Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 61 of 427
Found at i:14936336 original size:27 final size:22
Alignment explanation
Indices: 14936267--14936327 Score: 115
Period size: 22 Copynumber: 2.8 Consensus size: 22
14936257 TTGTATATAT
14936267 CATATATTATCTACAC-TTTAA
1 CATATATTATCTACACTTTTAA
14936288 CATATATTATCTACACTTTTAA
1 CATATATTATCTACACTTTTAA
14936310 CATATATTATCTACACTT
1 CATATATTATCTACACTT
14936328 ACATGTTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
21 16 0.41
22 23 0.59
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (22 bp):
CATATATTATCTACACTTTTAA
Found at i:14936896 original size:21 final size:23
Alignment explanation
Indices: 14936867--14936922 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 23
14936857 ATATCCTTAA
*
14936867 TTTA-AAAAATATA-TTATATTAT
1 TTTAGAAAAATATACTT-TATCAT
14936889 TTT-G-AAAAT-TACTTTATCAT
1 TTTAGAAAAATATACTTTATCAT
14936909 TTTAGAAAAATATA
1 TTTAGAAAAATATA
14936923 ACACATTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
20 10 0.36
21 8 0.29
22 8 0.29
23 2 0.07
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (23 bp):
TTTAGAAAAATATACTTTATCAT
Found at i:14938627 original size:26 final size:26
Alignment explanation
Indices: 14938598--14938649 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14938588 TAACTAGTTT
14938598 TTTAGTGACGTGGAAATAACAGCCTA
1 TTTAGTGACGTGGAAATAACAGCCTA
14938624 TTTAGTGACGTGGAAATAACAGCCTA
1 TTTAGTGACGTGGAAATAACAGCCTA
14938650 CAATTATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (26 bp):
TTTAGTGACGTGGAAATAACAGCCTA
Found at i:14939126 original size:30 final size:30
Alignment explanation
Indices: 14939090--14939149 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
14939080 ATTGAAAATG
14939090 ATCAATTAAAGCACGGTAGAACCAGCTTAC
1 ATCAATTAAAGCACGGTAGAACCAGCTTAC
14939120 ATCAATTAAAGCACGGTAGAACCAGCTTAC
1 ATCAATTAAAGCACGGTAGAACCAGCTTAC
14939150 CTAGCCTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (30 bp):
ATCAATTAAAGCACGGTAGAACCAGCTTAC
Found at i:14941189 original size:42 final size:43
Alignment explanation
Indices: 14941073--14941192 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 43
14941063 CATAGGATTC
* * * * *
14941073 CGATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATTTGTGATTTCATGTAAGACCACGTCTGGGACATCGACAT
* * *
14941116 CGATTTGTGATTT-ATGTGTAAGATCATGTCTGGGACATCGATAT
1 CGATTTGTGATTTCA--TGTAAGACCACGTCTGGGACATCGACAT
14941160 CG-TATT-TGATTTCATGTAAGACCACGTCTGGGA
1 CGAT-TTGTGATTTCATGTAAGACCACGTCTGGGA
14941193 TGTTGGCATT
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
42 18 0.29
43 18 0.29
44 27 0.43
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (43 bp):
CGATTTGTGATTTCATGTAAGACCACGTCTGGGACATCGACAT
Found at i:14942189 original size:2 final size:2
Alignment explanation
Indices: 14942182--14942234 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
14942172 CAAATTGTTT
14942182 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14942224 TA TA TA TA TA T
1 TA TA TA TA TA T
14942235 GTTATTGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14943509 original size:23 final size:24
Alignment explanation
Indices: 14943460--14943510 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
14943450 AGAAATAACG
* *
14943460 AACAAGAGGAAAAAAACGATAGCA
1 AACAAAAGAAAAAAAACGATAGCA
14943484 AACAAAAGAAAAAACAACGA-AG-A
1 AACAAAAGAAAAAA-AACGATAGCA
14943507 AACA
1 AACA
14943511 GACAAAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.21
24 14 0.58
25 5 0.21
ACGTcount: A:0.69, C:0.14, G:0.16, T:0.02
Consensus pattern (24 bp):
AACAAAAGAAAAAAAACGATAGCA
Found at i:14944737 original size:18 final size:18
Alignment explanation
Indices: 14944699--14944744 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
14944689 TTTCTTTTAC
14944699 ATTATTATTTTTTAAACT
1 ATTATTATTTTTTAAACT
*
14944717 ATTATATATTTTTTATA-T
1 ATTAT-TATTTTTTAAACT
14944735 ATTATGTATT
1 ATTAT-TATT
14944745 CTAAATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTATTATTTTTTAAACT
Found at i:14944750 original size:61 final size:61
Alignment explanation
Indices: 14944666--14944785 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
14944656 GTTCAAATTA
* *
14944666 TTTTATATGTTATTTACTTTAAATTTCTTTTACATTATTATTT-TTTAAACTATTATATATT
1 TTTTATATATTATGTACTTTAAATTTCTTTTACA-TATTATTTATTTAAACTATTATATATT
** *
14944727 TTTTATATATTATGTA-TTCTAAATTTCTTTTTTATATTATTTAGTTTAAACTTTTATAT
1 TTTTATATATTATGTACTT-TAAATTTCTTTTACATATTATTTA-TTTAAACTATTATAT
14944786 GTCATTTTAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
60 10 0.20
61 27 0.53
62 14 0.27
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (61 bp):
TTTTATATATTATGTACTTTAAATTTCTTTTACATATTATTTATTTAAACTATTATATATT
Found at i:14956927 original size:44 final size:44
Alignment explanation
Indices: 14956863--14956987 Score: 160
Period size: 44 Copynumber: 2.8 Consensus size: 44
14956853 AATCACCATG
* * * *
14956863 ACGAATTTTGTCTCCCTGAAGTTTTAGTGGAGTAGATTGAAGTG
1 ACGAATCTTGTCTCTCTGAAGTTATAGTGGAGTAGATTGAAGTC
* * * *
14956907 GCGAATCTTGTCTATCTGAAGTTGTAGTGGAGCAGATTGAAGTC
1 ACGAATCTTGTCTCTCTGAAGTTATAGTGGAGTAGATTGAAGTC
* *
14956951 ACGAATCTTATCTCTCTGAAGTTATAGTAGAGTAGAT
1 ACGAATCTTGTCTCTCTGAAGTTATAGTGGAGTAGAT
14956988 CAAAGCTACA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 68 1.00
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (44 bp):
ACGAATCTTGTCTCTCTGAAGTTATAGTGGAGTAGATTGAAGTC
Found at i:14957135 original size:93 final size:93
Alignment explanation
Indices: 14957019--14957320 Score: 289
Period size: 93 Copynumber: 3.3 Consensus size: 93
14957009 CTTATCTCTC
* * *
14957019 TGAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCCTATACCTCTGAAGTTACAGTAGGTTGGAT
1 TGAAGTTACAGTAGAGCAGATTAAAGCTATAAATCCTATACCTCTGAAGTTGCAGTAGGTTGGAT
14957084 CAAGTTACCATGGCGAATCTCATCTCCT
66 CAAGTTACCATGGCGAATCTCATCTCCT
* * * * * * *
14957112 TGAAGTTACAGTGGAGCAGATTAAAG-TCACAGAGTCTTAT-CTCCCTAAAGTTGCAGT-GG-AG
1 TGAAGTTACAGTAGAGCAGATTAAAGCT-ATA-AATCCTATAC-CTCTGAAGTTGCAGTAGGTTG
* * * *
14957173 CAGACTCAA--T---ATAGCAAATCTTATCTCTT
63 --GA-TCAAGTTACCATGGCGAATCTCATCTCCT
* * * *
14957202 TGAAGTTGCAGTAGAGTAGATTAAATCTATAAATCCTATACCTCTGAAGTTGCAGTAGGTTGAAT
1 TGAAGTTACAGTAGAGCAGATTAAAGCTATAAATCCTATACCTCTGAAGTTGCAGTAGGTTGGAT
*
14957267 CAAGTTACCATGGCGAATCTCATCTCCC
66 CAAGTTACCATGGCGAATCTCATCTCCT
* **
14957295 TGAAGTTACAGTGGATTAGATTAAAG
1 TGAAGTTACAGTAGAGCAGATTAAAG
14957321 TCACAAACCT
Statistics
Matches: 160, Mismatches: 34, Indels: 30
0.71 0.15 0.13
Matches are distributed among these distances:
88 4 0.03
89 20 0.12
90 43 0.27
91 2 0.01
92 2 0.01
93 65 0.41
94 20 0.12
95 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (93 bp):
TGAAGTTACAGTAGAGCAGATTAAAGCTATAAATCCTATACCTCTGAAGTTGCAGTAGGTTGGAT
CAAGTTACCATGGCGAATCTCATCTCCT
Found at i:14957238 original size:183 final size:182
Alignment explanation
Indices: 14957008--14957400 Score: 565
Period size: 183 Copynumber: 2.2 Consensus size: 182
14956998 GATTACAGAG
14957008 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCCTATACCTCTGAAGTTACA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCCTATACCTCTGAAGTTACA
* *
14957073 GTAGGTTGGATCAAGTTACCATGGCGAATCTCATCTCCTTGAAGTTACAGTGGAGCAGATTAAAG
66 GTAGGTTGAATCAAGTTACCATGGCGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAG
** * *
14957138 TCACAGAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTCAATATAGCAAA
131 TCACA-AACCTCATCTCCCTAAAGATGCAGTGGAGCAGACTCAATATAGCAAA
* * * * *
14957191 TCTTATCTCTTTGAAGTTGCAGTAGAGTAGATTAAATCTATAAATCCTATACCTCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCCTATACCTCTGAAGTTACA
**
14957256 GTAGGTTGAATCAAGTTACCATGGCGAATCTCATCTCCCTGAAGTTACAGTGGATTAGATTAAAG
66 GTAGGTTGAATCAAGTTACCATGGCGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAG
* ** * *
14957321 TCACAAACCTCATCTCCCTGAAGATGCAGTGGAGCAGGTTGAA-ATTA-CAAG
131 TCACAAACCTCATCTCCCTAAAGATGCAGTGGAGCAGACTCAATA-TAGCAAA
* * *
14957372 TCTTATTTCCCTGAAGTTGCAGTGGAGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCA
14957401 GACTGAAGTT
Statistics
Matches: 186, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
181 28 0.15
182 32 0.17
183 126 0.68
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (182 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCCTATACCTCTGAAGTTACA
GTAGGTTGAATCAAGTTACCATGGCGAATCTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAG
TCACAAACCTCATCTCCCTAAAGATGCAGTGGAGCAGACTCAATATAGCAAA
Found at i:14957431 original size:45 final size:44
Alignment explanation
Indices: 14957335--14957442 Score: 146
Period size: 44 Copynumber: 2.4 Consensus size: 44
14957325 AAACCTCATC
* **
14957335 TCCCTGAAGATGCAGTGGAGCAGGTTGAAATTACAAGTCTTATT
1 TCCCTGAAGTTGCAGTGGAGCAGACTGAAATTACAAGTCTTATT
* *
14957379 TCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTGAA-TCTTATT
1 TCCCTGAAGTTGCAGTGGAGCAGACTGAAATTA--CAAGTCTTATT
14957424 TCCCTGAAGTTGCAGTGGA
1 TCCCTGAAGTTGCAGTGGA
14957443 ACGAATTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
44 29 0.51
45 26 0.46
46 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (44 bp):
TCCCTGAAGTTGCAGTGGAGCAGACTGAAATTACAAGTCTTATT
Found at i:14957434 original size:226 final size:232
Alignment explanation
Indices: 14957102--14957535 Score: 537
Period size: 226 Copynumber: 1.9 Consensus size: 232
14957092 CATGGCGAAT
* *
14957102 CTCATCTCCTTGAAGTTACAGTGGAGCAGATTAAAGTCACAGAGTCTTATCTCCCTAAAGTTGCA
1 CTCATCTCCCTGAAGATACAGTGGAGCAGATTAAAGTCACAGAGTCTTATCTCCCTAAAGTTGCA
** * *
14957167 GTGGAGCAGACTCAATATAGCAAATCTTATCTCTTTGAAGTTGCAGTAG-A-GTAGATTAAATCT
66 GTGGAGCAGACTCAATATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACG-A-ATTAAAGCT
*
14957230 AT-A-A-A-TCCTATACCTCTGAAGTTGCAGTAGGTTGAATC-AAGTTACCATGGCGAATCTCAT
129 ATGATACAGTCCTATACCTCTGAAGTTGCAGTAGGTCGAATCAAAGTTACCATGGCGAATCTCAT
14957290 CTCCCTGAAGTTACAGTGGATTAGATTAAAGTCACAAAC
194 CTCCCTGAAGTTACAGTGGATTAGATTAAAGTCACAAAC
* * * * *
14957329 CTCATCTCCCTGAAGATGCAGTGGAGCAGGTTGAAA-TTACA-AGTCTTATTTCCCTGAAGTTGC
1 CTCATCTCCCTGAAGATACAGTGGAGCAGATT-AAAGTCACAGAGTCTTATCTCCCTAAAGTTGC
* ** *
14957392 AGTGGAGCAGACTGAAGT-TAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACGAATTAAAGCT
65 AGTGGAGCAGACTCAA-TATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACGAATTAAAGCT
* * * *
14957456 ATGAGTTACAGGTCCTATACCTCTGAAGTTGCAGTAGGTCGGATCAAATTTATCATGGTGAATCT
129 ATGA--TACA-GTCCTATACCTCTGAAGTTGCAGTAGGTCGAATCAAAGTTACCATGGCGAATCT
* *
14957521 TATCTCCTTGAAGTT
191 CATCTCCCTGAAGTT
14957536 TTAGTGGACT
Statistics
Matches: 173, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
226 71 0.41
227 36 0.21
228 4 0.02
230 1 0.01
231 1 0.01
233 31 0.18
234 29 0.17
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (232 bp):
CTCATCTCCCTGAAGATACAGTGGAGCAGATTAAAGTCACAGAGTCTTATCTCCCTAAAGTTGCA
GTGGAGCAGACTCAATATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACGAATTAAAGCTAT
GATACAGTCCTATACCTCTGAAGTTGCAGTAGGTCGAATCAAAGTTACCATGGCGAATCTCATCT
CCCTGAAGTTACAGTGGATTAGATTAAAGTCACAAAC
Found at i:14959322 original size:60 final size:58
Alignment explanation
Indices: 14959210--14959333 Score: 144
Period size: 59 Copynumber: 2.1 Consensus size: 58
14959200 TTATTTACTT
* *
14959210 TAAATTTCTTTTACATTATTATTTTTTAAACTGTTATATATTTTTTATATTATGTATTC
1 TAAATTTCTTTTACATTATTATTTTTTAAACTGTTATATATATTTTAGATTAT-TATTC
* * * *
14959269 TAAATTTCTTTT-TA-TATTATTTAGTTTAAACTTTTATATGTCATTTTAGATTATTTTTC
1 TAAATTTCTTTTACATTATTATTT--TTTAAACTGTTATATAT-ATTTTAGATTATTATTC
14959328 TAAATT
1 TAAATT
14959334 AGTTATTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
57 8 0.14
58 1 0.02
59 37 0.66
60 10 0.18
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (58 bp):
TAAATTTCTTTTACATTATTATTTTTTAAACTGTTATATATATTTTAGATTATTATTC
Found at i:14959606 original size:163 final size:163
Alignment explanation
Indices: 14959430--14959756 Score: 627
Period size: 163 Copynumber: 2.0 Consensus size: 163
14959420 CTATTTTAAA
* *
14959430 CTTGTTTTTTTATGTATTATTTGTTTAGAATTTTCTTATTATTTATTCTAAATCGTTTATATTAT
1 CTTGTTTTTTTATGTATTATTTGTTTAGAATTGTCTTATTATTTATTCTAAACCGTTTATATTAT
14959495 TTATTTCATTTCTTTACTATTAATGATTAGTATTTAAATAATGTATGTTGTGTGATTGTCACCAT
66 TTATTTCATTTCTTTACTATTAATGATTAGTATTTAAATAATGTATGTTGTGTGATTGTCACCAT
*
14959560 TGTGTATTTCAATTCGCTCATTTCATATTTTTG
131 TGTGTATTTCAATTCGCCCATTTCATATTTTTG
14959593 CTTGTTTTTTTATGTATTATTTGTTTAGAATTGTCTTATTATTTATTCTAAACCGTTTATATTAT
1 CTTGTTTTTTTATGTATTATTTGTTTAGAATTGTCTTATTATTTATTCTAAACCGTTTATATTAT
14959658 TTATTTCATTTCTTTACTATTAATGATTAGTATTTAAATAATGTATGTTGTGTGATTGTCACCAT
66 TTATTTCATTTCTTTACTATTAATGATTAGTATTTAAATAATGTATGTTGTGTGATTGTCACCAT
14959723 TGTGTATTTCAATTCGCCCATTTCATATTTTTG
131 TGTGTATTTCAATTCGCCCATTTCATATTTTTG
14959756 C
1 C
14959757 ATTATTGTTA
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 161 1.00
ACGTcount: A:0.24, C:0.10, G:0.11, T:0.55
Consensus pattern (163 bp):
CTTGTTTTTTTATGTATTATTTGTTTAGAATTGTCTTATTATTTATTCTAAACCGTTTATATTAT
TTATTTCATTTCTTTACTATTAATGATTAGTATTTAAATAATGTATGTTGTGTGATTGTCACCAT
TGTGTATTTCAATTCGCCCATTTCATATTTTTG
Found at i:14960644 original size:17 final size:18
Alignment explanation
Indices: 14960608--14960645 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14960598 GATATGGTTA
*
14960608 AATTTTGTAGCATGGATT
1 AATTTTGTAACATGGATT
*
14960626 AATTTTGTAATAT-GATT
1 AATTTTGTAACATGGATT
14960643 AAT
1 AAT
14960646 AATGTATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (18 bp):
AATTTTGTAACATGGATT
Found at i:14965796 original size:18 final size:19
Alignment explanation
Indices: 14965764--14965802 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
14965754 GGTTTTTTAC
14965764 TAAAAAAATATAAAAA-AA
1 TAAAAAAATATAAAAATAA
14965782 TAAAAAAAT-TCAAAAATAA
1 TAAAAAAATAT-AAAAATAA
14965801 TA
1 TA
14965803 CAGTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.05
18 14 0.74
19 4 0.21
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (19 bp):
TAAAAAAATATAAAAATAA
Found at i:14966120 original size:8 final size:8
Alignment explanation
Indices: 14966107--14966137 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
14966097 GAAAAAGAGA
14966107 GAAGAAGG
1 GAAGAAGG
14966115 GAAGAAGG
1 GAAGAAGG
*
14966123 GAAGAAGA
1 GAAGAAGG
14966131 GAAGAAG
1 GAAGAAG
14966138 AAGAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (8 bp):
GAAGAAGG
Found at i:14966138 original size:8 final size:8
Alignment explanation
Indices: 14966104--14966138 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
14966094 AAAGAAAAAG
14966104 AGAGAAGA
1 AGAGAAGA
*
14966112 AGGGAAGA
1 AGAGAAGA
*
14966120 AGGGAAGA
1 AGAGAAGA
14966128 AGAGAAGA
1 AGAGAAGA
14966136 AGA
1 AGA
14966139 AGAAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (8 bp):
AGAGAAGA
Found at i:14966239 original size:14 final size:14
Alignment explanation
Indices: 14966190--14966252 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
14966180 TGAGAGAAGA
14966190 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
14966202 AAAAAGAGAAGGAGAAG
1 -AAAA-AGAAGGA-AAG
* * *
14966219 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
14966233 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
14966247 AAAAAG
1 AAAAAG
14966253 GTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Found at i:14966239 original size:17 final size:17
Alignment explanation
Indices: 14966195--14966252 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
14966185 GAAGAAAAAA
*
14966195 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
14966213 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
14966232 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
14966246 GAAAAAG
1 GAAAAAG
14966253 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:14966731 original size:30 final size:31
Alignment explanation
Indices: 14966691--14966749 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
14966681 TTTTGTTAAA
14966691 ATAATATAAAAAAATAAAATATGAAAATAGT
1 ATAATATAAAAAAATAAAATATGAAAATAGT
*
14966722 ATAAT-TAAAAAAATAAAATTTGAAAATA
1 ATAATATAAAAAAATAAAATATGAAAATA
14966750 AAAAAATACG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (31 bp):
ATAATATAAAAAAATAAAATATGAAAATAGT
Found at i:14966854 original size:136 final size:133
Alignment explanation
Indices: 14966701--14966957 Score: 311
Period size: 136 Copynumber: 1.9 Consensus size: 133
14966691 ATAATATAAA
** * * * *
14966701 AAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATTTGAAAATAAAAAAATACGAACAAG
1 AAAATAAAATACCAAAATAATATAATTAAAAAAAT--AA--T-AAAAGAAAAAAATACAAACAAA
* **
14966766 GTGCCAAAGTCA-GGTTACTTATTAAATTAATATAAAAAA-ACTTAAATAATACATTTGAATGAT
61 GTGCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAATGAT
14966829 TTTATGCT
126 TTTATGCT
* * * * * *
14966837 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTGCT
1 AAAATAAAATACCAAAATAATATAATTAAAAAAATAATAAAAGAAAAAAATACAAACAAAGTGCC
*
14966902 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAA
66 AAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAA
14966958 GCATTATGTA
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
131 26 0.25
132 25 0.24
133 20 0.19
134 2 0.02
136 30 0.29
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.29
Consensus pattern (133 bp):
AAAATAAAATACCAAAATAATATAATTAAAAAAATAATAAAAGAAAAAAATACAAACAAAGTGCC
AAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAATGATTTTAT
GCT
Found at i:14967018 original size:30 final size:29
Alignment explanation
Indices: 14966972--14967032 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
14966962 TATGTACTAA
14966972 AATAATATAAAGAAATAAAAAACGAAAAT
1 AATAATATAAAGAAATAAAAAACGAAAAT
* *
14967001 AATATATATTAAA-AAATAATATACGAAAAT
1 AATA-ATA-TAAAGAAATAAAAAACGAAAAT
14967031 AA
1 AA
14967033 AAAAATTACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 4 0.14
30 20 0.71
31 4 0.14
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (29 bp):
AATAATATAAAGAAATAAAAAACGAAAAT
Found at i:14967171 original size:15 final size:14
Alignment explanation
Indices: 14967128--14967187 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 14
14967118 TTTTTTTGCT
14967128 AAAATA-ATAT-AA
1 AAAATATATATGAA
* *
14967140 AAAATAAAATAAGAA
1 AAAAT-ATATATGAA
* *
14967155 AAAATATATTTTAA
1 AAAATATATATGAA
14967169 AAAATAATATATGAA
1 AAAAT-ATATATGAA
14967184 AAAA
1 AAAA
14967188 ATACGAATAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 5 0.14
13 1 0.03
14 13 0.35
15 18 0.49
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (14 bp):
AAAATATATATGAA
Found at i:14967230 original size:302 final size:290
Alignment explanation
Indices: 14966837--14968194 Score: 1387
Period size: 302 Copynumber: 4.6 Consensus size: 290
14966827 ATTTTATGCT
* *
14966837 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
*
14966902 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAGCATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
* *
14966967 ACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATATTAAAAAATAATATACGAAAATA
131 ACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATTTTAAAAAATAAGATACG-----A
* *
14967032 AAAAAATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAAC
191 AAAAAA-TACGAA-AAAGTGTCAAAATCAGGGTTATTTA-T--TAAA---TTAATATAAA-AAAC
**
14967097 AGTT-AATTAATACATTTG-AATTTTTTTTGCTAAAATAATATAA
247 A-TTAAATTAATACATTTGAAACATTTTTTGCTAAAATAATATAA
* *
14967140 AAAATAAAATAAGAAAA-AATATATTTTAAAAAATAATATATGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* *
14967204 AAAATCAGGGATATTTATTGAAAAAATATAAAAAATA-TTGAAATAATACATTTGAAACATTATG
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTT-AAATAATACATTTGAAACATTATG
* *
14967268 TACTAAAATAATATGAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATAC-AAAAA
130 TACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATTTTAAAAAATAAGATACGAAAAA
* *
14967332 AATACGAAAAAAGTGTTAAAATCAGGGTTATTTATTAAATTAGTATAAAAAACACTTACATAATA
195 AATACG-AAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACA--T---TAA-A
14967397 TACATAATACATTTGAAACATTTTTTGCTAAAATAATATAA
253 T---TAATACATTTGAAACATTTTTTGCTAAAATAATATAA
* *
14967438 AAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATATGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* ** * * *
14967502 AAAATTAGGGTTATTTATTAAAAAAATATTTAAAA-CCTTAAATAATATATTTAAAACATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
* * * *
14967566 ACTAAAATAAGGGTTTTAA-AATTAAATAATACGAAAGTAATATA-TTTAAAAAA-AAGATACGA
131 ACTAAAATAA---TATAAAGAAATAAA-AA-ACGAAAATAATATATTTTAAAAAATAAGATACGA
* * *
14967628 AAAAAATACGAAAAAGTGTCAAAATCAGTGTTATTTATTAAATTAATATAAAAAATATTGAAA-C
191 AAAAAATACGAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACATT-AAATT
* * *
14967692 AATACATTTGAAACATTATGTACTAAAATAATATGAA
255 AATACATTTGAAACATTTTTTGCTAAAATAATAT-AA
* * *
14967729 GAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATAC-AAAAAAATACGAAAAAAGTG-T
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
** *
14967792 CAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATATACATAATACATTTG
66 -AAAATCAGGGTTATTTATTAAA--AAAATATAAAAA-A--TAC-T--TA-A-ATAATACATTTG
* * * * * * *
14967857 AAACATTTTTTGCTAAAATAATATAAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAAT
120 AAACATTATGTACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATTTTAAAAAATAAG
* * ** **
14967922 ATACG-AAAAAATATGAATAAAGTG-CTAAAATCTGGGTTATTTATTAAAAAAATATTTAAAACA
185 ATACGAAAAAAATACGAA-AAAGTGTC-AAAATCAGGGTTATTTATTAAATTAATATAAAAAACA
* * * * * * *
14967985 CTTAAA-TAATATATTTAAAACATTATGTACTAAAATAATGGTTTTA
248 -TTAAATTAATACATTTGAAACATTTTTTGCTAAAATAA---TATAA
* * *
14968031 AAATTAAATAATACGAAAGTAATATA-TTT-AAAAA-AAGATACGAAAAAAATACGAA-AAAGTG
1 AAAAT-AA-AATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTG
* ** *
14968092 -TCAAAATCAGTGTTA-TTATTAAATTAATATAAAAAAATACTTACATAATAATACATTTAAAAC
64 CT-AAAATCAGGGTTATTTATTAAAAAAATAT-AAAAAATACTT--A-AATAATACATTTGAAAC
* * * *
14968155 ATT-TTTGCTAAAATAATATAAA-AAATAATATACGAAAATA
124 ATTATGTACTAAAATAATATAAAGAAATAAAAAACGAAAATA
14968195 TTTTACTTAT
Statistics
Matches: 915, Mismatches: 90, Indels: 111
0.82 0.08 0.10
Matches are distributed among these distances:
288 5 0.01
289 10 0.01
290 32 0.03
291 79 0.09
292 20 0.02
293 28 0.03
294 24 0.03
295 33 0.04
296 12 0.01
297 46 0.05
298 108 0.12
299 111 0.12
300 116 0.13
301 45 0.05
302 208 0.23
303 22 0.02
304 16 0.02
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (290 bp):
AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
ACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAA
ATACGAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACATTAAATTAATACA
TTTGAAACATTTTTTGCTAAAATAATATAA
Found at i:14967552 original size:21 final size:20
Alignment explanation
Indices: 14967519--14967558 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
14967509 GGGTTATTTA
14967519 TTAAAAAAATATTTAAAACC
1 TTAAAAAAATATTTAAAACC
*
14967539 TTAAATAATATATTTAAAAC
1 TTAAA-AAAATATTTAAAAC
14967559 ATTATGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (20 bp):
TTAAAAAAATATTTAAAACC
Found at i:14967717 original size:444 final size:444
Alignment explanation
Indices: 14966838--14968194 Score: 1828
Period size: 444 Copynumber: 3.0 Consensus size: 444
14966828 TTTTATGCTA
* * *
14966838 AAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATAC-AAATAAAGTGCT
1 AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATAC-AAAAAAATACGAAA-AAAGTGTT
** *
14966902 AAAATCAGGGTTATTTATTAAAAAAATAT-AAAAA-A--TAC-T--TA-A-ATAATACATTTGAA
64 AAAATCAGGGTTATTTATTAAATTAGTATAAAAAACACTTACATAATATACATAATACATTTGAA
* * * * * * *
14966958 GCATTATGTACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATATTAAAAAATAATAT
129 ACATTTTTTGCTAAAATAATATAAA-AAATAAAATAGGAAAATAATATATTTTAAAAAATAATAT
* * * * *
14967023 ACGAAAATAAAAAAATTACGAAGAAAGT-ATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAAT
193 ACG------AAAAAA-TATGAATAAAGTGCT-AAAATTAGGGTTATTTA-TTAAAAA-----AAT
** * * * * ** * * * * * *
14967087 ATAAAGAAACAGTTAATTAATACATTT-GAATTTTTTTTGCTAAAATAA--TATAAAAAAT-AA-
244 ATTTA-AAACACTTAAATAATATATTTAAAACATTATGTACTAAAATAAGGTTTTAAAATTAAAT
* * * *
14967147 AATAAGAAA-AAATATATTTTAAAAAATAATATATGAAAAAAATACGAATAAAGTG-CTAAAATC
308 AATACGAAAGTAATATA-TTTAAAAAA-AAGATACGAAAAAAATACGAA-AAAGTGTC-AAAATC
* * *
14967210 AGGGATATTTATTGAAA-AAATATAAAAAATATTGAAATAATACATTTGAAACATTATGTACTAA
369 AGTGTTATTTATT-AAATTAATATAAAAAATATTGAAATAATACATTTGAAACATTATGTACTAA
14967274 AATAATATGAAG
433 AATAATATGAAG
14967286 AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTTAA
1 AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTTAA
14967351 AATCAGGGTTATTTATTAAATTAGTATAAAAAACACTTACATAATATACATAATACATTTGAAAC
66 AATCAGGGTTATTTATTAAATTAGTATAAAAAACACTTACATAATATACATAATACATTTGAAAC
14967416 ATTTTTTGCTAAAATAATATAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG
131 ATTTTTTGCTAAAATAATATAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG
14967481 AAAAAATATGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAAATATTTAAAAC-CTTAAAT
196 AAAAAATATGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAAATATTTAAAACACTTAAAT
14967545 AATATATTTAAAACATTATGTACTAAAATAAGGGTTTTAAAATTAAATAATACGAAAGTAATATA
261 AATATATTTAAAACATTATGTACTAAAATAA-GGTTTTAAAATTAAATAATACGAAAGTAATATA
14967610 TTTAAAAAAAAGATACGAAAAAAATACGAAAAAGTGTCAAAATCAGTGTTATTTATTAAATTAAT
325 TTTAAAAAAAAGATACGAAAAAAATACGAAAAAGTGTCAAAATCAGTGTTATTTATTAAATTAAT
*
14967675 ATAAAAAATATTGAAACAATACATTTGAAACATTATGTACTAAAATAATATGAAG
390 ATAAAAAATATTGAAATAATACATTTGAAACATTATGTACTAAAATAATATGAAG
*
14967730 AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTCAA
1 AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTTAA
14967795 AATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATATACATAATACATTTGAAA
66 AATCAGGGTTATTTATTAAATTAGTAT-AAAAAACACTTACATAATATACATAATACATTTGAAA
14967860 CATTTTTTGCTAAAATAATATAAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATA
130 CATTTTTTGCTAAAATAATAT-AAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATA
14967925 CGAAAAAATATGAATAAAGTGCTAAAATCT-GGGTTATTTATTAAAAAAATATTTAAAACACTTA
194 CGAAAAAATATGAATAAAGTGCTAAAAT-TAGGGTTATTTATTAAAAAAATATTTAAAACACTTA
14967989 AATAATATATTTAAAACATTATGTACTAAAATAATGGTTTTAAAATTAAATAATACGAAAGTAAT
258 AATAATATATTTAAAACATTATGTACTAAAATAA-GGTTTTAAAATTAAATAATACGAAAGTAAT
14968054 ATATTT-AAAAAAAGATACGAAAAAAATACGAAAAAGTGTCAAAATCAGTGTTA-TTATTAAATT
322 ATATTTAAAAAAAAGATACGAAAAAAATACGAAAAAGTGTCAAAATCAGTGTTATTTATTAAATT
* * * * *
14968117 AATATAAAAAAATACTTACATAATAATACATTTAAAACATT-TTTGCTAAAATAATAT-AAA
387 AATAT-AAAAAATA-TT-GA-AATAATACATTTGAAACATTATGTACTAAAATAATATGAAG
*
14968177 AAATAATATACGAAAATA
1 AAATAAAATACGAAAATA
14968195 TTTTACTTAT
Statistics
Matches: 832, Mismatches: 49, Indels: 57
0.89 0.05 0.06
Matches are distributed among these distances:
440 13 0.02
441 19 0.02
442 6 0.01
443 3 0.00
444 178 0.21
445 95 0.11
446 172 0.21
447 151 0.18
448 88 0.11
449 26 0.03
451 3 0.00
452 1 0.00
454 2 0.00
455 40 0.05
456 35 0.04
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (444 bp):
AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTTAA
AATCAGGGTTATTTATTAAATTAGTATAAAAAACACTTACATAATATACATAATACATTTGAAAC
ATTTTTTGCTAAAATAATATAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG
AAAAAATATGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAAATATTTAAAACACTTAAAT
AATATATTTAAAACATTATGTACTAAAATAAGGTTTTAAAATTAAATAATACGAAAGTAATATAT
TTAAAAAAAAGATACGAAAAAAATACGAAAAAGTGTCAAAATCAGTGTTATTTATTAAATTAATA
TAAAAAATATTGAAATAATACATTTGAAACATTATGTACTAAAATAATATGAAG
Found at i:14967786 original size:155 final size:146
Alignment explanation
Indices: 14966837--14968194 Score: 1124
Period size: 145 Copynumber: 9.1 Consensus size: 146
14966827 ATTTTATGCT
* *
14966837 AAAATAAAATACCAAAATAATATATTTTAAAAAAT-A-ATATACGAAAAAAATACAAATAAAGTG
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACG-AAAAAATACGAA-AAAGTG
** * * *
14966900 -CTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTA-AATAATACATTTGAAGCATT
64 TC-AAAATCAGGGTTATTTATTAAATTAATATAAAAAATACTTATAACAATACATTTAAAACATT
14966963 ATGTACTAAAATAATATAA
128 ATGTACTAAAATAATATAA
* *
14966982 AGAAATAAAAAACGAAAATAATATATATTAAAAAAT-A-ATATACGAAAATAAAAAAATTACGAA
1 A-AAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACG------AAAAAA-TACGAA
* * * * **
14967045 GAAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAACAGTTA-ATTAATA
58 -AAAGTGTCAAAATCAGGGTTATTTA-T--TAAA---TTAATATAAA-AAATACTTATAACAATA
* ** * * *
14967109 CATTT-GAATTTTTTTTGCTAAAATAATATAA
115 CATTTAAAACATTATGTACTAAAATAATATAA
* *
14967140 AAAATAAAATAAGAAAA-AATATATTTTAAAAAAT-A-ATATATGAAAAAAATACGAATAAAGTG
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACG-AAAAAATACGAA-AAAGTG
* * * *
14967202 -CTAAAATCAGGGATATTTATTGAAA-AAATATAAAAAATA-TTGA-AATAATACATTTGAAACA
64 TC-AAAATCAGGGTTATTTATT-AAATTAATATAAAAAATACTT-ATAACAATACATTTAAAACA
14967263 TTATGTACTAAAATAATATGAA
126 TTATGTACTAAAATAATAT-AA
* *
14967285 GAAATAAAATACGAAAATAATATATTTTAAAAAATAAG--ATACAAAAAAATACGAAAAAAGTGT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACGAAAAAATACG-AAAAAGTGT
* * * *
14967348 TAAAATCAGGGTTATTTATTAAATTAGTATAAAAAACACTTACATAATATACATAATACATTTGA
65 CAAAATCAGGGTTATTTATTAAATTAATAT-AAAAA-A--TAC-T--TATA-ACAATACATTTAA
* * *
14967413 AACATTTTTTGCTAAAATAATATAA
122 AACATTATGTACTAAAATAATATAA
* *
14967438 AAAATAAAATAGGAAAATAATATATTTTAAAAAAT-A-ATATACGAAAAAATATGAATAAAGTG-
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACGAAAAAATACGAA-AAAGTGT
* ** ** * * *
14967500 CTAAAATTAGGGTTATTTATTAAAAAAATATTTAAAA-CCTTA-AATAATATATTTAAAACATTA
65 C-AAAATCAGGGTTATTTATTAAATTAATATAAAAAATACTTATAACAATACATTTAAAACATTA
* *
14967563 TGTACTAAAATAAGGGTTTTA
129 TGTACTAAAATAA---TATAA
* *
14967584 AAATTAAATAATACGAAAGTAATATA-TTTAAAAAA-AAG--ATACGAAAAAAATACGAAAAAGT
1 AAAAT-AA-AATACGAAAATAATATATTTTAAAAAATAAGATATACG-AAAAAATACGAAAAAGT
* *
14967645 GTCAAAATCAGTGTTATTTATTAAATTAATATAAAAAATA-TTGA-AACAATACATTTGAAACAT
63 GTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAATACTT-ATAACAATACATTTAAAACAT
14967708 TATGTACTAAAATAATATGAA
127 TATGTACTAAAATAATAT-AA
* *
14967729 GAAATAAAATACGAAAATAATATATTTTAAAAAATAAG--ATACAAAAAAATACGAAAAAAGTGT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACGAAAAAATACG-AAAAAGTGT
* * *
14967792 CAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATATACATAATACATTTG
65 CAAAATCAGGGTTATTTATTAAATTA--ATATAAAAA-A--TAC-T--TATA-ACAATACATTTA
* * *
14967857 AAACATTTTTTGCTAAAATAATATAAA
121 AAACATTATGTACTAAAATAATAT-AA
* *
14967884 AAAATAAAATAGGAAAATAATATATTTTAAAAAAT-A-ATATACGAAAAAATATGAATAAAGTG-
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACGAAAAAATACGAA-AAAGTGT
* ** ** * * *
14967946 CTAAAATCTGGGTTATTTATTAAAAAAATATTTAAAACACTTA-AATAATATATTTAAAACATTA
65 C-AAAATCAGGGTTATTTATTAAATTAATATAAAAAATACTTATAACAATACATTTAAAACATTA
* *
14968010 TGTACTAAAATAATGGTTTTA
129 TGTACTAAAATAA---TATAA
* *
14968031 AAATTAAATAATACGAAAGTAATATA-TTT-AAAAA-AAG--ATACGAAAAAAATACGAAAAAGT
1 AAAAT-AA-AATACGAAAATAATATATTTTAAAAAATAAGATATACG-AAAAAATACGAAAAAGT
* *
14968091 GTCAAAATCAGTGTTA-TTATTAAATTAATATAAAAAAATACTTACATAATAATACATTTAAAAC
63 GTCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAATACTT--ATAACAATACATTTAAAAC
* *
14968155 ATT-TTTGCTAAAATAATATAA
125 ATTATGTACTAAAATAATATAA
*
14968176 AAAATAATATACGAAAATA
1 AAAATAAAATACGAAAATA
14968195 TTTTACTTAT
Statistics
Matches: 1000, Mismatches: 130, Indels: 168
0.77 0.10 0.13
Matches are distributed among these distances:
142 2 0.00
143 70 0.07
144 55 0.05
145 151 0.15
146 146 0.15
147 92 0.09
148 39 0.04
149 39 0.04
150 31 0.03
151 16 0.02
152 36 0.04
153 90 0.09
154 39 0.04
155 111 0.11
156 23 0.02
157 14 0.01
158 28 0.03
159 18 0.02
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (146 bp):
AAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATATACGAAAAAATACGAAAAAGTGTC
AAAATCAGGGTTATTTATTAAATTAATATAAAAAATACTTATAACAATACATTTAAAACATTATG
TACTAAAATAATATAA
Found at i:14967879 original size:599 final size:594
Alignment explanation
Indices: 14966837--14968194 Score: 1488
Period size: 599 Copynumber: 2.3 Consensus size: 594
14966827 ATTTTATGCT
14966837 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTGCT
1 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTGCT
* *
14966902 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAGCATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTAAAACATTATGT
*
14966967 ACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATATTAAAAAATAATATACGAAAATA
131 ACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATATTAAAAAATAAGATACG---A-A
14967032 AAAAAATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAAC
192 AAAAAATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGT-AAAAA--CTTAATATAAAGAAAC
** ** * * *
14967097 AGTTAATTAATACATTTGAATTTTTTTTGCTAAAATAATATAAAAAATAAAATAAGAAAAAATAT
254 AGTTAAACAATACATTTGAACATTATGTACTAAAATAATATAAAAAATAAAATAAGAAAAAATAT
* * *
14967162 ATTTTAAAAAATAATATATGAAAAAAATACGAATAAAGTGCTAAAATCAGGGATATTTATTGAAA
319 ATTTTAAAAAATAAGATATCAAAAAAATACGAAAAAAGTGCTAAAATCAGGGATATTTATTGAAA
* * *
14967227 AAATATAAAAAATATTGAAATAATACATTTGAAACATTATGTACTAAAATAATATGAAGAAATAA
384 AAATAAAAAAAATATTGAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAA
*
14967292 AATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTTAAAATCAG
449 AATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGCTAAAATCAG
** * *
14967357 GGTTATTTATTAAATTAGTATAAAAAACACTTACATAATATACATAATACATTTGAAACATTTTT
514 GGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATATACATAATACATTTGAAACATTTTT
14967422 TGCTAAAATAATATAA
579 TGCTAAAATAATATAA
** **
14967438 AAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATATGAATAAAGTGCT
1 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTGCT
* ** * *
14967502 AAAATTAGGGTTATTTATTAAAAAAATATTTAAAA-CCTTAAATAATATATTTAAAACATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTAAAACATTATGT
* * * *
14967566 ACTAAAATAAGGGTTTTAA-AATTAAATAATACGAAAGTAATATAT-TTAAAAAA-AAGATACG-
131 ACTAAAATAA---TATAAAGAAATAAA-AA-ACGAAAATAATATATATTAAAAAATAAGATACGA
* * * *
14967627 AAAAAAA-TACGAA-AAAGTGTCAAAATCAGTGTTATTTA-T-TAAA-TTAATATAAA-AAATA-
191 AAAAAAATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGTAAAAACTTAATATAAAGAAACAG
* *
14967685 TTGAAACAATACATTTGAAACATTATGTACTAAAATAATATGAAGAAATAAAATACGAAAATAAT
256 TT-AAACAATACATTTG-AACATTATGTACTAAAATAATAT-AAAAAATAAAATAAGAAAA-AAT
*
14967750 ATATTTTAAAAAATAAGATA-CAAAAAAATACGAAAAAAGTG-TCAAAATCAGGGTTATTTATT-
317 ATATTTTAAAAAATAAGATATCAAAAAAATACGAAAAAAGTGCT-AAAATCAGGGATATTTATTG
* * * *
14967812 AAATTAGTATAAAAAAACACTTACATAAT-ATACATAATACATTTGAAACATTTTTTGCTAAAAT
381 AAA--A-AATAAAAAAA-A--T--AT--TGA-A-ATAATACATTTGAAACATTATGTACTAAAAT
* * * * *
14967876 AATATAAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACGAAAAAATATGAATA
434 AATATAAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAA
* **
14967941 AAGTGCTAAAATCTGGGTTATTTATTAAAAAAATATTTAAAACAC-T---TAA-ATA-AT-AT--
499 AAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATATACATAATAC
* * * * * *
14967997 ATTTAAAACATTATGTACTAAAATAATGGTTTTA
564 ATTTGAAACATTTTTTGCTAAAATAA---TATAA
* * * * *
14968031 AAATTAAATAATACGAAAGTAATATA-TTT-AAAAA-AAGATACGAAAAAAATACGAA-AAAGTG
1 AAAAT-AA-AATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTG
* **
14968092 -TCAAAATCAGTGTTA-TTATTAAATTAATATAAAAAAATACTTACATAATAATACATTTAAAAC
64 CT-AAAATCAGGGTTATTTATTAAAAAAATAT-AAAAAATACTT--A-AATAATACATTTAAAAC
* * * *
14968155 ATT-TTTGCTAAAATAATATAAA-AAATAATATACGAAAATA
124 ATTATGTACTAAAATAATATAAAGAAATAAAAAACGAAAATA
14968195 TTTTACTTAT
Statistics
Matches: 644, Mismatches: 79, Indels: 79
0.80 0.10 0.10
Matches are distributed among these distances:
586 2 0.00
587 16 0.02
588 32 0.05
589 54 0.08
590 53 0.08
591 26 0.04
592 40 0.06
593 29 0.05
594 32 0.05
595 36 0.06
596 28 0.04
597 1 0.00
598 3 0.00
599 159 0.25
600 51 0.08
601 54 0.08
602 14 0.02
603 14 0.02
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (594 bp):
AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACAAATAAAGTGCT
AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTAAAACATTATGT
ACTAAAATAATATAAAGAAATAAAAAACGAAAATAATATATATTAAAAAATAAGATACGAAAAAA
AATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGTAAAAACTTAATATAAAGAAACAGTTAAA
CAATACATTTGAACATTATGTACTAAAATAATATAAAAAATAAAATAAGAAAAAATATATTTTAA
AAAATAAGATATCAAAAAAATACGAAAAAAGTGCTAAAATCAGGGATATTTATTGAAAAAATAAA
AAAAATATTGAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGA
AAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGCTAAAATCAGGGTTATT
TATTAAAAAAATATAAAAAACACTTAAATAATATACATAATACATTTGAAACATTTTTTGCTAAA
ATAATATAA
Found at i:14967930 original size:15 final size:14
Alignment explanation
Indices: 14967871--14967934 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
14967861 ATTTTTTGCT
14967871 AAAATAATATA-AA
1 AAAATAATATAGAA
*
14967884 AAAATAAAATAGGAA
1 AAAATAATATA-GAA
**
14967899 AATAAT-ATATTTTAA
1 AA-AATAATA-TAGAA
14967914 AAAATAATATACGAA
1 AAAATAATATA-GAA
14967929 AAAATA
1 AAAATA
14967935 TGAATAAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 10 0.26
14 4 0.10
15 21 0.54
16 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.25
Consensus pattern (14 bp):
AAAATAATATAGAA
Found at i:14967989 original size:21 final size:22
Alignment explanation
Indices: 14967965--14968006 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
14967955 GGGTTATTTA
14967965 TTAAA-AAAATATTTAAAACAC
1 TTAAATAAAATATTTAAAACAC
*
14967986 TTAAATAATATATTTAAAACA
1 TTAAATAAAATATTTAAAACA
14968007 TTATGTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
TTAAATAAAATATTTAAAACAC
Found at i:14970154 original size:72 final size:72
Alignment explanation
Indices: 14970061--14970201 Score: 237
Period size: 72 Copynumber: 2.0 Consensus size: 72
14970051 AGTCCGAGCG
*
14970061 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACTATTTCCCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCGG
14970126 GCTCGTC
66 GCTCGTC
* * * *
14970133 ATCGCATTCACTTTCGGCTGATACTTCTTATCATCCGGATTTTGCAGGCAATGACAATTTCTCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCGG
14970198 GCTC
66 GCTC
14970202 ATCGGGGGGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (72 bp):
ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCGG
GCTCGTC
Found at i:14970295 original size:33 final size:32
Alignment explanation
Indices: 14970249--14970321 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
14970239 GGGTCGTACA
14970249 CACCGCAGCATAGCACCT-CTCCCGGCCCATATC
1 CACCGCAGCATAGCA-CTGC-CCCGGCCCATATC
** *
14970282 CACCGCATTATAGCACTGCCCCGGCCCGTATC
1 CACCGCAGCATAGCACTGCCCCGGCCCATATC
*
14970314 CACTGCAG
1 CACCGCAG
14970322 TACTCCACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 20 0.59
33 14 0.41
ACGTcount: A:0.21, C:0.45, G:0.18, T:0.16
Consensus pattern (32 bp):
CACCGCAGCATAGCACTGCCCCGGCCCATATC
Found at i:14974361 original size:15 final size:16
Alignment explanation
Indices: 14974342--14974403 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 16
14974332 TACCTTCTTT
14974342 TTTTCTTCTCCTTCT-
1 TTTTCTTCTCCTTCTA
*
14974357 TTTTCTTCCTTCTCTTCTC
1 TTTTCTT-C-TC-CTTCTA
* *
14974376 CTTTCTT-TCCTTTTA
1 TTTTCTTCTCCTTCTA
14974391 TTTTCTTCTCCTT
1 TTTTCTTCTCCTT
14974404 ACTGCTGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
15 17 0.45
16 8 0.21
17 2 0.05
18 5 0.13
19 6 0.16
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTCTTCTCCTTCTA
Found at i:14974564 original size:14 final size:15
Alignment explanation
Indices: 14974545--14974583 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
14974535 TCCCCTTTTT
14974545 TTTTTTTTTTCAG-C
1 TTTTTTTTTTCAGAC
*
14974559 TTTTTTTTTTCAGAG
1 TTTTTTTTTTCAGAC
14974574 TTTTTTTTTT
1 TTTTTTTTTT
14974584 ACTGTTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTTCAGAC
Found at i:14974703 original size:19 final size:19
Alignment explanation
Indices: 14974676--14974715 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14974666 TTTTTTACTG
14974676 TATTATTTTTGA-ATTTTTT
1 TATTATTTTT-ATATTTTTT
*
14974695 TATTTTTTTTATATTTTTT
1 TATTATTTTTATATTTTTT
14974714 TA
1 TA
14974716 GTAAAAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (19 bp):
TATTATTTTTATATTTTTT
Found at i:14974797 original size:4 final size:4
Alignment explanation
Indices: 14974771--14974819 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
14974761 GAAAATAGTC
* * * *
14974771 ATAT ATCT ATCT ATCT ATCT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
14974819 A
1 A
14974820 ATACTTCAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (4 bp):
ATAT
Found at i:14985433 original size:2 final size:2
Alignment explanation
Indices: 14985426--14985458 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14985416 TTTTTAGTCT
14985426 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14985459 TTGAAATGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14985999 original size:2 final size:2
Alignment explanation
Indices: 14985992--14986016 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14985982 ACCAACCACA
14985992 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14986017 ACAGAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14996125 original size:88 final size:88
Alignment explanation
Indices: 14996012--14996187 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
14996002 TCTCCTCGCA
14996012 AAAGAGGAACGACACATGTAACACATTCATGTAGAGTACATTCGAGTTGTTTTAGTACTCAATTC
1 AAAGAGGAACGACACATGTAACACATTCATGTAGAGTACATTCGAGTTGTTTTAGTACTCAATTC
14996077 ATTAATTCTAGCCAAGTCTCAAC
66 ATTAATTCTAGCCAAGTCTCAAC
14996100 AAAGAGGAACGACACATGTAACACATTCATGTAGAGTACATTCGAGTTGTTTTAGTACTCAATTC
1 AAAGAGGAACGACACATGTAACACATTCATGTAGAGTACATTCGAGTTGTTTTAGTACTCAATTC
*
14996165 GTTAATTCTAGCCAAGTCTCAAC
66 ATTAATTCTAGCCAAGTCTCAAC
14996188 TGAAGAAGGA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (88 bp):
AAAGAGGAACGACACATGTAACACATTCATGTAGAGTACATTCGAGTTGTTTTAGTACTCAATTC
ATTAATTCTAGCCAAGTCTCAAC
Found at i:14997440 original size:9 final size:9
Alignment explanation
Indices: 14997426--14997450 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14997416 TCAATATAGG
14997426 GAGAGTTTA
1 GAGAGTTTA
14997435 GAGAGTTTA
1 GAGAGTTTA
14997444 GAGAGTT
1 GAGAGTT
14997451 CAACTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (9 bp):
GAGAGTTTA
Found at i:14997558 original size:20 final size:20
Alignment explanation
Indices: 14997517--14997558 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
14997507 TAAATATTAG
* *
14997517 ATTAAATTTAATATAAATTT
1 ATTAAATTTAATAGAAACTT
14997537 ATTAAA-TTAATAGAATACTT
1 ATTAAATTTAATAGAA-ACTT
14997557 AT
1 AT
14997559 CTACAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
ATTAAATTTAATAGAAACTT
Found at i:14997584 original size:60 final size:58
Alignment explanation
Indices: 14997458--14997609 Score: 182
Period size: 60 Copynumber: 2.6 Consensus size: 58
14997448 GTTCAACTAT
** **
14997458 AATTAAATTTAATCACT-TTAATATTAAATTAATTTAATACTTATCAAGATAAATATTA
1 AATTAAATTTAAT-ACTAAAAATATTAAATTAATAGAATACTTATCAAGATAAATATTA
* **
14997516 GATTAAATTTAATA-TAAATTTATTAAATTAATAGAATACTTATCTACAAGATAAATATTA
1 AATTAAATTTAATACTAAAAATATTAAATTAATAGAATACTTA--T-CAAGATAAATATTA
*
14997576 AATTAAATTTAATACTAAAAATATTAAAATAATA
1 AATTAAATTTAATACTAAAAATATTAAATTAATA
14997610 TTATTATTGG
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
56 1 0.01
57 21 0.27
58 12 0.15
59 1 0.01
60 27 0.35
61 16 0.21
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (58 bp):
AATTAAATTTAATACTAAAAATATTAAATTAATAGAATACTTATCAAGATAAATATTA
Found at i:14997915 original size:21 final size:20
Alignment explanation
Indices: 14997898--14997935 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
14997888 GGGTTCACGT
14997898 GCCCAATTTTCGAT-TTCAG
1 GCCCAATTTTCGATCTTCAG
*
14997917 GTCCAATTTTCGATCTTCA
1 GCCCAATTTTCGATCTTCA
14997936 ATTATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (20 bp):
GCCCAATTTTCGATCTTCAG
Found at i:14999162 original size:15 final size:15
Alignment explanation
Indices: 14999142--14999171 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14999132 CTATGCATGG
*
14999142 AAAACACGAAAGACA
1 AAAACACAAAAGACA
14999157 AAAACACAAAAGACA
1 AAAACACAAAAGACA
14999172 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.20, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAACACAAAAGACA
Found at i:15001962 original size:3 final size:3
Alignment explanation
Indices: 15001954--15001980 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15001944 TAGGCTGGGT
15001954 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
15001981 TTATGATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:15001989 original size:3 final size:3
Alignment explanation
Indices: 15001983--15002010 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
15001973 GAAGAAGATT
15001983 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
15002011 AATTGCTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:15004260 original size:42 final size:42
Alignment explanation
Indices: 15004224--15004430 Score: 186
Period size: 42 Copynumber: 4.6 Consensus size: 42
15004214 CATAGTTCAA
*
15004224 CTATGGTCTTACACATCTTCACATAAT-GACACCATAGCCCAG
1 CTATGGTCTTACACATATTCACAT-ATCGACACCATAGCCCAG
* **
15004266 CTATGGTCTTACACATATTTACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATATCGACACCATAGCCCAG
**
15004308 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATATCGACACCATAGCCCAG
**
15004357 CTATGGTCTTACACGGATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC--AT---AT-TCACATATCGACACCATAGCCCAG
15004405 CTATGGTCTTACACGA-A-TCACATATC
1 CTATGGTCTTACAC-ATATTCACATATC
15004431 TCACCGATGC
Statistics
Matches: 150, Mismatches: 7, Indels: 17
0.86 0.04 0.10
Matches are distributed among these distances:
41 11 0.07
42 49 0.33
43 1 0.01
45 2 0.01
47 2 0.01
48 48 0.32
49 37 0.25
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGACACCATAGCCCAG
Found at i:15004396 original size:48 final size:48
Alignment explanation
Indices: 15004277--15004461 Score: 284
Period size: 48 Copynumber: 3.9 Consensus size: 48
15004267 TATGGTCTTA
*
15004277 CACATATTTACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
15004327 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
15004375 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
15004423 CACATATCTC--ACCGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
15004462 TATGGAAATC
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 26 0.20
48 58 0.45
49 38 0.30
50 6 0.05
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:15004529 original size:31 final size:31
Alignment explanation
Indices: 15004483--15004600 Score: 184
Period size: 31 Copynumber: 3.8 Consensus size: 31
15004473 CTTGTCACTT
* *
15004483 GTAGCCGAAGTTACCACTATTCA-TCGATCAG
1 GTAGCCGAAGCTACCACTTTTCACT-GATCAG
* *
15004514 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
15004545 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
15004576 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
15004601 TGTCATTCGT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 79 0.99
32 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:15004676 original size:50 final size:50
Alignment explanation
Indices: 15004576--15004801 Score: 337
Period size: 50 Copynumber: 4.5 Consensus size: 50
15004566 CACTGATCAG
* * *
15004576 GTAGCCGAAGCTACCACTTTTCACTTGTCA-TTCGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTT-GTCCTTGATCAGATAAGT
* *
15004627 GTAGTCGAAGCCATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
*
15004677 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
15004727 GTAGCCGAAGCTATCACTTATAACTTTCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
15004777 GTAGACAAAGCTATCACTTATCACT
1 GTAGCCGAAGCTATCACTTATCACT
15004802 GGTTGCCATA
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 136 0.85
51 24 0.15
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:15007483 original size:21 final size:21
Alignment explanation
Indices: 15007459--15007511 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
15007449 AGGTCTACAT
*
15007459 GCCCATGT-AGAGGCCTCACAC
1 GCCCATGTGA-AGGCCCCACAC
*
15007480 GCCCGTGTGAAGGCCCCACAC
1 GCCCATGTGAAGGCCCCACAC
* *
15007501 GTCCGTGTGAA
1 GCCCATGTGAA
15007512 TAGCCTGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (21 bp):
GCCCATGTGAAGGCCCCACAC
Found at i:15010760 original size:43 final size:44
Alignment explanation
Indices: 15010671--15010785 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 44
15010661 TGTGATTACA
* *
15010671 TGTAAGACCGTGTCTGGGACATTGGCAT-TGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCTGTAATGAGATTATG
* *
15010714 TGTAATACCATGTCTGGGACATTGGCATCAT-TAAT-CGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCATC-TGTAATGAGATTAT-G
* * *
15010757 TGTAAGACCCTGTCTGGAACAGTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
15010786 GATATATAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.02
43 56 0.92
44 3 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATTGGCATCTGTAATGAGATTATG
Found at i:15012385 original size:46 final size:44
Alignment explanation
Indices: 15012326--15012440 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
15012316 ACAGGACAGA
* *
15012326 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
15012372 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
15012416 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
15012441 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:15012421 original size:44 final size:45
Alignment explanation
Indices: 15012326--15012459 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
15012316 ACAGGACAGA
* *
15012326 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
15012372 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
15012416 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
15012460 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:15015579 original size:13 final size:14
Alignment explanation
Indices: 15015541--15015581 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
15015531 ATGGGGATAG
15015541 GATTCTGTATATCT
1 GATTCTGTATATCT
* *
15015555 GGTT-TGTTTATCT
1 GATTCTGTATATCT
15015568 GATTCTG-ATATCT
1 GATTCTGTATATCT
15015581 G
1 G
15015582 TATCTGATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.17, C:0.12, G:0.20, T:0.51
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:15016143 original size:41 final size:41
Alignment explanation
Indices: 15016098--15016180 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
15016088 AATAACTAAA
15016098 CATGGTTTTATCAATGTAACGTCAGTTCCAAAACCCTTATT
1 CATGGTTTTATCAATGTAACGTCAGTTCCAAAACCCTTATT
15016139 CATGGTTTTATCAATGTAACGTCAGTTCCAAAACCCTTATT
1 CATGGTTTTATCAATGTAACGTCAGTTCCAAAACCCTTATT
15016180 C
1 C
15016181 GTAACACCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (41 bp):
CATGGTTTTATCAATGTAACGTCAGTTCCAAAACCCTTATT
Found at i:15020902 original size:12 final size:12
Alignment explanation
Indices: 15020885--15020909 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15020875 TGTGAAAAAT
15020885 AAAATAAAATAA
1 AAAATAAAATAA
15020897 AAAATAAAATAA
1 AAAATAAAATAA
15020909 A
1 A
15020910 GAACACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:15027568 original size:43 final size:43
Alignment explanation
Indices: 15027505--15027613 Score: 164
Period size: 43 Copynumber: 2.5 Consensus size: 43
15027495 GTTTATTTAA
*
15027505 AAAAACGCCGCTAAAGGTCATGACCTTTAACGGCGCTTTTCCC
1 AAAAACGCCGCTAAAGGTCATGACCTTTAACGGCGCTTTACCC
* * *
15027548 ACAAACGCCGCTAAATGTCATGACCTTTAGCGGCGCTTTACCC
1 AAAAACGCCGCTAAAGGTCATGACCTTTAACGGCGCTTTACCC
* *
15027591 AAAAACGCCACTAAAGGTAATGA
1 AAAAACGCCGCTAAAGGTCATGA
15027614 AATTTTAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.21
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGGTCATGACCTTTAACGGCGCTTTACCC
Found at i:15031554 original size:8 final size:7
Alignment explanation
Indices: 15031537--15031628 Score: 112
Period size: 7 Copynumber: 12.6 Consensus size: 7
15031527 CCACTATTGA
15031537 TTAATTT
1 TTAATTT
*
15031544 TAAATTT
1 TTAATTT
15031551 TTAAGTTT
1 TTAA-TTT
15031559 TTAATTTT
1 TTAA-TTT
15031567 TTAATTT
1 TTAATTT
15031574 TTAATTT
1 TTAATTT
*
15031581 TTTATTT
1 TTAATTT
*
15031588 TTAAATT
1 TTAATTT
15031595 TTAATTTT
1 TTAA-TTT
15031603 TTAATTTT
1 TTAA-TTT
15031611 TTAATTT
1 TTAATTT
*
15031618 TTATTTT
1 TTAATTT
15031625 TTAA
1 TTAA
15031629 GTTTATTTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
7 46 0.62
8 28 0.38
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (7 bp):
TTAATTT
Found at i:15031565 original size:22 final size:22
Alignment explanation
Indices: 15031537--15031633 Score: 117
Period size: 22 Copynumber: 4.4 Consensus size: 22
15031527 CCACTATTGA
*
15031537 TTAATTTTAAATTTTTAAGTTT
1 TTAATTTTAAATTTTTAATTTT
*
15031559 TTAATTTTTTAATTTTTAATTTT
1 TTAA-TTTTAAATTTTTAATTTT
*
15031582 TTATTTTTAAA-TTTTAATTTT
1 TTAATTTTAAATTTTTAATTTT
*
15031603 TTAATTTTTTAATTTTT-ATTTT
1 TTAA-TTTTAAATTTTTAATTTT
*
15031625 TTAAGTTTA
1 TTAATTTTA
15031634 TTTTTTATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
21 16 0.25
22 25 0.39
23 23 0.36
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (22 bp):
TTAATTTTAAATTTTTAATTTT
Found at i:15031640 original size:7 final size:7
Alignment explanation
Indices: 15031556--15031643 Score: 79
Period size: 7 Copynumber: 12.4 Consensus size: 7
15031546 AATTTTTAAG
*
15031556 TTTTTAA
1 TTTTTTA
15031563 TTTTTTAA
1 TTTTTT-A
*
15031571 TTTTTAA
1 TTTTTTA
15031578 TTTTTTA
1 TTTTTTA
*
15031585 TTTTTAA
1 TTTTTTA
* *
15031592 ATTTTAA
1 TTTTTTA
15031599 TTTTTTAA
1 TTTTTT-A
15031607 TTTTTTA
1 TTTTTTA
*
15031614 ATTTTTA
1 TTTTTTA
15031621 TTTTTTA
1 TTTTTTA
**
15031628 -AGTTTA
1 TTTTTTA
15031634 TTTTTTA
1 TTTTTTA
15031641 TTT
1 TTT
15031644 CGGTTTAATG
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
6 4 0.06
7 48 0.74
8 13 0.20
ACGTcount: A:0.24, C:0.00, G:0.01, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:15031652 original size:37 final size:36
Alignment explanation
Indices: 15031558--15031640 Score: 125
Period size: 36 Copynumber: 2.3 Consensus size: 36
15031548 TTTTTAAGTT
*
15031558 TTTAATTTTTTAA-TTTTTAATTTTTTATTTTTAAAT
1 TTTAATTTTTTAATTTTTTAA-TTTTTATTTTTAAAG
*
15031594 TTTAATTTTTTAATTTTTTAATTTTTATTTTTTAAG
1 TTTAATTTTTTAATTTTTTAATTTTTATTTTTAAAG
15031630 TTT-ATTTTTTA
1 TTTAATTTTTTA
15031641 TTTCGGTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 8 0.18
36 29 0.66
37 7 0.16
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.73
Consensus pattern (36 bp):
TTTAATTTTTTAATTTTTTAATTTTTATTTTTAAAG
Found at i:15032418 original size:16 final size:17
Alignment explanation
Indices: 15032393--15032426 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15032383 AAAGTTATAG
15032393 TTTAGCGTTTAGG-GTT
1 TTTAGCGTTTAGGAGTT
*
15032409 TTTAGGGTTTAGGAGTT
1 TTTAGCGTTTAGGAGTT
15032426 T
1 T
15032427 AATATTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.15, C:0.03, G:0.32, T:0.50
Consensus pattern (17 bp):
TTTAGCGTTTAGGAGTT
Found at i:15032548 original size:41 final size:41
Alignment explanation
Indices: 15032491--15032695 Score: 279
Period size: 41 Copynumber: 5.0 Consensus size: 41
15032481 AGGAGTTATA
* *
15032491 TGACTTTTAGTGGCGTTTTACTAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* *
15032532 TGACTTTTAGTGGCGTTTTACCAGAAGCGCCGCTATTGCTCC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCT-C
* *
15032574 T-ACTTTTAGCGGCGTTTTACCAAAAGAGCGGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * *
15032614 CGACTTTTAGCCGCGTTTTACCAAAAGCGCCACTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * *
15032655 T-ATTTTTAGCGGCGTTTTACCAAAAACGCCGCAATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
15032695 T
1 T
15032696 ATGTTTTACA
Statistics
Matches: 145, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
40 36 0.25
41 107 0.74
42 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.33
Consensus pattern (41 bp):
TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
Found at i:15034442 original size:26 final size:29
Alignment explanation
Indices: 15034382--15034442 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
15034372 TTTTAATTAA
15034382 TTAATTAACTTTTTTAAGAATTCATATATT
1 TTAA-TAACTTTTTTAAGAATTCATATATT
*
15034412 ATAATAA-TTTTTTAA-ATATTC-TAT-TT
1 TTAATAACTTTTTTAAGA-ATTCATATATT
15034438 TTAAT
1 TTAAT
15034443 TACTATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
26 6 0.21
27 4 0.14
28 12 0.43
29 3 0.11
30 3 0.11
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (29 bp):
TTAATAACTTTTTTAAGAATTCATATATT
Found at i:15034926 original size:50 final size:50
Alignment explanation
Indices: 15034831--15034926 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
15034821 GAAATGATAT
* *
15034831 AAGTAGAATCCGTATAGAACTACTCTTCTTCTATTTGATATTGATTGTAC
1 AAGTAGAATCCGTATAGAACTACTCTCCTTCTATTTGATACTGATTGTAC
* * *
15034881 AAGTAGAATCTGTATAGAACTTCTCTCCTTCTATTTGATGCTGATT
1 AAGTAGAATCCGTATAGAACTACTCTCCTTCTATTTGATACTGATT
15034927 AGAATAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (50 bp):
AAGTAGAATCCGTATAGAACTACTCTCCTTCTATTTGATACTGATTGTAC
Found at i:15037991 original size:37 final size:37
Alignment explanation
Indices: 15037950--15038039 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 37
15037940 GGATTACAGA
15037950 GATATGAGATTAAGACC-ATGTCTGGGACATTGGCATC
1 GATATGAGATTAAG-CCTATGTCTGGGACATTGGCATC
15037987 GATATGAGATTTGTGTAAGCCTATGTCTGGGACATTGGCATC
1 GATATGAGA----T-TAAGCCTATGTCTGGGACATTGGCATC
*
15038029 GATATAAGATT
1 GATATGAGATT
15038040 CATGTACAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
37 10 0.22
38 1 0.02
41 3 0.07
42 32 0.70
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (37 bp):
GATATGAGATTAAGCCTATGTCTGGGACATTGGCATC
Found at i:15038059 original size:42 final size:42
Alignment explanation
Indices: 15037967--15038076 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 42
15037957 GATTAAGACC
* ** *
15037967 ATGTCTGGGACATTGGCATCGATATGAGATTTGTGTAAGCCT
1 ATGTCTGGGACATTGGCATCGATATAAGATTCATGTAAACCT
15038009 ATGTCTGGGACATTGGCATCGATATAAGATTCATGTACAACC-
1 ATGTCTGGGACATTGGCATCGATATAAGATTCATGTA-AACCT
15038051 ATAG-CTGGG-CTATTGGCATCGATATA
1 AT-GTCTGGGAC-ATTGGCATCGATATA
15038077 CTATAACATG
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
41 1 0.02
42 56 0.92
43 4 0.07
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
ATGTCTGGGACATTGGCATCGATATAAGATTCATGTAAACCT
Found at i:15038507 original size:2 final size:2
Alignment explanation
Indices: 15038500--15038524 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15038490 TAAATAAAGT
15038500 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15038525 TCGCTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15039087 original size:24 final size:23
Alignment explanation
Indices: 15039060--15039118 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 23
15039050 ATGGTATAGG
15039060 GATGATGAATTAGTATATTTTGAT
1 GATGATGAATTAGTATATTTTG-T
* *
15039084 GATGATGCATTGGTATATTTTGT
1 GATGATGAATTAGTATATTTTGT
*
15039107 GA-CATGAATTAG
1 GATGATGAATTAG
15039119 ATGATAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 7 0.23
23 3 0.10
24 20 0.67
ACGTcount: A:0.31, C:0.03, G:0.24, T:0.42
Consensus pattern (23 bp):
GATGATGAATTAGTATATTTTGT
Found at i:15039353 original size:26 final size:26
Alignment explanation
Indices: 15039320--15039374 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
15039310 ATGTGTTAAA
15039320 TAACATAAAATTATTACAATAGTAAC
1 TAACATAAAATTATTACAATAGTAAC
15039346 TAACATAAAATTATTACAATAGTAAC
1 TAACATAAAATTATTACAATAGTAAC
15039372 TAA
1 TAA
15039375 AAATAGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.31
Consensus pattern (26 bp):
TAACATAAAATTATTACAATAGTAAC
Found at i:15039385 original size:32 final size:29
Alignment explanation
Indices: 15039316--15039394 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 29
15039306 AAACATGTGT
15039316 TAAATAACATAAAATTATTACAATAGTAAC
1 TAAAT-ACATAAAATTATTACAATAGTAAC
15039346 T--A-ACATAAAATTATTACAATAGTAAC
1 TAAATACATAAAATTATTACAATAGTAAC
15039372 TAAAAATAGCATAAAATTATTAC
1 T--AAATA-CATAAAATTATTAC
15039395 CTTTTATTGA
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
26 25 0.58
28 1 0.02
30 2 0.05
31 1 0.02
32 14 0.33
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.30
Consensus pattern (29 bp):
TAAATACATAAAATTATTACAATAGTAAC
Found at i:15054490 original size:24 final size:21
Alignment explanation
Indices: 15054462--15054505 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
15054452 TTTATCAAGA
15054462 TAAATATTAGATTAAAATTAATAT
1 TAAATATT--ATTAAAA-TAATAT
*
15054486 TAAATCTTATTAAAATAATA
1 TAAATATTATTAAAATAATA
15054506 AAATGTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 7 0.37
24 7 0.37
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TAAATATTATTAAAATAATAT
Found at i:15071084 original size:30 final size:30
Alignment explanation
Indices: 15071037--15071111 Score: 132
Period size: 30 Copynumber: 2.5 Consensus size: 30
15071027 ACACTTATTA
*
15071037 TTTTAATAATTTAGTGACTTAAATGATAATG
1 TTTTAA-AATTCAGTGACTTAAATGATAATG
15071068 TTTTAAAATTCAGTGACTTAAATGATAATG
1 TTTTAAAATTCAGTGACTTAAATGATAATG
15071098 TTTTAAAATTCAGT
1 TTTTAAAATTCAGT
15071112 TATCATTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 37 0.86
31 6 0.14
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (30 bp):
TTTTAAAATTCAGTGACTTAAATGATAATG
Found at i:15077935 original size:4 final size:4
Alignment explanation
Indices: 15077919--15077948 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
15077909 ATAATATGAT
*
15077919 ATAC ATGC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
15077949 GAATTATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:15092864 original size:37 final size:39
Alignment explanation
Indices: 15092823--15092910 Score: 110
Period size: 37 Copynumber: 2.3 Consensus size: 39
15092813 ATTGATTTTC
15092823 TTTTTACAAAATTACTGAATATATTA-AAA-TCT-CCAAA
1 TTTTTACAAAATTACTGAATATATTATAAACT-TACCAAA
* * *
15092860 TTTTTATAATATTACTGAATATCTTATAAACTTACCAAA
1 TTTTTACAAAATTACTGAATATATTATAAACTTACCAAA
15092899 TTTCTTACAAAA
1 TTT-TTACAAAA
15092911 CATTGTAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
37 23 0.55
38 4 0.10
39 9 0.21
40 6 0.14
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (39 bp):
TTTTTACAAAATTACTGAATATATTATAAACTTACCAAA
Found at i:15092904 original size:20 final size:20
Alignment explanation
Indices: 15092855--15092905 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
15092845 ATTAAAATCT
15092855 CCAAATTT-TTATAATATTA
1 CCAAATTTCTTATAATATTA
** *
15092874 CTGAATATCTTATAA-ACTTA
1 CCAAATTTCTTATAATA-TTA
15092894 CCAAATTTCTTA
1 CCAAATTTCTTA
15092906 CAAAACATTG
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (20 bp):
CCAAATTTCTTATAATATTA
Found at i:15095185 original size:81 final size:80
Alignment explanation
Indices: 15095046--15095207 Score: 236
Period size: 81 Copynumber: 2.0 Consensus size: 80
15095036 CTTCGAAGCT
* * *
15095046 ACGGAGATCATTTTCGCCTTCCCGATTGGCTAATAGATTGGTTTCACCATTGAAGAGCAGAAAAA
1 ACGGAGATCATTTTCACCTTCCCGATTGGCTAACAGATTGGTGTCACCATTGAAGAGCAGAAAAA
*
15095111 CTTTGCAAAGAAGTG
66 CTTTGCAAAAAAGTG
*
15095126 ACGGTAGATCATTTTCACCTTCCC-ATTTGGCTAGCAGATTGGTGTCACCATTGAAGAGCAGAAA
1 ACGG-AGATCATTTTCACCTTCCCGA-TTGGCTAACAGATTGGTGTCACCATTGAAGAGCAGAAA
**
15095190 AGGTTTGCAAAAAAGTG
64 AACTTTGCAAAAAAGTG
15095207 A
1 A
15095208 TGGTCCAATG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 5 0.07
81 68 0.93
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (80 bp):
ACGGAGATCATTTTCACCTTCCCGATTGGCTAACAGATTGGTGTCACCATTGAAGAGCAGAAAAA
CTTTGCAAAAAAGTG
Found at i:15105401 original size:47 final size:47
Alignment explanation
Indices: 15105292--15105402 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
15105282 CCGGGATAAG
* * * *
15105292 CACATAGTGCTTCATCGGAATAAATTCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
15105339 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
15105386 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
15105403 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:15106165 original size:4 final size:4
Alignment explanation
Indices: 15106156--15106186 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
15106146 CCCTTTTTTA
15106156 TTTC TTTC TTTC TTTC TTTC -TTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
15106187 ACGTTTGCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:15117998 original size:39 final size:39
Alignment explanation
Indices: 15117954--15118028 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
15117944 TCTTTGATGC
15117954 AAAACTGAGTCTAGTATGCTATAATTTGATCTCTCTGTA
1 AAAACTGAGTCTAGTATGCTATAATTTGATCTCTCTGTA
15117993 AAAACTGAGTCTAGTATGCTATAATTTGATCTCTCT
1 AAAACTGAGTCTAGTATGCTATAATTTGATCTCTCT
15118029 TTGCTTGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (39 bp):
AAAACTGAGTCTAGTATGCTATAATTTGATCTCTCTGTA
Found at i:15120738 original size:13 final size:12
Alignment explanation
Indices: 15120715--15120777 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
15120705 AATAATTTTA
15120715 TATTAAAATTAT
1 TATTAAAATTAT
15120727 TATT-AAA-TAT
1 TATTAAAATTAT
15120737 TATTAATAATTA-
1 TATTAA-AATTAT
*
15120749 TATTAATAA-TGT
1 TATTAA-AATTAT
15120761 TATT-AAATTAT
1 TATTAAAATTAT
15120772 ATATTA
1 -TATTA
15120778 TTTTATTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
10 9 0.21
11 8 0.19
12 23 0.55
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:15120742 original size:22 final size:23
Alignment explanation
Indices: 15120715--15120778 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
15120705 AATAATTTTA
15120715 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTATAATAT
*
15120737 TATTAATAATTA-TATTAATAATGT
1 TATTAA-AATTATTATT-ATAATAT
15120761 TATT-AAATTATATATTAT
1 TATTAAAATTAT-TATTAT
15120779 TTTATTAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.42
23 9 0.25
24 12 0.33
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TATTAAAATTATTATTATAATAT
Found at i:15120891 original size:25 final size:26
Alignment explanation
Indices: 15120841--15120891 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15120831 ATTTTTATTT
*
15120841 TTATTAAAATATATTGAACAATAATC
1 TTATTAAAATATAATGAACAATAATC
*
15120867 TTATTAAAATTTAAT-AACAATAATC
1 TTATTAAAATATAATGAACAATAATC
15120892 ATCTATCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (26 bp):
TTATTAAAATATAATGAACAATAATC
Found at i:15121015 original size:44 final size:46
Alignment explanation
Indices: 15120964--15121052 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 46
15120954 TACAACATCT
15120964 ATTCCATTCAACCAAACACA-AGAATT-CT-ATTACAGCTCTATTCA
1 ATTCCATTCAACCAAACA-ATAGAATTACTGATTACAGCTCTATTCA
*
15121008 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGCTCTATTC
1 ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTC
15121053 CATTACAACT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 2 0.05
46 15 0.37
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCA
Found at i:15121059 original size:16 final size:16
Alignment explanation
Indices: 15121038--15121108 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
15121028 TGAATTACTG
15121038 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
15121054 ATTACAACTATATTCC
1 ATTACAGCTCTATTCC
* *
15121070 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
*
15121086 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
15121102 ATTACAG
1 ATTACAG
15121109 TGAACCAAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:15124540 original size:11 final size:11
Alignment explanation
Indices: 15124495--15124543 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
15124485 ATTCCCAAAC
* *
15124495 AATAATAATAG
1 AATAATAGTAA
15124506 AATAATAGTAA
1 AATAATAGTAA
*
15124517 TATAATAGTAA
1 AATAATAGTAA
*
15124528 AATAATAGCAA
1 AATAATAGTAA
15124539 AATAA
1 AATAA
15124544 CATCAAAACA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (11 bp):
AATAATAGTAA
Found at i:15129463 original size:9 final size:9
Alignment explanation
Indices: 15129449--15129519 Score: 54
Period size: 9 Copynumber: 7.7 Consensus size: 9
15129439 AAATTTACAC
15129449 TTTTTTATA
1 TTTTTTATA
*
15129458 TTTTTTACA
1 TTTTTTATA
* *
15129467 ATTTTTATC
1 TTTTTTATA
15129476 TATTTTTATA
1 T-TTTTTATA
*
15129486 ATTTTTATTA
1 TTTTTTA-TA
*
15129496 ATTTTTAT-
1 TTTTTTATA
*
15129504 TTTTTATAAA
1 TTTTT-TATA
15129514 TTTTTT
1 TTTTTT
15129520 TGCCACATGT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
8 4 0.08
9 24 0.49
10 21 0.43
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTTTATA
Found at i:15129464 original size:19 final size:20
Alignment explanation
Indices: 15129442--15129519 Score: 67
Period size: 19 Copynumber: 4.2 Consensus size: 20
15129432 TTTATAAAAA
*
15129442 TTTACACTTTTT-TATATTT
1 TTTACAATTTTTATATATTT
*
15129461 TTTACAATTTTTATCTA-TT
1 TTTACAATTTTTATATATTT
* *
15129480 TTTATAATTTTTAT-TAATT
1 TTTACAATTTTTATATATTT
* *
15129499 TTT--ATTTTTTATAAATTT
1 TTTACAATTTTTATATATTT
15129517 TTT
1 TTT
15129520 TGCCACATGT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
17 8 0.16
18 8 0.16
19 31 0.62
20 3 0.06
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTACAATTTTTATATATTT
Found at i:15129517 original size:10 final size:9
Alignment explanation
Indices: 15129450--15129518 Score: 70
Period size: 10 Copynumber: 7.6 Consensus size: 9
15129440 AATTTACACT
*
15129450 TTTTTATAT
1 TTTTTATAA
*
15129459 TTTTTACAA
1 TTTTTATAA
*
15129468 TTTTTATCTA
1 TTTTTAT-AA
15129478 TTTTTATAA
1 TTTTTATAA
15129487 TTTTTATTAA
1 TTTTTA-TAA
15129497 TTTTTAT--
1 TTTTTATAA
15129504 TTTTTATAAA
1 TTTTTAT-AA
15129514 TTTTT
1 TTTTT
15129519 TTGCCACATG
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
7 7 0.14
9 21 0.42
10 22 0.44
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTATAA
Found at i:15129817 original size:94 final size:90
Alignment explanation
Indices: 15129650--15129831 Score: 213
Period size: 94 Copynumber: 2.0 Consensus size: 90
15129640 GTTTATTTTG
* *** * * *
15129650 TTTGAAAAAGTTTAAGGGTTTTTTTATGCATTTTGGTAGTTCAAGTACCTAATTGAGTATAAAAA
1 TTTGAAAAAGTTTAAGGATTTTTTTATGCATTTTAAAAGTTCAAATACCTAATTGAATACAAAAA
*
15129715 AAGGTAGGACTTAATTGCTTTTTTATT
66 AAGATAGGACTTAATT--TTTTTTATT
* * *
15129742 TTTGAAAAAGTTTAAGAGCATTTTTTTATGCATTTTAAAAGTTTAAATACTTAATTTAATACAAA
1 TTTGAAAAAGTTTAAG-G-ATTTTTTTATGCATTTTAAAAGTTCAAATACCTAATTGAATACAAA
15129807 TAAAA-ATAGGACTTAATTTTTTTTA
64 -AAAAGATAGGACTTAATTTTTTTTA
15129832 AATTAAAGAT
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
92 23 0.30
93 1 0.01
94 48 0.63
95 4 0.05
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (90 bp):
TTTGAAAAAGTTTAAGGATTTTTTTATGCATTTTAAAAGTTCAAATACCTAATTGAATACAAAAA
AAGATAGGACTTAATTTTTTTTATT
Found at i:15130528 original size:26 final size:26
Alignment explanation
Indices: 15130478--15130528 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15130468 TTTTATATAA
*
15130478 AAATAAATTTAAAAACATAATATATT
1 AAATAAATTTAAAAACATAAAATATT
*
15130504 AAATAAA-TTAAAAATATTAAAATAT
1 AAATAAATTTAAAAACA-TAAAATAT
15130529 ATGATTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
AAATAAATTTAAAAACATAAAATATT
Found at i:15142980 original size:3 final size:3
Alignment explanation
Indices: 15142972--15143006 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
15142962 AATTCCCATC
* *
15142972 CAT CAT CAT CAT CAT CAG CAT CAT CAT CAG CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
15143007 ACACTAGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.34, G:0.06, T:0.26
Consensus pattern (3 bp):
CAT
Found at i:15142993 original size:12 final size:12
Alignment explanation
Indices: 15142972--15143006 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
15142962 AATTCCCATC
*
15142972 CATCATCATCAT
1 CATCAGCATCAT
15142984 CATCAGCATCAT
1 CATCAGCATCAT
15142996 CATCAGCATCA
1 CATCAGCATCA
15143007 ACACTAGTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.34, G:0.06, T:0.26
Consensus pattern (12 bp):
CATCAGCATCAT
Found at i:15144996 original size:5 final size:5
Alignment explanation
Indices: 15144988--15145018 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
15144978 TTATTTTATT
15144988 TATAA TATAA TATAA TATAA TATAA TTATAA
1 TATAA TATAA TATAA TATAA TATAA -TATAA
15145019 AGATTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:15145151 original size:15 final size:16
Alignment explanation
Indices: 15145126--15145157 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15145116 CTCTTTCCCT
15145126 AATATTCTATCAAATA
1 AATATTCTATCAAATA
15145142 AATA-TCTATCAAATA
1 AATATTCTATCAAATA
15145157 A
1 A
15145158 GAAATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
AATATTCTATCAAATA
Found at i:15145255 original size:2 final size:2
Alignment explanation
Indices: 15145248--15145276 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15145238 TGTTTGCTTA
15145248 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15145277 CATGCAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15147686 original size:9 final size:9
Alignment explanation
Indices: 15147672--15147757 Score: 111
Period size: 9 Copynumber: 9.6 Consensus size: 9
15147662 ATAAGTATAA
15147672 AATTAACCG
1 AATTAACCG
15147681 AATTAACCG
1 AATTAACCG
15147690 AATTAACCG
1 AATTAACCG
*
15147699 AATTAATCG
1 AATTAACCG
15147708 AATTAACCG
1 AATTAACCG
15147717 AATT-ACACG
1 AATTAAC-CG
* *
15147726 AATTACCCA
1 AATTAACCG
*
15147735 AATTAATCG
1 AATTAACCG
*
15147744 AATTAACAG
1 AATTAACCG
15147753 AATTA
1 AATTA
15147758 TTTGTATAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
8 2 0.03
9 63 0.95
10 1 0.02
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:15147791 original size:5 final size:6
Alignment explanation
Indices: 15147776--15147816 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
15147766 AAATTATATT
*
15147776 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
15147817 AAATTATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:15147852 original size:13 final size:13
Alignment explanation
Indices: 15147836--15147862 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15147826 GTAATTTTTA
15147836 TGATTGGGTTGGG
1 TGATTGGGTTGGG
15147849 TGATTGGGTTGGG
1 TGATTGGGTTGGG
15147862 T
1 T
15147863 TGAGTACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.52, T:0.41
Consensus pattern (13 bp):
TGATTGGGTTGGG
Found at i:15155043 original size:19 final size:19
Alignment explanation
Indices: 15155019--15155056 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15155009 TGAAAAAGAG
*
15155019 TTACATTGAAACATCAAAC
1 TTACATCGAAACATCAAAC
15155038 TTACATCGAAACATCAAAC
1 TTACATCGAAACATCAAAC
15155057 AACATACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.24, G:0.05, T:0.24
Consensus pattern (19 bp):
TTACATCGAAACATCAAAC
Found at i:15155318 original size:136 final size:136
Alignment explanation
Indices: 15155074--15155347 Score: 467
Period size: 136 Copynumber: 2.0 Consensus size: 136
15155064 ATACCCTAGG
* * *
15155074 ATAGAGGTGTAGAGCCAAAGAAATGCACAAACACCTGAAGCAAGACCAATCCTTGTCTCAGGGAA
1 ATAGAGGTGTAGAGCCAAAGAAATGCACAAACACCTGAAGCAAGACAAATCATTGTCTCAAGGAA
* *
15155139 ACTTTGCTCATCAACTAGAGAAGTAATAGATTTAACAGTTTCCAATGAGCATAATATAGGTGTCG
66 ACTTTGCTCATCAACTAGAGAAGCAATAGATTTAACAGTTTCCAATGAGCATAATATAGGTATCG
15155204 AAGAAA
131 AAGAAA
*
15155210 ATAGAGGTGTAGAGCCAAAGAAATGCACAAACACCTGAATCAAGACAAATCATTGTCTCAAGGAA
1 ATAGAGGTGTAGAGCCAAAGAAATGCACAAACACCTGAAGCAAGACAAATCATTGTCTCAAGGAA
* * *
15155275 ACTTTGCTCATCAACTAGAGCAGCAATCGATTTAATAGTTTCCAATGAGCATAATATAGGTATCG
66 ACTTTGCTCATCAACTAGAGAAGCAATAGATTTAACAGTTTCCAATGAGCATAATATAGGTATCG
15155340 AAGAAA
131 AAGAAA
15155346 AT
1 AT
15155348 GGAGAACCCA
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 129 1.00
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.23
Consensus pattern (136 bp):
ATAGAGGTGTAGAGCCAAAGAAATGCACAAACACCTGAAGCAAGACAAATCATTGTCTCAAGGAA
ACTTTGCTCATCAACTAGAGAAGCAATAGATTTAACAGTTTCCAATGAGCATAATATAGGTATCG
AAGAAA
Found at i:15164512 original size:46 final size:46
Alignment explanation
Indices: 15164462--15164629 Score: 209
Period size: 46 Copynumber: 3.6 Consensus size: 46
15164452 TGGTTGAGCA
15164462 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15164508 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
15164553 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
15164601 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
15164630 GTTATGGGCG
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.54
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15164618 original size:93 final size:93
Alignment explanation
Indices: 15164459--15164631 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
15164449 GGATGGTTGA
* *
15164459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15164524 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
15164552 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15164617 TGAGTCCGAGTTCGT
66 TGAGTCCGAGTTCGT
15164632 TATGGGCGGG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15178511 original size:46 final size:46
Alignment explanation
Indices: 15178461--15178628 Score: 209
Period size: 46 Copynumber: 3.6 Consensus size: 46
15178451 TGGTTGAGCA
15178461 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15178507 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
15178552 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
15178600 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
15178629 GTTATGGGCG
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.54
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15178617 original size:93 final size:93
Alignment explanation
Indices: 15178458--15178630 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
15178448 GGATGGTTGA
* *
15178458 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15178523 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
15178551 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15178616 TGAGTCCGAGTTCGT
66 TGAGTCCGAGTTCGT
15178631 TATGGGCGGG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15180864 original size:48 final size:47
Alignment explanation
Indices: 15180812--15181034 Score: 185
Period size: 48 Copynumber: 4.6 Consensus size: 47
15180802 TACAACAGCT
* *
15180812 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCTG-GACATGGCATCGGCATCAATATGAGAGCC
* * * ** ** *** * *
15180860 AGTGTAAAACCATATTTGGAACATAACATTAGCATTGTTAAGAGAGCT
1 AGTGTAAGACCATGTCTGG-ACATGGCATCGGCATCAATATGAGAGCC
* *
15180908 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCT-GGACATGGCATCGGCATCAATATGAGAGCC
* * * * * * *
15180956 AGTGTAAGACCATGTTTGGTACATGGCATTGACATTATTACGAGAGCT
1 AGTGTAAGACCATGTCTGG-ACATGGCATCGGCATCAATATGAGAGCC
15181004 AGTGTAAGACCATTGTCTGGGACATGGCATC
1 AGTGTAAGACCA-TGTCT-GGACATGGCATC
15181035 AACATCTTAC
Statistics
Matches: 131, Mismatches: 39, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
47 3 0.02
48 111 0.85
49 15 0.11
50 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGACATGGCATCGGCATCAATATGAGAGCC
Found at i:15180917 original size:96 final size:95
Alignment explanation
Indices: 15180753--15181034 Score: 395
Period size: 96 Copynumber: 2.9 Consensus size: 95
15180743 ACGCTGGGGT
* * * * *
15180753 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACGTAACATCGGGACTGTTACA-ACAGCTAGTGT
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAACAT-TGCATTGTTA-AGAGAGCTAGTGT
*
15180817 AAGACCATGTCTGAGACATGGCATCGGCCTCA
64 AAGACCATGTCTGGGACATGGCATCGGCCTCA
* *
15180849 ATATGTGAGCCAGTGTAAAACCATATTTGGAACATAACATTAGCATTGTTAAGAGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAACATT-GCATTGTTAAGAGAGCTAGTGTA
15180914 AGACCATGTCTGGGACATGGCATCGGCCTCA
65 AGACCATGTCTGGGACATGGCATCGGCCTCA
* ** * *
15180945 ATATGTGAGCCAGTGTAAGACCATGTTTGGTACATGGCATTGACATTATTACGAGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAACATTG-CATTGTTAAGAGAGCTAGTGTA
15181010 AGACCATTGTCTGGGACATGGCATC
65 AGACCA-TGTCTGGGACATGGCATC
15181035 AACATCTTAC
Statistics
Matches: 167, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
95 2 0.01
96 147 0.88
97 18 0.11
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAACATTGCATTGTTAAGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCA
Found at i:15183187 original size:17 final size:17
Alignment explanation
Indices: 15183167--15183201 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15183157 TATATACATA
15183167 CATTTATCTTATTT-TAT
1 CATTTATC-TATTTATAT
15183184 CATTTATCTATTTATAT
1 CATTTATCTATTTATAT
15183201 C
1 C
15183202 CTTTTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (17 bp):
CATTTATCTATTTATAT
Found at i:15183264 original size:12 final size:11
Alignment explanation
Indices: 15183236--15183271 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
15183226 GTTTATTTAT
*
15183236 TTATTTTATTA
1 TTATATTATTA
15183247 TTATATTATTA
1 TTATATTATTA
15183258 TTAATATTATTA
1 TT-ATATTATTA
15183270 TT
1 TT
15183272 CTTAAATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATATTATTA
Found at i:15183358 original size:16 final size:15
Alignment explanation
Indices: 15183337--15183367 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
15183327 CAAATTTTTA
15183337 ATTTGTTATTCTTATT
1 ATTTGTTATT-TTATT
15183353 ATTTGTTATTTTATT
1 ATTTGTTATTTTATT
15183368 TCTAGCTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.71
Consensus pattern (15 bp):
ATTTGTTATTTTATT
Found at i:15205572 original size:42 final size:42
Alignment explanation
Indices: 15205511--15205672 Score: 164
Period size: 42 Copynumber: 3.8 Consensus size: 42
15205501 TAGGGTTATG
*
15205511 TGTGATTTCTTGTAAGACCATATCTAGGATATGGCATCAATA
1 TGTGATTTCATGTAAGACCATATCTAGGATATGGCATCAATA
* * * *
15205553 TTTGATTTCGTGTAAGACCATGTCTAGGACATGGCATCAATA
1 TGTGATTTCATGTAAGACCATATCTAGGATATGGCATCAATA
* * * * *
15205595 CGAGATATCATGTAAGACCATAGT-TGGGCTATCGGCATCGATATA
1 TGTGATTTCATGTAAGACCATA-TCTAGGATAT-GGCATC-A-ATA
** *
15205640 TGTGATCCCATGTAAGACCATATCTGGGATATG
1 TGTGATTTCATGTAAGACCATATCTAGGATATG
15205673 ACATTGACGT
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
42 59 0.61
43 7 0.07
44 3 0.03
45 28 0.29
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTAGGATATGGCATCAATA
Found at i:15206680 original size:42 final size:42
Alignment explanation
Indices: 15206619--15206731 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
15206609 TCGTTTTCTC
** * *
15206619 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
* *
15206661 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
15206703 GATGCCATAGCCCAGCTATGGTCTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
15206732 GAATCATATA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
Found at i:15206769 original size:46 final size:47
Alignment explanation
Indices: 15206660--15206821 Score: 156
Period size: 47 Copynumber: 3.6 Consensus size: 47
15206650 CTTCACATAA
* * * **
15206660 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAT-----
1 TGATGCCATATCCCAGATATGGTCTTACACAGAAGCATATATCACAC
* * * *
15206702 TGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCATATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGAAGCATATATCACAC
* * *
15206748 TGATGCCATATCCCAAATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGAAGCATATATCACAC
* *
15206795 CGATGCCATATCTCAGATATGGTCTTA
1 TGATGCCATATCCCAGATATGGTCTTA
15206822 TACGGAAATC
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 9 0.09
42 30 0.29
46 26 0.25
47 37 0.36
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGAAGCATATATCACAC
Found at i:15206886 original size:31 final size:31
Alignment explanation
Indices: 15206843--15207022 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
15206833 CTTGTCACTT
* *
15206843 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
15206874 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
15206905 GTAGCCGGAGCTACCAATTTTCATTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
15206936 GTAGCCAGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
15206967 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
15206998 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
15207023 TGTCATTTGT
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 136 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:15207103 original size:50 final size:50
Alignment explanation
Indices: 15206998--15207174 Score: 275
Period size: 50 Copynumber: 3.5 Consensus size: 50
15206988 CACTGATCAG
* * * *
15206998 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCCTGATCAGATAGGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
15207049 GTAGCAGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
15207099 GTAGCCGAAGCTA-CTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATC-ACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
15207149 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
15207175 ATTGCCATGG
Statistics
Matches: 116, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
49 1 0.01
50 91 0.78
51 24 0.21
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:15219696 original size:14 final size:14
Alignment explanation
Indices: 15219677--15219720 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
15219667 CTTTCATTAC
15219677 TTGATTTTTCATAA
1 TTGATTTTTCATAA
*
15219691 TTGATTTTTCAATAT
1 TTGATTTTTC-ATAA
*
15219706 TTAATTTTTCA-AA
1 TTGATTTTTCATAA
15219719 TT
1 TT
15219721 ACCAAAACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 3 0.12
14 11 0.42
15 12 0.46
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.59
Consensus pattern (14 bp):
TTGATTTTTCATAA
Done.