Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 427 of 427
Found at i:124437882 original size:11 final size:11
Alignment explanation
Indices: 124437866--124437892 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
124437856 TCCATCTAGG
124437866 TTTATTATTTA
1 TTTATTATTTA
124437877 TTTATTATTTA
1 TTTATTATTTA
124437888 TTTAT
1 TTTAT
124437893 AATCTATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:124438398 original size:19 final size:19
Alignment explanation
Indices: 124438358--124438400 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
124438348 ATAATTAATT
*
124438358 TTTTAATTAAATAAATATA
1 TTTTAATCAAATAAATATA
*
124438377 TTTTAATC-AATATATATAA
1 TTTTAATCAAATAAATAT-A
124438396 TTTTA
1 TTTTA
124438401 TTTTAAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTAATCAAATAAATATA
Found at i:124449974 original size:35 final size:35
Alignment explanation
Indices: 124449930--124450096 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
124449920 TCCTCATTGA
** *
124449930 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
124449965 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
124450005 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
124450040 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
124450075 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
124450097 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:124450013 original size:75 final size:73
Alignment explanation
Indices: 124449925--124450096 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
124449915 GGTTTTCCTC
** * * **
124449925 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
124449989 TCAGTATGG
65 TCAGTATGG
*
124449998 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
124450063 CTCAGTATGG
64 CTCAGTATGG
124450073 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
124450097 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:124452883 original size:29 final size:27
Alignment explanation
Indices: 124452820--124452897 Score: 111
Period size: 28 Copynumber: 2.7 Consensus size: 27
124452810 AAAACAATCT
124452820 AGATTTTTAGGTTTTCACTATTTTTACC
1 AGATTTTTAGG-TTTCACTATTTTTACC
*
124452848 ATATTTTTAGGATTTCACTATTTTTACC
1 AGATTTTTAGG-TTTCACTATTTTTACC
124452876 AGACTTTTTAAGGTTTCACTAT
1 AGA-TTTTT-AGGTTTCACTAT
124452898 ATATATATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 28 0.62
29 14 0.31
30 3 0.07
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.51
Consensus pattern (27 bp):
AGATTTTTAGGTTTCACTATTTTTACC
Found at i:124453279 original size:27 final size:27
Alignment explanation
Indices: 124453130--124453284 Score: 98
Period size: 28 Copynumber: 5.6 Consensus size: 27
124453120 TATTACCATA
* *
124453130 TTTAAGGTCTTGCTA-TCTTATGGGAAT
1 TTTAAGGTTTTGCTATTCTTAT-CGAAT
* * * *
124453157 TTTAGGGCTTTGCTATTCTTACTAGATT
1 TTTAAGGTTTTGCTATTCTTA-TCGAAT
* ** * **
124453185 TTTGAGGTTTCACTATTCTTTTCGGCT
1 TTTAAGGTTTTGCTATTCTTATCGAAT
* * *
124453212 TTTTAGGATTTCGCTATTCTTA-CCATATT
1 TTTAAGG-TTTTGCTATTCTTATCGA-A-T
*
124453241 TTTAAGGCTTTGCTATTCTTATCGAAT
1 TTTAAGGTTTTGCTATTCTTATCGAAT
*
124453268 TTTAAGGTTTTGTTATT
1 TTTAAGGTTTTGCTATT
124453285 ATTGTAAGAT
Statistics
Matches: 96, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
27 38 0.40
28 48 0.50
29 10 0.10
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.51
Consensus pattern (27 bp):
TTTAAGGTTTTGCTATTCTTATCGAAT
Found at i:124453387 original size:26 final size:26
Alignment explanation
Indices: 124453321--124453394 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
124453311 TTGTTTTTTT
*
124453321 ATTTTTAGGGTTTCATTGTTTTACTAG
1 ATTTTTAGGGTTT-ATTGTTTCACTAG
** **
124453348 A-TTTTAGAATTTTATTGTTTCGTTAG
1 ATTTTTAG-GGTTTATTGTTTCACTAG
124453374 ATTTTTAGGGTTTATTTGTTT
1 ATTTTTAGGGTTTA-TTGTTT
124453395 TTATCAAATG
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
26 21 0.57
27 16 0.43
ACGTcount: A:0.19, C:0.04, G:0.18, T:0.59
Consensus pattern (26 bp):
ATTTTTAGGGTTTATTGTTTCACTAG
Found at i:124453918 original size:3 final size:3
Alignment explanation
Indices: 124453910--124453936 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
124453900 AAAAAGACAA
124453910 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
124453937 GTCTAATCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:124456088 original size:22 final size:20
Alignment explanation
Indices: 124456060--124456100 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
124456050 AATTAACTTT
124456060 TTATAGCAGTTTTAGAAAAAAA
1 TTATAGCAG-TTTA-AAAAAAA
124456082 TTATAGCAGTTTAAAAAAA
1 TTATAGCAGTTTAAAAAAA
124456101 CAATGCTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 4 0.21
22 9 0.47
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.32
Consensus pattern (20 bp):
TTATAGCAGTTTAAAAAAAA
Found at i:124458607 original size:77 final size:78
Alignment explanation
Indices: 124458518--124458671 Score: 229
Period size: 78 Copynumber: 2.0 Consensus size: 78
124458508 CCATCTCATA
* * *
124458518 TTCTACCATTAAACCATGA-TCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAAT
1 TTCTACCATTAAACCATGACCCCTTGATCTCACCAACTAGGAGAGTCGGTGATCATGTTGATAAC
*
124458582 GATCACTATGGAG
66 GATCACCATGGAG
* * * *
124458595 TTCTACCATTAAACCATGACCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGC
1 TTCTACCATTAAACCATGACCCCTTGATCTCACCAACTAGGAGAGTCGGTGATCATGTTGATAAC
124458660 GATCACCATGGA
66 GATCACCATGGA
124458672 CTTTGTGTAC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
77 19 0.28
78 49 0.72
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (78 bp):
TTCTACCATTAAACCATGACCCCTTGATCTCACCAACTAGGAGAGTCGGTGATCATGTTGATAAC
GATCACCATGGAG
Found at i:124460325 original size:22 final size:22
Alignment explanation
Indices: 124460297--124460343 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
124460287 ACAGCCGAAT
124460297 CAGTCTCATGAGATGCTAAATA
1 CAGTCTCATGAGATGCTAAATA
124460319 CAGTCTCATGAGATGCTAAATA
1 CAGTCTCATGAGATGCTAAATA
124460341 CAG
1 CAG
124460344 CGCAAGTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (22 bp):
CAGTCTCATGAGATGCTAAATA
Found at i:124460715 original size:19 final size:20
Alignment explanation
Indices: 124460687--124460729 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
124460677 TCTTTTGTGC
*
124460687 AATT-TGTTATG-GTAATAA
1 AATTGTGTTATGCCTAATAA
124460705 AATTGTGTTATGCCTAATAA
1 AATTGTGTTATGCCTAATAA
124460725 AATTG
1 AATTG
124460730 ATGAATGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 7 0.32
20 11 0.50
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (20 bp):
AATTGTGTTATGCCTAATAA
Found at i:124460962 original size:30 final size:30
Alignment explanation
Indices: 124460928--124460989 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
124460918 AATTTTGACT
*
124460928 TAGGCTCATTTTTTTACAGGGGCATTTTAG
1 TAGGCTCATTTTTCTACAGGGGCATTTTAG
*
124460958 TAGGCTCATTTTTCTATAGGGGCATTTTAG
1 TAGGCTCATTTTTCTACAGGGGCATTTTAG
124460988 TA
1 TA
124460990 CAGTTTAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.44
Consensus pattern (30 bp):
TAGGCTCATTTTTCTACAGGGGCATTTTAG
Found at i:124465463 original size:132 final size:131
Alignment explanation
Indices: 124465276--124465612 Score: 365
Period size: 131 Copynumber: 2.6 Consensus size: 131
124465266 GAAATTGCAG
* * * * ** * *
124465276 CCCAGCACGATAGGGTACTATTCCCTGAATTGCCAAACATCGAATATCGCCTTCGTTTTAAAGGG
1 CCCAACACGATAGAGCACGATTCCC-GAATTATCAAACATCGAGTATTGCCTTCGTTTTAAAGGG
** ** * *
124465341 TTTTTAGA-AAACGTGAGTG-AAATTTCGAAGGAATCTTCGATTGTTTTGGAAAAAACGAGAAAT
65 TTTTTA-ATAAACACGAGTGAAAACCT-AAAGGAATATTCGATTGTTTT-GAAAAAACGAGAAAT
124465404 CACAA
127 CACAA
* ** *
124465409 CCCAACACGTTAGAGCACGATTCCCGAATTATCAAACATCGAGTATTGTATTCGTTTTGGAA-GG
1 CCCAACACGATAGAGCACGATTCCCGAATTATCAAACATCGAGTATTGCCTTCGTTTT-AAAGGG
*
124465473 TTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCAC
65 TTTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAAAAAACGAGAAATCAC
124465538 AA
130 AA
* * * * * * **
124465540 CCCAGCACGATAGGGCATGATACTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAAGAAT
1 CCCAACACGATAGAGCACGATTCCCGAATTATCAAACATCGAGTATTGCCTTCGTTTTAAAGGGT
124465605 TTTTAATA
66 TTTTAATA
124465613 GTTGTGAAAC
Statistics
Matches: 169, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
130 2 0.01
131 78 0.46
132 63 0.37
133 26 0.15
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (131 bp):
CCCAACACGATAGAGCACGATTCCCGAATTATCAAACATCGAGTATTGCCTTCGTTTTAAAGGGT
TTTTAATAAACACGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAAAAAACGAGAAATCACA
A
Found at i:124468654 original size:44 final size:44
Alignment explanation
Indices: 124468510--124468734 Score: 236
Period size: 44 Copynumber: 5.1 Consensus size: 44
124468500 CGGTAACACC
* * ** *
124468510 AATCTGTTATTTTCGATCTACTCTCTA-CCAATACAGAGATGCCA
1 AATCTGTTATCTTCGATCTGCTCTC-AGCCGCTACAGAGACGCCA
* * * *** *
124468554 AATCTGCTATCTTCGATCTGCCCTCTGACAATTATAGAGACGCCA
1 AATCTGTTATCTTCGATCTGCTCTCAG-CCGCTACAGAGACGCCA
* * * *
124468599 AATCTGCTATCTCCGATCTGCTCTCCGCCGCTACAGAGACGCTA
1 AATCTGTTATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCA
124468643 AATCTGTTATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCA
1 AATCTGTTATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCA
* * * **
124468687 AATCTGTTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGTTATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCA
124468731 AATC
1 AATC
124468735 AGCTATTGTA
Statistics
Matches: 153, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
44 116 0.76
45 37 0.24
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (44 bp):
AATCTGTTATCTTCGATCTGCTCTCAGCCGCTACAGAGACGCCA
Found at i:124473719 original size:17 final size:19
Alignment explanation
Indices: 124473699--124473740 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
124473689 AATAAAATAT
124473699 AAATAT-AAAT-AATAGAG
1 AAATATCAAATAAATAGAG
124473716 AAATATCACAAATAAATAGAG
1 AAATAT--CAAATAAATAGAG
124473737 AAAT
1 AAAT
124473741 TACGCACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 4 0.19
21 11 0.52
ACGTcount: A:0.64, C:0.05, G:0.10, T:0.21
Consensus pattern (19 bp):
AAATATCAAATAAATAGAG
Found at i:124477694 original size:15 final size:15
Alignment explanation
Indices: 124477674--124477702 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
124477664 AAATGAGTCC
124477674 AATTTATTAAAAAGA
1 AATTTATTAAAAAGA
124477689 AATTTATTAAAAAG
1 AATTTATTAAAAAG
124477703 TTAGAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AATTTATTAAAAAGA
Found at i:124480692 original size:59 final size:58
Alignment explanation
Indices: 124480622--124480735 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 58
124480612 TACATTATTC
* * *
124480622 ACTATTGATAAATT-TTATTTTAATCATTTAATTATAAAAAATTATAAAATAATTACTCA
1 ACTATTAATAAATTATT-TTTT-ATAATTTAACTATAAAAAATTATAAAATAATTACTCA
124480681 ACTATTAATAAATTCATTTTTTATAATTTAACTATAAAAAATTATAAAATAATTA
1 ACTATTAATAAATT-ATTTTTTATAATTTAACTATAAAAAATTATAAAATAATTA
124480736 TTTTAACTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
59 44 0.88
60 4 0.08
61 2 0.04
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.44
Consensus pattern (58 bp):
ACTATTAATAAATTATTTTTTATAATTTAACTATAAAAAATTATAAAATAATTACTCA
Found at i:124486005 original size:19 final size:20
Alignment explanation
Indices: 124485977--124486014 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
124485967 CGCAAGGTTT
124485977 AAAATATTTTAAAATAAATA
1 AAAATATTTTAAAATAAATA
124485997 AAAAT-TTTTAAAATAAAT
1 AAAATATTTTAAAATAAAT
124486015 TGTACGTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATATTTTAAAATAAATA
Found at i:124486066 original size:19 final size:20
Alignment explanation
Indices: 124486042--124486079 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
124486032 TAAAATATCA
*
124486042 AAAATTTAAA-TTTAAAATC
1 AAAATTGAAATTTTAAAATC
124486061 AAAATTGAAATTTTAAAAT
1 AAAATTGAAATTTTAAAAT
124486080 TTTAATTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
AAAATTGAAATTTTAAAATC
Found at i:124489088 original size:52 final size:52
Alignment explanation
Indices: 124489005--124489106 Score: 159
Period size: 52 Copynumber: 2.0 Consensus size: 52
124488995 AATTTTGCTT
* ** *
124489005 CATGCATCTGTAAGTGAAATGTGTTTGTATATATATTCTTTTGATATATTTG
1 CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATTTG
*
124489057 CATGCATCCGTAAGTGAAATTTGCATCTATATATATTCTTTTGATATATT
1 CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATT
124489107 CTTTCTATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (52 bp):
CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATTTG
Found at i:124489091 original size:116 final size:113
Alignment explanation
Indices: 124488877--124489097 Score: 352
Period size: 116 Copynumber: 1.9 Consensus size: 113
124488867 GCACATTCCA
* * *
124488877 TATAAATTTTGCTTCCTGCATCTGTAAGTGAAATGTGTGTTTATATATTCTTTTTATATATTTGC
1 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTGTGTATATATATTCTTTTGATATATTTGC
* * *
124488942 ATTCATCCATAAGTGAAATTTGGATGTATATATATTTCTTTCTATCTGT
66 ATGCATCCATAAGTGAAATTTGCATCTATATATA-TTCTTTCTATCTGT
124488991 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTGTTTGTATATATATTCTTTTGATATATTT
1 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTG--TGTATATATATTCTTTTGATATATTT
*
124489056 GCATGCATCCGTAAGTGAAATTTGCATCTATATATATTCTTT
64 GCATGCATCCATAAGTGAAATTTGCATCTATATATATTCTTT
124489098 TGATATATTC
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
114 36 0.37
115 6 0.06
116 56 0.57
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (113 bp):
TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTGTGTATATATATTCTTTTGATATATTTGC
ATGCATCCATAAGTGAAATTTGCATCTATATATATTCTTTCTATCTGT
Found at i:124489132 original size:27 final size:27
Alignment explanation
Indices: 124489100--124489151 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
124489090 TATTCTTTTG
*
124489100 ATATATTCTTTCTATCTGTTTGTGTAT
1 ATATATTCTTTCTATCTGTATGTGTAT
124489127 ATATATTCTTTCTATCTGTATGTGT
1 ATATATTCTTTCTATCTGTATGTGT
124489152 GTGTGTCACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.58
Consensus pattern (27 bp):
ATATATTCTTTCTATCTGTATGTGTAT
Found at i:124492004 original size:216 final size:213
Alignment explanation
Indices: 124491629--124492051 Score: 645
Period size: 216 Copynumber: 2.0 Consensus size: 213
124491619 TTCAGATTTA
*
124491629 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCATTTTTTTGATAGTTTATCGCCTGTTATGTG
1 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCATTTTTTTGATAGTTTATCGCCTGTTATCTG
* *
124491694 TTTTTTTTTTTTGTCGGTTGTTTGTTTCTCTCTGTAATCTGTATTGAAGGACATTTTCTTGCAAA
66 TTTTTTTTTTTTGTCGATTGTTTGTTTCTCTC----ATCTGTATTGAAGGACAATTTCTTGCAAA
124491759 TCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATACAAGTATCTA
127 TCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATACAAGTATCTA
*
124491824 CCCTAAAACCCTTATGAAACAC
192 ACCTAAAACCCTTATGAAACAC
*
124491846 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCGTCATTTTTTTTATAGTTTATCGCCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGA--T-GTCATTTTTTTGATAGTTTATCGCCTGTTAT
* * *
124491911 CTGTTTTATTTTATTTTTTCTGATTGTTTGTTTC-C-C-TCTGTATTGAGGGACAATTTCTTGGA
63 CTGTTTT-TTTT-TTTTGTC-GATTGTTTGTTTCTCTCATCTGTATTGAAGGACAATTTCTTGCA
* *
124491973 AATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTTTATAAGTATC
125 AATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATACAAGTATC
124492038 TAACCTAAAACCCT
190 TAACCTAAAACCCT
124492052 AACTGATTAG
Statistics
Matches: 190, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
216 99 0.52
217 30 0.16
219 1 0.01
220 36 0.19
221 5 0.03
222 7 0.04
223 12 0.06
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.48
Consensus pattern (213 bp):
TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCATTTTTTTGATAGTTTATCGCCTGTTATCTG
TTTTTTTTTTTTGTCGATTGTTTGTTTCTCTCATCTGTATTGAAGGACAATTTCTTGCAAATCTT
TGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATACAAGTATCTAACCT
AAAACCCTTATGAAACAC
Found at i:124492311 original size:42 final size:42
Alignment explanation
Indices: 124492252--124492390 Score: 185
Period size: 42 Copynumber: 3.3 Consensus size: 42
124492242 TCCGTCAATT
* * *
124492252 AAAAA-AAAGAGAAAAAGTACTGGGTTAAATGCATT-AAAGAA
1 AAAAAGAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAAA-AA
124492293 AAAAAGAAAAAGAAAAAGTACTGGGCTT-ATTGCCTTCAAAAA
1 AAAAAGAAAAAGAAAAAGTACTGGG-TTAATTGCCTTCAAAAA
* *
124492335 AAAAAGGAAAAGAAAAAGTACTGGGCTAATTGCCTTCAAAAA
1 AAAAAGAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAAAAA
*
124492377 AAAAAAAAAAAGAA
1 AAAAAGAAAAAGAA
124492391 TAAGAAAAAG
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
41 6 0.07
42 76 0.87
43 5 0.06
ACGTcount: A:0.58, C:0.09, G:0.17, T:0.16
Consensus pattern (42 bp):
AAAAAGAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAAAAA
Found at i:124492352 original size:48 final size:47
Alignment explanation
Indices: 124492291--124492403 Score: 155
Period size: 42 Copynumber: 2.5 Consensus size: 47
124492281 TGCATTAAAG
*
124492291 AAAAAAAGAAAAAGAAAAAGTACTGGGCTTATTGCCTTC-----AAA
1 AAAAAAAGAAAAAGAAAAAGTACTGGGCTAATTGCCTTCAAAAAAAA
*
124492333 AAAAAAAGGAAAAGAAAAAGTACTGGGCTAATTGCCTTCAAAAAAAAA
1 AAAAAAAGAAAAAGAAAAAGTACTGGGCTAATTGCCTTC-AAAAAAAA
*
124492381 AAAAAAAGAATAAGAAAAAGTAC
1 AAAAAAAGAAAAAGAAAAAGTAC
124492404 AGGGTAAATT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
42 37 0.61
48 24 0.39
ACGTcount: A:0.59, C:0.10, G:0.16, T:0.15
Consensus pattern (47 bp):
AAAAAAAGAAAAAGAAAAAGTACTGGGCTAATTGCCTTCAAAAAAAA
Found at i:124492427 original size:14 final size:14
Alignment explanation
Indices: 124492408--124492435 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
124492398 AAGTACAGGG
124492408 TAAATTTTCATTCT
1 TAAATTTTCATTCT
124492422 TAAATTTTCATTCT
1 TAAATTTTCATTCT
124492436 AACTTTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (14 bp):
TAAATTTTCATTCT
Found at i:124496550 original size:11 final size:11
Alignment explanation
Indices: 124496534--124496558 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
124496524 TGCAGTTTCT
124496534 TCCAATGAAAG
1 TCCAATGAAAG
124496545 TCCAATGAAAG
1 TCCAATGAAAG
124496556 TCC
1 TCC
124496559 GTGAAGCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20
Consensus pattern (11 bp):
TCCAATGAAAG
Found at i:124498663 original size:154 final size:155
Alignment explanation
Indices: 124498377--124498691 Score: 492
Period size: 154 Copynumber: 2.0 Consensus size: 155
124498367 CAAACACTGC
* *
124498377 TTATATTGGTCTTCTTAAATCTTGTGATGTGTCTTTTTTTTGATAGTTTATCGCCCTGTTATGTG
1 TTATATTCGTCTTCTTAAATCTTGTGA-GTGTCATTTTTTTGATAGTTTATCGCCCTGTTATGTG
* *
124498442 TTTTATTATTATTTTTTGCTGTTTGTTTCCCGCTGTAATATGTATTGAGGGACATTTTCTTGGAA
65 TTTTATTATTATTTTCTGCTGTTTGTTTCCCGCTGTAATATGTATTGAGGGACATTTTCTTGCAA
124498507 ATC-ATTGAGTCCTATTTATGAGATT
130 ATCTATTGAGTCCTATTTATGAGATT
*
124498532 TTATATTCGTCTTCTTAAATCTTGTGA-TGTCATTTTTTTGATAGTTTATC-TCCTGTTATGTGT
1 TTATATTCGTCTTCTTAAATCTTGTGAGTGTCATTTTTTTGATAGTTTATCGCCCTGTTATGTGT
* * * *
124498595 TTTATTTATTTATTTTCTGTTGTTTGTTTCCTGTTGTAATATGTATTGAGGGACATTTTTTTGCA
66 TTTA-TTA-TTATTTTCTGCTGTTTGTTTCCCGCTGTAATATGTATTGAGGGACATTTTCTTGCA
*
124498660 AATCTTTTGAGTCCTATTTATGAGATT
129 AATCTATTGAGTCCTATTTATGAGATT
124498687 TTATA
1 TTATA
124498692 GCGAAGATAT
Statistics
Matches: 147, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
152 16 0.11
153 25 0.17
154 54 0.37
155 52 0.35
ACGTcount: A:0.19, C:0.11, G:0.17, T:0.54
Consensus pattern (155 bp):
TTATATTCGTCTTCTTAAATCTTGTGAGTGTCATTTTTTTGATAGTTTATCGCCCTGTTATGTGT
TTTATTATTATTTTCTGCTGTTTGTTTCCCGCTGTAATATGTATTGAGGGACATTTTCTTGCAAA
TCTATTGAGTCCTATTTATGAGATT
Found at i:124499013 original size:40 final size:40
Alignment explanation
Indices: 124498957--124499091 Score: 193
Period size: 40 Copynumber: 3.3 Consensus size: 40
124498947 CCCGTCAATT
*
124498957 AAAAAAAAAGAAGAAAAAGTACTGGGTTAATTGCCTT-AA
1 AAAAAAAAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAA
124498996 AGAAAAAAAAAAAGAAAAAGTACTGGGCTT-ATTGCCTTCAA
1 A-AAAAAAAAAAAGAAAAAGTACTGGG-TTAATTGCCTTCAA
*
124499037 AAAGAAGAAGGAAAAGAAAAAGTACTGGGTTAATTGCCTTCAA
1 AAA-AA-AA-AAAAAGAAAAAGTACTGGGTTAATTGCCTTCAA
124499080 AAAAAAAAAAAA
1 AAAAAAAAAAAA
124499092 AGAATAAGAA
Statistics
Matches: 86, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
39 1 0.01
40 38 0.44
41 9 0.10
42 6 0.07
43 32 0.37
ACGTcount: A:0.56, C:0.09, G:0.18, T:0.18
Consensus pattern (40 bp):
AAAAAAAAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAA
Found at i:124499041 original size:43 final size:43
Alignment explanation
Indices: 124498957--124499092 Score: 192
Period size: 43 Copynumber: 3.2 Consensus size: 43
124498947 CCCGTCAATT
124498957 AAAAAAAAAGAAGAAAAAGTACTGGGTTAATTGCCTT---AAAG
1 AAAAAAAAA-AAGAAAAAGTACTGGGTTAATTGCCTTCAAAAAG
124498998 AAAAAAAAAAAGAAAAAGTACTGGGCTT-ATTGCCTTCAAAAAG
1 AAAAAAAAAAAGAAAAAGTACTGGG-TTAATTGCCTTCAAAAAG
* **
124499041 AAGAAGGAAAAGAAAAAGTACTGGGTTAATTGCCTTCAAAAA-
1 AAAAAAAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAAAAAG
124499083 AAAAAAAAAA
1 AAAAAAAAAA
124499093 GAATAAGAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
40 24 0.29
41 11 0.13
42 9 0.11
43 40 0.48
ACGTcount: A:0.56, C:0.09, G:0.18, T:0.18
Consensus pattern (43 bp):
AAAAAAAAAAAGAAAAAGTACTGGGTTAATTGCCTTCAAAAAG
Found at i:124505943 original size:18 final size:18
Alignment explanation
Indices: 124505922--124505980 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
124505912 TAAGAAGACG
124505922 AAGTATGCCTTGAAGGCT
1 AAGTATGCCTTGAAGGCT
* * * * *
124505940 AAGTGT-CATAGAAGACG
1 AAGTATGCCTTGAAGGCT
*
124505957 AAGCATGCCTTGAAGGCT
1 AAGTATGCCTTGAAGGCT
124505975 AAGTAT
1 AAGTAT
124505981 TTGAGAAGAC
Statistics
Matches: 28, Mismatches: 12, Indels: 2
0.67 0.29 0.05
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (18 bp):
AAGTATGCCTTGAAGGCT
Found at i:124505953 original size:35 final size:36
Alignment explanation
Indices: 124505879--124506055 Score: 192
Period size: 35 Copynumber: 5.2 Consensus size: 36
124505869 TTTAGTTGTT
**
124505879 TAAGAAGTTGAAGTATGCCTTGAAGGCT--GTGTC-
1 TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
124505912 TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
1 TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
* * *
124505948 T-AGAAGACGAAGCATGCCTTGAAGGCTAAGTAT-T
1 TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
* * * *
124505982 TGAGAAGACGAAGTTTGCCTTAAAGGCTAAGTG-CC
1 TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
* *
124506017 GAAGAAGATGAAGTATGCCTTGAAGGCT--GTGTC-
1 TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
124506050 TAAGAA
1 TAAGAA
124506056 TAGAAAGTAT
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
33 34 0.28
34 2 0.02
35 85 0.70
36 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (36 bp):
TAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTCA
Found at i:124506008 original size:70 final size:68
Alignment explanation
Indices: 124505888--124506055 Score: 221
Period size: 70 Copynumber: 2.4 Consensus size: 68
124505878 TTAAGAAGTT
* * *
124505888 GAAGTATGCCTTGAAGGCTGTGTCTAAGAAGACGAAGTATGCCTTGAAGGCTAAGTGTC-ATAGA
1 GAAGTATGCCTTGAAGGCTGTATCTAAGAAGACGAAGTATGCCTTAAAGGCTAAGTGCCGA-AGA
124505952 AGAC
65 AGAC
* * * *
124505956 GAAGCATGCCTTGAAGGCTAAGTATTTGAGAAGACGAAGTTTGCCTTAAAGGCTAAGTGCCGAAG
1 GAAGTATGCCTTGAAGGCT--GTATCTAAGAAGACGAAGTATGCCTTAAAGGCTAAGTGCCGAAG
*
124506021 AAGAT
64 AAGAC
*
124506026 GAAGTATGCCTTGAAGGCTGTGTCTAAGAA
1 GAAGTATGCCTTGAAGGCTGTATCTAAGAA
124506056 TAGAAAGTAT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
68 26 0.31
70 58 0.68
71 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (68 bp):
GAAGTATGCCTTGAAGGCTGTATCTAAGAAGACGAAGTATGCCTTAAAGGCTAAGTGCCGAAGAA
GAC
Found at i:124506081 original size:103 final size:104
Alignment explanation
Indices: 124505881--124506116 Score: 259
Period size: 103 Copynumber: 2.3 Consensus size: 104
124505871 TAGTTGTTTA
* * * *
124505881 AGAAGTTGAAGTATGCCTTGAAGGCT--GTGTCTAAGAAGACGAAGTATGCCTTGAAGGCTAAGT
1 AGAAGTAGAAGTATGCCTTAAAGGCTAAGTGCCGAAGAAGACGAAGTATGCCTTGAAGGCT-AGT
*
124505944 GTCATAGAAGACGAAGCATGCCTTGAAGGCTAAGTATTTG
65 GTCATAGAAGACGAAGCATGCCTCGAAGGCTAAGTATTTG
* *
124505984 AGAAG-ACGAAGTTTGCCTTAAAGGCTAAGTGCCGAAGAAGATGAAGTATGCCTTGAAGGCT-GT
1 AGAAGTA-GAAGTATGCCTTAAAGGCTAAGTGCCGAAGAAGACGAAGTATGCCTTGAAGGCTAGT
* * * * * *
124506047 GTC-TAAGAATA-GAAAGTATGTCTCGTAGGTTAAGTGTTTG
65 GTCAT-AGAAGACG-AAGCATGCCTCGAAGGCTAAGTATTTG
* *
124506087 AGAAGTAGAAGTATGCGTTAAAAGCTAAGT
1 AGAAGTAGAAGTATGCCTTAAAGGCTAAGT
124506117 TCCTGGAAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
102 2 0.02
103 78 0.70
104 1 0.01
105 30 0.27
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (104 bp):
AGAAGTAGAAGTATGCCTTAAAGGCTAAGTGCCGAAGAAGACGAAGTATGCCTTGAAGGCTAGTG
TCATAGAAGACGAAGCATGCCTCGAAGGCTAAGTATTTG
Found at i:124511182 original size:20 final size:22
Alignment explanation
Indices: 124511139--124511189 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 22
124511129 TCCAGGAATA
124511139 TTTG-GGTTTGGGGTCTAAGGG
1 TTTGAGGTTTGGGGTCTAAGGG
*
124511160 TTTGAGGTTTGGGG-CT-TGGG
1 TTTGAGGTTTGGGGTCTAAGGG
124511180 TTTGAGGTTT
1 TTTGAGGTTT
124511190 AAGGTTTACG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 13 0.46
21 6 0.21
22 9 0.32
ACGTcount: A:0.08, C:0.04, G:0.45, T:0.43
Consensus pattern (22 bp):
TTTGAGGTTTGGGGTCTAAGGG
Found at i:124511278 original size:105 final size:105
Alignment explanation
Indices: 124511154--124511364 Score: 309
Period size: 105 Copynumber: 2.0 Consensus size: 105
124511144 GTTTGGGGTC
* * * * * *
124511154 TAAGGGTTTGAGGTTTGGGGCTTGGGTTTGAGGTTTAAGGTTTACGGTTGGGTTGGTGTTTTTGG
1 TAAGGGTTTGAAGCTTGGGGCTTGGGTTTGAGGCTTAAGGTTTACGGTTGGGCTGGTATTTTTGA
*
124511219 GCCTTC-TCTTAATTGTTTGGGGCTGTGGA-CTTCTTAGGTT
66 GCCTTCGT-TTAAGTGTTTGGGGCTGTGGATC-TCTTAGGTT
*
124511259 TAAGGGTTTGAAGCTTGGGGCTTGGGTTTGAGGCTTAAGTTTTACGGTTGGGCTGGTATTTTTGA
1 TAAGGGTTTGAAGCTTGGGGCTTGGGTTTGAGGCTTAAGGTTTACGGTTGGGCTGGTATTTTTGA
*
124511324 GCTTTCGTTTAAGTGTTTGGGGCTGTGGATCTCTTAGGTT
66 GCCTTCGTTTAAGTGTTTGGGGCTGTGGATCTCTTAGGTT
124511364 T
1 T
124511365 TAGTTACTGG
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
105 93 0.98
106 2 0.02
ACGTcount: A:0.12, C:0.09, G:0.36, T:0.43
Consensus pattern (105 bp):
TAAGGGTTTGAAGCTTGGGGCTTGGGTTTGAGGCTTAAGGTTTACGGTTGGGCTGGTATTTTTGA
GCCTTCGTTTAAGTGTTTGGGGCTGTGGATCTCTTAGGTT
Found at i:124513836 original size:35 final size:35
Alignment explanation
Indices: 124513804--124513929 Score: 116
Period size: 35 Copynumber: 3.7 Consensus size: 35
124513794 TTGAGAAGTT
*
124513804 GAAGTATGCCTTGAAGGCTAAGTGTCTTAGAAGAC
1 GAAGTATGCCTTGAAGGCTAAGTGTCTTAGAAGAA
* * *
124513839 GAAGCATGCCTTGAAGGCT--GTGTCTAAGAA-TA
1 GAAGTATGCCTTGAAGGCTAAGTGTCTTAGAAGAA
* * * *
124513871 GAGAGTATGTCTCGTAGGTTAAGTGT-TTGAGAAGAA
1 GA-AGTATGCCTTGAAGGCTAAGTGTCTT-AGAAGAA
* *
124513907 GAAGTATGCATTGAAAGCTAAGT
1 GAAGTATGCCTTGAAGGCTAAGT
124513930 TATACAATGC
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
32 2 0.03
33 22 0.32
34 1 0.01
35 41 0.59
36 3 0.04
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (35 bp):
GAAGTATGCCTTGAAGGCTAAGTGTCTTAGAAGAA
Found at i:124528694 original size:17 final size:17
Alignment explanation
Indices: 124528672--124528705 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
124528662 AGCTCAATTA
124528672 ATTGTTGGTTAGTGAAT
1 ATTGTTGGTTAGTGAAT
124528689 ATTGTTGGTTAGTGAAT
1 ATTGTTGGTTAGTGAAT
124528706 GCGTTCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (17 bp):
ATTGTTGGTTAGTGAAT
Found at i:124532330 original size:13 final size:14
Alignment explanation
Indices: 124532308--124532373 Score: 80
Period size: 15 Copynumber: 4.6 Consensus size: 14
124532298 CGGCAAGGGT
124532308 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
124532322 TTT-GGGTTTGGGG
1 TTTGGGGTTTGGGG
*
124532335 TTTGGGGTTAGGGG
1 TTTGGGGTTTGGGG
**
124532349 TTTAGGGGTTTTAGG
1 TTT-GGGGTTTGGGG
124532364 TTTAGGGGTT
1 TTT-GGGGTT
124532374 AAGGTTAGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
13 13 0.28
14 15 0.33
15 18 0.39
ACGTcount: A:0.06, C:0.00, G:0.50, T:0.44
Consensus pattern (14 bp):
TTTGGGGTTTGGGG
Found at i:124532383 original size:13 final size:13
Alignment explanation
Indices: 124532350--124532392 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
124532340 GGTTAGGGGT
*
124532350 TTAGGGGTTTTAGG
1 TTAGGGG-TTAAGG
124532364 TTTAGGGGTTAAGG
1 -TTAGGGGTTAAGG
*
124532378 TTAGGGGTTAGGG
1 TTAGGGGTTAAGG
124532391 TT
1 TT
124532393 TAGGTTAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 14 0.54
14 5 0.19
15 7 0.27
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (13 bp):
TTAGGGGTTAAGG
Found at i:124532388 original size:7 final size:7
Alignment explanation
Indices: 124532312--124536837 Score: 7991
Period size: 7 Copynumber: 649.9 Consensus size: 7
124532302 AAGGGTTTTG
*
124532312 GGGTTTG
1 GGGTTTA
124532319 GGGTTT-
1 GGGTTTA
*
124532325 GGGTTTG
1 GGGTTTA
124532332 GGGTTT-
1 GGGTTTA
*
124532338 GGGGTTA
1 GGGTTTA
124532345 GGGGTTTA
1 -GGGTTTA
124532353 GGGGTTTTA
1 -GGG-TTTA
124532362 -GGTTTA
1 GGGTTTA
*
124532368 GGGGTTA
1 GGGTTTA
*
124532375 AGG-TTA
1 GGGTTTA
*
124532381 GGGGTTA
1 GGGTTTA
124532388 GGGTTTA
1 GGGTTTA
124532395 -GG-TTA
1 GGGTTTA
124532400 GGGGTTTA
1 -GGGTTTA
* *
124532408 AGGTCTA
1 GGGTTTA
124532415 GGGGTTTA
1 -GGGTTTA
* *
124532423 AGGTCTA
1 GGGTTTA
124532430 GGGTTTTA
1 GGG-TTTA
*
124532438 GGGTCTA
1 GGGTTTA
*
124532445 GGGTCTA
1 GGGTTTA
*
124532452 GGGTCTA
1 GGGTTTA
*
124532459 GGGTCTA
1 GGGTTTA
*
124532466 GGGTCTA
1 GGGTTTA
*
124532473 GGGTCTA
1 GGGTTTA
*
124532480 GGGTCTA
1 GGGTTTA
*
124532487 GGGTCTA
1 GGGTTTA
*
124532494 GGGTTCA
1 GGGTTTA
*
124532501 GGGTTCA
1 GGGTTTA
*
124532508 GGGTTCA
1 GGGTTTA
*
124532515 GGGTTCA
1 GGGTTTA
*
124532522 GGGTTCA
1 GGGTTTA
*
124532529 GGGTTCA
1 GGGTTTA
*
124532536 GGGTTCA
1 GGGTTTA
*
124532543 GGGTTCA
1 GGGTTTA
*
124532550 GGGTTCA
1 GGGTTTA
*
124532557 GGGTTCA
1 GGGTTTA
*
124532564 GGGTTCA
1 GGGTTTA
**
124532571 GGGGTTCG
1 -GGGTTTA
*
124532579 GGGTTCA
1 GGGTTTA
124532586 GGGTTTA
1 GGGTTTA
124532593 GGGTTTTA
1 GGG-TTTA
*
124532601 GGGTTCA
1 GGGTTTA
124532608 GGGTTTTA
1 GGG-TTTA
124532616 GGGTTTA
1 GGGTTTA
124532623 GGGTTTA
1 GGGTTTA
124532630 GGGTTTA
1 GGGTTTA
124532637 GGGTTTA
1 GGGTTTA
124532644 GGG-TTA
1 GGGTTTA
*
124532650 GGGGTTA
1 GGGTTTA
124532657 GGGTTTA
1 GGGTTTA
124532664 GGGTTTA
1 GGGTTTA
124532671 GGGTTTA
1 GGGTTTA
*
124532678 GGGGTTA
1 GGGTTTA
124532685 GGGTTTA
1 GGGTTTA
124532692 GGGTTTA
1 GGGTTTA
124532699 GGGTTTTA
1 GGG-TTTA
124532707 GGGTTTA
1 GGGTTTA
124532714 GGGTTTTA
1 GGG-TTTA
124532722 GGGTTTA
1 GGGTTTA
124532729 GGGTTTA
1 GGGTTTA
124532736 GGGTTTA
1 GGGTTTA
124532743 GGGTTTA
1 GGGTTTA
124532750 GGGTTTA
1 GGGTTTA
124532757 GGGTTTA
1 GGGTTTA
124532764 GGGTTTA
1 GGGTTTA
124532771 GGGTTTA
1 GGGTTTA
124532778 GGGTTTA
1 GGGTTTA
124532785 GGGTTTA
1 GGGTTTA
124532792 GGGTTTA
1 GGGTTTA
124532799 GGGTTTA
1 GGGTTTA
124532806 GGGTTTA
1 GGGTTTA
124532813 GGGTTTA
1 GGGTTTA
124532820 GGGTTTTA
1 GGG-TTTA
124532828 GGGTTTA
1 GGGTTTA
124532835 GGGTTTA
1 GGGTTTA
124532842 GGGTTTA
1 GGGTTTA
124532849 GGGTTTA
1 GGGTTTA
124532856 GGGTTTA
1 GGGTTTA
124532863 GGGTTTA
1 GGGTTTA
124532870 GGGTTTA
1 GGGTTTA
124532877 GGGTTTA
1 GGGTTTA
124532884 GGGTTTA
1 GGGTTTA
124532891 GGGTTTA
1 GGGTTTA
124532898 GGGTTTA
1 GGGTTTA
124532905 GGG-TTA
1 GGGTTTA
124532911 GGGTTTA
1 GGGTTTA
124532918 GGGTTTA
1 GGGTTTA
124532925 GGG-TTA
1 GGGTTTA
124532931 GGGTTTA
1 GGGTTTA
124532938 GGGTTTTA
1 GGG-TTTA
124532946 GGGTTTA
1 GGGTTTA
124532953 GGGTTTA
1 GGGTTTA
124532960 GGGTTTA
1 GGGTTTA
124532967 GGGTTTA
1 GGGTTTA
124532974 GGGTTTA
1 GGGTTTA
124532981 GGGTTTA
1 GGGTTTA
124532988 GGGTTTA
1 GGGTTTA
124532995 GGG-TTA
1 GGGTTTA
124533001 GGGTTTA
1 GGGTTTA
124533008 GGGTTTA
1 GGGTTTA
124533015 GGGTTTA
1 GGGTTTA
124533022 GGGTTTA
1 GGGTTTA
124533029 GGGTTTA
1 GGGTTTA
124533036 GGGTTTA
1 GGGTTTA
124533043 GGGTTTA
1 GGGTTTA
124533050 GGG-TTA
1 GGGTTTA
124533056 -GGTTTA
1 GGGTTTA
124533062 GGGTTTA
1 GGGTTTA
124533069 GGGTTTA
1 GGGTTTA
124533076 GGGTTTA
1 GGGTTTA
124533083 GGGTTTA
1 GGGTTTA
124533090 -GGTTTA
1 GGGTTTA
124533096 GGGTTTTA
1 GGG-TTTA
124533104 GGGTTTA
1 GGGTTTA
124533111 GGGTTTA
1 GGGTTTA
124533118 GGGTTTA
1 GGGTTTA
124533125 GGGTTTA
1 GGGTTTA
124533132 GGGTTTA
1 GGGTTTA
124533139 GGGTTTA
1 GGGTTTA
124533146 GGGTTTA
1 GGGTTTA
124533153 GGGTTTA
1 GGGTTTA
124533160 GGGTTTA
1 GGGTTTA
124533167 -GGTTTA
1 GGGTTTA
124533173 GGGTTTA
1 GGGTTTA
124533180 GGGTTTA
1 GGGTTTA
124533187 GGGTTTA
1 GGGTTTA
124533194 GGGTTTA
1 GGGTTTA
124533201 GGGTTTA
1 GGGTTTA
124533208 GGGTTTA
1 GGGTTTA
124533215 GGGTTTA
1 GGGTTTA
124533222 GGG-TTA
1 GGGTTTA
124533228 GGGTTTA
1 GGGTTTA
124533235 GGGTTTA
1 GGGTTTA
124533242 -GGTTTA
1 GGGTTTA
124533248 GGGTTTA
1 GGGTTTA
124533255 GGGTTTA
1 GGGTTTA
124533262 GGGTTTA
1 GGGTTTA
124533269 GGGTTTA
1 GGGTTTA
124533276 GGGTTTA
1 GGGTTTA
124533283 GGGTTTA
1 GGGTTTA
124533290 GGGTTTA
1 GGGTTTA
124533297 GGGTTTA
1 GGGTTTA
124533304 GGGTTTTA
1 GGG-TTTA
124533312 GGGTTTA
1 GGGTTTA
124533319 GGGTTTTA
1 GGG-TTTA
124533327 GGGTTTA
1 GGGTTTA
124533334 GGGTTTA
1 GGGTTTA
124533341 GGGTTTA
1 GGGTTTA
124533348 GGGTTTTA
1 GGG-TTTA
124533356 GGGTTTTA
1 GGG-TTTA
124533364 GGGTTTA
1 GGGTTTA
124533371 GGGTTTA
1 GGGTTTA
124533378 GGGTTTA
1 GGGTTTA
124533385 -GGTTTA
1 GGGTTTA
124533391 GGG-TTA
1 GGGTTTA
124533397 -GGTTTA
1 GGGTTTA
124533403 GGGTTTA
1 GGGTTTA
124533410 GGGTTTA
1 GGGTTTA
124533417 GGGTTTA
1 GGGTTTA
124533424 GGGTTTA
1 GGGTTTA
124533431 GGGTTTA
1 GGGTTTA
124533438 GGGTTTA
1 GGGTTTA
124533445 GGGTTTA
1 GGGTTTA
124533452 GGGTTTA
1 GGGTTTA
124533459 GGGTTTTA
1 GGG-TTTA
124533467 GGG-TTA
1 GGGTTTA
124533473 GGGTTTTA
1 GGG-TTTA
124533481 GGGTTTA
1 GGGTTTA
124533488 GGGTTTTA
1 GGG-TTTA
124533496 GGGTTTA
1 GGGTTTA
124533503 GGGTTTA
1 GGGTTTA
124533510 GGGTTTA
1 GGGTTTA
124533517 GGGTTTA
1 GGGTTTA
124533524 GGGTTTA
1 GGGTTTA
124533531 GGGTTTA
1 GGGTTTA
124533538 GGGTTTA
1 GGGTTTA
124533545 GGGTTTA
1 GGGTTTA
124533552 GGGTTTA
1 GGGTTTA
124533559 GGG-TTA
1 GGGTTTA
124533565 GGGTTTA
1 GGGTTTA
124533572 GGGTTTA
1 GGGTTTA
124533579 GGGTTTA
1 GGGTTTA
124533586 GGGTTTA
1 GGGTTTA
124533593 GGGTTTA
1 GGGTTTA
124533600 GGGTTTA
1 GGGTTTA
124533607 GGGTTTTA
1 GGG-TTTA
124533615 GGGTTTA
1 GGGTTTA
124533622 GGGTTTA
1 GGGTTTA
124533629 -GGTTTA
1 GGGTTTA
124533635 GGG-TTA
1 GGGTTTA
124533641 GGGTTTA
1 GGGTTTA
124533648 GGGTTTA
1 GGGTTTA
124533655 GGGTTTA
1 GGGTTTA
124533662 GGGTTTA
1 GGGTTTA
124533669 GGGTTTA
1 GGGTTTA
124533676 GGGTTTTA
1 GGG-TTTA
124533684 GGGTTTA
1 GGGTTTA
124533691 GGGTTTA
1 GGGTTTA
124533698 GGGTTTA
1 GGGTTTA
124533705 GGGTTTTA
1 GGG-TTTA
124533713 GGGTTTA
1 GGGTTTA
124533720 GGGTTTA
1 GGGTTTA
124533727 GGGTTTA
1 GGGTTTA
124533734 GGGTTTA
1 GGGTTTA
124533741 GGGTTTA
1 GGGTTTA
124533748 GGGTTTA
1 GGGTTTA
124533755 GGGTTTA
1 GGGTTTA
124533762 GGGTTTA
1 GGGTTTA
124533769 GGGTTTA
1 GGGTTTA
124533776 GGGTTTA
1 GGGTTTA
124533783 GGGTTTA
1 GGGTTTA
124533790 GGGTTTA
1 GGGTTTA
124533797 GGGTTTA
1 GGGTTTA
124533804 GGGTTTA
1 GGGTTTA
124533811 GGGTTTA
1 GGGTTTA
124533818 GGGTTTA
1 GGGTTTA
124533825 GGGTTTA
1 GGGTTTA
124533832 GGGTTTA
1 GGGTTTA
124533839 GGGTTTA
1 GGGTTTA
124533846 GGGTTTA
1 GGGTTTA
124533853 GGGTTTA
1 GGGTTTA
124533860 GGGTTTA
1 GGGTTTA
124533867 GGGTTTA
1 GGGTTTA
124533874 GGGTTTA
1 GGGTTTA
124533881 GGGTTTA
1 GGGTTTA
124533888 GGGTTTA
1 GGGTTTA
124533895 GGGTTTA
1 GGGTTTA
124533902 GGGTTTA
1 GGGTTTA
124533909 GGGTTTA
1 GGGTTTA
124533916 GGGTTTA
1 GGGTTTA
124533923 GGGTTTA
1 GGGTTTA
124533930 GGGTTTA
1 GGGTTTA
124533937 GGGTTTA
1 GGGTTTA
124533944 GGGTTTA
1 GGGTTTA
124533951 GGGTTTA
1 GGGTTTA
124533958 GGGTTTA
1 GGGTTTA
124533965 GGGTTTA
1 GGGTTTA
124533972 GGGTTTA
1 GGGTTTA
124533979 GGGTTTA
1 GGGTTTA
124533986 GGGTTTA
1 GGGTTTA
124533993 GGGTTTA
1 GGGTTTA
124534000 GGGTTTA
1 GGGTTTA
124534007 GGGTTTA
1 GGGTTTA
124534014 GGGTTTA
1 GGGTTTA
124534021 GGGTTTA
1 GGGTTTA
124534028 GGGTTTA
1 GGGTTTA
124534035 GGGTTTA
1 GGGTTTA
124534042 GGGTTTA
1 GGGTTTA
124534049 GGGTTTA
1 GGGTTTA
124534056 GGGTTTA
1 GGGTTTA
124534063 GGGTTTA
1 GGGTTTA
124534070 GGGTTTA
1 GGGTTTA
124534077 GGGTTTA
1 GGGTTTA
124534084 GGGTTTA
1 GGGTTTA
124534091 GGGTTTA
1 GGGTTTA
124534098 -GGTTTA
1 GGGTTTA
124534104 GGGTTTA
1 GGGTTTA
124534111 -GGTTTA
1 GGGTTTA
124534117 GGGTTTA
1 GGGTTTA
124534124 GGGTTTA
1 GGGTTTA
124534131 GGGTTTA
1 GGGTTTA
124534138 GGGTTTA
1 GGGTTTA
124534145 GGGTTTA
1 GGGTTTA
124534152 GGGTTTA
1 GGGTTTA
124534159 GGGTTTA
1 GGGTTTA
124534166 GGGTTTA
1 GGGTTTA
124534173 GGGTTTA
1 GGGTTTA
124534180 GGGTTTA
1 GGGTTTA
124534187 GGGTTTA
1 GGGTTTA
124534194 GGGTTTA
1 GGGTTTA
124534201 GGGTTTA
1 GGGTTTA
124534208 GGGTTTA
1 GGGTTTA
124534215 GGGTTTA
1 GGGTTTA
124534222 GGGTTTTA
1 GGG-TTTA
124534230 GGGTTTA
1 GGGTTTA
124534237 GGGTTTA
1 GGGTTTA
124534244 GGGTTTA
1 GGGTTTA
124534251 GGGTTTA
1 GGGTTTA
124534258 GGGTTTA
1 GGGTTTA
124534265 GGGTTTA
1 GGGTTTA
124534272 GGGTTTA
1 GGGTTTA
124534279 GGGTTTA
1 GGGTTTA
124534286 GGG-TTA
1 GGGTTTA
124534292 GGGTTTA
1 GGGTTTA
124534299 GGGTTTA
1 GGGTTTA
124534306 GGGTTTA
1 GGGTTTA
124534313 -GGTTTA
1 GGGTTTA
124534319 GGGTTTA
1 GGGTTTA
124534326 GGGTTTA
1 GGGTTTA
124534333 GGGTTTTA
1 GGG-TTTA
124534341 GGGTTTA
1 GGGTTTA
124534348 GGGTTTTA
1 GGG-TTTA
124534356 GGGTTTA
1 GGGTTTA
124534363 GGGTTTA
1 GGGTTTA
124534370 GGGTTTA
1 GGGTTTA
124534377 GGGTTTA
1 GGGTTTA
124534384 GGGTTTA
1 GGGTTTA
124534391 GGGTTTA
1 GGGTTTA
124534398 GGGTTTA
1 GGGTTTA
124534405 -GGTTTA
1 GGGTTTA
124534411 GGGTTTA
1 GGGTTTA
124534418 GGGTTTA
1 GGGTTTA
124534425 GGGTTTA
1 GGGTTTA
124534432 GGGTTTTA
1 GGG-TTTA
124534440 GGGTTTA
1 GGGTTTA
124534447 GGGTTTA
1 GGGTTTA
124534454 GGGTTTA
1 GGGTTTA
124534461 GGGTTTA
1 GGGTTTA
124534468 GGGTTTA
1 GGGTTTA
124534475 GGGTTTA
1 GGGTTTA
124534482 GGGTTTA
1 GGGTTTA
124534489 GGGTTTA
1 GGGTTTA
124534496 GGGTTTA
1 GGGTTTA
124534503 GGGTTTA
1 GGGTTTA
124534510 GGGTTTA
1 GGGTTTA
124534517 GGGTTTA
1 GGGTTTA
124534524 GGGTTTA
1 GGGTTTA
124534531 GGGTTTA
1 GGGTTTA
124534538 GGGTTTA
1 GGGTTTA
124534545 GGGTTTA
1 GGGTTTA
124534552 GGG-TTA
1 GGGTTTA
124534558 -GGTTTA
1 GGGTTTA
124534564 GGGTTTA
1 GGGTTTA
124534571 GGGTTTA
1 GGGTTTA
124534578 GGGTTTA
1 GGGTTTA
124534585 GGGTTTA
1 GGGTTTA
124534592 GGGTTTA
1 GGGTTTA
124534599 -GGTTTA
1 GGGTTTA
124534605 GGGTTTA
1 GGGTTTA
124534612 GGGTTTA
1 GGGTTTA
124534619 GGGTTTA
1 GGGTTTA
124534626 GGGTTTA
1 GGGTTTA
124534633 GGGTTTA
1 GGGTTTA
124534640 GGGTTTA
1 GGGTTTA
124534647 GGGTTTA
1 GGGTTTA
124534654 GGGTTTTA
1 GGG-TTTA
124534662 GGGTTTA
1 GGGTTTA
124534669 GGGTTTA
1 GGGTTTA
124534676 GGGTTTA
1 GGGTTTA
124534683 GGGTTTA
1 GGGTTTA
124534690 GGGTTTA
1 GGGTTTA
124534697 GGGTTTA
1 GGGTTTA
124534704 GGGTTTA
1 GGGTTTA
124534711 GGGTTTA
1 GGGTTTA
124534718 GGGTTTA
1 GGGTTTA
124534725 GGGTTTA
1 GGGTTTA
124534732 GGGTTTA
1 GGGTTTA
124534739 GGGTTTA
1 GGGTTTA
124534746 GGGTTTA
1 GGGTTTA
124534753 GGGTTTA
1 GGGTTTA
124534760 GGGTTTA
1 GGGTTTA
124534767 GGGTTTA
1 GGGTTTA
124534774 GGGTTTA
1 GGGTTTA
124534781 GGGTTTA
1 GGGTTTA
124534788 GGGTTT-
1 GGGTTTA
124534794 GGGTTTTA
1 GGG-TTTA
124534802 -GGTTTA
1 GGGTTTA
124534808 GGGTTTA
1 GGGTTTA
124534815 GGGTTTA
1 GGGTTTA
124534822 GGGTTTA
1 GGGTTTA
124534829 GGGTTTA
1 GGGTTTA
124534836 GGGTTTA
1 GGGTTTA
124534843 GGGTTTA
1 GGGTTTA
124534850 GGGTTTA
1 GGGTTTA
124534857 GGGTTTA
1 GGGTTTA
124534864 GGGTTTA
1 GGGTTTA
124534871 GGGTTTA
1 GGGTTTA
124534878 GGGTTTA
1 GGGTTTA
124534885 GGGTTTA
1 GGGTTTA
124534892 GGGTTTA
1 GGGTTTA
124534899 GGGTTTA
1 GGGTTTA
124534906 -GGTTTA
1 GGGTTTA
124534912 GGGTTTA
1 GGGTTTA
124534919 GGGTTTA
1 GGGTTTA
124534926 GGGTTTA
1 GGGTTTA
124534933 GGGTTTA
1 GGGTTTA
124534940 GGGTTTA
1 GGGTTTA
124534947 GGGTTTA
1 GGGTTTA
124534954 GGGTTTA
1 GGGTTTA
124534961 GGGTTTA
1 GGGTTTA
124534968 GGGTTTA
1 GGGTTTA
124534975 GGGTTTA
1 GGGTTTA
124534982 GGGTTTA
1 GGGTTTA
124534989 GGGTTTA
1 GGGTTTA
124534996 GGGTTTA
1 GGGTTTA
124535003 GGGTTTA
1 GGGTTTA
124535010 GGGTTTA
1 GGGTTTA
124535017 GGGTTTA
1 GGGTTTA
124535024 -GGTTTA
1 GGGTTTA
124535030 GGGTTTA
1 GGGTTTA
124535037 GGGTTTA
1 GGGTTTA
124535044 GGGTTTA
1 GGGTTTA
124535051 GGGTTTA
1 GGGTTTA
124535058 GGGTTTA
1 GGGTTTA
124535065 GGGTTTA
1 GGGTTTA
124535072 GGGTTTA
1 GGGTTTA
124535079 GGGTTTA
1 GGGTTTA
124535086 GGGTTTA
1 GGGTTTA
124535093 GGGTTTA
1 GGGTTTA
124535100 GGGTTTA
1 GGGTTTA
124535107 GGGTTTA
1 GGGTTTA
124535114 GGGTTTA
1 GGGTTTA
124535121 GGGTTTA
1 GGGTTTA
124535128 GGGTTTA
1 GGGTTTA
124535135 GGGTTTA
1 GGGTTTA
124535142 GGGTTTTA
1 GGG-TTTA
124535150 GGGTTTA
1 GGGTTTA
124535157 GGGTTTA
1 GGGTTTA
124535164 GGGTTTA
1 GGGTTTA
124535171 GGGTTTA
1 GGGTTTA
124535178 GGGTTTA
1 GGGTTTA
124535185 GGGTTTA
1 GGGTTTA
124535192 GGGTTTA
1 GGGTTTA
124535199 GGGTTTA
1 GGGTTTA
124535206 GGGTTTA
1 GGGTTTA
124535213 GGG-TTA
1 GGGTTTA
124535219 GGGTTTA
1 GGGTTTA
124535226 GGGTTTA
1 GGGTTTA
*
124535233 GGTTTTA
1 GGGTTTA
124535240 GGGTTTA
1 GGGTTTA
124535247 GGGTTTA
1 GGGTTTA
124535254 GGGTTTA
1 GGGTTTA
124535261 GGGTTTA
1 GGGTTTA
124535268 GGGTTTA
1 GGGTTTA
124535275 GGGTTTA
1 GGGTTTA
124535282 GGGTTTA
1 GGGTTTA
124535289 GGGTTTA
1 GGGTTTA
124535296 GGGTTTA
1 GGGTTTA
124535303 GGGTTTA
1 GGGTTTA
124535310 GGGTTTA
1 GGGTTTA
124535317 GGGTTTA
1 GGGTTTA
124535324 GGGTTTA
1 GGGTTTA
124535331 -GGTTTA
1 GGGTTTA
124535337 GGGTTTA
1 GGGTTTA
124535344 GGGTTTA
1 GGGTTTA
124535351 GGGTTTA
1 GGGTTTA
124535358 GGGTTTA
1 GGGTTTA
124535365 GGGTTTA
1 GGGTTTA
124535372 GGGTTTA
1 GGGTTTA
124535379 GGGTTTA
1 GGGTTTA
124535386 GGGTTTA
1 GGGTTTA
124535393 GGGTTTA
1 GGGTTTA
124535400 GGGTTTA
1 GGGTTTA
124535407 GGGTTTA
1 GGGTTTA
124535414 -GGTTTA
1 GGGTTTA
124535420 GGGTTTA
1 GGGTTTA
124535427 GGGTTTA
1 GGGTTTA
124535434 GGGTTTA
1 GGGTTTA
124535441 GGGTTTA
1 GGGTTTA
124535448 GGGTTTA
1 GGGTTTA
124535455 GGGTTTA
1 GGGTTTA
124535462 GGGTTTA
1 GGGTTTA
124535469 GGGTTTA
1 GGGTTTA
124535476 GGGTTTA
1 GGGTTTA
124535483 GGGTTTA
1 GGGTTTA
124535490 GGGTTTA
1 GGGTTTA
124535497 GGGTTTA
1 GGGTTTA
124535504 GGGTTTA
1 GGGTTTA
124535511 GGGTTTA
1 GGGTTTA
124535518 GGGTTTA
1 GGGTTTA
124535525 GGGTTTA
1 GGGTTTA
124535532 GGGTTTA
1 GGGTTTA
124535539 GGGTTTA
1 GGGTTTA
124535546 GGGTTTA
1 GGGTTTA
124535553 GGGTTTA
1 GGGTTTA
124535560 GGGTTTA
1 GGGTTTA
124535567 GGGTTTA
1 GGGTTTA
124535574 GGGTTTA
1 GGGTTTA
124535581 GGGTTTA
1 GGGTTTA
124535588 GGGTTTA
1 GGGTTTA
124535595 GGGTTTA
1 GGGTTTA
124535602 GGGTTTA
1 GGGTTTA
124535609 GGGTTTA
1 GGGTTTA
124535616 GGGTTTA
1 GGGTTTA
124535623 GGGTTTA
1 GGGTTTA
124535630 GGGTTT-
1 GGGTTTA
124535636 GGG-TT-
1 GGGTTTA
124535641 GGGTTTA
1 GGGTTTA
124535648 GGGTTTA
1 GGGTTTA
124535655 GGGTTTTA
1 GGG-TTTA
124535663 GGGTTTA
1 GGGTTTA
124535670 GGGTTTA
1 GGGTTTA
124535677 GGGTTTA
1 GGGTTTA
124535684 GGGTTTA
1 GGGTTTA
124535691 -GGTTTA
1 GGGTTTA
124535697 GGGTTTA
1 GGGTTTA
124535704 GGGTTTA
1 GGGTTTA
124535711 GGGTTTA
1 GGGTTTA
124535718 GGGTTTTA
1 GGG-TTTA
124535726 GGGTTTA
1 GGGTTTA
124535733 GGGTTTA
1 GGGTTTA
124535740 GGGTTTA
1 GGGTTTA
124535747 -GGTTTA
1 GGGTTTA
124535753 GGGTTTA
1 GGGTTTA
124535760 GGGTTTA
1 GGGTTTA
124535767 GGG-TT-
1 GGGTTTA
124535772 GGGTTTA
1 GGGTTTA
124535779 GGGTTTTA
1 GGG-TTTA
124535787 GGGTTTA
1 GGGTTTA
124535794 GGGTTTA
1 GGGTTTA
124535801 GGGTTTA
1 GGGTTTA
124535808 GGGTTTA
1 GGGTTTA
124535815 GGG-TTA
1 GGGTTTA
124535821 GGGTTTA
1 GGGTTTA
124535828 GGGTTTA
1 GGGTTTA
124535835 GGGTTTA
1 GGGTTTA
124535842 GGGTTTA
1 GGGTTTA
124535849 GGGTTTA
1 GGGTTTA
124535856 GGGTTTA
1 GGGTTTA
124535863 GGGTTTA
1 GGGTTTA
124535870 GGGTTTA
1 GGGTTTA
124535877 GGGTTTA
1 GGGTTTA
124535884 GGGTTTA
1 GGGTTTA
124535891 GGGTTTA
1 GGGTTTA
124535898 GGGTTTA
1 GGGTTTA
124535905 GGGTTTA
1 GGGTTTA
124535912 GGGTTTA
1 GGGTTTA
124535919 GGG-TTA
1 GGGTTTA
124535925 GGGTTTA
1 GGGTTTA
124535932 GGGTTTA
1 GGGTTTA
124535939 GGGTTTA
1 GGGTTTA
124535946 GGGTTTA
1 GGGTTTA
124535953 GGGTTTA
1 GGGTTTA
124535960 GGGTTTA
1 GGGTTTA
124535967 GGGTTTA
1 GGGTTTA
124535974 GGGTTTA
1 GGGTTTA
124535981 GGGTTTA
1 GGGTTTA
124535988 GGGTTTA
1 GGGTTTA
124535995 GGGTTTA
1 GGGTTTA
124536002 GGGTTTA
1 GGGTTTA
124536009 GGGTTTA
1 GGGTTTA
124536016 GGGTTTA
1 GGGTTTA
124536023 GGGTTTA
1 GGGTTTA
124536030 GGGTTTA
1 GGGTTTA
124536037 GGGTTTA
1 GGGTTTA
124536044 GGGTTTA
1 GGGTTTA
124536051 GGGTTTA
1 GGGTTTA
124536058 GGGTTTA
1 GGGTTTA
124536065 GGGTTTA
1 GGGTTTA
124536072 GGGTTTA
1 GGGTTTA
124536079 GGGTTTA
1 GGGTTTA
124536086 GGGTTTA
1 GGGTTTA
124536093 GGGTTTA
1 GGGTTTA
124536100 GGGTTTA
1 GGGTTTA
124536107 -GGTTTA
1 GGGTTTA
124536113 GGGTTTA
1 GGGTTTA
124536120 GGGTTTA
1 GGGTTTA
124536127 GGGTTTTA
1 GGG-TTTA
124536135 GGGTTTA
1 GGGTTTA
124536142 GGGTTTA
1 GGGTTTA
124536149 GGGTTTA
1 GGGTTTA
124536156 GGGTTTA
1 GGGTTTA
124536163 GGGTTTA
1 GGGTTTA
124536170 GGGTTTA
1 GGGTTTA
124536177 GGGTTTA
1 GGGTTTA
124536184 GGGTTTA
1 GGGTTTA
124536191 GGGTTTA
1 GGGTTTA
124536198 GGGTTTA
1 GGGTTTA
124536205 GGGTTTA
1 GGGTTTA
124536212 GGGTTTA
1 GGGTTTA
124536219 GGGTTTA
1 GGGTTTA
124536226 -GGTTTA
1 GGGTTTA
124536232 GGGTTTA
1 GGGTTTA
124536239 GGGTTTA
1 GGGTTTA
124536246 GGGTTTA
1 GGGTTTA
124536253 GGGTTTA
1 GGGTTTA
124536260 GGGTTTA
1 GGGTTTA
124536267 GGGTTTA
1 GGGTTTA
124536274 GGGTTTA
1 GGGTTTA
124536281 GGGTTTA
1 GGGTTTA
124536288 GGGTTTA
1 GGGTTTA
124536295 GGGTTTA
1 GGGTTTA
124536302 GGGTTTA
1 GGGTTTA
124536309 GGGTTTA
1 GGGTTTA
124536316 GGGTTTA
1 GGGTTTA
124536323 GGGTTTA
1 GGGTTTA
124536330 GGGTTTA
1 GGGTTTA
124536337 GGGTTTA
1 GGGTTTA
124536344 GGGTTTA
1 GGGTTTA
124536351 GGGTTTA
1 GGGTTTA
124536358 GGGTTTA
1 GGGTTTA
124536365 GGGTTTA
1 GGGTTTA
124536372 GGGTTTA
1 GGGTTTA
124536379 GGGTTTA
1 GGGTTTA
124536386 GGGTTTA
1 GGGTTTA
124536393 GGGTTTA
1 GGGTTTA
124536400 GGGTTTA
1 GGGTTTA
124536407 GGGTTTA
1 GGGTTTA
124536414 GGGTTTA
1 GGGTTTA
124536421 -GG-TTA
1 GGGTTTA
124536426 -GGTTTA
1 GGGTTTA
124536432 GGGTTTA
1 GGGTTTA
124536439 GGGTTTA
1 GGGTTTA
124536446 GGGTTTA
1 GGGTTTA
124536453 GGGTTTA
1 GGGTTTA
124536460 -GGTTTA
1 GGGTTTA
124536466 GGG-TTA
1 GGGTTTA
124536472 GGGTTTA
1 GGGTTTA
124536479 GGGTTTA
1 GGGTTTA
124536486 GGGTTTA
1 GGGTTTA
124536493 -GGTTTA
1 GGGTTTA
124536499 GGGTTTA
1 GGGTTTA
124536506 GGGTTTA
1 GGGTTTA
124536513 GGGTTTA
1 GGGTTTA
124536520 GGGTTTA
1 GGGTTTA
124536527 GGGTTTA
1 GGGTTTA
124536534 GGGTTTA
1 GGGTTTA
124536541 GGGTTTA
1 GGGTTTA
124536548 GGGTTTA
1 GGGTTTA
124536555 GGGTTTA
1 GGGTTTA
124536562 GGGTTTA
1 GGGTTTA
124536569 GGGTTTA
1 GGGTTTA
124536576 GGGTTTA
1 GGGTTTA
124536583 GGGTTTA
1 GGGTTTA
124536590 GGGTTTA
1 GGGTTTA
124536597 -GGTTTA
1 GGGTTTA
124536603 GGGTTTTA
1 GGG-TTTA
124536611 GGGTTTA
1 GGGTTTA
124536618 GGGTTTA
1 GGGTTTA
124536625 GGGTTTA
1 GGGTTTA
124536632 GGGTTTA
1 GGGTTTA
124536639 GGGTTTA
1 GGGTTTA
124536646 GGGTTTA
1 GGGTTTA
124536653 -GGTTTA
1 GGGTTTA
124536659 GGGTTTA
1 GGGTTTA
124536666 GGGTTTA
1 GGGTTTA
124536673 GGGTTTA
1 GGGTTTA
124536680 -GGTTTA
1 GGGTTTA
124536686 GGGTTTA
1 GGGTTTA
124536693 GGGTTTA
1 GGGTTTA
124536700 GGG-TTA
1 GGGTTTA
124536706 GGGTTTA
1 GGGTTTA
124536713 GGGTTTA
1 GGGTTTA
124536720 GGGTTTA
1 GGGTTTA
124536727 GGGTTTA
1 GGGTTTA
124536734 GGGTTTA
1 GGGTTTA
124536741 GGGTTTA
1 GGGTTTA
124536748 GGGTTTA
1 GGGTTTA
124536755 GGGTTTA
1 GGGTTTA
124536762 GGGTTTA
1 GGGTTTA
124536769 GGGTTTA
1 GGGTTTA
124536776 GGGTTTA
1 GGGTTTA
124536783 GGGTTTA
1 GGGTTTA
124536790 GGGTTTA
1 GGGTTTA
124536797 GGGTTTA
1 GGGTTTA
124536804 GGGTTTA
1 GGGTTTA
124536811 GGGTTTA
1 GGGTTTA
124536818 GGGTTTA
1 GGGTTTA
124536825 GGGTTTA
1 GGGTTTA
124536832 GGGTTT
1 GGGTTT
Statistics
Matches: 4401, Mismatches: 27, Indels: 182
0.95 0.01 0.04
Matches are distributed among these distances:
5 22 0.00
6 283 0.06
7 3867 0.88
8 225 0.05
9 4 0.00
ACGTcount: A:0.14, C:0.01, G:0.43, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Done.