Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 65 of 427
Found at i:15957529 original size:21 final size:21
Alignment explanation
Indices: 15957414--15957521 Score: 94
Period size: 22 Copynumber: 5.1 Consensus size: 21
15957404 TATGGGTTAA
* *
15957414 GGGTTAGGGTTTAAGTTTTAG
1 GGGTTAGGGGTTAAGGTTTAG
15957435 AGGGTT-GGGGTTTAAGGTTTAG
1 -GGGTTAGGGG-TTAAGGTTTAG
** *
15957457 GGGTTAAAGGTTAAGTGTTTAT
1 GGGTTAGGGGTTAAG-GTTTAG
** * *
15957479 GTTTTATGGTTTAAGGTTTAG
1 GGGTTAGGGGTTAAGGTTTAG
15957500 GGGTTAGGGGTTAAGG-TTAG
1 GGGTTAGGGGTTAAGGTTTAG
15957520 GG
1 GG
15957522 ATTTAGGGTT
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
20 6 0.09
21 30 0.44
22 32 0.47
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (21 bp):
GGGTTAGGGGTTAAGGTTTAG
Found at i:15965359 original size:18 final size:19
Alignment explanation
Indices: 15965321--15965361 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
15965311 TGGTTCATGT
15965321 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
15965340 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
15965358 TTTC
1 TTTC
15965362 TCATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:15965551 original size:39 final size:40
Alignment explanation
Indices: 15965508--15965619 Score: 102
Period size: 38 Copynumber: 2.8 Consensus size: 40
15965498 TCGGATAGTT
* *
15965508 CGAAGCAATATTTGACACCCAGTGTCTCATCG-GCCTAGC
1 CGAAGAAATATTTGACACCCAGTGTCTCATCGAACCTAGC
* * ** ** * *
15965547 CGAAGTAA-AGTTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGAAATATTTGACACCCAGTGTCTCATCGAACCTAGC
*
15965586 CGAAGAAATATAGTGACACCCAGTGTCTCATCGA
1 CGAAGAAATAT-TTGACACCCAGTGTCTCATCGA
15965620 CTCGAGGTCG
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
38 18 0.33
39 18 0.33
40 1 0.02
41 17 0.31
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CGAAGAAATATTTGACACCCAGTGTCTCATCGAACCTAGC
Found at i:15965884 original size:18 final size:19
Alignment explanation
Indices: 15965858--15965896 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
15965848 TTTCAATTCA
15965858 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
15965877 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
15965895 AT
1 AT
15965897 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:15967204 original size:5 final size:5
Alignment explanation
Indices: 15967194--15967250 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
15967184 TTATGTTTAT
15967194 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
15967244 ATATA AT
1 ATATA AT
15967251 TAAAACATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:15970094 original size:16 final size:17
Alignment explanation
Indices: 15970062--15970093 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
15970052 TATAATATAG
15970062 AAAATAAATATTATTTT
1 AAAATAAATATTATTTT
15970079 AAAA-AAATA-TATTTT
1 AAAATAAATATTATTTT
15970094 TTTAAAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATAAATATTATTTT
Found at i:15970224 original size:43 final size:43
Alignment explanation
Indices: 15970108--15970336 Score: 253
Period size: 43 Copynumber: 5.3 Consensus size: 43
15970098 AAGGTTATAT
* * * * *
15970108 TCTTTAGCAGCGTTTGTGAGAAAAGCGCCGCTAAAGGT-TTGT
1 TCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGG
* * *
15970150 TCTGTAGCAGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGG
* ** * * *
15970193 TTTTTAGTTGCGTTTGCGGAAAAAGCTCCGCTAAAGGTTATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGG
* ** * **
15970236 TCTGTAGCGGCGTTTGCGGGAAATGCGTAGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGG
* *
15970279 TCTTTAGCGGCGTTTGTGAAAAAAGCGCCTCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGG
15970322 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
15970337 TTTTAAATAA
Statistics
Matches: 156, Mismatches: 30, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 36 0.23
43 120 0.77
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGG
Found at i:15970328 original size:129 final size:128
Alignment explanation
Indices: 15970096--15970328 Score: 322
Period size: 129 Copynumber: 1.8 Consensus size: 128
15970086 TATATTTTTT
* * * * * *
15970096 TAAAGGTTATATTCTTTAGCAGCGTTTGTGAGAAAAGCGCCGCTAAAGGTTTGTTCTGTAGCAGC
1 TAAAGGTTATAGTCTGTAGCAGCGTTTGCGAGAAAAGCGCAGCTAAAGGTATGGTCTGTAGCAGC
*
15970161 GTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTTTTTAGTTGCGTTTGCGGAAAAAGCTCCGC
66 GTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGTTGCGTTTGCGGAAAAAGCTCCGC
* * * * * * *
15970224 TAAAGGTTATGGTCTGTAGCGGCGTTTGCGGGAAATGCGTAGCTAAAGGTCATGGTCTTTAGCGG
1 TAAAGGTTATAGTCTGTAGCAGCGTTTGCGAGAAAAGCGCAGCTAAAGGT-ATGGTCTGTAGCAG
*
15970289 CGTTTGTGAAAAAAGCGCCTCTAAAGGTCATGGTCTTTAG
65 CGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAG
15970329 CGGCGTTTTT
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
128 41 0.46
129 48 0.54
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (128 bp):
TAAAGGTTATAGTCTGTAGCAGCGTTTGCGAGAAAAGCGCAGCTAAAGGTATGGTCTGTAGCAGC
GTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGTTGCGTTTGCGGAAAAAGCTCCGC
Found at i:15972749 original size:28 final size:28
Alignment explanation
Indices: 15972696--15972750 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
15972686 GACACCCACA
*
15972696 TGGCCAACCTCCTCATTTATTGAACAAT
1 TGGCCAACCTCCTCAGTTATTGAACAAT
* *
15972724 TGGCCAACCTCCTCAGTTGTTTAACAA
1 TGGCCAACCTCCTCAGTTATTGAACAA
15972751 GGTATTAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (28 bp):
TGGCCAACCTCCTCAGTTATTGAACAAT
Found at i:15976068 original size:46 final size:46
Alignment explanation
Indices: 15976001--15976171 Score: 254
Period size: 46 Copynumber: 3.7 Consensus size: 46
15975991 TGGCAACCTG
*
15976001 TGTGTAAGACCATGGTTGAAAGTTACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
15976047 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
15976093 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
15976139 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
15976172 TCACGTCAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 114 0.99
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:15985832 original size:27 final size:26
Alignment explanation
Indices: 15985796--15985880 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
15985786 CGTAGCAAGA
15985796 TTGAGTGGGTCT-GAGGACCCTTGAGT
1 TTGAGTGGGT-TAGAGGACCCTTGAGT
* *
15985822 TTGAGATGGGTTAGAGGTCTCTTGAGT
1 TTGAG-TGGGTTAGAGGACCCTTGAGT
** * * *
15985849 TTGAGTTAGTTGGAGGACCTTTGAAT
1 TTGAGTGGGTTAGAGGACCCTTGAGT
15985875 TTGAGT
1 TTGAGT
15985881 TGGTCGGAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
26 26 0.54
27 22 0.46
ACGTcount: A:0.19, C:0.09, G:0.35, T:0.36
Consensus pattern (26 bp):
TTGAGTGGGTTAGAGGACCCTTGAGT
Found at i:15985881 original size:26 final size:26
Alignment explanation
Indices: 15985843--15985892 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15985833 TAGAGGTCTC
* *
15985843 TTGAGTTTGAGTTAGTTGGAGGACCT
1 TTGAATTTGAGTTAGTCGGAGGACCT
*
15985869 TTGAATTTGAGTTGGTCGGAGGAC
1 TTGAATTTGAGTTAGTCGGAGGAC
15985893 TATGAGCGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.08, G:0.36, T:0.36
Consensus pattern (26 bp):
TTGAATTTGAGTTAGTCGGAGGACCT
Found at i:15992767 original size:3 final size:3
Alignment explanation
Indices: 15992745--15992983 Score: 79
Period size: 3 Copynumber: 82.0 Consensus size: 3
15992735 ATTATAGTAT
* * * * *
15992745 ATA AAA ATA ATA GTA A-A ATA ATA ATA GT- ATA ATA ATA TTTA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * * * *
15992789 AAA AGA ATA ATA AAA ATA GTA ATG GTA ATA ATA ATA ATGT ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * * * * * *
15992835 GTA AGA ATA ATA ATA ATA ATA ATA ATA TTA GTA AAA ACA ATA AGA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
15992882 ATA A-A A-A ATA A-A ATA AGA A-A TGTA ATA GTA ATA TATA ATA ATC
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA
* * * * * * *
15992925 AT- GTA ATA ACA CTA ATA ATA AAA ATT AGA A-G ATA ATA A-A A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15992969 ATGA A-A ATA ATA ATA
1 AT-A ATA ATA ATA ATA
15992984 TTAAAATTAA
Statistics
Matches: 169, Mismatches: 52, Indels: 30
0.67 0.21 0.12
Matches are distributed among these distances:
2 20 0.12
3 139 0.82
4 10 0.06
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:15992978 original size:19 final size:18
Alignment explanation
Indices: 15992938--15992981 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
15992928 TAATAACACT
*
15992938 AATAAT-AAAAATTAGAA
1 AATAATAAAAAATAAGAA
*
15992955 GATAATAAAAAATAATGAA
1 AATAATAAAAAATAA-GAA
15992974 AATAATAA
1 AATAATAA
15992982 TATTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 5 0.23
18 7 0.32
19 10 0.45
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (18 bp):
AATAATAAAAAATAAGAA
Found at i:15999708 original size:3 final size:3
Alignment explanation
Indices: 15999700--15999732 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
15999690 CTATGAAACC
15999700 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15999733 TTCTTAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:16005709 original size:7 final size:7
Alignment explanation
Indices: 16005699--16005731 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
16005689 AAAATTGAAA
16005699 AAAAAAG
1 AAAAAAG
16005706 AAAAAAG
1 AAAAAAG
16005713 AAAAAAG
1 AAAAAAG
16005720 AAAAAAG
1 AAAAAAG
16005727 AAAAA
1 AAAAA
16005732 CTTTAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:16010107 original size:6 final size:6
Alignment explanation
Indices: 16010088--16010151 Score: 56
Period size: 6 Copynumber: 10.2 Consensus size: 6
16010078 CAGATGAAGT
* * * * *
16010088 AAAAGA AAAGGA AAAAGA AACAGAAA CAAAAGA AAAGGT AAAAGA AGAAGA
1 AAAAGA AAAAGA AAAAGA AA-A-AGA -AAAAGA AAAAGA AAAAGA AAAAGA
16010139 AAAAGA AAAAGA A
1 AAAAGA AAAAGA A
16010152 GAGATTGCCA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
6 37 0.82
7 3 0.07
8 3 0.07
9 2 0.04
ACGTcount: A:0.75, C:0.03, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:16017477 original size:22 final size:22
Alignment explanation
Indices: 16017449--16017492 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
16017439 ATGGGTCGAA
16017449 ACTGAAATAAAGGAACTTTGGC
1 ACTGAAATAAAGGAACTTTGGC
16017471 ACTGAAATAAAGGAACTTTGGC
1 ACTGAAATAAAGGAACTTTGGC
16017493 TAAGAAAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.23
Consensus pattern (22 bp):
ACTGAAATAAAGGAACTTTGGC
Found at i:16019486 original size:42 final size:42
Alignment explanation
Indices: 16019411--16019531 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 42
16019401 GTACACAAGT
* * **
16019411 GCTAAACGAAAACCCGTAAGGGTTGAA-TAGAAGCTCGTAAGA
1 GCTAAACGAAAACCCATAAGGGTTAAACT-GAAGCTCAAAAGA
* *
16019453 GCTGAACGGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGA
1 GCTAAACGAAAACCCATAAGGGTTAAACTGAAGCTCAAAAGA
*
16019495 GCTAAACGAAAACCCA-ATAGGGTTAAACTGAAACTCA
1 GCTAAACGAAAACCCATA-AGGGTTAAACTGAAGCTCA
16019532 TACGAGTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 66 0.97
43 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (42 bp):
GCTAAACGAAAACCCATAAGGGTTAAACTGAAGCTCAAAAGA
Found at i:16019528 original size:21 final size:21
Alignment explanation
Indices: 16019461--16019528 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
16019451 GAGCTGAACG
16019461 GAAACCC-ATAAGGGTTAAACT
1 GAAACCCAAT-AGGGTTAAACT
* * * * *
16019482 GAAGCTCAAAAGAGCTAAAC-
1 GAAACCCAATAGGGTTAAACT
16019502 GAAAACCCAATAGGGTTAAACT
1 G-AAACCCAATAGGGTTAAACT
16019524 GAAAC
1 GAAAC
16019529 TCATACGAGT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 1 0.03
21 31 0.91
22 2 0.06
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.15
Consensus pattern (21 bp):
GAAACCCAATAGGGTTAAACT
Found at i:16028893 original size:14 final size:14
Alignment explanation
Indices: 16028860--16028895 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
16028850 ATATGGTAAA
*
16028860 ATATAATATAAATT
1 ATATAATATAAATC
*
16028874 AAATAATATAAATC
1 ATATAATATAAATC
16028888 ATATAATA
1 ATATAATA
16028896 AATAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
ATATAATATAAATC
Found at i:16028898 original size:12 final size:11
Alignment explanation
Indices: 16028859--16028919 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
16028849 AATATGGTAA
16028859 AATATAATATA-
1 AATA-AATATAT
16028870 AATTAAATA-AT
1 AA-TAAATATAT
16028881 -ATAAATCATAT
1 AATAAAT-ATAT
16028892 AATAAATAATAT
1 AATAAAT-ATAT
16028904 AA-AAATATAT
1 AATAAATATAT
16028914 AATAAA
1 AATAAA
16028920 ATGTATATAG
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
9 5 0.12
10 9 0.21
11 15 0.35
12 14 0.33
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAAATATAT
Found at i:16028899 original size:21 final size:21
Alignment explanation
Indices: 16028864--16028919 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 21
16028854 GGTAAAATAT
16028864 AATATA-AATTAAATAATAT-A
1 AATATATAA-TAAATAATATAA
16028884 AATCATATAATAAATAATATAAA
1 AAT-ATATAATAAATAATAT-AA
16028907 AATATATAATAAA
1 AATATATAATAAA
16028920 ATGTATATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.09
21 13 0.41
22 12 0.38
23 4 0.12
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATATAATAAATAATATAA
Found at i:16028912 original size:8 final size:9
Alignment explanation
Indices: 16028859--16028918 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
16028849 AATATGGTAA
16028859 AATATAATAT
1 AATATAA-AT
16028869 AA-ATTAAAT
1 AATA-TAAAT
16028878 AATATAAAT
1 AATATAAAT
16028887 CATATAATAAAT
1 -A-AT-ATAAAT
16028899 AATATAAA-
1 AATATAAAT
16028907 AATATATAAT
1 AATATA-AAT
16028917 AA
1 AA
16028919 AATGTATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
8 6 0.14
9 17 0.40
10 11 0.26
11 3 0.07
12 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
AATATAAAT
Found at i:16028920 original size:12 final size:12
Alignment explanation
Indices: 16028856--16028926 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 12
16028846 GAAAATATGG
16028856 TAAAATATA-ATA
1 TAAAATATATA-A
* *
16028868 TAAATTAAATAA
1 TAAAATATATAA
16028880 TATAAATCATATAA
1 TA-AAAT-ATATAA
16028894 T-AAATA-AT-A
1 TAAAATATATAA
16028903 TAAAAATATATAA
1 T-AAAATATATAA
*
16028916 TAAAATGTATA
1 TAAAATATATA
16028927 TAGTATACAA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
9 2 0.04
10 2 0.04
11 6 0.13
12 25 0.53
13 6 0.13
14 6 0.13
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (12 bp):
TAAAATATATAA
Found at i:16028926 original size:22 final size:23
Alignment explanation
Indices: 16028873--16028919 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
16028863 TAATATAAAT
16028873 TAAATAATAT--AAATCATATAA
1 TAAATAATATAAAAATCATATAA
16028894 TAAATAATATAAAAAT-ATATAA
1 TAAATAATATAAAAATCATATAA
16028916 TAAA
1 TAAA
16028920 ATGTATATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
22 10 0.42
23 4 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAATAATATAAAAATCATATAA
Found at i:16029348 original size:23 final size:22
Alignment explanation
Indices: 16029299--16029354 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
16029289 TAATTAATAA
16029299 AATATAAATAATATATATACCAT
1 AATA-AAATAATATATATACCAT
16029322 -ATAAAATAATATAATAATA-CAT
1 AATAAAATAATAT-AT-ATACCAT
16029344 AATAAAATAAT
1 AATAAAATAAT
16029355 TTTATTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 9 0.30
22 8 0.27
23 13 0.43
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
AATAAAATAATATATATACCAT
Found at i:16030653 original size:16 final size:17
Alignment explanation
Indices: 16030628--16030666 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
16030618 TATTTAGGCA
*
16030628 TTGGGCCTTGTTTAGG-
1 TTGGGTCTTGTTTAGGT
*
16030644 TTGGGTCTTGTTTGGGT
1 TTGGGTCTTGTTTAGGT
16030661 TTGGGT
1 TTGGGT
16030667 GTAACGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.03, C:0.08, G:0.41, T:0.49
Consensus pattern (17 bp):
TTGGGTCTTGTTTAGGT
Found at i:16043443 original size:14 final size:14
Alignment explanation
Indices: 16043410--16043445 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
16043400 ATATGGTAAA
*
16043410 ATATAATATAAATT
1 ATATAATATAAATC
*
16043424 AAATAATATAAATC
1 ATATAATATAAATC
16043438 ATATAATA
1 ATATAATA
16043446 AATAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
ATATAATATAAATC
Found at i:16043448 original size:12 final size:11
Alignment explanation
Indices: 16043409--16043469 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
16043399 AATATGGTAA
16043409 AATATAATATA-
1 AATA-AATATAT
16043420 AATTAAATA-AT
1 AA-TAAATATAT
16043431 -ATAAATCATAT
1 AATAAAT-ATAT
16043442 AATAAATAATAT
1 AATAAAT-ATAT
16043454 AA-AAATATAT
1 AATAAATATAT
16043464 AATAAA
1 AATAAA
16043470 ATGTATATAG
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
9 5 0.12
10 9 0.21
11 15 0.35
12 14 0.33
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAAATATAT
Found at i:16043449 original size:21 final size:21
Alignment explanation
Indices: 16043414--16043469 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 21
16043404 GGTAAAATAT
16043414 AATATA-AATTAAATAATAT-A
1 AATATATAA-TAAATAATATAA
16043434 AATCATATAATAAATAATATAAA
1 AAT-ATATAATAAATAATAT-AA
16043457 AATATATAATAAA
1 AATATATAATAAA
16043470 ATGTATATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.09
21 13 0.41
22 12 0.38
23 4 0.12
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATATAATAAATAATATAA
Found at i:16043462 original size:8 final size:9
Alignment explanation
Indices: 16043409--16043468 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
16043399 AATATGGTAA
16043409 AATATAATAT
1 AATATAA-AT
16043419 AA-ATTAAAT
1 AATA-TAAAT
16043428 AATATAAAT
1 AATATAAAT
16043437 CATATAATAAAT
1 -A-AT-ATAAAT
16043449 AATATAAA-
1 AATATAAAT
16043457 AATATATAAT
1 AATATA-AAT
16043467 AA
1 AA
16043469 AATGTATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
8 6 0.14
9 17 0.40
10 11 0.26
11 3 0.07
12 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
AATATAAAT
Found at i:16043470 original size:12 final size:12
Alignment explanation
Indices: 16043406--16043476 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 12
16043396 GAAAATATGG
16043406 TAAAATATA-ATA
1 TAAAATATATA-A
* *
16043418 TAAATTAAATAA
1 TAAAATATATAA
16043430 TATAAATCATATAA
1 TA-AAAT-ATATAA
16043444 T-AAATA-AT-A
1 TAAAATATATAA
16043453 TAAAAATATATAA
1 T-AAAATATATAA
*
16043466 TAAAATGTATA
1 TAAAATATATA
16043477 TAGTATACAA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
9 2 0.04
10 2 0.04
11 6 0.13
12 25 0.53
13 6 0.13
14 6 0.13
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (12 bp):
TAAAATATATAA
Found at i:16043476 original size:22 final size:23
Alignment explanation
Indices: 16043423--16043469 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
16043413 TAATATAAAT
16043423 TAAATAATAT--AAATCATATAA
1 TAAATAATATAAAAATCATATAA
16043444 TAAATAATATAAAAAT-ATATAA
1 TAAATAATATAAAAATCATATAA
16043466 TAAA
1 TAAA
16043470 ATGTATATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
22 10 0.42
23 4 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAATAATATAAAAATCATATAA
Found at i:16043896 original size:23 final size:22
Alignment explanation
Indices: 16043847--16043902 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
16043837 TAATTAATAA
16043847 AATATAAATAATATATATACCAT
1 AATA-AAATAATATATATACCAT
16043870 -ATAAAATAATATAATAATA-CAT
1 AATAAAATAATAT-AT-ATACCAT
16043892 AATAAAATAAT
1 AATAAAATAAT
16043903 TTTATTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 9 0.30
22 8 0.27
23 13 0.43
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
AATAAAATAATATATATACCAT
Found at i:16045888 original size:26 final size:26
Alignment explanation
Indices: 16045859--16045968 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
16045849 TGATACAAAT
16045859 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
16045885 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16045911 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
16045937 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16045963 TGATAA
1 TGATAA
16045969 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:16047984 original size:135 final size:137
Alignment explanation
Indices: 16047741--16048025 Score: 529
Period size: 135 Copynumber: 2.1 Consensus size: 137
16047731 TGAGTAGTCT
16047741 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
16047806 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCT-GCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
16047870 ACTGTTA
131 ACTGTTA
*
16047877 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
16047941 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
16048006 ACTGTTA
131 ACTGTTA
**
16048013 CCTGAATGGGCTT
1 CCCAAATGGGCTT
16048026 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 97 0.67
136 48 0.33
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:16051821 original size:26 final size:26
Alignment explanation
Indices: 16051782--16051890 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
16051772 TGATACAAAT
*
16051782 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16051808 TGATAATGGATTAGGTAAAT-TTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16051833 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
16051859 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
16051885 TGATAA
1 TGATAA
16051891 GAATTTCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:16051845 original size:51 final size:52
Alignment explanation
Indices: 16051782--16051890 Score: 175
Period size: 51 Copynumber: 2.1 Consensus size: 52
16051772 TGATACAAAT
16051782 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAAT-TTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTCCA
* * * *
16051833 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTCCA
16051885 TGATAA
1 TGATAA
16051891 GAATTTCATG
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 43 0.81
52 10 0.19
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTCCA
Found at i:16053912 original size:135 final size:137
Alignment explanation
Indices: 16053669--16053953 Score: 538
Period size: 135 Copynumber: 2.1 Consensus size: 137
16053659 TGAGTAGTCT
16053669 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
16053734 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCT-GCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
16053798 ACTGTTA
131 ACTGTTA
16053805 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
16053869 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
16053934 ACTGTTA
131 ACTGTTA
**
16053941 CCTGAATGGGCTT
1 CCCAAATGGGCTT
16053954 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 98 0.67
136 48 0.33
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:16057759 original size:26 final size:25
Alignment explanation
Indices: 16057716--16057823 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 25
16057706 TGATACAAAT
16057716 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
16057741 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
16057767 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
16057793 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
16057818 TGATAA
1 TGATAA
16057824 GAATTCATGT
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
25 33 0.42
26 43 0.55
27 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:16059847 original size:136 final size:137
Alignment explanation
Indices: 16059602--16059887 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
16059592 GAGTAGTCTC
16059602 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
16059667 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
16059732 ACTGTTA
131 ACTGTTA
*
16059739 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
16059803 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
16059868 ACTGTTA
131 ACTGTTA
**
16059875 CCTGAATGGGCTT
1 CCCAAATGGGCTT
16059888 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 125 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
ACTGTTA
Found at i:16061332 original size:3 final size:3
Alignment explanation
Indices: 16061324--16061361 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
16061314 GTTTACTACC
16061324 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
16061362 CATCATCATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:16061366 original size:3 final size:3
Alignment explanation
Indices: 16061360--16061392 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
16061350 TATTATTATT
16061360 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
16061393 TTAATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:16067490 original size:14 final size:14
Alignment explanation
Indices: 16067471--16067497 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16067461 ATACTAACTT
16067471 TAGCCCACGGCCAA
1 TAGCCCACGGCCAA
16067485 TAGCCCACGGCCA
1 TAGCCCACGGCCA
16067498 TATGACACGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (14 bp):
TAGCCCACGGCCAA
Found at i:16068347 original size:42 final size:42
Alignment explanation
Indices: 16068270--16068409 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 42
16068260 TCCCGGACTT
* * * *
16068270 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGAAATTCAATA-CGATGCCTATGTCCCAGACAC
* *
16068313 GGTCTTACACGAAATT-AGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATTCA-ATACGATGCCTATGTCCCAGACAC
* * * *
16068355 GGTCTTATATGTAAATCTCAAT-CGAAGCCTGTGTCCCAGACAC
1 GGTCTTACACG-AAAT-TCAATACGATGCCTATGTCCCAGACAC
16068398 GGTCTTACACGA
1 GGTCTTACACGA
16068410 TGTCTCAGAT
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
42 29 0.36
43 47 0.59
44 3 0.04
45 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGAAATTCAATACGATGCCTATGTCCCAGACAC
Found at i:16072084 original size:33 final size:33
Alignment explanation
Indices: 16072037--16072105 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
16072027 TGCATTTCGC
*
16072037 ACTGAACTGATACTGTATAGGGCTCTGGCCCAG
1 ACTGAACTGATACTGAATAGGGCTCTGGCCCAG
* *
16072070 ACTGTACTGATACTGAATAGGGCTTTGGCCCAG
1 ACTGAACTGATACTGAATAGGGCTCTGGCCCAG
16072103 ACT
1 ACT
16072106 ATAGTGATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (33 bp):
ACTGAACTGATACTGAATAGGGCTCTGGCCCAG
Found at i:16072416 original size:17 final size:16
Alignment explanation
Indices: 16072374--16072421 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
16072364 CTAGTCTAGG
16072374 AAAACACGAGTTTTCA
1 AAAACACGAGTTTTCA
16072390 AAATAGCACG-GTTTTCTA
1 AAA-A-CACGAGTTTTC-A
16072408 ACAAACACGAGTTT
1 A-AAACACGAGTTT
16072422 CCAACAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 3 0.11
17 11 0.41
18 11 0.41
19 2 0.07
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (16 bp):
AAAACACGAGTTTTCA
Found at i:16075940 original size:21 final size:23
Alignment explanation
Indices: 16075900--16075941 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
16075890 ACAATTCGCA
*
16075900 TCTCATTTCATCATTTCATTTTT
1 TCTCATCTCATCATTTCATTTTT
16075923 TCTCATCTCA-CA-TTCATTT
1 TCTCATCTCATCATTTCATTT
16075942 CTCATCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (23 bp):
TCTCATCTCATCATTTCATTTTT
Found at i:16078422 original size:43 final size:43
Alignment explanation
Indices: 16078298--16078455 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
16078288 CAAAGCCATA
* * * *
16078298 TCCCAGATATGGTCTTACA-AGTTATCAC-ATATCAATGCCACTG
1 TCCCAGACATGGTCTTACACA-TAATCACAATA-CAATGCTAATG
* * * * *
16078341 TCCCAAACAGGGTCTTACACGA-AATC-GATTAACGATGCTAATG
1 TCCCAGACATGGTCTTACAC-ATAATCACAAT-ACAATGCTAATG
16078384 TCCCAGACATGGTCTTACACATAATCACAATACAATGCTAATG
1 TCCCAGACATGGTCTTACACATAATCACAATACAATGCTAATG
* **
16078427 TCTCAGACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACATAATCACA
16078456 TCTCGGTAAC
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 87 0.95
44 3 0.03
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACATAATCACAATACAATGCTAATG
Found at i:16081840 original size:45 final size:45
Alignment explanation
Indices: 16081776--16081905 Score: 174
Period size: 45 Copynumber: 2.9 Consensus size: 45
16081766 GTTGTACAAT
* *
16081776 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* * * *
16081821 ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
16081866 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
16081906 ATAAATTCGG
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
43 11 0.15
44 14 0.19
45 50 0.67
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:16084818 original size:43 final size:42
Alignment explanation
Indices: 16084752--16084866 Score: 167
Period size: 43 Copynumber: 2.7 Consensus size: 42
16084742 GTTATTGATA
* *
16084752 TGTGATTACATATAAGACCCTGTGTGGGATAGTGGCATTGTAT
1 TGTGATTACATGTAAGA-CCTGTGTGGGATAGTGGCATTATAT
*
16084795 TGTGATTACATGTAAGACGCTGTGTGGAATAGTGGCATTATAT
1 TGTGATTACATGTAAGAC-CTGTGTGGGATAGTGGCATTATAT
*
16084838 TGTGATTACGTGTAAGACCATGTGTGGGA
1 TGTGATTACATGTAAGACC-TGTGTGGGA
16084867 CATCGGAATC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
42 2 0.03
43 63 0.97
ACGTcount: A:0.26, C:0.10, G:0.30, T:0.34
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCTGTGTGGGATAGTGGCATTATAT
Found at i:16084938 original size:43 final size:43
Alignment explanation
Indices: 16084748--16084942 Score: 150
Period size: 43 Copynumber: 4.5 Consensus size: 43
16084738 TTAGGTTATT
* * * *
16084748 GATATGTGATTACATATAAGACCCTGTGTGGGATAGTGGCATT
1 GATATGTGATTACATGTAAGACCCTGTGTGGAACAGTGGCATC
* *
16084791 G-TATTGTGATTACATGTAAGACGCTGTGTGGAATAGTGGCAT-
1 GATA-TGTGATTACATGTAAGACCCTGTGTGGAACAGTGGCATC
* * * * *
16084833 TATATTGTGATTACGTGTAAGACCATGTGTGGGACA-TCGGAATC
1 GATA-TGTGATTACATGTAAGACCCTGTGTGGAACAGT-GGCATC
* ** *
16084877 -ACTAAT-CGACTT-TGTGTAAGACCCTGTATGGAACAGTGGCATC
1 GA-T-ATGTGA-TTACATGTAAGACCCTGTGTGGAACAGTGGCATC
*
16084920 GATATGTGATAACATGTAAGACC
1 GATATGTGATTACATGTAAGACC
16084943 ATATCTAGGA
Statistics
Matches: 121, Mismatches: 20, Indels: 22
0.74 0.12 0.13
Matches are distributed among these distances:
42 6 0.05
43 108 0.89
44 6 0.05
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCCTGTGTGGAACAGTGGCATC
Found at i:16088922 original size:13 final size:15
Alignment explanation
Indices: 16088902--16088932 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
16088892 GTTTAATACC
16088902 ATTATTATATCGTTAT
1 ATTATTAT-TCGTTAT
16088918 ATTATTATTCGTTAT
1 ATTATTATTCGTTAT
16088933 CTTAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTATTATTCGTTAT
Found at i:16090485 original size:41 final size:41
Alignment explanation
Indices: 16090418--16090500 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
16090408 CAAGTAATTC
* *
16090418 CTGGTGTGTGGTTCTGTATTCCAGAAAAGTTCTGGAAAGAG
1 CTGGCGTGTAGTTCTGTATTCCAGAAAAGTTCTGGAAAGAG
16090459 CTGGCGTGTAGTTCTGTATTCCAGAAAAGTTCTGGAAAGAG
1 CTGGCGTGTAGTTCTGTATTCCAGAAAAGTTCTGGAAAGAG
16090500 C
1 C
16090501 AGCCCCCTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.30
Consensus pattern (41 bp):
CTGGCGTGTAGTTCTGTATTCCAGAAAAGTTCTGGAAAGAG
Found at i:16093240 original size:26 final size:24
Alignment explanation
Indices: 16093210--16093357 Score: 107
Period size: 22 Copynumber: 6.2 Consensus size: 24
16093200 GGACTCACCA
16093210 CAGCTCGTAAGAGCTTACCTATATAT
1 CAGCTCGTAAGAGCTTA-CTAT-TAT
16093236 CAGCTCGTAAGAGCTTACTATT-T
1 CAGCTCGTAAGAGCTTACTATTAT
*
16093259 ACAGCTC-AATAGAGCTTA-TATT-T
1 -CAGCTCGTA-AGAGCTTACTATTAT
* *
16093282 CAGCTCGTATGAGCTTACT-GT-T
1 CAGCTCGTAAGAGCTTACTATTAT
* **
16093304 CAGCTC-AATAGAGCTTACCGTT-T
1 CAGCTCGTA-AGAGCTTACTATTAT
*
16093327 CAGCTCAGT-AGAGCTTACTGTTCAT
1 CAGCTC-GTAAGAGCTTACTATT-AT
16093352 CAGCTC
1 CAGCTC
16093358 AAGAGGAGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 21
0.77 0.08 0.16
Matches are distributed among these distances:
21 1 0.01
22 29 0.28
23 29 0.28
24 15 0.15
25 11 0.11
26 17 0.17
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTATTAT
Found at i:16093290 original size:46 final size:45
Alignment explanation
Indices: 16093229--16093369 Score: 151
Period size: 46 Copynumber: 3.0 Consensus size: 45
16093219 AGAGCTTACC
*
16093229 TATATATCAGCTCGTAAGAGCTTACTATTTACAGCTCAATAGAGCT
1 TATATTTCAGCTCGTAAGAGCTTACT-TTTACAGCTCAATAGAGCT
* *
16093275 TATATTTCAGCTCGTATGAGCTTACTGTT-CAGCTCAATAGAGCT
1 TATATTTCAGCTCGTAAGAGCTTACTTTTACAGCTCAATAGAGCT
** * *
16093319 TACCGTTTCAGCTCAGT-AGAGCTTACTGTTCATCAGCTCAAGAGGAGCT
1 TA-TATTTCAGCTC-GTAAGAGCTTACT-TTTA-CAGCTCAATA-GAGCT
16093368 TA
1 TA
16093370 CCAATCATGA
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
44 17 0.21
45 20 0.25
46 27 0.34
48 9 0.11
49 7 0.09
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (45 bp):
TATATTTCAGCTCGTAAGAGCTTACTTTTACAGCTCAATAGAGCT
Found at i:16093332 original size:23 final size:23
Alignment explanation
Indices: 16093245--16093370 Score: 132
Period size: 22 Copynumber: 5.4 Consensus size: 23
16093235 TCAGCTCGTA
*
16093245 AGAGCTTACTATTTACAGCTCAAT
1 AGAGCTTACTGTTT-CAGCTCAAT
* *
16093269 AGAGCTTA-TATTTCAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
16093290 ATGAGCTTACTG-TTCAGCTCAAT
1 A-GAGCTTACTGTTTCAGCTCAAT
* *
16093313 AGAGCTTACCGTTTCAGCTCAGT
1 AGAGCTTACTGTTTCAGCTCAAT
*
16093336 AGAGCTTACTGTTCATCAGCTCAAG
1 AGAGCTTACTGTT--TCAGCTCAAT
16093361 AGGAGCTTAC
1 A-GAGCTTAC
16093371 CAATCATGAC
Statistics
Matches: 87, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
21 2 0.02
22 30 0.34
23 30 0.34
24 8 0.09
25 9 0.10
26 8 0.09
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:16098967 original size:26 final size:26
Alignment explanation
Indices: 16098931--16098985 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
16098921 TACCTTTGAT
*
16098931 TCAAAATATCATAGAGTTTCACATCC
1 TCAAAATATCACAGAGTTTCACATCC
16098957 TCAAAATATCACAGAGTTTCACATCC
1 TCAAAATATCACAGAGTTTCACATCC
16098983 TCA
1 TCA
16098986 CTAAAGATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.29
Consensus pattern (26 bp):
TCAAAATATCACAGAGTTTCACATCC
Found at i:16101750 original size:51 final size:51
Alignment explanation
Indices: 16101674--16101790 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 51
16101664 CTGATCACAT
*
16101674 TTATCACTTGTCACTTTTAACTGATCAGATAAGTGTAGC-AGAAGCCACCAC
1 TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTA-AAGCCACCAC
* * * *
16101725 TTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACTAC
1 TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCCACCAC
16101776 TTATCACTTGTCACT
1 TTATCACTTGTCACT
16101791 GATCAGAAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 58 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCCACCAC
Found at i:16115490 original size:138 final size:137
Alignment explanation
Indices: 16115238--16115503 Score: 352
Period size: 138 Copynumber: 1.9 Consensus size: 137
16115228 TAGGGTTTTC
* * * *
16115238 ATGTTTCGGGTGCTGGTCCTGAATGTTCTACTGCTGGCTGAGGTCCATATTTGTTGCGGATACTC
1 ATGTTTCGGGTGCTGGTCCTAAATGTCCTACAGATGGCTGAGGTCCATATTTGTTGCGGATACTC
* * * *
16115303 ATTATCTTGTGTGAGCAGCATAATGTAACTTACATTCCGACCGTCAGCTTGTGTGGGCAGACCTA
66 ATCAGCTTATGTGAGCAGCATAATGTAACTTACATTCCGACCGTCAGCTTGTGTGAGCAGACCTA
16115368 GGCTATA
131 GGCTATA
* * **
16115375 ATGTTTCGGGTGCTGGTCCTAAATGTCCTACAGATGGTTGAGTTCTGGTATTTGTTGCGGATACT
1 ATGTTTCGGGTGCTGGTCCTAAATGTCCTACAGATGGCTGAGGTC-CATATTTGTTGCGGATACT
* ** ** * *
16115440 CATCAGCTTATGTGAGCGGCATCGTGTAGTTTACATTCCGATCGTTAGCTTGTGTGAGCAGACC
65 CATCAGCTTATGTGAGCAGCATAATGTAACTTACATTCCGACCGTCAGCTTGTGTGAGCAGACC
16115504 CAATTTATGG
Statistics
Matches: 109, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
137 39 0.36
138 70 0.64
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (137 bp):
ATGTTTCGGGTGCTGGTCCTAAATGTCCTACAGATGGCTGAGGTCCATATTTGTTGCGGATACTC
ATCAGCTTATGTGAGCAGCATAATGTAACTTACATTCCGACCGTCAGCTTGTGTGAGCAGACCTA
GGCTATA
Found at i:16115678 original size:16 final size:16
Alignment explanation
Indices: 16115630--16115680 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
16115620 GGTTAGGATG
16115630 AATGGAATAGGA-CTGT
1 AATGGAATA-GATCTGT
16115646 AATGGAATAGAGT-TGT
1 AATGGAATAGA-TCTGT
*
16115662 ACTGGAATAGATCTGT
1 AATGGAATAGATCTGT
16115678 AAT
1 AAT
16115681 TAGTAATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 3 0.10
16 27 0.90
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.29
Consensus pattern (16 bp):
AATGGAATAGATCTGT
Found at i:16122959 original size:22 final size:24
Alignment explanation
Indices: 16122931--16122983 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 24
16122921 TATGCTAAGC
* *
16122931 TACCAAACTTTAAACT-GGC-ACA
1 TACCAAAATATAAACTAGGCAACA
16122953 TACCAAAATATAAACTAGGCTAACA
1 TACCAAAATATAAACTAGGC-AACA
16122978 TACCAA
1 TACCAA
16122984 CATAGCCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 14 0.54
23 3 0.12
25 9 0.35
ACGTcount: A:0.47, C:0.25, G:0.08, T:0.21
Consensus pattern (24 bp):
TACCAAAATATAAACTAGGCAACA
Found at i:16124710 original size:9 final size:9
Alignment explanation
Indices: 16124692--16124733 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
16124682 CGTGTGCCCC
*
16124692 TTTCTCTCT
1 TTTCTTTCT
16124701 TTTCTTTC-
1 TTTCTTTCT
16124709 TTTCTTTACTT
1 TTTCTTT-C-T
16124720 TTTCTTTCT
1 TTTCTTTCT
16124729 TTTCT
1 TTTCT
16124734 AATGTTTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 7 0.24
9 14 0.48
10 1 0.03
11 7 0.24
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:16130710 original size:31 final size:31
Alignment explanation
Indices: 16130675--16130735 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
16130665 GCATTACCAA
*
16130675 AACTTTCAAAATATTTTTCAAAAAAATTATG
1 AACTTTCAAAACATTTTTCAAAAAAATTATG
* *
16130706 AACTTTCAGAACATTTTTCAAACAAATTAT
1 AACTTTCAAAACATTTTTCAAAAAAATTAT
16130736 ATAAATTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (31 bp):
AACTTTCAAAACATTTTTCAAAAAAATTATG
Found at i:16133702 original size:59 final size:59
Alignment explanation
Indices: 16133605--16133815 Score: 298
Period size: 59 Copynumber: 3.6 Consensus size: 59
16133595 GTGAAAGTTG
* * *
16133605 AAAAGCCCCAGTTGTGTTATCTTTCAAAATTTTATTAAGTATGAAATAACTCACAGATT
1 AAAATCCCCAGTTGTGTTATCTTTCAAAATTTTCTTAAGTATGAAATAACTCGCAGATT
* *
16133664 AAAATCCCCAGTTGTGTTATCTTTCAAATTTTTCTTAAGTATGAAATAGA-TCGTAGATT
1 AAAATCCCCAGTTGTGTTATCTTTCAAAATTTTCTTAAGTATGAAATA-ACTCGCAGATT
* * * * *
16133723 AAAATCCCCAATTGTGTTATCTTTCAAAATTTTCTAAAGTATGAAATAGCTTGCGGATT
1 AAAATCCCCAGTTGTGTTATCTTTCAAAATTTTCTTAAGTATGAAATAACTCGCAGATT
* *
16133782 AACATCCCTAGTTGTGTTATCTTTCAAAATTTTC
1 AAAATCCCCAGTTGTGTTATCTTTCAAAATTTTC
16133816 CTACACCTCG
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
59 134 0.99
60 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (59 bp):
AAAATCCCCAGTTGTGTTATCTTTCAAAATTTTCTTAAGTATGAAATAACTCGCAGATT
Found at i:16136516 original size:8 final size:8
Alignment explanation
Indices: 16136505--16136534 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
16136495 TACCTTTTTT
16136505 TTTTTTAC
1 TTTTTTAC
16136513 TTTTTTAC
1 TTTTTTAC
16136521 TTTTTTAC
1 TTTTTTAC
16136529 TTTTTT
1 TTTTTT
16136535 TTGTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTAC
Found at i:16136541 original size:16 final size:15
Alignment explanation
Indices: 16136499--16136542 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
16136489 TGTCAGTACC
16136499 TTTTTTTTTTTTACT
1 TTTTTTTTTTTTACT
*
16136514 TTTTTACTTTTTTACT
1 TTTTT-TTTTTTTACT
16136530 TTTTTTTGTTTTT
1 TTTTTTT-TTTTT
16136543 TTGTCTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.07, C:0.07, G:0.02, T:0.84
Consensus pattern (15 bp):
TTTTTTTTTTTTACT
Found at i:16136555 original size:4 final size:4
Alignment explanation
Indices: 16136548--16136582 Score: 61
Period size: 4 Copynumber: 8.5 Consensus size: 4
16136538 TTTTTTTGTC
16136548 TTTA TTTA TTTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TT
16136583 ATTAATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:16136559 original size:17 final size:17
Alignment explanation
Indices: 16136548--16136592 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 17
16136538 TTTTTTTGTC
16136548 TTTATTTATTTTATTTA
1 TTTATTTATTTTATTTA
16136565 TTTATTTA-TTTATTTA
1 TTTATTTATTTTATTTA
*
16136581 -TTATTAATTTTA
1 TTTATTTATTTTA
16136593 AAATTTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 6 0.23
16 12 0.46
17 8 0.31
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTATTTTATTTA
Found at i:16136614 original size:22 final size:22
Alignment explanation
Indices: 16136589--16136658 Score: 79
Period size: 24 Copynumber: 3.1 Consensus size: 22
16136579 TATTATTAAT
16136589 TTTAAAATTTTTTAAATATATA
1 TTTAAAATTTTTTAAATATATA
*
16136611 TTTAAAATATTTTATTAATATATA
1 TTTAAAAT-TTTT-TAAATATATA
***
16136635 TTTTTTA-TTTTTAAATATATA
1 TTTAAAATTTTTTAAATATATA
16136656 TTT
1 TTT
16136659 TGAAATTACT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 12 0.29
22 12 0.29
23 4 0.10
24 13 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTAAAATTTTTTAAATATATA
Found at i:16136630 original size:24 final size:23
Alignment explanation
Indices: 16136577--16136658 Score: 75
Period size: 21 Copynumber: 3.7 Consensus size: 23
16136567 TATTTATTTA
*
16136577 TTTATTATTA-AT-TTTAAAATT
1 TTTATTAATATATATTTAAAATT
*
16136598 TTT-TAAATATATATTTAAAATAT
1 TTTATTAATATATATTTAAAAT-T
***
16136621 TTTATTAATATATATTTTTTATT
1 TTTATTAATATATATTTAAAATT
16136644 TTTA--AATATATATTT
1 TTTATTAATATATATTT
16136659 TGAAATTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
20 4 0.08
21 16 0.31
22 8 0.16
23 9 0.18
24 14 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTATTAATATATATTTAAAATT
Found at i:16136679 original size:21 final size:22
Alignment explanation
Indices: 16136653--16136708 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 22
16136643 TTTTAAATAT
*
16136653 ATATTTTGAA-ATTACTTTTTTA
1 ATATTTTAAATATTA-TTTTTTA
16136675 A-ATTTTAAATATTATTTTTTA
1 ATATTTTAAATATTATTTTTTA
16136696 ATA-TTTAAATATT
1 ATATTTTAAATATT
16136709 TTAAACTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 25 0.81
22 6 0.19
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
ATATTTTAAATATTATTTTTTA
Found at i:16136760 original size:19 final size:19
Alignment explanation
Indices: 16136733--16136783 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
16136723 TTTTTATTAG
16136733 TTTTATAATTATTTA-AATA
1 TTTT-TAATTATTTATAATA
*
16136752 TTATTTAATTTTTTTATAATA
1 TT-TTTAA-TTATTTATAATA
*
16136773 TTTTAAATTAT
1 TTTTTAATTAT
16136784 GATTTTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 8 0.31
20 12 0.46
21 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTAATTATTTATAATA
Found at i:16137138 original size:12 final size:13
Alignment explanation
Indices: 16137105--16137138 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
16137095 TTTTTTTAAA
16137105 ATTTTAAA-TATT
1 ATTTTAAATTATT
16137117 ATTTTAAATTATT
1 ATTTTAAATTATT
16137130 -TTTTAAATT
1 ATTTTAAATT
16137139 TTGAATATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTAAATTATT
Found at i:16137166 original size:21 final size:22
Alignment explanation
Indices: 16137126--16137176 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
16137116 TATTTTAAAT
** *
16137126 TATTTTTTAAATTTTGAATAT-
1 TATTTTTTAAAAATTAAATATA
*
16137147 TCTTTTTTAAAAATTAAATATA
1 TATTTTTTAAAAATTAAATATA
16137169 TATTTTTT
1 TATTTTTT
16137177 TTAAAAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTTTTTAAAAATTAAATATA
Found at i:16137186 original size:21 final size:21
Alignment explanation
Indices: 16137143--16137200 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 21
16137133 TAAATTTTGA
16137143 ATATTCTTTTTTAAAAATTAAATAT
1 ATATT-TTTTTT-AAAA-TAAAT-T
16137168 ATATTTTTTTTAAAA-AAATT
1 ATATTTTTTTTAAAATAAATT
*
16137188 -TACTTTTTTTAAA
1 ATATTTTTTTTAAA
16137201 CTTTTGTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 12 0.38
20 1 0.03
21 4 0.12
23 4 0.12
24 6 0.19
25 5 0.16
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
ATATTTTTTTTAAAATAAATT
Found at i:16137283 original size:24 final size:25
Alignment explanation
Indices: 16137248--16137295 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
16137238 TTCATCTATA
*
16137248 TTTATTTATTTATT-TTTATTTTAT
1 TTTATTTATTTATTATTAATTTTAT
16137272 TTTACTTT-TTTATTATTAATTTTA
1 TTTA-TTTATTTATTATTAATTTTA
16137296 AAAAACTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (25 bp):
TTTATTTATTTATTATTAATTTTAT
Found at i:16137357 original size:22 final size:23
Alignment explanation
Indices: 16137310--16137369 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
16137300 ACTTGAAATG
16137310 TATATTTGAAATGTTTTATAATATA
1 TATATTTGAAA--TTTTATAATATA
* *
16137335 TATTTTTTAAATTTTA-AATATA
1 TATATTTGAAATTTTATAATATA
16137357 TATATTTGAAATT
1 TATATTTGAAATT
16137370 GTTTTTCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 17 0.55
23 5 0.16
25 9 0.29
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
TATATTTGAAATTTTATAATATA
Found at i:16137460 original size:19 final size:19
Alignment explanation
Indices: 16137411--16137466 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
16137401 TCATTGTTTA
16137411 AAAAT-TTAAATATTATTTTT
1 AAAATATTAAA-A-TATTTTT
*
16137431 TAAATATTAAAATATTTTT
1 AAAATATTAAAATATTTTT
*
16137450 AATAATA-TAAAACATTT
1 AA-AATATTAAAATATTT
16137467 AAATATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 17 0.55
20 9 0.29
21 5 0.16
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAATATTAAAATATTTTT
Found at i:16137567 original size:13 final size:13
Alignment explanation
Indices: 16137549--16137589 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
16137539 TTTTATAATT
16137549 TTTTTAATTATGA
1 TTTTTAATTATGA
*
16137562 TTTTTAA--ATTA
1 TTTTTAATTATGA
*
16137573 TTTTAAATTATGA
1 TTTTTAATTATGA
16137586 TTTT
1 TTTT
16137590 GAAATCATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 9 0.39
13 14 0.61
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (13 bp):
TTTTTAATTATGA
Found at i:16137567 original size:24 final size:24
Alignment explanation
Indices: 16137539--16137618 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
16137529 TTTTAGTTTG
*
16137539 TTTTATAATT-TTTTTAATTATGAT
1 TTTTA-AATTATTTTAAATTATGAT
16137563 TTTTAAATTATTTTAAATTATGAT
1 TTTTAAATTATTTTAAATTATGAT
* * * *
16137587 TTTGAAATCATTTAAAATATATTAT
1 TTTTAAATTATTTTAAAT-TATGAT
16137612 TTTTAAA
1 TTTTAAA
16137619 GATATGACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
23 4 0.08
24 33 0.69
25 11 0.23
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTAAATTATTTTAAATTATGAT
Found at i:16137723 original size:15 final size:15
Alignment explanation
Indices: 16137682--16137725 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
16137672 TATTTTATTT
16137682 TTAAATTTAAAA-TA
1 TTAAATTTAAAATTA
*
16137696 -TAATTTTATAAATTA
1 TTAAATTTA-AAATTA
16137711 TTAAATTTAAAATTA
1 TTAAATTTAAAATTA
16137726 ATTTTAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 7 0.28
14 3 0.12
15 8 0.32
16 7 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAAATTTAAAATTA
Found at i:16139134 original size:26 final size:27
Alignment explanation
Indices: 16139097--16139154 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
16139087 TTGCAACTGC
16139097 ATCATGCCACTAGTGAAAGATAATCCA
1 ATCATGCCACTAGTGAAAGATAATCCA
16139124 ATCAT-CCACTAGTGAAAGATAATCCA
1 ATCATGCCACTAGTGAAAGATAATCCA
16139150 ATCAT
1 ATCAT
16139155 TCCTGTGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.24
Consensus pattern (27 bp):
ATCATGCCACTAGTGAAAGATAATCCA
Found at i:16141898 original size:30 final size:30
Alignment explanation
Indices: 16141863--16141944 Score: 130
Period size: 30 Copynumber: 2.7 Consensus size: 30
16141853 CGGTGGTTGC
* *
16141863 TCTGGGTGAAATGAACTCGAACCGCCTATG
1 TCTGGGTGATATGAACTTGAACCGCCTATG
16141893 TCTGGGTGATATGAACTTGAACCGCCTATG
1 TCTGGGTGATATGAACTTGAACCGCCTATG
16141923 T-TCGGGTGATATGAACTTGAAC
1 TCT-GGGTGATATGAACTTGAAC
16141945 TGACAATTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 1 0.02
30 48 0.98
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (30 bp):
TCTGGGTGATATGAACTTGAACCGCCTATG
Found at i:16141962 original size:30 final size:31
Alignment explanation
Indices: 16141863--16141966 Score: 115
Period size: 30 Copynumber: 3.5 Consensus size: 31
16141853 CGGTGGTTGC
* * * *
16141863 TCTGGGTGAAATGAACTCGAACCGCCTATG-
1 TCTGGGTGATATGAACTTGAACCGACAATGT
* *
16141893 TCTGGGTGATATGAACTTGAACCGCCTATGT
1 TCTGGGTGATATGAACTTGAACCGACAATGT
*
16141924 TC-GGGTGATATGAACTTGAACTGACAAT-T
1 TCTGGGTGATATGAACTTGAACCGACAATGT
*
16141953 TCTGAGTGATATGA
1 TCTGGGTGATATGA
16141967 GCTGATCTGC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
29 3 0.05
30 61 0.92
31 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (31 bp):
TCTGGGTGATATGAACTTGAACCGACAATGT
Found at i:16144316 original size:20 final size:20
Alignment explanation
Indices: 16144293--16144359 Score: 52
Period size: 20 Copynumber: 3.4 Consensus size: 20
16144283 TTAAGTACAT
16144293 AAATTTATGAATGTGTACTA
1 AAATTTATGAATGTGTACTA
*
16144313 AAA-TTA-GAAAAT-TAATA-TA
1 AAATTTATG--AATGT-GTACTA
*
16144332 TAAATTTATAAATGTGTACTA
1 -AAATTTATGAATGTGTACTA
16144353 AAATTTA
1 AAATTTA
16144360 AAAATTATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 16
0.65 0.05 0.29
Matches are distributed among these distances:
18 1 0.03
19 6 0.17
20 23 0.64
21 6 0.17
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.39
Consensus pattern (20 bp):
AAATTTATGAATGTGTACTA
Found at i:16144364 original size:20 final size:20
Alignment explanation
Indices: 16144302--16144364 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
16144292 TAAATTTATG
16144302 AATGTGTACTAAAA-TTAGAA
1 AATGTGTACTAAAATTTA-AA
* *
16144322 AAT-TAATA-TATAAATTTATA
1 AATGT-GTACTA-AAATTTAAA
16144342 AATGTGTACTAAAATTTAAA
1 AATGTGTACTAAAATTTAAA
16144362 AAT
1 AAT
16144365 TATAACCAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
19 3 0.09
20 25 0.74
21 6 0.18
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (20 bp):
AATGTGTACTAAAATTTAAA
Found at i:16144890 original size:18 final size:19
Alignment explanation
Indices: 16144856--16144897 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
16144846 ATATATTTTT
16144856 AAATAAATTCATTTTTAAC
1 AAATAAATTCATTTTTAAC
*
16144875 AAATAAA-TCTTTTTTAAC
1 AAATAAATTCATTTTTAAC
16144893 AAATA
1 AAATA
16144898 TTTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (19 bp):
AAATAAATTCATTTTTAAC
Found at i:16145229 original size:21 final size:23
Alignment explanation
Indices: 16145173--16145229 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 23
16145163 ATATCTTTAA
16145173 AAATAAT-TTTAAAATCATAATT
1 AAATAATATTTAAAATCATAATT
*
16145195 TAA-AATATTATAAAA-CA-AATT
1 AAATAATATT-TAAAATCATAATT
16145216 AAATAATATTTAAA
1 AAATAATATTTAAA
16145230 TTATTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 13 0.43
22 12 0.40
23 5 0.17
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATAATATTTAAAATCATAATT
Found at i:16145292 original size:22 final size:22
Alignment explanation
Indices: 16145265--16145319 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
16145255 GAAAGTTGAA
16145265 AATATTT-AAATATTAAAAAAAT
1 AATATTTAAAAT-TTAAAAAAAT
*
16145287 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTTAAAAAAAT
16145309 AAT-TTTAAAAT
1 AATATTTAAAAT
16145320 ATATATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 8 0.26
22 19 0.61
23 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAAT
Found at i:16145306 original size:21 final size:22
Alignment explanation
Indices: 16145265--16145319 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 22
16145255 GAAAGTTGAA
16145265 AATATTTAAATATTAAAAAAA-T
1 AATATTTAAA-ATTAAAAAAAGT
*
16145287 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTAAAAAAAGT
16145309 AAT-TTTAAAAT
1 AATATTTAAAAT
16145320 ATATATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AATATTTAAAATTAAAAAAAGT
Found at i:16145343 original size:22 final size:22
Alignment explanation
Indices: 16145315--16145379 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
16145305 AAGTAATTTT
16145315 AAAATATATATTTAAAATTTAA
1 AAAATATATATTTAAAATTTAA
* * *
16145337 AAAATATATTAATAAAATATTTTA
1 AAAATATA-TATTTAAA-ATTTAA
*
16145361 AATATATAT-TTTAAAATTT
1 AAAATATATATTTAAAATTT
16145380 TTAAAATTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 4 0.11
22 12 0.34
23 7 0.20
24 12 0.34
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAATATATATTTAAAATTTAA
Found at i:16145353 original size:35 final size:36
Alignment explanation
Indices: 16145274--16145356 Score: 120
Period size: 34 Copynumber: 2.4 Consensus size: 36
16145264 AAATATTTAA
*
16145274 ATATTAAAAAAATA-ATATTTAAAATTTAAAAAAGT
1 ATATTAATAAAATATATATTTAAAATTTAAAAAAGT
*
16145309 A-ATT-TTAAAATATATATTTAAAATTTAAAAAA-T
1 ATATTAATAAAATATATATTTAAAATTTAAAAAAGT
16145342 ATATTAATAAAATAT
1 ATATTAATAAAATAT
16145357 TTTAAATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 8 0.19
34 25 0.60
35 9 0.21
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (36 bp):
ATATTAATAAAATATATATTTAAAATTTAAAAAAGT
Found at i:16145381 original size:22 final size:22
Alignment explanation
Indices: 16145309--16145386 Score: 88
Period size: 24 Copynumber: 3.5 Consensus size: 22
16145299 TTAAAAAAGT
16145309 AATTTTAAAATATATA-TTTAA
1 AATTTTAAAATATATATTTTAA
* *
16145330 AA-TTTAAAAAATATATTAATAA
1 AATTTTAAAATATATATT-TTAA
*
16145352 AATATTTTAAATATATATTTTAA
1 AAT-TTTAAAATATATATTTTAA
16145375 AATTTTTAAAAT
1 AA-TTTTAAAAT
16145387 TAATAATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 12 0.26
21 3 0.07
22 5 0.11
23 12 0.26
24 14 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
AATTTTAAAATATATATTTTAA
Found at i:16145394 original size:44 final size:45
Alignment explanation
Indices: 16145310--16145395 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
16145300 TAAAAAAGTA
*
16145310 ATTTTAAAATATATATTTAAAATTTAAAAAATATATTAATAAAAT
1 ATTTTAAAATATATATTTAAAATTTAAAAAATATAATAATAAAAT
**
16145355 ATTTT-AAATATATATTTTAAAATTTTTAAAAT-TAATAATAA
1 ATTTTAAAATATATA-TTTAAAATTTAAAAAATATAATAATAA
16145396 TAAATAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 17 0.46
45 20 0.54
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (45 bp):
ATTTTAAAATATATATTTAAAATTTAAAAAATATAATAATAAAAT
Found at i:16159367 original size:19 final size:19
Alignment explanation
Indices: 16159344--16159385 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
16159334 TAACATAATG
16159344 ATATATATAATATATTTTATT
1 ATATATAT-ATATA-TTTATT
*
16159365 ATATATTTATATATTTATT
1 ATATATATATATATTTATT
16159384 AT
1 AT
16159386 TTAATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 5 0.25
21 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATATATATATATATTTATT
Found at i:16160306 original size:25 final size:25
Alignment explanation
Indices: 16160272--16160321 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
16160262 TAAACAAAAT
16160272 AAAAAGCAAAACCATATCAATAATC
1 AAAAAGCAAAACCATATCAATAATC
16160297 AAAAAGCAAAACCATATCAATAATC
1 AAAAAGCAAAACCATATCAATAATC
16160322 CATCACTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.60, C:0.20, G:0.04, T:0.16
Consensus pattern (25 bp):
AAAAAGCAAAACCATATCAATAATC
Found at i:16160467 original size:24 final size:23
Alignment explanation
Indices: 16160419--16160473 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
16160409 CCGTTAAATT
* *
16160419 AACTTATAAAAAAATAATATGAC
1 AACTTTTAAAAAAATAATATAAC
16160442 AACTTTTAAAATAAAT-ATAATAAC
1 AACTTTTAAAA-AAATAAT-ATAAC
16160466 AA-TTTTAA
1 AACTTTTAA
16160474 CCTTCAAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (23 bp):
AACTTTTAAAAAAATAATATAAC
Found at i:16161890 original size:19 final size:19
Alignment explanation
Indices: 16161857--16161902 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
16161847 TAAAAGAATA
16161857 ATTTTATTATTTATTAATT
1 ATTTTATTATTTATTAATT
*
16161876 ATTTT-TTATTCTATTTATT
1 ATTTTATTATT-TATTAATT
16161895 ATTGTTAT
1 ATT-TTAT
16161903 ATTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 15 0.65
20 2 0.09
21 1 0.04
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTTATTATTTATTAATT
Found at i:16161993 original size:19 final size:19
Alignment explanation
Indices: 16161965--16162015 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 19
16161955 AGTTATAAAA
16161965 ATATTTTAATTAATTAATT
1 ATATTTTAATTAATTAATT
* *
16161984 ATATTATAATT--TTTATT
1 ATATTTTAATTAATTAATT
16162001 ATATTTTAATATAAT
1 ATATTTTAAT-TAAT
16162016 CATACGTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 14 0.54
18 1 0.04
19 10 0.38
20 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATATTTTAATTAATTAATT
Found at i:16162195 original size:22 final size:23
Alignment explanation
Indices: 16162147--16162195 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
16162137 ATAACTCTAT
* * *
16162147 TAAACTTATAACCATAATACATT
1 TAAACTTATAACCAAAATAAATC
*
16162170 TAAACTTA-AACTAAAATAAATC
1 TAAACTTATAACCAAAATAAATC
16162192 TAAA
1 TAAA
16162196 GAAAACCCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAACTTATAACCAAAATAAATC
Found at i:16163682 original size:27 final size:28
Alignment explanation
Indices: 16163630--16163757 Score: 130
Period size: 28 Copynumber: 4.4 Consensus size: 28
16163620 GGTTTTTATT
16163630 AAAATAAATTAAGGTTTATGGATTTTAA
1 AAAATAAATTAAGGTTTATGGATTTTAA
* *
16163658 AAAATAAATTAGGGTTTATGGTTTTTAAAAA
1 AAAATAAATTAAGGTTTATGGATTTT---AA
** *
16163689 ATAAATTAAATTAAGGTTTATTGTTTTTTTA
1 A-AAA-TAAATTAAGGTTTA-TGGATTTTAA
* * *
16163720 AAAATAAACTAAGGTTTAGGGATTTTTA
1 AAAATAAATTAAGGTTTATGGATTTTAA
16163748 AAAATAAATT
1 AAAATAAATT
16163758 TGTGTTTAGG
Statistics
Matches: 84, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
28 40 0.48
29 13 0.15
30 3 0.04
31 5 0.06
32 3 0.04
33 13 0.15
34 7 0.08
ACGTcount: A:0.45, C:0.01, G:0.13, T:0.41
Consensus pattern (28 bp):
AAAATAAATTAAGGTTTATGGATTTTAA
Found at i:16163737 original size:62 final size:61
Alignment explanation
Indices: 16163629--16163757 Score: 170
Period size: 62 Copynumber: 2.1 Consensus size: 61
16163619 CGGTTTTTAT
* * * *
16163629 TAAAATAAATTAAGGTTTATGGATTTTAAAAAATAAATTAGGGTTTATGG-TTTTTAAAAAA
1 TAAATTAAATTAAGGTTTATGGATTTTAAAAAATAAACTAAGGTTTAGGGATTTTT-AAAAA
** *
16163690 TAAATTAAATTAAGGTTTATTGTTTTTTTAAAAATAAACTAAGGTTTAGGGATTTTTAAAAA
1 TAAATTAAATTAAGGTTTA-TGGATTTTAAAAAATAAACTAAGGTTTAGGGATTTTTAAAAA
16163752 TAAATT
1 TAAATT
16163758 TGTGTTTAGG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
61 18 0.31
62 36 0.61
63 5 0.08
ACGTcount: A:0.44, C:0.01, G:0.13, T:0.42
Consensus pattern (61 bp):
TAAATTAAATTAAGGTTTATGGATTTTAAAAAATAAACTAAGGTTTAGGGATTTTTAAAAA
Found at i:16163764 original size:28 final size:27
Alignment explanation
Indices: 16163620--16163772 Score: 83
Period size: 28 Copynumber: 5.2 Consensus size: 27
16163610 TTAGGGTTAC
*
16163620 GGTTTTTATTAAAATAAATTAAGGTTTATG
1 GGTTTTTA--AAAATAAACTAAGGTTTA-G
* * * * *
16163650 GATTTTAAAAAATAAATTAGGGTTTAT
1 GGTTTTTAAAAATAAACTAAGGTTTAG
*
16163677 GGTTTTTAAAAAATAAATTAAATTAAGGTTTATTG
1 GGTTTTT----AA-AAA-TAAACTAAGGTTTA--G
**
16163712 TTTTTTTAAAAATAAACTAAGGTTTAG
1 GGTTTTTAAAAATAAACTAAGGTTTAG
**
16163739 GGATTTTTAAAAATAAA-TTTGTGTTTAG
1 GG-TTTTTAAAAATAAACTAAG-GTTTAG
16163767 GGTTTT
1 GGTTTT
16163773 AGGGCTTTTG
Statistics
Matches: 98, Mismatches: 15, Indels: 23
0.72 0.11 0.17
Matches are distributed among these distances:
27 12 0.12
28 39 0.40
29 13 0.13
30 9 0.09
31 4 0.04
32 3 0.03
33 13 0.13
35 5 0.05
ACGTcount: A:0.39, C:0.01, G:0.16, T:0.45
Consensus pattern (27 bp):
GGTTTTTAAAAATAAACTAAGGTTTAG
Found at i:16164024 original size:126 final size:126
Alignment explanation
Indices: 16163854--16164492 Score: 849
Period size: 126 Copynumber: 5.1 Consensus size: 126
16163844 TTTTGTTCAC
* * * *
16163854 TCAGCAAAAGTACTGAAAAAAGTTCTCAG-TTGATGCTATTTTTCTACAGTAGTTTCTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
* * * * *
16163918 TAATTTTGAAAAGATGGTTCTAAAAAAATAGGGTCAAAAACGCTTCAAGTAAGATGCACTG
66 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
* * * * *
16163979 TCAGCAAAACTATTGAAAAAAGCTCCCAGCTGGATGCTATGTTTCTACAGTAGTTTCTG----AA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
* *
16164040 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACACTTCAAGCAGGATGCACTT
66 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
* *
16164101 TCAGCAAAAGTACTTAAAAAAGCTCCCAGATGGACGCTCTTTTTCTACAGTAGTTTCTG-AAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
* * * * * * *
16164165 TAATTGTAAGAAGATGATTCTGAAAAAATAAGGTCAAAAACACTTCAAGTAGGATGCACTG
66 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
*
16164226 TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTTTTTTTCTACAGTAGTTTCTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
* * *
16164291 TAATTTTGAGAAGATGGTTCTAAAAAAATAGGGTAAAAAATGCTTTAAGCAGGATGCACTG
66 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
** * * * *
16164352 TCAGCAAAAACACTGAAAAAAGCTCCCAGCTAGACGCTCTTTTTCTACGGTAGTTTCTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
* * * * * *
16164417 TAATTTTGAGAAGATGATTATGAAAAAATAGGGTAAAAAAATGCTTCAAGCAAGATGTACTA
66 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGT-AAAAAACGCTTCAAGCAGGATGCACTG
*
16164479 TCAACAAAAGTACT
1 TCAGCAAAAGTACT
16164493 AAACCACCTG
Statistics
Matches: 453, Mismatches: 55, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
122 108 0.24
125 138 0.30
126 173 0.38
127 34 0.08
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (126 bp):
TCAGCAAAAGTACTGAAAAAAGCTCCCAGATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTG
Found at i:16164661 original size:25 final size:25
Alignment explanation
Indices: 16164590--16164661 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
16164580 TTACAATAAG
* *
16164590 AGAAATTAGAGAAGTTCAGAAAAAT
1 AGAAATTAAAGAAGTTCAGAAGAAT
16164615 AGAAATTGAAA-AAGTTCAGAAGAAT
1 AGAAATT-AAAGAAGTTCAGAAGAAT
** *
16164640 ATCAATTAAAGAAGTTAAGAAG
1 AGAAATTAAAGAAGTTCAGAAG
16164662 GTATAAGTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 3 0.08
25 35 0.88
26 2 0.05
ACGTcount: A:0.56, C:0.04, G:0.19, T:0.21
Consensus pattern (25 bp):
AGAAATTAAAGAAGTTCAGAAGAAT
Found at i:16167746 original size:62 final size:61
Alignment explanation
Indices: 16167677--16167860 Score: 241
Period size: 62 Copynumber: 3.0 Consensus size: 61
16167667 TCTATTGCCT
* *
16167677 TATTCAAAAGAACTTCTATTTTATTAAATAGAACAAAATATAAAAATAATTTACTATTAAA-A
1 TATTCAAAACAACTTCTATTTTATTAAATAGAACAAAATATAAAAATAATTT-CTA-CAAATA
* * *
16167739 TATTCAAAATAAC-TCTTATTTTATTAAATAGGACAAAATATAAAAATAATTTGTACAAATA
1 TATTCAAAACAACTTC-TATTTTATTAAATAGAACAAAATATAAAAATAATTTCTACAAATA
* * *
16167800 TATTCAAAACAACTTATATTTTATTAAAT-GAA-ACAATATAAAAATAATTTGTACAAATA
1 TATTCAAAACAACTTCTATTTTATTAAATAGAACAAAATATAAAAATAATTTCTACAAATA
16167859 TA
1 TA
16167861 CTAAAAAAAT
Statistics
Matches: 111, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
59 28 0.25
60 5 0.05
61 30 0.27
62 48 0.43
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (61 bp):
TATTCAAAACAACTTCTATTTTATTAAATAGAACAAAATATAAAAATAATTTCTACAAATA
Found at i:16168242 original size:18 final size:18
Alignment explanation
Indices: 16168216--16168257 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
16168206 GATTGAGAAA
* *
16168216 AGGAAACATATAAGAGTT
1 AGGATACATATAAGAGCT
*
16168234 AGGATACATATAAGGGCT
1 AGGATACATATAAGAGCT
16168252 AGGATA
1 AGGATA
16168258 TGCATCTGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGAGCT
Found at i:16172459 original size:16 final size:16
Alignment explanation
Indices: 16172433--16172469 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
16172423 CATGTCATTC
16172433 TGATA-ATCCTTTGAA
1 TGATATATCCTTTGAA
16172448 TGATATATCCTTTGAA
1 TGATATATCCTTTGAA
16172464 TGATAT
1 TGATAT
16172470 GTGCAGGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (16 bp):
TGATATATCCTTTGAA
Found at i:16176763 original size:3 final size:3
Alignment explanation
Indices: 16176385--16176746 Score: 118
Period size: 3 Copynumber: 118.7 Consensus size: 3
16176375 TTTAATATAC
*
16176385 TAT TATT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
16176431 TAT TAT TAT TAG TA- TAT TTT TAC TAT TTT TAC TAT TAT TAT TAGC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
16176476 GACC TAT TAC TAT TCT TAT TAG TA- TAC TAT TAT T-T CCTAT T-T T-T
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT
* * * *
16176520 TA- TAT TAT TGT TGT TAT TAACT TA- TAT TAT TAT TAT CAC TAT TAT
1 TAT TAT TAT TAT TAT TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
16176565 TGT T-T TAC TAT TAT TAT CTAAT GTAT TTT TGT TAT CAT TAAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -T-AT -TAT TAT TAT TAT TAT T-AT TAT TAT
* * ** * * * * * *
16176613 TAC TAC TGC TAC TAT TCT TAT TAA CA- TAT TAT TAT TAT TTT TAC TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
16176659 TAT TAT TAT T-T CTTT TTT TGCA- TAT TAT TAT TAT TGT TAT TAA CAT
1 TAT TAT TAT TAT -TAT TAT T--AT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
16176705 ATAT TAT TAAT GTAT TGT TAT TCT CTAT TAC TAT TAT TAT TA
1 -TAT TAT T-AT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TA
16176747 CCATATCATT
Statistics
Matches: 270, Mismatches: 62, Indels: 54
0.70 0.16 0.14
Matches are distributed among these distances:
2 20 0.07
3 218 0.81
4 25 0.09
5 7 0.03
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:16176778 original size:23 final size:20
Alignment explanation
Indices: 16176765--16176802 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16176755 TTATTATTAA
*
16176765 GGTATTATTTTCATTATTTT
1 GGTATCATTTTCATTATTTT
*
16176785 GGTATCATTTTAATTATT
1 GGTATCATTTTCATTATT
16176803 CTTTGTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.61
Consensus pattern (20 bp):
GGTATCATTTTCATTATTTT
Found at i:16176780 original size:20 final size:20
Alignment explanation
Indices: 16176757--16176802 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
16176747 CCATATCATT
* *
16176757 ATTATTAAGGTATTATTTTC
1 ATTATTAAGGTATCATTTTA
**
16176777 ATTATTTTGGTATCATTTTA
1 ATTATTAAGGTATCATTTTA
16176797 ATTATT
1 ATTATT
16176803 CTTTGTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.59
Consensus pattern (20 bp):
ATTATTAAGGTATCATTTTA
Found at i:16179711 original size:12 final size:12
Alignment explanation
Indices: 16179694--16179721 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
16179684 CAACACTCAA
16179694 TTTTTCTTTTCT
1 TTTTTCTTTTCT
16179706 TTTTTCTTTTCT
1 TTTTTCTTTTCT
16179718 TTTT
1 TTTT
16179722 AAGTCTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTCT
Found at i:16180378 original size:15 final size:15
Alignment explanation
Indices: 16180351--16180392 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
16180341 AACCACAATT
16180351 AATTAACTTTTTTTAA
1 AATTAA-TTTTTTTAA
16180367 AATTAATTTTTTTAA
1 AATTAATTTTTTTAA
*
16180382 AAAT-ATTTTTT
1 AATTAATTTTTT
16180393 GAGTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 7 0.28
15 12 0.48
16 6 0.24
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
AATTAATTTTTTTAA
Found at i:16181291 original size:24 final size:25
Alignment explanation
Indices: 16181264--16181312 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
16181254 CTTTTTTTAT
*
16181264 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
16181288 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
16181313 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:16181305 original size:25 final size:23
Alignment explanation
Indices: 16181276--16181340 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
16181266 AATAAAAAAC
*
16181276 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
16181301 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
16181322 -TTAAAATA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
16181341 AAAAATGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 10 0.27
20 7 0.19
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:16181327 original size:20 final size:19
Alignment explanation
Indices: 16181302--16181340 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
16181292 TCAAATACAT
16181302 TTAAAACATAAAAACAAATA
1 TTAAAACA-AAAAACAAATA
*
16181322 TTAAAATAAAAAACAAATA
1 TTAAAACAAAAAACAAATA
16181341 AAAAATGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (19 bp):
TTAAAACAAAAAACAAATA
Found at i:16181450 original size:12 final size:12
Alignment explanation
Indices: 16181428--16181456 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16181418 AATTTGAAAC
16181428 AAATT-AGAACT
1 AAATTAAGAACT
16181439 AAATTAAGAACT
1 AAATTAAGAACT
16181451 AAATTA
1 AAATTA
16181457 TATTAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (12 bp):
AAATTAAGAACT
Found at i:16188484 original size:24 final size:24
Alignment explanation
Indices: 16188448--16188495 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
16188438 TATCATCTTG
16188448 TGCAACTAATTCTACTGCCACCAT
1 TGCAACTAATTCTACTGCCACCAT
** *
16188472 TGCAACTCTTTCTACTGCCGCCAT
1 TGCAACTAATTCTACTGCCACCAT
16188496 AGAGTTAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.35, G:0.10, T:0.31
Consensus pattern (24 bp):
TGCAACTAATTCTACTGCCACCAT
Done.