copynumber: 4.8 Consensus size: 73
124401286 CAATTTCCAT
* ***
124401296 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTCAATTTCTG-TTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACAC
124401361 ACGCTGAGGTA
63 ACGCTGAGGTA
* * ** *
124401372 ATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACG
*
124401436 TTGAGGTA
66 CTGAGGTA
* *
124401444 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCA
1 TTTTCAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAACA
* *
124401508 CGCGCTGAGCTA
62 CACGCTGAGGTA
* * * *
124401520 TTTTTAATTTCTATCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-CA
*
124401585 CACACTGAGGTA
62 CACGCTGAGGTA
* * * *
124401597 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 --TTTTCAATTTCT-GTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
124401658 GGGTCACATG
Statistics
Matches: 240, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
72 65 0.27
74 33 0.14
75 5 0.02
76 35 0.15
77 51 0.21
79 50 0.21
80 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACG
CTGAGGTA
Found at i:124401593 original size:77 final size:76
Alignment explanation
Indices: 124401296--124401822 Score: 415
Period size: 77 Copynumber: 6.7 Consensus size: 76
124401286 CAATTTCCAT
** **
124401296 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GG
1 TTTTCAATTTCT-ATTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
124401359 ACACGCTGAGGTA
64 ACACGCTGAGGTA
* * * ** *
124401372 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GAC
1 TTTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
*
124401433 ACGTTGAGGTA
66 ACGCTGAGGTA
* * ** *
124401444 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* *
124401509 GCGCTGAGCTA
66 ACGCTGAGGTA
* * *
124401520 TTTTTAATTTCTATCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
124401585 CACACTGAGGTA
65 CACGCTGAGGTA
* * * * *
124401597 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTA-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
*
124401662 CACATG-TCGAGGTA
63 CACACGCT-GAGGTA
** * *
124401676 TTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCT-ATTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * ** *
124401741 G-CTTGGCTCACGTGCTGAGCTA
54 GCCTCAGATCACACGCTGAGGTA
*
124401763 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAA-TCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTC-----TATTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
124401823 TTTTTAATTT
Statistics
Matches: 367, Mismatches: 53, Indels: 57
0.77 0.11 0.12
Matches are distributed among these distances:
72 65 0.18
74 33 0.09
75 4 0.01
76 33 0.09
77 67 0.18
78 3 0.01
79 63 0.17
80 29 0.08
81 4 0.01
87 24 0.07
88 33 0.09
90 2 0.01
91 6 0.02
92 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
TTTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
ACGCTGAGGTA
Found at i:124401652 original size:79 final size:76
Alignment explanation
Indices: 124401296--124402032 Score: 449
Period size: 88 Copynumber: 9.2 Consensus size: 76
124401286 CAATTTCCAT
* **
124401296 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GG
1 TTTTCAATTTCTG-TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
124401359 ACACGCTGAGGTA
64 ACACGCTGAGGTA
* * ** *
124401372 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
*
124401433 ACGTTGAGGTA
66 ACGCTGAGGTA
* ** *
124401444 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* *
124401509 GCGCTGAGCTA
66 ACGCTGAGGTA
* * * *
124401520 TTTTTAATTTCTATCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
124401585 CACACTGAGGTA
65 CACGCTGAGGTA
* * * * * *
124401597 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
*
124401662 CACATG-TCGAGGTA
63 CACACGCT-GAGGTA
** *
124401676 TTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTG-TTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * ** *
124401741 G-CTTGGCTCACGTGCTGAGCTA
54 GCCTCAGATCACACGCTGAGGTA
*
124401763 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAA-TCATATTGCGAGAGGTGAGTTGAGCTTTT
1 TTTTCAATTTCTG-----TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CT
* * * * *
124401827 TA-ATTTCTGCGAGAGTTGAGTTGA
58 CAGA--TC-AC-A-CGCTGAGGT-A
* *
124401851 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 -T-TTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGA
**
124401913 TCACA-TATCGAGGTA
62 TCACACGCT-GAGGTA
**
124401928 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTG-TTTTC------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * * *
124401993 GCCTTGGCTCACGCGCTGAGCTA
54 GCCTCAGATCACACGCTGAGGTA
124402016 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
124402033 TAATGTCTGT
Statistics
Matches: 520, Mismatches: 82, Indels: 107
0.73 0.12 0.15
Matches are distributed among these distances:
72 65 0.12
74 33 0.06
75 18 0.03
76 35 0.07
77 69 0.13
78 7 0.01
79 63 0.12
80 30 0.06
81 6 0.01
82 1 0.00
83 7 0.01
84 31 0.06
85 1 0.00
86 6 0.01
87 37 0.07
88 90 0.17
89 2 0.00
90 13 0.03
91 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
ACGCTGAGGTA
Found at i:124401695 original size:14 final size:13
Alignment explanation
Indices: 124401676--124401711 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
124401666 TGTCGAGGTA
124401676 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
124401689 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
124401703 TTTTCAAAA
1 TTTTCAAAA
124401712 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:124401840 original size:30 final size:30
Alignment explanation
Indices: 124401804--124401865 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
124401794 TCAATCATAT
124401804 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
124401834 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
124401864 TG
1 TG
124401866 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:124401918 original size:252 final size:248
Alignment explanation
Indices: 124401444--124402033 Score: 761
Period size: 252 Copynumber: 2.4 Consensus size: 248
124401434 CGTTGAGGTA
* *
124401444 TTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAAATTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
* *
124401509 GCGCTGAGCTATTTTTAATTTC----TATCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
65 GCGCTGAGCTATTTTCAATTTCTGTTTTTCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
*
124401570 TTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACA
130 TTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACA
* * ** * *
124401635 TTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGT
194 TTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
*
124401690 TTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * *
124401753 TGCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAA-TCATATTGCGAGAGGTGAG
66 CGCTGAGCTATTTTCAATTTCTGTTTTTCTCTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
* * * * * * *
124401817 TTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATC
130 TTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATC
*
124401879 AACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
186 AACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
* **
124401942 TTTTCAAGTTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
124402006 CGCTGAGCTATTTTCAATTTCTGTTTTT
66 CGCTGAGCTATTTTCAATTTCTGTTTTT
124402034 AATGTCTGTT
Statistics
Matches: 300, Mismatches: 28, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
243 30 0.10
244 32 0.11
246 17 0.06
247 37 0.12
248 5 0.02
249 3 0.01
250 2 0.01
251 5 0.02
252 108 0.36
253 43 0.14
254 13 0.04
255 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
CGCTGAGCTATTTTCAATTTCTGTTTTTCTCTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATT
GCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
Found at i:124402706 original size:16 final size:16
Alignment explanation
Indices: 124402685--124402743 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
124402675 CATTAAGCCC
124402685 CCCAAAAAAAACCTAA
1 CCCAAAAAAAACCTAA
**
124402701 CCCAAAAAAAA-AGAA
1 CCCAAAAAAAACCTAA
***
124402716 GAAAAAAAAAAACCTAA
1 -CCCAAAAAAAACCTAA
124402733 CCCAAAAAAAA
1 CCCAAAAAAAA
124402744 AAGAAGAAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
15 2 0.06
16 27 0.87
17 2 0.06
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.03
Consensus pattern (16 bp):
CCCAAAAAAAACCTAA
Found at i:124402710 original size:17 final size:17
Alignment explanation
Indices: 124402688--124402744 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
124402678 TAAGCCCCCC
124402688 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACCCA
* ***
124402705 AAAAAAAA--GAAGAAA
1 AAAAAAAACCTAACCCA
124402720 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACCCA
124402737 AAAAAAAA
1 AAAAAAAA
124402745 AGAAGAAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
15 11 0.37
17 19 0.63
ACGTcount: A:0.75, C:0.18, G:0.04, T:0.04
Consensus pattern (17 bp):
AAAAAAAACCTAACCCA
Found at i:124402729 original size:32 final size:32
Alignment explanation
Indices: 124402688--124402775 Score: 144
Period size: 33 Copynumber: 2.8 Consensus size: 32
124402678 TAAGCCCCCC
124402688 AAAAAAAACCTAACCCAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCAAAAAAAAAGAAGAAA
124402720 AAAAAAAACCTAACCCAAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCC-AAAAAAAAAGAAGAAA
124402753 AAAGAAAAACCTAA--CAAAAAAAA
1 AAA-AAAAACCTAACCCAAAAAAAA
124402776 CTAAAAAAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
31 8 0.15
32 17 0.31
33 19 0.35
34 10 0.19
ACGTcount: A:0.76, C:0.15, G:0.06, T:0.03
Consensus pattern (32 bp):
AAAAAAAACCTAACCCAAAAAAAAAGAAGAAA
Found at i:124402741 original size:33 final size:33
Alignment explanation
Indices: 124402688--124402775 Score: 146
Period size: 32 Copynumber: 2.7 Consensus size: 33
124402678 TAAGCCCCCC
124402688 AAAAAAAACCTAACCC-AAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCAAAAAAAAAAGAAGAAA
124402720 AAAAAAAACCTAACCCAAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCAAAAAAAAAAGAAGAAA
124402753 AAAGAAAAACCTAA--CAAAAAAAA
1 AAA-AAAAACCTAACCCAAAAAAAA
124402776 CTAAAAAAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
32 25 0.46
33 19 0.35
34 10 0.19
ACGTcount: A:0.76, C:0.15, G:0.06, T:0.03
Consensus pattern (33 bp):
AAAAAAAACCTAACCCAAAAAAAAAAGAAGAAA
Found at i:124402771 original size:18 final size:17
Alignment explanation
Indices: 124402688--124402775 Score: 67
Period size: 18 Copynumber: 5.3 Consensus size: 17
124402678 TAAGCCCCCC
**
124402688 AAAAAAAACCTAACCCA
1 AAAAAAAACCTAACAAA
* *
124402705 AAAAAAAA--GAAGAAA
1 AAAAAAAACCTAACAAA
*
124402720 AAAAAAAACCTAACCCAA
1 AAAAAAAACCTAA-CAAA
* *
124402738 AAAAAAAA--GAAGAAA
1 AAAAAAAACCTAACAAA
124402753 AAAGAAAAACCTAACAAA
1 AAA-AAAAACCTAACAAA
124402771 AAAAA
1 AAAAA
124402776 CTAAAAAAAC
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
15 16 0.30
16 7 0.13
17 12 0.23
18 18 0.34
ACGTcount: A:0.76, C:0.15, G:0.06, T:0.03
Consensus pattern (17 bp):
AAAAAAAACCTAACAAA
Found at i:124402831 original size:12 final size:12
Alignment explanation
Indices: 124402814--124402843 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
124402804 TCCCACTTGC
124402814 CCCATTTTTCCT
1 CCCATTTTTCCT
124402826 CCCATTTTTCCT
1 CCCATTTTTCCT
124402838 CCCATT
1 CCCATT
124402844 GTCTACCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
CCCATTTTTCCT
Found at i:124404335 original size:3 final size:3
Alignment explanation
Indices: 124404327--124404361 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
124404317 TCGCTACAAA
124404327 TAT TAT TAT TAAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT T
124404362 TTTAAGAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:124406187 original size:26 final size:26
Alignment explanation
Indices: 124406129--124406189 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
124406119 TCTCAAAAAA
* *
124406129 TTTAAATATATATGGTTTATACATAT
1 TTTAAAAATATATAGTTTATACATAT
* *
124406155 TTAAAAAATATATAGTTTATA-TTAT
1 TTTAAAAATATATAGTTTATACATAT
124406180 TATTAAAAAT
1 T-TTAAAAAT
124406190 TCTAAACATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (26 bp):
TTTAAAAATATATAGTTTATACATAT
Found at i:124406435 original size:14 final size:14
Alignment explanation
Indices: 124406416--124406450 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
124406406 TGAATCCTTA
124406416 TTAAAATCATGTTT
1 TTAAAATCATGTTT
124406430 TTAAAATCATGTTT
1 TTAAAATCATGTTT
*
124406444 TTGAAAT
1 TTAAAAT
124406451 TGATTAGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (14 bp):
TTAAAATCATGTTT
Found at i:124408455 original size:33 final size:35
Alignment explanation
Indices: 124408360--124408456 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
124408350 TTAATATTTT
*
124408360 AATATATAAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
124408395 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
124408428 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
124408457 ATATAACTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:124408471 original size:33 final size:30
Alignment explanation
Indices: 124408395--124408479 Score: 86
Period size: 33 Copynumber: 2.8 Consensus size: 30
124408385 ATTTTTAAGC
124408395 AATA-AATATT-AATTATTTATAAAATTTA
1 AATATAATATTAAATTATTTATAAAATTTA
* * *
124408423 ATTAGAATATATAAATTATATTTTAAATATTTA
1 AATATAATAT-TAAATTAT-TTATAAA-ATTTA
124408456 AATATAACTATTAAA-TATTTATAA
1 AATATAA-TATTAAATTATTTATAA
124408480 TTAGTATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
28 3 0.07
29 5 0.11
30 1 0.02
31 11 0.24
32 9 0.20
33 14 0.30
34 3 0.07
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (30 bp):
AATATAATATTAAATTATTTATAAAATTTA
Found at i:124414119 original size:131 final size:131
Alignment explanation
Indices: 124413917--124414204 Score: 364
Period size: 131 Copynumber: 2.2 Consensus size: 131
124413907 TGAAAAAGCG
* * *
124413917 CAACCCAGCACGATAGGGC-TCGATTCTCAAATCGCCAAACATCGAACATCGCCTTCGCTTTGAA
1 CAACCCAGCACGATAGGGCAT-GATTCTCAAATCACCAAACACCGAACATCGCCTTCGCTTTAAA
* * * *
124413981 AGATTTTTA-ATAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAA
65 AGATTTTTAGA-AAACACGAATGAAAACCTAAAGGAATATTCAATCGTTTTGAGCAAACGAGAAA
124414045 TCA
129 TCA
* * * ** * * *
124414048 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGCCTTTGTTTTAAAA
1 CAACCCAGCACGATAGGGCATGATTCTCAAATCACCAAACACCGAACATCGCCTTCGCTTTAAAA
* * *
124414113 GGTTTTTAGAAGACACGAATGAAAACCTAAAGGGATATTCAATCGTTTTGAGCAAACGAGAAATC
66 GATTTTTAGAAAACACGAATGAAAACCTAAAGGAATATTCAATCGTTTTGAGCAAACGAGAAATC
124414178 A
131 A
* *
124414179 CAACCCAGCACGTTAGGGCACGATTC
1 CAACCCAGCACGATAGGGCATGATTC
124414205 CGCGAATTGC
Statistics
Matches: 135, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
131 133 0.99
132 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCTCAAATCACCAAACACCGAACATCGCCTTCGCTTTAAAA
GATTTTTAGAAAACACGAATGAAAACCTAAAGGAATATTCAATCGTTTTGAGCAAACGAGAAATC
A
Found at i:124415356 original size:32 final size:32
Alignment explanation
Indices: 124415311--124415382 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
124415301 GGATAATAAA
*
124415311 TAAAATAT-TTTAAAGT-AAATA-AATAAAGTT
1 TAAAATATATTTAAAATAAAATATAA-AAAGTT
*
124415341 TAAGAATATATTTAAAATAAAATATAAATAGTT
1 TAA-AATATATTTAAAATAAAATATAAAAAGTT
124415374 TAAAATATA
1 TAAAATATA
124415383 ATTCATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
30 3 0.08
31 5 0.14
32 13 0.36
33 13 0.36
34 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (32 bp):
TAAAATATATTTAAAATAAAATATAAAAAGTT
Found at i:124415447 original size:15 final size:15
Alignment explanation
Indices: 124415427--124415466 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
124415417 TACATAAAAA
124415427 GATTTATATATGAAT
1 GATTTATATATGAAT
124415442 GATTTATATATGAAT
1 GATTTATATATGAAT
* *
124415457 AATATATATA
1 GATTTATATA
124415467 AAAACGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (15 bp):
GATTTATATATGAAT
Found at i:124415686 original size:19 final size:19
Alignment explanation
Indices: 124415651--124415693 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
124415641 TTAATACAAA
*
124415651 GTTTAAAATAACTAAAATG
1 GTTTAAAATAACTAAAAAG
*
124415670 GTTTGAAATAAAC-AAAAAG
1 GTTTAAAAT-AACTAAAAAG
124415689 GTTTA
1 GTTTA
124415694 CATGTACATG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.30
Consensus pattern (19 bp):
GTTTAAAATAACTAAAAAG
Found at i:124417415 original size:15 final size:13
Alignment explanation
Indices: 124417380--124417423 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
124417370 TAGATTGAAA
124417380 ATTTATATATATAT
1 ATTT-TATATATAT
124417394 ATTTTATATATAT
1 ATTTTATATATAT
124417407 GATTATTATATA-AT
1 -ATT-TTATATATAT
124417421 ATT
1 ATT
124417424 AAAAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.43
14 9 0.32
15 7 0.25
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (13 bp):
ATTTTATATATAT
Found at i:124417424 original size:13 final size:14
Alignment explanation
Indices: 124417385--124417424 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
124417375 TGAAAATTTA
124417385 TATATATATATT-T
1 TATATATATATTAT
124417398 TATATATATGATTAT
1 TATATATAT-ATTAT
124417413 TATATA-ATATTA
1 TATATATATATTA
124417425 AAAAACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.52
14 5 0.20
15 7 0.28
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (14 bp):
TATATATATATTAT
Found at i:124427034 original size:34 final size:35
Alignment explanation
Indices: 124426978--124427046 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
124426968 TACATTACCC
* **
124426978 AAAACCCCAAATACAATGCCTTAACTCTCATAGAG
1 AAAACCCAAAATACAAAACCTTAACTCTCATAGAG
* *
124427013 AAAACCCAAAAT-CAAAACCTTAATTTTCATAGAG
1 AAAACCCAAAATACAAAACCTTAACTCTCATAGAG
124427047 TTCTCTCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
34 18 0.62
35 11 0.38
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.22
Consensus pattern (35 bp):
AAAACCCAAAATACAAAACCTTAACTCTCATAGAG
Found at i:124428749 original size:20 final size:20
Alignment explanation
Indices: 124428711--124428750 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
124428701 TATTATTTTC
124428711 ATTTCATTAGTAATAAAATTA
1 ATTTCATTAG-AATAAAATTA
124428732 ATTTCATTA-AAGTAAAATT
1 ATTTCATTAGAA-TAAAATT
124428751 GAGAGACTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 7 0.39
21 9 0.50
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (20 bp):
ATTTCATTAGAATAAAATTA
Done.