Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 5 of 427
Found at i:1288015 original size:25 final size:23
Alignment explanation
Indices: 1287959--1288023 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
1287949 TCTCATTTTT
*
1287959 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
1287978 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
1288001 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
1288024 AATTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:1291359 original size:8 final size:8
Alignment explanation
Indices: 1291346--1291376 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
1291336 TATGCACCAA
1291346 AAAGAACG
1 AAAGAACG
1291354 AAAGAACG
1 AAAGAACG
1291362 AAAGAACG
1 AAAGAACG
1291370 AAAGAAC
1 AAAGAAC
1291377 AGCTTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.13, G:0.23, T:0.00
Consensus pattern (8 bp):
AAAGAACG
Found at i:1297391 original size:14 final size:14
Alignment explanation
Indices: 1297372--1297401 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1297362 TATTTAATTT
*
1297372 AATAAATAAATATA
1 AATAAATAAAAATA
1297386 AATAAATAAAAATA
1 AATAAATAAAAATA
1297400 AA
1 AA
1297402 CTATTTAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AATAAATAAAAATA
Found at i:1299083 original size:11 final size:12
Alignment explanation
Indices: 1299060--1299092 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1299050 AAAAATAACT
1299060 AAAAAAATATAA
1 AAAAAAATATAA
1299072 AAAAAAAT-TAA
1 AAAAAAATATAA
1299083 AACAAAAATA
1 AA-AAAAATA
1299093 CATTTAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAATATAA
Found at i:1300450 original size:2 final size:2
Alignment explanation
Indices: 1300443--1300472 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1300433 ACATAGAATC
*
1300443 TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1300473 CTTTTTTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:1301621 original size:29 final size:29
Alignment explanation
Indices: 1301552--1301628 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 29
1301542 TTAACGGCTT
1301552 AGTGACTAAAATGTTACGACATGTTAACATAA
1 AGTGACTAAAATG-TA--ACATGTTAACATAA
*
1301584 A-TGACTAAAATGTAACATTTTAA-ATATA
1 AGTGACTAAAATGTAACATGTTAACATA-A
*
1301612 AGTGACTAAAATATAAC
1 AGTGACTAAAATGTAAC
1301629 CTAAGGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 3 0.07
28 10 0.24
29 14 0.34
30 2 0.05
31 11 0.27
32 1 0.02
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (29 bp):
AGTGACTAAAATGTAACATGTTAACATAA
Found at i:1302713 original size:2 final size:2
Alignment explanation
Indices: 1302708--1302746 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1302698 AAAAAAAGTA
1302708 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1302747 AAAGATAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1303587 original size:32 final size:30
Alignment explanation
Indices: 1303522--1303587 Score: 71
Period size: 32 Copynumber: 2.1 Consensus size: 30
1303512 AGCCTATATC
* *
1303522 TTTATAATTTTTAAAGTACTAAATCAAATT
1 TTTATAATTTTTAAAGGACTAAATCAAAAT
*
1303552 TTTATCATTTTTAGATAGGACTAAAGT-AAAAT
1 TTTATAATTTTTA-A-AGGACTAAA-TCAAAAT
1303584 TTTA
1 TTTA
1303588 CCTAAAACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 12 0.40
31 1 0.03
32 16 0.53
33 1 0.03
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTATAATTTTTAAAGGACTAAATCAAAAT
Found at i:1309244 original size:12 final size:12
Alignment explanation
Indices: 1309223--1309252 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1309213 CGTTTTGTAA
1309223 TTCTTCATCGTC
1 TTCTTCATCGTC
*
1309235 TTCTTTATCGTC
1 TTCTTCATCGTC
1309247 TTCTTC
1 TTCTTC
1309253 TTGTTATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.30, G:0.07, T:0.57
Consensus pattern (12 bp):
TTCTTCATCGTC
Found at i:1311665 original size:30 final size:30
Alignment explanation
Indices: 1311631--1311691 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
1311621 GTCATTTAAA
1311631 CAAGAGTCTTAATCACTACTCCAAACAAGT
1 CAAGAGTCTTAATCACTACTCCAAACAAGT
1311661 CAAGAGTCTTAATCACTACTCCAAACAAGT
1 CAAGAGTCTTAATCACTACTCCAAACAAGT
1311691 C
1 C
1311692 TAAGTTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.23
Consensus pattern (30 bp):
CAAGAGTCTTAATCACTACTCCAAACAAGT
Found at i:1313421 original size:25 final size:24
Alignment explanation
Indices: 1313372--1313421 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
1313362 TCAAAGTAAA
* *
1313372 AAAAAATTATATTATTTTTTGCAT
1 AAAAAATTATATTATTTTATACAT
1313396 AAAAAATTAT-TATATTTTAATACAT
1 AAAAAATTATAT-TATTTT-ATACAT
1313421 A
1 A
1313422 TGAATTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 1 0.05
24 16 0.73
25 5 0.23
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
AAAAAATTATATTATTTTATACAT
Found at i:1329119 original size:18 final size:18
Alignment explanation
Indices: 1329083--1329119 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1329073 TTGAATCAAT
*
1329083 TACAAAGGAGCAATGACA
1 TACAAAGGAGCAATAACA
*
1329101 TACAAAGGAGCACTAACA
1 TACAAAGGAGCAATAACA
1329119 T
1 T
1329120 GTTTAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.14
Consensus pattern (18 bp):
TACAAAGGAGCAATAACA
Found at i:1330566 original size:21 final size:21
Alignment explanation
Indices: 1330542--1330581 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1330532 TTATGCCACA
*
1330542 TCAGCATTTTCATCCTGAATT
1 TCAGCATTTTAATCCTGAATT
1330563 TCAGCATTTTAATCCTGAA
1 TCAGCATTTTAATCCTGAA
1330582 AAAAATCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (21 bp):
TCAGCATTTTAATCCTGAATT
Found at i:1331881 original size:17 final size:18
Alignment explanation
Indices: 1331851--1331884 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1331841 TTATTTAGAT
1331851 TTAATTTTAGCATTTATC
1 TTAATTTTAGCATTTATC
*
1331869 TTAA-TTTATCATTTAT
1 TTAATTTTAGCATTTAT
1331885 TACCTTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (18 bp):
TTAATTTTAGCATTTATC
Found at i:1331911 original size:20 final size:20
Alignment explanation
Indices: 1331862--1331911 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
1331852 TAATTTTAGC
*
1331862 ATTTATCTTAATTTATCATTT
1 ATTTATCTTTATTTAT-ATTT
*
1331883 A-TTACCTTTATTTAT-TTGT
1 ATTTATCTTTATTTATATT-T
1331902 ATTTATCTTT
1 ATTTATCTTT
1331912 TAAAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
20 19 0.79
21 1 0.04
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTATCTTTATTTATATTT
Found at i:1337694 original size:56 final size:55
Alignment explanation
Indices: 1337596--1337704 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 55
1337586 TTTCTTATTA
*
1337596 CATAATACGTCCCAACTCAGAAAAAAAACACATTTATGTTTTTTTTAGTGTTCCATTG
1 CATAATACGTCCCAACGCAG-AAAAAAACACATTTATG--TTTTTTAGTGTTCCATTG
* *
1337654 CATAATCCGTCCCAACGCAG-GAAAAACACATTTATGTTTTTTAGTGTTCCA
1 CATAATACGTCCCAACGCAGAAAAAAACACATTTATGTTTTTTAGTGTTCCA
1337705 AACAATATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
54 15 0.31
56 15 0.31
58 18 0.38
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (55 bp):
CATAATACGTCCCAACGCAGAAAAAAACACATTTATGTTTTTTAGTGTTCCATTG
Found at i:1342239 original size:15 final size:15
Alignment explanation
Indices: 1342219--1342249 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1342209 TTTACTTTCC
1342219 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
1342234 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
1342249 A
1 A
1342250 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:1349787 original size:44 final size:44
Alignment explanation
Indices: 1349675--1350260 Score: 451
Period size: 44 Copynumber: 13.4 Consensus size: 44
1349665 GACGGGGGGT
* * * * * * *
1349675 AGATCAAAGATAGCAGATATCGCCTTCCTGAG-TTACAGTGAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
* ** *
1349719 AGATCAAAGATTTCAG-CATGGCATCCCTGTGCTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
*
1349762 A-AGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * * *
1349806 AGATCGAATATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
** * *
1349851 AGATCGAAGATTTC-G-CATGCCATCCCTGTGCTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * *
1349893 A-AGTTGAAAATAGCAGATTTGGCATCCTTATGCTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * **
1349937 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
* ** *
1349982 AGATCAAAGATTTCAG-CATGGCATCCCTGTGCTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * *
1350025 A-AGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * * *
1350069 AGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA-C
* ** * * *
1350114 AGATCAAAGATTTCAG-CATGGCATCCCTATGTTTATAGGGAAC
1 AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * * *
1350157 A-AGTTGAAGATAGCAGATTTGACATCCCTATGTTTATA-GGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
* * * *
1350200 A-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
1350244 AGATCGAAGA-AGCAGAT
1 AGATCGAAGATAGCAGAT
1350261 CGAAGAAGCA
Statistics
Matches: 427, Mismatches: 97, Indels: 37
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.00
42 12 0.03
43 110 0.26
44 260 0.61
45 44 0.10
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
Found at i:1350067 original size:132 final size:132
Alignment explanation
Indices: 1349675--1350253 Score: 837
Period size: 132 Copynumber: 4.4 Consensus size: 132
1349665 GACGGGGGGT
* * * *
1349675 AGATCAAAGATAGCAGATATCG-CCTTCCTGAG-TTACAGTGAAGCAGATCAAAGATTTCAGCAT
1 AGATCGAAGATAGCAGATCT-GACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCAT
* *
1349738 GGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGG
65 GGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGG
1349803 AAC
130 AAC
* * *
1349806 AGATCGAATATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGCAGATCGAAGATTTC-GCATG
1 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* * *
1349870 CCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCTTATGCTTATAGGGA
66 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
1349935 AC
131 AC
*
1349937 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCAAAGATTTCAGCATG
1 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* *
1350002 GCATCCCTGTGCTTATAGGGAACAAGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAGGGA
66 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
1350067 AC
131 AC
*
1350069 AGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
1 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
* * * *
1350134 GCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGACATCCCTATGTTTATA-GGA
66 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
1350198 AC
131 AC
* * * * * * * * *
1350200 A-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGA
1 AGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGA
1350254 AGCAGATCGA
Statistics
Matches: 406, Mismatches: 38, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
130 12 0.03
131 184 0.45
132 210 0.52
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTATGCTTATAGGGA
AC
Found at i:1350112 original size:263 final size:261
Alignment explanation
Indices: 1349675--1350233 Score: 852
Period size: 263 Copynumber: 2.1 Consensus size: 261
1349665 GACGGGGGGT
* * * *
1349675 AGATCAAAGATAGCAGATATCGCCTTCCTGAGTTACAGTGAAGCAGATCAAAGATTTCAGCATGG
1 AGATCGAAGATAGCAGATAT-GCATTCCTGTGTTACAGTAAAGCAGATCAAAGATTTCAGCATGG
1349740 CATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA
65 CATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAA
* * * *
1349805 CAGATCGAATATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGCAGATCGAAGATTTC-GCAT
130 CAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCAT
* * *
1349869 GCCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCTTATGCTTATAGGG
195 GCCATCCCTATGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGACATCCCTATGCTTATA-GG
1349934 AAC
259 AAC
*
1349937 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCAAAGATTTCAGCATG
1 AGATCGAAGATAGCAGATATG-CATTCCTGTG-TTACAGTAAAGCAGATCAAAGATTTCAGCATG
* *
1350002 GCATCCCTGTGCTTATAGGGAACAAGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAGGGA
64 GCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGA
1350067 ACAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA
129 ACAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA
* * * *
1350132 TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGACATCCCTATGTTTATAGG
194 TGCCATCCCTATGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGACATCCCTATGCTTATAGG
1350197 AAC
259 AAC
* * * *
1350200 A-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTT
1 AGA-TCGAAGATAGCAGATAT-GCATTCCTGTGTT
1350234 TATAGGGAAC
Statistics
Matches: 270, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
261 1 0.00
262 29 0.11
263 180 0.67
264 60 0.22
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (261 bp):
AGATCGAAGATAGCAGATATGCATTCCTGTGTTACAGTAAAGCAGATCAAAGATTTCAGCATGGC
ATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATATGGCATCCCTGTGCTTATAGGGAAC
AGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATG
CCATCCCTATGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGACATCCCTATGCTTATAGGAA
C
Found at i:1350261 original size:13 final size:13
Alignment explanation
Indices: 1350243--1350280 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
1350233 TTATAGGGAA
1350243 CAGATCGAAGAAG
1 CAGATCGAAGAAG
1350256 CAGATCGAAGAAG
1 CAGATCGAAGAAG
1350269 CAGATCGAAGAA
1 CAGATCGAAGAA
1350281 CTCAAAACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.29, T:0.08
Consensus pattern (13 bp):
CAGATCGAAGAAG
Found at i:1350736 original size:22 final size:23
Alignment explanation
Indices: 1350711--1350756 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
1350701 GAGAGGGGGG
*
1350711 ATCGATGGTGTTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
1350733 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
1350756 A
1 A
1350757 GAGATTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.28, C:0.04, G:0.35, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:1351501 original size:38 final size:40
Alignment explanation
Indices: 1351378--1351530 Score: 222
Period size: 40 Copynumber: 3.9 Consensus size: 40
1351368 ATAAAGTATG
*
1351378 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
* * *
1351418 GTTTTAATTAATGATAAAAATAAAATAATATGGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
*
1351458 GTTTTAATTAATAAT-AAAACAAAATAGTAT-GGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
* *
1351496 GTTTTAATTAATAAT-AAAACAAAGTAGCATGGGGG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGG
1351531 GAGTGGAATC
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 35 0.34
39 17 0.17
40 50 0.49
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.31
Consensus pattern (40 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
Found at i:1351532 original size:78 final size:80
Alignment explanation
Indices: 1351378--1351530 Score: 222
Period size: 78 Copynumber: 1.9 Consensus size: 80
1351368 ATAAAGTATG
* * *
1351378 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATGGTTTTAATTAATGATAAAAATAAAA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAAACAAAA
*
1351443 TAATATGGGGGAATA
66 TAACATGGGGGAATA
* *
1351458 GTTTTAATTAATAAT-AAAACAAAATAGTAT-GGGGAGTAGTTTTAATTAATAAT-AAAACAAAG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAAACAAAA
*
1351520 TAGCATGGGGG
66 TAACATGGGGG
1351531 GAGTGGAATC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
77 16 0.24
78 20 0.30
79 15 0.23
80 15 0.23
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.31
Consensus pattern (80 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAAACAAAA
TAACATGGGGGAATA
Found at i:1353282 original size:107 final size:107
Alignment explanation
Indices: 1353140--1353352 Score: 399
Period size: 107 Copynumber: 2.0 Consensus size: 107
1353130 CCAATCACAC
*
1353140 CTAAAAAGATTGGTGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
1 CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
1353205 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTATA
66 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTATA
* *
1353247 CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCTAAAACTTG
1 CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
1353312 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTAT
66 ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTAT
1353353 CTTTTTTATT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (107 bp):
CTAAAAAGATTGGCGACGACTCCCGTTTTCGTTTTTTAAAATCGATTCCCATTTTCCAAAACTCG
ATATGAAAATGGTTTCGACACCTGCTATTCAAATTTTCTATA
Found at i:1355501 original size:21 final size:21
Alignment explanation
Indices: 1355477--1355525 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
1355467 TATTTTAATG
1355477 TTTACATTATAATATTATAT-A
1 TTTACATT-TAATATTATATAA
*
1355498 TTTA-ATTTAATTTTATATAA
1 TTTACATTTAATATTATATAA
*
1355518 ATTACATT
1 TTTACATT
1355526 CTATACATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 7 0.29
21 7 0.29
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTACATTTAATATTATATAA
Found at i:1355513 original size:19 final size:21
Alignment explanation
Indices: 1355463--1355525 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
1355453 AAAATTTAAA
*
1355463 TATATATTTTA-ATGTTTACAT
1 TATA-ATTTTATATATTTACAT
*
1355484 TATAATATTATATATTTA-AT
1 TATAATTTTATATATTTACAT
*
1355504 T-TAATTTTATATAAATTACAT
1 TATAATTTTATAT-ATTTACAT
1355525 T
1 T
1355526 CTATACATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 10 0.29
20 12 0.34
21 13 0.37
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.56
Consensus pattern (21 bp):
TATAATTTTATATATTTACAT
Found at i:1357354 original size:17 final size:18
Alignment explanation
Indices: 1357325--1357361 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
1357315 GATGCTAAGG
1357325 ATGAGTAAAAAACTTTTA
1 ATGAGTAAAAAACTTTTA
1357343 ATGAGT-AAAAACTTTTA
1 ATGAGTAAAAAACTTTTA
1357360 AT
1 AT
1357362 AAAATCCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (18 bp):
ATGAGTAAAAAACTTTTA
Found at i:1358223 original size:16 final size:18
Alignment explanation
Indices: 1358197--1358230 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
1358187 TTAAAATTTT
1358197 ATATGTA-TTTTTATAAA
1 ATATGTATTTTTTATAAA
1358214 ATAT-TATTTTTTATAAA
1 ATATGTATTTTTTATAAA
1358231 GAAATAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
ATATGTATTTTTTATAAA
Found at i:1360031 original size:14 final size:14
Alignment explanation
Indices: 1360012--1360039 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1360002 CTTTTTTCAT
1360012 TTAAAATATAAAAA
1 TTAAAATATAAAAA
1360026 TTAAAATATAAAAA
1 TTAAAATATAAAAA
1360040 AAAAAACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TTAAAATATAAAAA
Found at i:1368285 original size:10 final size:10
Alignment explanation
Indices: 1368256--1368295 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
1368246 TTAAATTCTA
1368256 AAAGATAAATT
1 AAAGATAAA-T
1368267 AAAGATAAAT
1 AAAGATAAAT
*
1368277 AAGGATAAAT
1 AAAGATAAAT
1368287 AAAGATAAA
1 AAAGATAAA
1368296 GGCTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:1369096 original size:15 final size:15
Alignment explanation
Indices: 1369078--1369107 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1369068 AAATTTTAAT
1369078 TTTTTATAATTTATA
1 TTTTTATAATTTATA
1369093 TTTTTATAATTTATA
1 TTTTTATAATTTATA
1369108 AAGGATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:1376151 original size:93 final size:93
Alignment explanation
Indices: 1375983--1376152 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
1375973 GGATGGTTGA
* * **
1375983 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
1376048 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* * * *
1376076 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
1376141 TGAGTCCGAGTT
66 TGAGTCCGAGTT
1376153 CACTTATGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:1376160 original size:46 final size:46
Alignment explanation
Indices: 1375992--1376161 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
1375982 AGCATTCGAA
* * ** *
1375992 CTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTTCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
* *
1376038 CTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC--CCGAG
1376085 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
*
1376131 CTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1376162 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 10, Indels: 22
0.76 0.07 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
45 2 0.02
46 55 0.53
47 23 0.22
48 3 0.03
50 4 0.04
51 7 0.07
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
Found at i:1382515 original size:26 final size:26
Alignment explanation
Indices: 1382479--1382533 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
1382469 ATTCACTGAA
*
1382479 TCATCTCTAAACTATTTTTAACTAAT
1 TCATCTCTAAACCATTTTTAACTAAT
1382505 TCATCTCTAAACCATTTTTAACTAAT
1 TCATCTCTAAACCATTTTTAACTAAT
1382531 TCA
1 TCA
1382534 ATCAACTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.44
Consensus pattern (26 bp):
TCATCTCTAAACCATTTTTAACTAAT
Found at i:1383778 original size:3 final size:3
Alignment explanation
Indices: 1383770--1383824 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
1383760 TTATAGAGTT
*
1383770 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1383818 TTA TTA T
1 TTA TTA T
1383825 CAAAAGGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:1391459 original size:21 final size:21
Alignment explanation
Indices: 1391435--1391483 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
1391425 TCTTTTAATG
1391435 TTTACATTATAATATTATAT-A
1 TTTACATT-TAATATTATATAA
*
1391456 TTTA-ATTTAATTTTATATAA
1 TTTACATTTAATATTATATAA
*
1391476 ATTACATT
1 TTTACATT
1391484 GTATACATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 7 0.29
21 7 0.29
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTACATTTAATATTATATAA
Found at i:1391753 original size:13 final size:13
Alignment explanation
Indices: 1391735--1391778 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
1391725 ATATCTTATA
*
1391735 TTTAAATTTAAAT
1 TTTAAATATAAAT
*
1391748 TTTAAAAATAATAT
1 TTTAAATATAA-AT
*
1391762 TTTATATATAAAT
1 TTTAAATATAAAT
1391775 TTTA
1 TTTA
1391779 TATTTTTGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTAAATATAAAT
Found at i:1393339 original size:10 final size:10
Alignment explanation
Indices: 1393320--1393369 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
1393310 TGAAATTTTA
1393320 AAAGATAAAT
1 AAAGATAAAT
1393330 ACAA-ATAAAT
1 A-AAGATAAAT
1393340 AAAGATAAAT
1 AAAGATAAAT
1393350 AAAGATAAAT
1 AAAGATAAAT
1393360 GAAA-ATAAAT
1 -AAAGATAAAT
1393370 CCTAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:1400194 original size:36 final size:36
Alignment explanation
Indices: 1400147--1400217 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
1400137 TCCCTTATTT
1400147 CTAAGCGCTCAAGAAGACAAGTGCTGCTACTCATAA
1 CTAAGCGCTCAAGAAGACAAGTGCTGCTACTCATAA
1400183 CTAAGCGCTCAAGAAGACAAGTGCTGCTACTCATA
1 CTAAGCGCTCAAGAAGACAAGTGCTGCTACTCATA
1400218 CTCTTATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (36 bp):
CTAAGCGCTCAAGAAGACAAGTGCTGCTACTCATAA
Found at i:1412248 original size:21 final size:21
Alignment explanation
Indices: 1412207--1412249 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
1412197 TTTATATATT
* *
1412207 TATTTATATAAATATATTAAA
1 TATTTAGATAAATATAATAAA
1412228 TATTTAGA-AAATATCAATAAA
1 TATTTAGATAAATAT-AATAAA
1412249 T
1 T
1412250 TCGTACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
TATTTAGATAAATATAATAAA
Found at i:1412699 original size:11 final size:11
Alignment explanation
Indices: 1412681--1412721 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
1412671 ACAATAACAA
1412681 CAAAATAGTAG
1 CAAAATAGTAG
* *
1412692 CAACATAGTAA
1 CAAAATAGTAG
*
1412703 TAAAATAGTAG
1 CAAAATAGTAG
1412714 CAAAATAG
1 CAAAATAG
1412722 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:1412729 original size:22 final size:22
Alignment explanation
Indices: 1412682--1412729 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
1412672 CAATAACAAC
* * *
1412682 AAAATAGTAGCAACATAGTAAT
1 AAAATAGTAGCAAAATAGGAAG
*
1412704 AAAATAGTAGCAAAATAGGGAG
1 AAAATAGTAGCAAAATAGGAAG
1412726 AAAA
1 AAAA
1412730 CAATAAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.58, C:0.06, G:0.19, T:0.17
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAGGAAG
Found at i:1413082 original size:6 final size:6
Alignment explanation
Indices: 1413071--1413104 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
1413061 TGCTTTGCTT
*
1413071 TTTTTC TTTTTC TTTTTC TTTTTT TTTTTGC TTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT-C TTT
1413105 GATGCTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 22 0.88
7 3 0.12
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:1414056 original size:22 final size:22
Alignment explanation
Indices: 1414016--1414057 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
1414006 GCACAAATGA
1414016 ACAGAGAGCACTGAAGTGCTAT
1 ACAGAGAGCACTGAAGTGCTAT
*
1414038 ACAGAGGGCA-TGAATGTGCT
1 ACAGAGAGCACTGAA-GTGCT
1414058 GAACGAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (22 bp):
ACAGAGAGCACTGAAGTGCTAT
Found at i:1415213 original size:5 final size:5
Alignment explanation
Indices: 1415203--1415275 Score: 57
Period size: 5 Copynumber: 14.6 Consensus size: 5
1415193 TATGTATATA
*
1415203 ATAAT ATAAT ATAAT ATTAT AATAAT ATAAT ATAAT A-ACAT ACT--T
1 ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATA-AT A-TAAT
1415248 ATCAAT -TAAGT A-AAT ATAAT ATAAT ATA
1 AT-AAT ATAA-T ATAAT ATAAT ATAAT ATA
1415276 TATGTAACAC
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
3 1 0.02
4 7 0.12
5 43 0.77
6 5 0.09
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:1415223 original size:21 final size:21
Alignment explanation
Indices: 1415199--1415239 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
1415189 TTTATATGTA
1415199 TATAATAATATAATATAATAT
1 TATAATAATATAATATAATAT
1415220 TATAATAATATAATATAATA
1 TATAATAATATAATATAATA
1415240 ACATACTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TATAATAATATAATATAATAT
Found at i:1415227 original size:16 final size:16
Alignment explanation
Indices: 1415203--1415240 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
1415193 TATGTATATA
1415203 ATAAT-ATAATATAAT
1 ATAATAATAATATAAT
*
1415218 ATTATAATAATATAAT
1 ATAATAATAATATAAT
1415234 ATAATAA
1 ATAATAA
1415241 CATACTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAATAATAATATAAT
Found at i:1418064 original size:28 final size:30
Alignment explanation
Indices: 1418024--1418092 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 30
1418014 TGTGCTAATT
*
1418024 TGGTGTGTTTGGGAGGA-CTATG-TGATTC
1 TGGTGTGTTTGGGAGGATATATGATGATTC
*
1418052 TGGTGTGTTTGGGAGGATTATATGATTATTC
1 TGGTGTGTTTGGGAGGA-TATATGATGATTC
1418083 TGGTGTGTTT
1 TGGTGTGTTT
1418093 TGGTTGGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 17 0.47
30 4 0.11
31 15 0.42
ACGTcount: A:0.14, C:0.04, G:0.36, T:0.45
Consensus pattern (30 bp):
TGGTGTGTTTGGGAGGATATATGATGATTC
Found at i:1418427 original size:24 final size:23
Alignment explanation
Indices: 1418396--1418442 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
1418386 ATGACATGAT
*
1418396 TATTCTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTGGGTTGGA
1418419 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGGGTTGGA
1418443 ATCCGTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGGGTTGGA
Found at i:1418536 original size:2 final size:2
Alignment explanation
Indices: 1418529--1418556 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1418519 ATTGTACTGA
1418529 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1418557 GAAAGAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1421817 original size:2 final size:2
Alignment explanation
Indices: 1421806--1421856 Score: 65
Period size: 2 Copynumber: 27.0 Consensus size: 2
1421796 AAAAATCATC
1421806 TA TA -A TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1421845 CTA TA T- TA TA TA
1 -TA TA TA TA TA TA
1421857 CCTGGTGCTG
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
1 4 0.09
2 38 0.86
3 2 0.05
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1422293 original size:18 final size:18
Alignment explanation
Indices: 1422261--1422295 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1422251 ATGTTTTCTT
**
1422261 AAATGGAAATGGAAAATG
1 AAATGGAAAAAGAAAATG
1422279 AAATGGAAAAAGAAAAT
1 AAATGGAAAAAGAAAAT
1422296 ATGTGACCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.14
Consensus pattern (18 bp):
AAATGGAAAAAGAAAATG
Found at i:1423613 original size:25 final size:25
Alignment explanation
Indices: 1423584--1423632 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
1423574 GATGAATAGT
* *
1423584 TTTATATTTAATAT-TTATATATTTC
1 TTTATA-TAAATATATTAAATATTTC
1423609 TTTATATAAATATATTAAATATTT
1 TTTATATAAATATATTAAATATTT
1423633 AGAAAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTATATAAATATATTAAATATTTC
Found at i:1435436 original size:27 final size:25
Alignment explanation
Indices: 1435406--1435455 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
1435396 AGCTCCTGGA
*
1435406 ACAAGAAACAAAAATAAGAAGACATCT
1 ACAAG-AAC-AAAATAACAAGACATCT
*
1435433 ACAAGAGCAAAATAACAAGACAT
1 ACAAGAACAAAATAACAAGACAT
1435456 ACAGAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.67
26 2 0.10
27 5 0.24
ACGTcount: A:0.62, C:0.16, G:0.12, T:0.10
Consensus pattern (25 bp):
ACAAGAACAAAATAACAAGACATCT
Found at i:1439618 original size:2 final size:2
Alignment explanation
Indices: 1439611--1439636 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1439601 AACATTGTAA
1439611 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1439637 TCAGAACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1455694 original size:15 final size:15
Alignment explanation
Indices: 1455674--1455703 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1455664 ATAGTCCTAA
*
1455674 TAATTATCTTAATAT
1 TAATTATCCTAATAT
1455689 TAATTATCCTAATAT
1 TAATTATCCTAATAT
1455704 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:1463117 original size:16 final size:16
Alignment explanation
Indices: 1463073--1463117 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
1463063 CAATTCGACA
*
1463073 AGCTCACACCTTGAAT
1 AGCTCACACTTTGAAT
*
1463089 AGCTCACAATTTGAAT
1 AGCTCACACTTTGAAT
*
1463105 AGCTCGCACTTTG
1 AGCTCACACTTTG
1463118 CTTACTGTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (16 bp):
AGCTCACACTTTGAAT
Found at i:1464715 original size:20 final size:20
Alignment explanation
Indices: 1464690--1464729 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1464680 AATTAATCCT
1464690 TCAATTATTATTTAAAAATA
1 TCAATTATTATTTAAAAATA
1464710 TCAATTATTATTTAAAAATA
1 TCAATTATTATTTAAAAATA
1464730 GAATGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
TCAATTATTATTTAAAAATA
Found at i:1464742 original size:20 final size:20
Alignment explanation
Indices: 1464690--1464738 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1464680 AATTAATCCT
*
1464690 TCAATTATTATTTAAAAATA
1 TCAATGATTATTTAAAAATA
*
1464710 TCAATTATTATTTAAAAATA
1 TCAATGATTATTTAAAAATA
*
1464730 -GAATGATTA
1 TCAATGATTA
1464739 ATTTCTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (20 bp):
TCAATGATTATTTAAAAATA
Found at i:1467371 original size:11 final size:11
Alignment explanation
Indices: 1467357--1467381 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1467347 GATTTTAATA
1467357 TTAAATTATTT
1 TTAAATTATTT
1467368 TTAAATTATTT
1 TTAAATTATTT
1467379 TTA
1 TTA
1467382 TTTTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTAAATTATTT
Found at i:1469896 original size:112 final size:112
Alignment explanation
Indices: 1469699--1469922 Score: 439
Period size: 112 Copynumber: 2.0 Consensus size: 112
1469689 AAGCGCGATG
1469699 TGTTAGTATTTTATAACTAGTTTTTTACAATGTTTGATGTCTTGTTTTCTTTTAGTATTTTGCTT
1 TGTTAGTATTTTATAACTAGTTTTTTACAATGTTTGATGTCTTGTTTTCTTTTAGTATTTTGCTT
*
1469764 TGATGTCTTTGATTTATGCTGATATTTGAGTGTAATCACCGAATATA
66 TGATGCCTTTGATTTATGCTGATATTTGAGTGTAATCACCGAATATA
1469811 TGTTAGTATTTTATAACTAGTTTTTTACAATGTTTGATGTCTTGTTTTCTTTTAGTATTTTGCTT
1 TGTTAGTATTTTATAACTAGTTTTTTACAATGTTTGATGTCTTGTTTTCTTTTAGTATTTTGCTT
1469876 TGATGCCTTTGATTTATGCTGATATTTGAGTGTAATCACCGAATATA
66 TGATGCCTTTGATTTATGCTGATATTTGAGTGTAATCACCGAATATA
1469923 GATAGAAGCG
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 111 1.00
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.52
Consensus pattern (112 bp):
TGTTAGTATTTTATAACTAGTTTTTTACAATGTTTGATGTCTTGTTTTCTTTTAGTATTTTGCTT
TGATGCCTTTGATTTATGCTGATATTTGAGTGTAATCACCGAATATA
Found at i:1471238 original size:2 final size:2
Alignment explanation
Indices: 1471231--1471257 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1471221 ACTGCTAGAG
1471231 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1471258 CATTTTATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1473063 original size:30 final size:30
Alignment explanation
Indices: 1473027--1473086 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
1473017 GATGGACAGT
1473027 AGCGTATATGTAAGTACTCAAGAAGACAAG
1 AGCGTATATGTAAGTACTCAAGAAGACAAG
*
1473057 AGCGTATATGTAAGTGCTCAAGAAGACAAG
1 AGCGTATATGTAAGTACTCAAGAAGACAAG
1473087 TGTTGCTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (30 bp):
AGCGTATATGTAAGTACTCAAGAAGACAAG
Found at i:1487603 original size:46 final size:46
Alignment explanation
Indices: 1487553--1487728 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
1487543 TGGTTGAGCA
1487553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
1487599 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
1487644 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
1487692 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1487729 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:1487709 original size:93 final size:93
Alignment explanation
Indices: 1487550--1487721 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
1487540 GGATGGTTGA
* *
1487550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
1487615 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
1487643 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
1487708 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
1487722 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:1490446 original size:44 final size:42
Alignment explanation
Indices: 1490354--1490462 Score: 164
Period size: 42 Copynumber: 2.5 Consensus size: 42
1490344 CCTGATCAGT
* *
1490354 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTGATACGACACACGAGGTGCCTG
* *
1490396 ATACGACACACAAGGTGCCTGATACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTGATACGACACACGAGGTGCCTG
1490438 AAATACGACACATAAAGTGCCTGAT
1 --ATACGACACATAAAGTGCCTGAT
1490463 CAGTAAAGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 38 0.64
44 21 0.36
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.16
Consensus pattern (42 bp):
ATACGACACATAAAGTGCCTGATACGACACACGAGGTGCCTG
Found at i:1490457 original size:23 final size:22
Alignment explanation
Indices: 1490354--1490461 Score: 123
Period size: 21 Copynumber: 5.0 Consensus size: 22
1490344 CCTGATCAGT
* *
1490354 ATACGACACATAAAGTGCCT-A
1 ATACGACACACAAGGTGCCTGA
* *
1490375 AAACGACACACGAGGTGCCTG-
1 ATACGACACACAAGGTGCCTGA
1490396 ATACGACACACAAGGTGCCTG-
1 ATACGACACACAAGGTGCCTGA
*
1490417 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAGGTGCCTG-A
* *
1490440 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAGGTGCCTGA
1490462 TCAGTAAAGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
21 55 0.74
22 1 0.01
23 18 0.24
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (22 bp):
ATACGACACACAAGGTGCCTGA
Found at i:1493044 original size:10 final size:10
Alignment explanation
Indices: 1493025--1493074 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
1493015 TGGAATTCTA
1493025 AAAGATAAAT
1 AAAGATAAAT
1493035 ACAA-ATAAAT
1 A-AAGATAAAT
*
1493045 AAAGATAATT
1 AAAGATAAAT
1493055 AAAGATAAAT
1 AAAGATAAAT
*
1493065 AAAAATAAAT
1 AAAGATAAAT
1493075 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:1509893 original size:27 final size:28
Alignment explanation
Indices: 1509856--1509995 Score: 150
Period size: 27 Copynumber: 5.2 Consensus size: 28
1509846 AGCATGGCTG
* *
1509856 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
1509882 CCAGATACAGATA-ATCGTGGCAGGGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
1509910 CCAGA-ACAGATATGTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
1509937 CCAGAT-CAGATATTTGTGGCAGAACCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
1509964 CCAGAT-CAGATAT-TCGTGGCATAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
1509991 CCAGA
1 CCAGA
1509996 ACGCTTCCCC
Statistics
Matches: 100, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.06
27 79 0.79
28 15 0.15
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:1511645 original size:26 final size:26
Alignment explanation
Indices: 1511609--1511692 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
1511599 CATGAAATTC
1511609 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
1511635 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
1511661 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
1511687 TTATCA
1 TTATCA
1511693 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:1515660 original size:26 final size:26
Alignment explanation
Indices: 1515630--1515743 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
1515620 AGCATGGCTG
* * *
1515630 CCAGAGCAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
1515656 CCAGATATAGATAATCGTGGCAG-GCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
1515683 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
1515710 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
1515737 CCAGAAC
1 CCAGAAC
1515744 GCTTCCTCCA
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 18 0.24
27 51 0.68
28 6 0.08
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:1515694 original size:53 final size:54
Alignment explanation
Indices: 1515630--1515743 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
1515620 AGCATGGCTG
* * * *
1515630 CCAGAGCAGATA-ATGTGACAGAGTCACCAGATATAGATAATCGTGGCA-GGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCA
* * *
1515683 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
1515737 CCAGAAC
1 CCAGAAC
1515744 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 23 0.44
54 29 0.56
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
Found at i:1517389 original size:26 final size:26
Alignment explanation
Indices: 1517351--1517408 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
1517341 CATGAAATTC
1517351 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* **
1517377 TTATCATGGAACATTTACCTAACTTA
1 TTATCATGAAACATTTACCTAACCCA
1517403 TTATCA
1 TTATCA
1517409 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:1534194 original size:51 final size:51
Alignment explanation
Indices: 1534134--1534235 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
1534124 TTGAAGCATG
1534134 GCATGGATTTAAACCATCTGTCTCTCATTTGAAGGTCTTTGGATGTATGTA
1 GCATGGATTTAAACCATCTGTCTCTCATTTGAAGGTCTTTGGATGTATGTA
*
1534185 GCATGGATTTAAACCATCTGTCTCTCATTTGAAGGTCTTTGGATGTGTGTA
1 GCATGGATTTAAACCATCTGTCTCTCATTTGAAGGTCTTTGGATGTATGTA
1534236 CTATGTCCTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (51 bp):
GCATGGATTTAAACCATCTGTCTCTCATTTGAAGGTCTTTGGATGTATGTA
Found at i:1534396 original size:22 final size:22
Alignment explanation
Indices: 1534369--1534415 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
1534359 TTTAGTAAGT
1534369 AGAGACATCAGATTTGATGAAA
1 AGAGACATCAGATTTGATGAAA
1534391 AGAGACATCAGATTTGATGAAA
1 AGAGACATCAGATTTGATGAAA
1534413 AGA
1 AGA
1534416 AGACTTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.23, T:0.21
Consensus pattern (22 bp):
AGAGACATCAGATTTGATGAAA
Found at i:1538893 original size:11 final size:12
Alignment explanation
Indices: 1538857--1538893 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
1538847 TTGGGTTCAT
*
1538857 TTATTAGTATAA
1 TTATTTGTATAA
1538869 TTATTTGTATAA
1 TTATTTGTATAA
1538881 TTATTTG-ATAA
1 TTATTTGTATAA
1538892 TT
1 TT
1538894 TTACAAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (12 bp):
TTATTTGTATAA
Found at i:1543763 original size:107 final size:108
Alignment explanation
Indices: 1543640--1543855 Score: 416
Period size: 107 Copynumber: 2.0 Consensus size: 108
1543630 TAAACAAAAA
*
1543640 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTCAAATAATAAAATTTCTAACAA
1543705 AATTGTATTAAAATTTTTGTTAATTACTCT-ATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
1543747 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTCAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTCAAATAATAAAATTTCTAACAA
1543812 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
1543855 A
1 A
1543856 CATGTTTTTT
Statistics
Matches: 107, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
107 94 0.88
108 13 0.12
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (108 bp):
ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTCAAATAATAAAATTTCTAACAA
AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
Found at i:1565453 original size:21 final size:21
Alignment explanation
Indices: 1565427--1565477 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
1565417 CGCTGTTTCT
1565427 AATCTCACCGCTACAGTAACC
1 AATCTCACCGCTACAGTAACC
1565448 AATCTCACCGCTACAGTAACC
1 AATCTCACCGCTACAGTAACC
1565469 AATCTCACC
1 AATCTCACC
1565478 ACCACCGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.39, G:0.08, T:0.20
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:1567491 original size:108 final size:108
Alignment explanation
Indices: 1567302--1567506 Score: 356
Period size: 108 Copynumber: 1.9 Consensus size: 108
1567292 TCAAGAGTAG
* * * *
1567302 TCGGATAAAATCTTCGTCCAAAGTGGAGGCATTGAAAGCTTTTCCTAAGCTCTCTTCAAAATTAA
1 TCGGATAAAATCTTCGTCAAAAATGGAGGCATCGAAAGCTTTTCCTAAGCTCTCTCCAAAATTAA
*
1567367 GTGATAAACTCTTGAGGGTGCCTCTCTCTTCAATGGTAACTCT
66 GTGATAAAATCTTGAGGGTGCCTCTCTCTTCAATGGTAACTCT
*
1567410 TCGGATAAAATCTTCGTCAAAAATTGAGGCATCGAAAGCTTTTCCTAAGCTCTCTCCAAAATTAA
1 TCGGATAAAATCTTCGTCAAAAATGGAGGCATCGAAAGCTTTTCCTAAGCTCTCTCCAAAATTAA
1567475 GTGATAAAATCTTGAGGGTGCCTCTCTCTTCA
66 GTGATAAAATCTTGAGGGTGCCTCTCTCTTCA
1567507 GTACAAGAAC
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
108 91 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (108 bp):
TCGGATAAAATCTTCGTCAAAAATGGAGGCATCGAAAGCTTTTCCTAAGCTCTCTCCAAAATTAA
GTGATAAAATCTTGAGGGTGCCTCTCTCTTCAATGGTAACTCT
Found at i:1568213 original size:11 final size:11
Alignment explanation
Indices: 1568178--1568239 Score: 56
Period size: 11 Copynumber: 5.4 Consensus size: 11
1568168 ACGTATTATT
1568178 AAAACATTTAG
1 AAAACATTTAG
*
1568189 AGAA-ATTT-G
1 AAAACATTTAG
1568198 AAAACATTTAG
1 AAAACATTTAG
1568209 AAAACATTAACTTGAG
1 AAAACA-T---TT-AG
1568225 AAAACATTTAG
1 AAAACATTTAG
1568236 AAAA
1 AAAA
1568240 AAAACAATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
9 4 0.10
10 8 0.19
11 16 0.38
12 3 0.07
15 3 0.07
16 8 0.19
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (11 bp):
AAAACATTTAG
Found at i:1584324 original size:3 final size:3
Alignment explanation
Indices: 1584316--1584358 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
1584306 GTATGGAATT
* * *
1584316 ATG ATG ATG ATG ATA ATG ATG ATG GTA ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1584359 CGACAAGTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:1589493 original size:16 final size:16
Alignment explanation
Indices: 1589474--1589515 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
1589464 TATCTAGATT
**
1589474 ATTTAAAATTTTTAAA
1 ATTTAAAATTAATAAA
*
1589490 ATTTTAAATTAATAAA
1 ATTTAAAATTAATAAA
1589506 A-TTAAAATTA
1 ATTTAAAATTA
1589516 TATTTTAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTTAAAATTAATAAA
Found at i:1593208 original size:24 final size:24
Alignment explanation
Indices: 1593176--1593225 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
1593166 TTGAAGCTAC
*
1593176 ATTTCATGGGAGGAAGAGGCCTAA
1 ATTTCATGGGAGAAAGAGGCCTAA
*
1593200 ATTTCATGGGTGAAAGAGGCCTAA
1 ATTTCATGGGAGAAAGAGGCCTAA
1593224 AT
1 AT
1593226 GAGATTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.24
Consensus pattern (24 bp):
ATTTCATGGGAGAAAGAGGCCTAA
Found at i:1605254 original size:3 final size:3
Alignment explanation
Indices: 1605246--1605315 Score: 104
Period size: 3 Copynumber: 23.3 Consensus size: 3
1605236 TTAGTATGGA
* *
1605246 ATG ATG ATG ATG ATG ATG ATA ATG ATG ATG ATG ATG ATG ATA ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* *
1605294 ATG GTA ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG A
1605316 CGACGACAAG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:1605271 original size:21 final size:21
Alignment explanation
Indices: 1605245--1605315 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
1605235 TTTAGTATGG
1605245 AATGATGATGATGATGATGAT
1 AATGATGATGATGATGATGAT
1605266 AATGATGATGATGATGATGAT
1 AATGATGATGATGATGATGAT
* *
1605287 AATGATGATGGTAATGATGAT
1 AATGATGATGATGATGATGAT
*
1605308 GATGATGA
1 AATGATGA
1605316 CGACGACAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.32
Consensus pattern (21 bp):
AATGATGATGATGATGATGAT
Found at i:1614812 original size:118 final size:118
Alignment explanation
Indices: 1614651--1614886 Score: 391
Period size: 118 Copynumber: 2.0 Consensus size: 118
1614641 ATTATTTATT
*
1614651 TCGGTTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
1 TCGGCTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
* *
1614716 AGCACCCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACC
66 AGCACCCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
****
1614769 TCGGCTAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
1 TCGGCTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
**
1614834 AGCACCCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 AGCACCCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
1614887 ATGGAAAACA
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 109 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TCGGCTAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCA
AGCACCCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
Found at i:1615846 original size:6 final size:6
Alignment explanation
Indices: 1615830--1615882 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
1615820 ATATTTAACT
*
1615830 AAAAT- AAAATA AAAATA AAAGA-A AATAATA AATAATA AAAATA AAAAGA
1 AAAATA AAAATA AAAATA AAA-ATA AA-AATA AA-AATA AAAATA AAAATA
1615879 AAAA
1 AAAA
1615883 GAAAGATTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
5 5 0.12
6 26 0.60
7 12 0.28
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:1615854 original size:16 final size:16
Alignment explanation
Indices: 1615829--1615886 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
1615819 AATATTTAAC
*
1615829 TAAAATAAAATAAAAA
1 TAAAAGAAAATAAAAA
1615845 TAAAAGAAAATAATAAA
1 TAAAAGAAAATAA-AAA
*
1615862 TAATA-AAAATAAAAA
1 TAAAAGAAAATAAAAA
*
1615877 GAAAAAGAAA
1 -TAAAAGAAA
1615887 GATTGGGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 3 0.09
16 22 0.63
17 10 0.29
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (16 bp):
TAAAAGAAAATAAAAA
Found at i:1622912 original size:423 final size:423
Alignment explanation
Indices: 1622118--1622963 Score: 1649
Period size: 424 Copynumber: 2.0 Consensus size: 423
1622108 CACTTCACCC
1622118 CCTATTTATAGTGCTAGGGAGATAGTCTAATTGAACTTAAATTCTAAAAAGATAAATACATTTAA
1 CCTATTTATAGTGCTAGGGAGATAGTCTAATTGAACTTAAATTCTAAAAAGATAAATACATTTAA
1622183 TTAAAGATAAACAAAGATAATTAAAATAAAATCCTAAATTTGAATAATCCTAATAATTATCTTAA
66 TTAAAGATAAACAAAGATAATTAAAATAAAATCCTAAATTTGAATAATCCTAATAATTATCTTAA
1622248 TATTAATTATCCTAATAGAATAAAATAAAATAGAGTCTTCCAAAATAAAATCTCTTCTATTTGCT
131 TATTAATTATCCTAATAGAATAAAATAAAATAGAGTCTTCCAAAATAAAATCTCTTCTATTTGCT
1622313 TTTAAGTCCTTGTGCCTTCCATGTTCGCACTTTTGGCACCATATTTGTCCCACGTTGCATATTGG
196 TTTAAGTCCTTGTGCCTTCCATGTTCGCACTTTTGGCACCATATTTGTCCCACGTTGCATATTGG
*
1622378 CCCATTTAATCTCCAAATTGACGCTTTTTCCCTTGAATTTACTTTTCGCCTCCAATTTAGTCCCT
261 CCCATTTAATCTCCAAATTGACGCTTTTTCCCTTAAATTTACTTTTCGCCTCCAATTTAGTCCCT
1622443 AAAAGATAAAAAGACATAAATAGCTCAAATTAGTAGGCTCAAGCTCAAAATAAACACATGATTAA
326 AAAAGATAAAAAGACATAAATAGCTCAAATTAGTAGGCTCAAGCTCAAAATAAACACATGATTAA
1622508 TATATAAAAACACGTCATTTTAGAGTATTATCA
391 TATATAAAAACACGTCATTTTAGAGTATTATCA
1622541 CCTATTTATAGTGCTAGGGAGATAGTCTAATTGAACTTAAATTCTAAAAAAGATAAATACATTTA
1 CCTATTTATAGTGCTAGGGAGATAGTCTAATTGAACTTAAATTCT-AAAAAGATAAATACATTTA
*
1622606 ATTAAATATAAACAAAGATAATTAAAATAAAATCCTAAATTTGAATAATCCTAATAATTATCTTA
65 ATTAAAGATAAACAAAGATAATTAAAATAAAATCCTAAATTTGAATAATCCTAATAATTATCTTA
1622671 ATATTAATTATCCTAATAGAATAAAATAAAATAGAGTCTTCCAAAATAAAATCTCTTCTATTTGC
130 ATATTAATTATCCTAATAGAATAAAATAAAATAGAGTCTTCCAAAATAAAATCTCTTCTATTTGC
1622736 TTTTAAGTCCTTGTGCCTTCCATGTTCGCACTTTTGGCACCATATTTGTCCCACGTTGCATATTG
195 TTTTAAGTCCTTGTGCCTTCCATGTTCGCACTTTTGGCACCATATTTGTCCCACGTTGCATATTG
*
1622801 GCCCATTTAAT-TCCGAATTGACGCTTTTTCCCTTAAATTTACTTTTCGCCTCCAATTTAGTCCC
260 GCCCATTTAATCTCCAAATTGACGCTTTTTCCCTTAAATTTACTTTTCGCCTCCAATTTAGTCCC
1622865 TAAAAGATAAAAAGACATAAATAGCTCAAATTAGTAGGCTCAAGCTCAAAATAAACACATGATTA
325 TAAAAGATAAAAAGACATAAATAGCTCAAATTAGTAGGCTCAAGCTCAAAATAAACACATGATTA
1622930 ATATATAAAAACACGTCATTTTAGAGTATTATCA
390 ATATATAAAAACACGTCATTTTAGAGTATTATCA
1622964 AATTCCCCCT
Statistics
Matches: 419, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
423 195 0.47
424 224 0.53
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (423 bp):
CCTATTTATAGTGCTAGGGAGATAGTCTAATTGAACTTAAATTCTAAAAAGATAAATACATTTAA
TTAAAGATAAACAAAGATAATTAAAATAAAATCCTAAATTTGAATAATCCTAATAATTATCTTAA
TATTAATTATCCTAATAGAATAAAATAAAATAGAGTCTTCCAAAATAAAATCTCTTCTATTTGCT
TTTAAGTCCTTGTGCCTTCCATGTTCGCACTTTTGGCACCATATTTGTCCCACGTTGCATATTGG
CCCATTTAATCTCCAAATTGACGCTTTTTCCCTTAAATTTACTTTTCGCCTCCAATTTAGTCCCT
AAAAGATAAAAAGACATAAATAGCTCAAATTAGTAGGCTCAAGCTCAAAATAAACACATGATTAA
TATATAAAAACACGTCATTTTAGAGTATTATCA
Found at i:1624933 original size:27 final size:26
Alignment explanation
Indices: 1624903--1624959 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
1624893 AGATAATTAA
1624903 AATAA-AATCCTAAATTTGAATAATCCT
1 AATAATAAT-CTAAATTT-AATAATCCT
* * *
1624930 AATAATTATCTTAATTTAATTATCCT
1 AATAATAATCTAAATTTAATAATCCT
1624956 AATA
1 AATA
1624960 GAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 12 0.46
27 12 0.46
28 2 0.08
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (26 bp):
AATAATAATCTAAATTTAATAATCCT
Found at i:1624951 original size:14 final size:14
Alignment explanation
Indices: 1624909--1624958 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
1624899 TTAAAATAAA
*
1624909 ATCCTAAATTTGAATA
1 ATCCT-AATTT-AATT
1624925 ATCCTAA--TAATT
1 ATCCTAATTTAATT
*
1624937 ATCTTAATTTAATT
1 ATCCTAATTTAATT
1624951 ATCCTAAT
1 ATCCTAAT
1624959 AGAATAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
12 9 0.31
13 1 0.03
14 12 0.41
15 2 0.07
16 5 0.17
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.44
Consensus pattern (14 bp):
ATCCTAATTTAATT
Found at i:1625807 original size:29 final size:30
Alignment explanation
Indices: 1625774--1625834 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
1625764 ATTTCTCAAG
*
1625774 AATATTAAATGAATG-AAATTTGAAAAAGA
1 AATATTAAATAAATGAAAATTTGAAAAAGA
*
1625803 AATATTAAATAAATGAAAATTTTAAAAAGA
1 AATATTAAATAAATGAAAATTTGAAAAAGA
1625833 AA
1 AA
1625835 ATAGAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (30 bp):
AATATTAAATAAATGAAAATTTGAAAAAGA
Found at i:1629464 original size:22 final size:21
Alignment explanation
Indices: 1629433--1629473 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
1629423 TAAAAAGAAA
1629433 ATTTTGATTTAATCGATTTTC
1 ATTTTGATTTAATCGATTTTC
*
1629454 ATTTTCGATTTAATTGATTT
1 ATTTT-GATTTAATCGATTT
1629474 ATTGGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59
Consensus pattern (21 bp):
ATTTTGATTTAATCGATTTTC
Found at i:1634995 original size:37 final size:37
Alignment explanation
Indices: 1634952--1635025 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
1634942 GGTGGTGGAC
1634952 GGGTGGAGGGGTGATGCCAAGTTTCCAAGTTGGCTTT
1 GGGTGGAGGGGTGATGCCAAGTTTCCAAGTTGGCTTT
1634989 GGGTGGAGGGGTGATGCCAAGTTTCCAAGTTGGCTTT
1 GGGTGGAGGGGTGATGCCAAGTTTCCAAGTTGGCTTT
1635026 CTGTGCTCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.16, C:0.14, G:0.41, T:0.30
Consensus pattern (37 bp):
GGGTGGAGGGGTGATGCCAAGTTTCCAAGTTGGCTTT
Found at i:1640116 original size:27 final size:27
Alignment explanation
Indices: 1640085--1640138 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
1640075 GTTTGCGAAC
*
1640085 CTTAATTTTTGTATTTTCTTTTTAAGG
1 CTTAATTTTTGTATTTTCCTTTTAAGG
1640112 CTTAATTTTTGTATTTTCCTTTTAAGG
1 CTTAATTTTTGTATTTTCCTTTTAAGG
1640139 AAAGGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.09, G:0.11, T:0.61
Consensus pattern (27 bp):
CTTAATTTTTGTATTTTCCTTTTAAGG
Found at i:1640649 original size:25 final size:24
Alignment explanation
Indices: 1640619--1640675 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
1640609 AGCCATTATT
*
1640619 TTAATTTATGAATTAAATTTTAATA
1 TTAATTTATAAATT-AATTTTAATA
* * *
1640644 TTAATTCATAAATTATTTTTAATT
1 TTAATTTATAAATTAATTTTAATA
1640668 TTATATTT
1 TTA-ATTT
1640676 TAATTAGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (24 bp):
TTAATTTATAAATTAATTTTAATA
Found at i:1659976 original size:18 final size:19
Alignment explanation
Indices: 1659941--1659979 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
1659931 GGAAGTTAGA
1659941 TGTTGGAACACAGGAGGGAGT
1 TGTTGGAACAC--GAGGGAGT
1659962 TGTTGGAACAC-AGGGAGT
1 TGTTGGAACACGAGGGAGT
1659980 GACCTCAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
21 11 0.61
ACGTcount: A:0.28, C:0.10, G:0.41, T:0.21
Consensus pattern (19 bp):
TGTTGGAACACGAGGGAGT
Found at i:1676380 original size:53 final size:53
Alignment explanation
Indices: 1676315--1676422 Score: 171
Period size: 53 Copynumber: 2.0 Consensus size: 53
1676305 ATTACATCAG
* * *
1676315 CTAATCTTATTATTATTATTGTCATCTTCGTCGTTGTCATTATTATTTTCAAT
1 CTAATCTTATTATTATTATCGTCATCGTCGTCGTTGTCATTATTAGTTTCAAT
* *
1676368 CTAATCTTATTATTATTATCGTCATCGTCGTCGTTGTTATTATTGGTTTCAAT
1 CTAATCTTATTATTATTATCGTCATCGTCGTCGTTGTCATTATTAGTTTCAAT
1676421 CT
1 CT
1676423 CATTAGAGCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.53
Consensus pattern (53 bp):
CTAATCTTATTATTATTATCGTCATCGTCGTCGTTGTCATTATTAGTTTCAAT
Found at i:1679448 original size:13 final size:13
Alignment explanation
Indices: 1679430--1679454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1679420 TGGTCATCCC
1679430 ATATTATTTTTTT
1 ATATTATTTTTTT
1679443 ATATTATTTTTT
1 ATATTATTTTTT
1679455 ACATAATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATATTATTTTTTT
Found at i:1684161 original size:24 final size:24
Alignment explanation
Indices: 1684133--1684192 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 24
1684123 ATAGCAAAGG
1684133 TGATTTCAAATTTTTTTTCTCT-GT
1 TGATTTCAAATTTTTTTT-TCTGGT
*
1684157 TGATTT---ATTTTTTTTTTTGGT
1 TGATTTCAAATTTTTTTTTCTGGT
1684178 TGA-TTCAAATTTTTT
1 TGATTTCAAATTTTTT
1684193 ATGTAAATCG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
20 4 0.13
21 14 0.45
23 7 0.23
24 6 0.19
ACGTcount: A:0.17, C:0.07, G:0.10, T:0.67
Consensus pattern (24 bp):
TGATTTCAAATTTTTTTTTCTGGT
Found at i:1687274 original size:35 final size:35
Alignment explanation
Indices: 1687228--1687299 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
1687218 CAACCTCACC
1687228 TTTGTACAATTAAGTAAACACTCTTTCAACTTACT
1 TTTGTACAATTAAGTAAACACTCTTTCAACTTACT
1687263 TTTGTACAATTAAGTAAACACTCTTTCAACTTACT
1 TTTGTACAATTAAGTAAACACTCTTTCAACTTACT
1687298 TT
1 TT
1687300 AGTTATGCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (35 bp):
TTTGTACAATTAAGTAAACACTCTTTCAACTTACT
Found at i:1689993 original size:144 final size:144
Alignment explanation
Indices: 1689758--1690040 Score: 433
Period size: 144 Copynumber: 2.0 Consensus size: 144
1689748 CTAATGTTTC
* * ** *
1689758 CAATTGAACAAGATGTTGAAGCCCAATGGGGAGAGACACCAGCTTTGGAATATTCTTAATCTCCA
1 CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACACCAGCTGCGGAATATTATTAATCTCCA
* ** *
1689823 AACGAGAGAGATTCTTAAGGGCTTCCCATTGCATGCCTTCTAAATCAACCTCCTTGCAATCTCCT
66 AACGAGAGAGATTCGTAAGGGCTTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCCT
1689888 ACTGTTAATCCTTT
131 ACTGTTAATCCTTT
* *
1689902 CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACAGCAGCTGCGGATTATTATTAATCTCCA
1 CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACACCAGCTGCGGAATATTATTAATCTCCA
*
1689967 AATGAGAGAGATTCGTAAGGAG-TTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCC
66 AACGAGAGAGATTCGTAAGG-GCTTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCC
*
1690031 TATTGTTAAT
130 TACTGTTAAT
1690041 TTTTTGAGGC
Statistics
Matches: 125, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
144 124 0.99
145 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (144 bp):
CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACACCAGCTGCGGAATATTATTAATCTCCA
AACGAGAGAGATTCGTAAGGGCTTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCCT
ACTGTTAATCCTTT
Found at i:1700504 original size:21 final size:21
Alignment explanation
Indices: 1700478--1700518 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1700468 ATCTGCTCAA
* *
1700478 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
1700499 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
1700519 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:1703341 original size:16 final size:16
Alignment explanation
Indices: 1703316--1703346 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1703306 CACCACTTGG
*
1703316 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
1703332 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
1703347 TCATTAATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:1704185 original size:40 final size:40
Alignment explanation
Indices: 1704130--1704209 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
1704120 GAACTCCACC
*
1704130 ACACCTTTTCAAAAGCTGCTTTCCTATTTCTATACTAAGG
1 ACACCTTTTCAAAAGCTGCTTTCCTATTTCTATACCAAGG
1704170 ACACCTTTTCAAAAGCTGCTTTCCTATTTCTATACCAAGG
1 ACACCTTTTCAAAAGCTGCTTTCCTATTTCTATACCAAGG
1704210 CTGAATTCGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (40 bp):
ACACCTTTTCAAAAGCTGCTTTCCTATTTCTATACCAAGG
Found at i:1710668 original size:18 final size:19
Alignment explanation
Indices: 1710645--1710684 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 19
1710635 ACCCACAGAA
1710645 TTTTTTTT--TATTTT-TT
1 TTTTTTTTCGTATTTTATT
1710661 TTTTTTTTCGTATTTTATT
1 TTTTTTTTCGTATTTTATT
1710680 TTTTT
1 TTTTT
1710685 ACTTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
18 6 0.29
19 7 0.33
ACGTcount: A:0.07, C:0.03, G:0.03, T:0.88
Consensus pattern (19 bp):
TTTTTTTTCGTATTTTATT
Found at i:1717968 original size:12 final size:12
Alignment explanation
Indices: 1717953--1717977 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1717943 CAAATTCAGC
1717953 TAAATCATGCAT
1 TAAATCATGCAT
1717965 TAAATCATGCAT
1 TAAATCATGCAT
1717977 T
1 T
1717978 TTACACGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAATCATGCAT
Found at i:1724345 original size:21 final size:21
Alignment explanation
Indices: 1724319--1724361 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1724309 AGTAAACATT
*
1724319 ATAGTACTAACATGAATAATA
1 ATAGTAATAACATGAATAATA
* *
1724340 ATAGTAATAATATTAATAATA
1 ATAGTAATAACATGAATAATA
1724361 A
1 A
1724362 CGATATAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
ATAGTAATAACATGAATAATA
Found at i:1727865 original size:10 final size:10
Alignment explanation
Indices: 1727852--1727876 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1727842 TCAAAAATTC
1727852 AAAAAGTTTA
1 AAAAAGTTTA
1727862 AAAAAGTTTA
1 AAAAAGTTTA
1727872 AAAAA
1 AAAAA
1727877 TATAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAAAGTTTA
Found at i:1729031 original size:32 final size:31
Alignment explanation
Indices: 1728973--1729032 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
1728963 CTCACAAACA
**
1728973 TTTTATTTTCTACTTAGTACCAAAAAAAATC
1 TTTTATTTTCTACTTAAAACCAAAAAAAATC
* *
1729004 TTTTATTTTTCTTCTTAAAACCTAAAAAA
1 TTTTA-TTTTCTACTTAAAACCAAAAAAA
1729033 TCCTAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 5 0.21
32 19 0.79
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (31 bp):
TTTTATTTTCTACTTAAAACCAAAAAAAATC
Found at i:1730800 original size:10 final size:10
Alignment explanation
Indices: 1730787--1730812 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1730777 GAATTTAAAA
1730787 ATATAAATAT
1 ATATAAATAT
1730797 ATATAAATAT
1 ATATAAATAT
1730807 ATATAA
1 ATATAA
1730813 TTGTGTTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATATAAATAT
Found at i:1741096 original size:21 final size:21
Alignment explanation
Indices: 1741070--1741110 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1741060 ACCTACTCAA
*
1741070 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
1741091 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
1741111 TCGCTTGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:1754167 original size:14 final size:14
Alignment explanation
Indices: 1754150--1754180 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
1754140 TTATGTATAA
1754150 ATTAAAACATAAAT
1 ATTAAAACATAAAT
1754164 ATTAAAACATAAAT
1 ATTAAAACATAAAT
1754178 ATT
1 ATT
1754181 GATATATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (14 bp):
ATTAAAACATAAAT
Found at i:1755203 original size:30 final size:32
Alignment explanation
Indices: 1755146--1755205 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
1755136 TATTAGGATT
*
1755146 TTTTTTAGGGTTTTAAGTAGAAAAATAAAAGA
1 TTTTTTAGGGTATTAAGTAGAAAAATAAAAGA
1755178 TTTTTT-GGGTATTAAGTAG-AAAATAAAA
1 TTTTTTAGGGTATTAAGTAGAAAAATAAAA
1755206 TGTCTTTGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 9 0.33
31 12 0.44
32 6 0.22
ACGTcount: A:0.43, C:0.00, G:0.18, T:0.38
Consensus pattern (32 bp):
TTTTTTAGGGTATTAAGTAGAAAAATAAAAGA
Found at i:1767693 original size:12 final size:12
Alignment explanation
Indices: 1767676--1767700 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1767666 TTTTTTTATT
1767676 ATTTTGCTTTGA
1 ATTTTGCTTTGA
1767688 ATTTTGCTTTGA
1 ATTTTGCTTTGA
1767700 A
1 A
1767701 AAAGATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
ATTTTGCTTTGA
Found at i:1775103 original size:51 final size:51
Alignment explanation
Indices: 1775021--1775122 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
1775011 GTAGGAAAAA
* * * *
1775021 GATATCCGAGGGAAGGATTAAGATGTGAAATGCATGATTTAATGCATGATC
1 GATATCCGAGGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC
1775072 GATATCC-AGGGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC
1 GATATCCGA-GGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC
1775123 TAGCTGAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 45 0.98
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25
Consensus pattern (51 bp):
GATATCCGAGGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC
Found at i:1775117 original size:12 final size:12
Alignment explanation
Indices: 1775100--1775124 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1775090 TAACATGTAA
1775100 AATGCATGATCT
1 AATGCATGATCT
1775112 AATGCATGATCT
1 AATGCATGATCT
1775124 A
1 A
1775125 GCTGAATCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
AATGCATGATCT
Found at i:1777446 original size:2 final size:2
Alignment explanation
Indices: 1777435--1777470 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
1777425 TAAATTATGT
1777435 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1777471 GTGTGTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1777733 original size:31 final size:31
Alignment explanation
Indices: 1777698--1777758 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
1777688 ATTTCTGTAA
*
1777698 ATGTATACGA-TTGAATTAAAATTAAAATTTC
1 ATGTATA-GATTTGAAATAAAATTAAAATTTC
*
1777729 ATGTATAGATTTGAAATACAATTAAAATTT
1 ATGTATAGATTTGAAATAAAATTAAAATTT
1777759 TATTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (31 bp):
ATGTATAGATTTGAAATAAAATTAAAATTTC
Done.