Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 78 of 427
Found at i:19458574 original size:23 final size:23
Alignment explanation
Indices: 19458536--19458590 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
19458526 TTGAATTGAA
19458536 GATTTGAA-A-CTTCGAATATTT
1 GATTTGAAGATCTTCGAATATTT
*
19458557 TATTTGAAGATCTTCGAATATTT
1 GATTTGAAGATCTTCGAATATTT
*
19458580 GAATTGAAGAT
1 GATTTGAAGAT
19458591 TTGAAACTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 7 0.24
22 1 0.03
23 21 0.72
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (23 bp):
GATTTGAAGATCTTCGAATATTT
Found at i:19459013 original size:16 final size:17
Alignment explanation
Indices: 19458975--19459015 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
19458965 AAGCATTAAA
*
19458975 ATAATATATAAAATTAT
1 ATAATATATAAAATAAT
19458992 -TAA-ATATTAAAATAAT
1 ATAATATA-TAAAATAAT
19459008 ATAATATA
1 ATAATATA
19459016 AATATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
15 3 0.15
16 11 0.55
17 3 0.15
18 3 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAATATATAAAATAAT
Found at i:19459395 original size:21 final size:21
Alignment explanation
Indices: 19459380--19459418 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
19459370 TTTTTATTTA
19459380 TCAAAATTACATTTTTTTAAC
1 TCAAAATTACATTTTTTTAAC
19459401 TCAAAATT--ATTTTTTTAA
1 TCAAAATTACATTTTTTTAA
19459419 TGTACCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (21 bp):
TCAAAATTACATTTTTTTAAC
Found at i:19460737 original size:31 final size:32
Alignment explanation
Indices: 19460699--19460773 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 32
19460689 GTATAATAGG
* *
19460699 CCCACATGCCCA-TGTGGCTTGCCTATGTTGA
1 CCCACATGCCCAGTATGGCTTGCCCATGTTGA
*
19460730 CCCACATG-CCAGTATGGCTTGCCCATGTTGG
1 CCCACATGCCCAGTATGGCTTGCCCATGTTGA
*
19460761 CCCACACGCCCAG
1 CCCACATGCCCAG
19460774 ATTGGCCTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 3 0.08
31 31 0.82
32 4 0.11
ACGTcount: A:0.17, C:0.37, G:0.23, T:0.23
Consensus pattern (32 bp):
CCCACATGCCCAGTATGGCTTGCCCATGTTGA
Found at i:19462674 original size:44 final size:44
Alignment explanation
Indices: 19462626--19462718 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 44
19462616 GAAATATTGA
* *
19462626 ATAGGAAAGGTAAGATAGGTGGAAAACGATTATAAAATTTGAAG
1 ATAGGAAAGGTAAGATAAGTGGAAAACGACTATAAAATTTGAAG
*
19462670 ATAGGAATGGTAAGATAAGTGGAAAACGACTATAAAATTTGAAG
1 ATAGGAAAGGTAAGATAAGTGGAAAACGACTATAAAATTTGAAG
19462714 ATAGG
1 ATAGG
19462719 CGGATTTGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.47, C:0.03, G:0.27, T:0.23
Consensus pattern (44 bp):
ATAGGAAAGGTAAGATAAGTGGAAAACGACTATAAAATTTGAAG
Found at i:19462772 original size:66 final size:66
Alignment explanation
Indices: 19462659--19462879 Score: 279
Period size: 66 Copynumber: 3.3 Consensus size: 66
19462649 AAACGATTAT
*
19462659 AAAATTTGAAGATAGGAATGGTAAGATA-AGTGGAAAACGACTATAAAATTTGAAGATAGGCGGA
1 AAAATTTG-A-ATAGGAATGGTAAGATAGA-TGGAAAAAGACTATAAAATTTGAAGATAGGCGGA
19462723 TTTG
63 TTTG
* * * * *
19462727 AAAATTTGATTAGGGATGGTAAGATAGATGGAAAAAGAATGTAAAATTTAAAGATA-GCAGG-TT
1 AAAATTTGAATAGGAATGGTAAGATAGATGGAAAAAGACTATAAAATTTGAAGATAGGC-GGATT
19462790 TG
65 TG
* * *
19462792 AAAATTTGAGTAGGAATGGTAAGATAGGT-GAAAAACGACTATAAAATTTGAAGATAGACGGATT
1 AAAATTTGAATAGGAATGGTAAGATAGATGGAAAAA-GACTATAAAATTTGAAGATAGGCGGATT
19462856 TG
65 TG
*
19462858 AAAATTTGAATAGGGATGGTAA
1 AAAATTTGAATAGGAATGGTAA
19462880 AATGACTAAG
Statistics
Matches: 133, Mismatches: 15, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
64 6 0.05
65 51 0.38
66 66 0.50
67 2 0.02
68 8 0.06
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (66 bp):
AAAATTTGAATAGGAATGGTAAGATAGATGGAAAAAGACTATAAAATTTGAAGATAGGCGGATTT
G
Found at i:19471189 original size:39 final size:39
Alignment explanation
Indices: 19471124--19471268 Score: 218
Period size: 39 Copynumber: 3.7 Consensus size: 39
19471114 CCCGCATAAA
* * *
19471124 TGCCTTCGGGACTTAACCCGGATATCACAACTTGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAGCTCGCACAAT
* *
19471164 TGCCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAAT
* *
19471203 TGCCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAAT
19471242 TGCCTTCGGGCTTAGCCCGGATATCAC
1 TGCCTTCGGGCTTAGCCCGGATATCAC
19471269 TCGAACATTC
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.90
40 10 0.10
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAAT
Found at i:19474216 original size:40 final size:40
Alignment explanation
Indices: 19474131--19474281 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
19474121 AATTGAATGA
* * * *
19474131 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
19474171 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
19474212 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
19474251 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
19474282 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:19474295 original size:40 final size:40
Alignment explanation
Indices: 19474168--19474297 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
19474158 ATGCTGGAAA
* * *
19474168 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
19474208 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
19474248 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
19474288 TTATATCCGG
1 TTATATCCGG
19474298 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:19474296 original size:80 final size:80
Alignment explanation
Indices: 19474130--19474297 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
19474120 AAATTGAATG
* *
19474130 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
19474195 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
19474210 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
19474273 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
19474290 ATATCCGG
1 ATATCCGG
19474298 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:19480413 original size:40 final size:40
Alignment explanation
Indices: 19480328--19480478 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
19480318 AATTGAATGA
* * * *
19480328 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
19480368 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
19480409 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
19480448 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
19480479 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:19480492 original size:40 final size:40
Alignment explanation
Indices: 19480365--19480494 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
19480355 ATGCTGGAAA
* * *
19480365 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
19480405 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
19480445 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
19480485 TTATATCCGG
1 TTATATCCGG
19480495 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:19480493 original size:80 final size:80
Alignment explanation
Indices: 19480327--19480494 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
19480317 AAATTGAATG
* *
19480327 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
19480392 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
19480407 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
19480470 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
19480487 ATATCCGG
1 ATATCCGG
19480495 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:19486236 original size:46 final size:48
Alignment explanation
Indices: 19486114--19486243 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 48
19486104 TGTAACCCGC
*
19486114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAG-T-CAT
* * *
19486164 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
19486207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
19486244 TGCCCAAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 32 0.45
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
Found at i:19490778 original size:40 final size:39
Alignment explanation
Indices: 19490734--19490874 Score: 138
Period size: 39 Copynumber: 3.6 Consensus size: 39
19490724 GTTCAAAACA
* ** * *
19490734 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CATAGCCCGGATATAATAACTCGCACAATTG
* * * * *
19490774 CCTTCGGGAATTAACCCGGATATCACAACTCGCACAATTA
1 CCTTCGGGCA-TAGCCCGGATATAATAACTCGCACAATTG
* * *
19490814 CCTTCGGGCTTAGCCCGGGTATAATAGCTCGCACAATTG
1 CCTTCGGGCATAGCCCGGATATAATAACTCGCACAATTG
*
19490853 CCTTCGGGCTTAGCCCGGATAT
1 CCTTCGGGCATAGCCCGGATAT
19490875 CACTCGAACA
Statistics
Matches: 82, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 45 0.55
40 37 0.45
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCATAGCCCGGATATAATAACTCGCACAATTG
Found at i:19492779 original size:67 final size:68
Alignment explanation
Indices: 19492704--19492830 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
19492694 TTTAATAGAT
* * * *
19492704 TTAATATTAAATTTAATTTGATACTTATATTGAT-AGTATTTTGTTAATTTAATATTAAAGTATT
1 TTAATATTAAATTTAATCTAATACTTATATTGATAAGTATTATATTAATTTAATATTAAAGTATT
19492768 ATC
66 ATC
* * *
19492771 TTAATATTAAATTTAATCTAATATTTATCTTGATAAGTGTTATATTAATTTAATATTAAA
1 TTAATATTAAATTTAATCTAATACTTATATTGATAAGTATTATATTAATTTAATATTAAA
19492831 ATGATTAAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 30 0.58
68 22 0.42
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.51
Consensus pattern (68 bp):
TTAATATTAAATTTAATCTAATACTTATATTGATAAGTATTATATTAATTTAATATTAAAGTATT
ATC
Found at i:19502026 original size:4 final size:5
Alignment explanation
Indices: 19501995--19502041 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
19501985 TAGGAAGATA
*
19501995 TTATT TTATT TTCATT TT-TGT TTTTAT TTATT TTATT TTATT TTATT
1 TTATT TTATT TT-ATT TTAT-T TTAT-T TTATT TTATT TTATT TTATT
19502042 AAATTAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
4 1 0.03
5 26 0.70
6 10 0.27
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:19502623 original size:15 final size:14
Alignment explanation
Indices: 19502598--19502668 Score: 63
Period size: 15 Copynumber: 4.9 Consensus size: 14
19502588 ATTCTAATAT
*
19502598 TATTATTATTTATC
1 TATTTTTATTTATC
19502612 TAATTTTTATTTATC
1 T-ATTTTTATTTATC
* *
19502627 TATTTATATTTCTAC
1 TATTTTTATTTAT-C
*
19502642 TATTATTATATT-TC
1 TATTTTTAT-TTATC
*
19502656 TATTTCTATTTAT
1 TATTTTTATTTAT
19502669 ATACTAATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
13 2 0.04
14 20 0.43
15 22 0.48
16 2 0.04
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTTTTATTTATC
Found at i:19502636 original size:29 final size:29
Alignment explanation
Indices: 19502604--19502669 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
19502594 ATATTATTAT
*
19502604 TATTTAT-CTAATTTTTAT-TTATCTATTTA
1 TATTTATACT-ATTATTATATT-TCTATTTA
* *
19502633 TATTTCTACTATTATTATATTTCTATTTC
1 TATTTATACTATTATTATATTTCTATTTA
19502662 TATTTATA
1 TATTTATA
19502670 TACTAATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 27 0.87
30 4 0.13
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (29 bp):
TATTTATACTATTATTATATTTCTATTTA
Found at i:19502807 original size:3 final size:3
Alignment explanation
Indices: 19502799--19502915 Score: 97
Period size: 3 Copynumber: 39.7 Consensus size: 3
19502789 TTTAAAACTT
*
19502799 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA -TA TT- TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
19502843 TGTA TTA -TA TT- TCTA TTTA TGT- TTA TGTA TTA ATA TCA TTA -TA
1 T-TA TTA TTA TTA T-TA -TTA T-TA TTA T-TA TTA TTA TTA TTA TTA
19502886 TT- TTA -TA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
19502916 TATATAGTAT
Statistics
Matches: 94, Mismatches: 7, Indels: 26
0.74 0.06 0.20
Matches are distributed among these distances:
2 13 0.14
3 70 0.74
4 10 0.11
5 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:19504083 original size:26 final size:26
Alignment explanation
Indices: 19504047--19504097 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19504037 AAAGAAAGTC
19504047 AAGCTGCAAATTGATTATTTTCTGTA
1 AAGCTGCAAATTGATTATTTTCTGTA
19504073 AAGCTGCAAATTGATTATTTTCTGT
1 AAGCTGCAAATTGATTATTTTCTGT
19504098 CTTTTTGTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (26 bp):
AAGCTGCAAATTGATTATTTTCTGTA
Found at i:19509460 original size:46 final size:46
Alignment explanation
Indices: 19509355--19509466 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 46
19509345 TCAATTGATT
* *
19509355 GAAGAAGCCATAAATCTTATACCTCTAAGTTGCAGTGGGATAGATT
1 GAAGAAGCCACAAATCTTATACCTCTAAGTTGCAGTGGGATAGATA
* ** * *
19509401 GAAGATGTTACAAATCTTGTACC-CTTGAGTTGCAGTGGGATAGATA
1 GAAGAAGCCACAAATCTTATACCTC-TAAGTTGCAGTGGGATAGATA
* *
19509447 GAAGAAACCACAAATTTTAT
1 GAAGAAGCCACAAATCTTAT
19509467 CTCCCTGAAG
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 1 0.02
46 51 0.98
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (46 bp):
GAAGAAGCCACAAATCTTATACCTCTAAGTTGCAGTGGGATAGATA
Found at i:19509907 original size:44 final size:45
Alignment explanation
Indices: 19509803--19510061 Score: 220
Period size: 45 Copynumber: 5.8 Consensus size: 45
19509793 AATCGACAGA
** ** * *
19509803 TCTTATCTC-CTTGAAGTTACAGCGGAATAGATTGAAGATAGCAAA
1 TCTTATCTCTC-TGAAGTTACAGTAGAGCAGGTTGAAGATAGCAAG
*
19509848 CCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAG-TAGCAAG
1 TCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGATAGCAAG
* * * * **
19509892 TCTTATCTTTTTGAAGTTGCAGTGGAGCAGACTGAAGATAGC-AG
1 TCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGATAGCAAG
* * * ** * * *
19509936 ATCTTATCTCCCTGAAGTTACAGCAAAATAGATCGAAGATAGCAAA
1 -TCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGATAGCAAG
* * *
19509982 CCTTATCTCTCTGAAGTTAAAGTAGAGCAGGTTAAAG-TAGCAAG
1 TCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGATAGCAAG
* * * *
19510026 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAA
1 TCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAA
19510062 ATTACCAACT
Statistics
Matches: 166, Mismatches: 44, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
44 73 0.44
45 91 0.55
46 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTTATCTCTCTGAAGTTACAGTAGAGCAGGTTGAAGATAGCAAG
Found at i:19509954 original size:89 final size:89
Alignment explanation
Indices: 19509802--19510265 Score: 266
Period size: 89 Copynumber: 5.2 Consensus size: 89
19509792 AAATCGACAG
* * ** * *
19509802 ATCTTATCTCCTTGAAGTTACAGCGGAATAGATTGAAGATAGCAAACCTTATCTCTCTGAAGTTA
1 ATCTTATCTCTTTGAAGTTACAGTGGAGCAGATTGAAGATAGC-AATCTTATCTCCCTGAAGTTA
*
19509867 CAGTAGAGCAGGTTGAAG-TAGCAA
65 CAGTAGAGTAGGTTGAAGATAGCAA
* * * *
19509891 GTCTTATCTTTTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTA
1 ATCTTATCTCTTTGAAGTTACAGTGGAGCAGATTGAAGATAGCA-ATCTTATCTCCCTGAAGTTA
* * * * *
19509956 CAGCAAAATAGATCGAAGATAGCAA
65 CAGTAGAGTAGGTTGAAGATAGCAA
* * * * * * *
19509981 ACCTTATCTCTCTGAAGTTAAAGTAGAGCAGGTTAAAG-TAGCAAGTCTTATCTCCCTGAAGTTG
1 ATCTTATCTCTTTGAAGTTACAGTGGAGCAGATTGAAGATAGCAA-TCTTATCTCCCTGAAGTTA
* *
19510045 CAGTGGAGTAGGTTGAA-ATTACCAA
65 CAGTAGAGTAGGTTGAAGA-TAGCAA
* * * * * * ** * *
19510070 CTCTTACCTCCTTGAAGTTCCAGCGGAGTAGATCAAAGCTA-CAAATCTCT-TCTCCCTGAAATT
1 ATCTTATCTCTTTGAAGTTACAGTGGAGCAGATTGAAGATAGC-AATCT-TATCTCCCTGAAGTT
* * * * * *
19510133 ACATTGGAGCAGATCGAAG-T--CACG
64 ACAGTAGAGTAGGTTGAAGATAGCA-A
* * * ** * *
19510157 ATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAG-TA-CAAGCCTTATTTCCCTGAAGT
1 AT-CTTATCTCTTTGAAGTTACAGTGGAGCA-GATTGAAGATAGCAA-TCTTATCTCCCTGAAGT
* * * *
19510220 TGCAGTGGAGCAGGTTGAA-ATTACCAA
63 TACAGTAGAGTAGGTTGAAGA-TAGCAA
* *
19510247 TTCTTATCTCCTTGAAGTT
1 ATCTTATCTCTTTGAAGTT
19510266 TCAGCAGAGT
Statistics
Matches: 285, Mismatches: 73, Indels: 34
0.73 0.19 0.09
Matches are distributed among these distances:
86 2 0.01
87 4 0.01
88 55 0.19
89 182 0.64
90 40 0.14
91 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCTTATCTCTTTGAAGTTACAGTGGAGCAGATTGAAGATAGCAATCTTATCTCCCTGAAGTTAC
AGTAGAGTAGGTTGAAGATAGCAA
Found at i:19510087 original size:45 final size:45
Alignment explanation
Indices: 19509849--19510265 Score: 192
Period size: 44 Copynumber: 9.4 Consensus size: 45
19509839 GATAGCAAAC
* * * * * *
19509849 CTTATCTCTCTGAAGTTACAGTAGAGCAGGTTG-AAGTAGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACT
*** ** *
19509893 CTTATCTTTTTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAGA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-ATTACCA-ACT
* *** ** * * *
19509938 CTTATCTCCCTGAAGTTACAGCAAAATAGATCGAAGA-TAGCAAAC-
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-ATTA-CCAACT
* ** * * * *
19509983 CTTATCTCTCTGAAGTTAAAGTAGAGCAGGTT-AAAGTAGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACT
*
19510027 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAATTACCAACT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACT
* * * * * * * * *
19510072 CTTACCTCCTTGAAGTTCCAGCGGAGTA-GATCAAAGCTA-CAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAA-TTACCAACT
* * * * * * * * *
19510116 CTCT-TCTCCCTGAAATTACATTGGAGCAGATCGAAGTCACGATC-
1 CT-TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACT
* * * * *
19510160 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAGTA-CAAGC-
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAA-CT
* *
19510204 CTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACT
*
19510249 CTTATCTCCTTGAAGTT
1 CTTATCTCCCTGAAGTT
19510266 TCAGCAGAGT
Statistics
Matches: 271, Mismatches: 86, Indels: 31
0.70 0.22 0.08
Matches are distributed among these distances:
43 5 0.02
44 146 0.54
45 117 0.43
46 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACT
Found at i:19510102 original size:134 final size:134
Alignment explanation
Indices: 19509799--19510103 Score: 434
Period size: 134 Copynumber: 2.3 Consensus size: 134
19509789 GGTAAATCGA
*
19509799 CAGATCTTATCTCCTTGAAGTTACAGCGGAATAGATTGAAGATAGCAAACCTTATCTCTCTGAAG
1 CAGATCTTATCTCCTTGAAGTTACAGCGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAG
* * ***
19509864 TTACAGTAGAGCAGGTTGAAGTAGCAAGTCTTATCTTTTTGAAGTTGCAGTGGAGCAGACTGAAG
66 TTAAAGTAGAGCAGGTTAAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
*
19509929 ATAG
131 ATAC
* **
19509933 CAGATCTTATCTCCCTGAAGTTACAGCAAAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAG
1 CAGATCTTATCTCCTTGAAGTTACAGCGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAG
* **
19509998 TTAAAGTAGAGCAGGTTAAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAA-
66 TTAAAGTAGAGCAGGTTAAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
19510062 ATTAC
131 A-TAC
* * *
19510067 CA-ACTCTTACCTCCTTGAAGTTCCAGCGGAGTAGATC
1 CAGA-TCTTATCTCCTTGAAGTTACAGCGGAATAGATC
19510104 AAAGCTACAA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
133 2 0.01
134 148 0.99
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (134 bp):
CAGATCTTATCTCCTTGAAGTTACAGCGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAG
TTAAAGTAGAGCAGGTTAAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
ATAC
Found at i:19510216 original size:177 final size:177
Alignment explanation
Indices: 19509982--19510328 Score: 543
Period size: 177 Copynumber: 2.0 Consensus size: 177
19509972 AGATAGCAAA
* *
19509982 CCTTATCTCTCTGAAGTTAAAGTAGAGCAGGTTAAAGTAGCAAGTCTTATCTCCCTGAAGTTGCA
1 CCTTATCTCTCTGAAGTTAAAGTAGAGCAGGTAAAAGTAGCAAGCCTTATCTCCCTGAAGTTGCA
* *
19510047 GTGGAGTAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTTCCAGCGGAGTAGATCAAAGCTAC
66 GTGGAGCAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTTCCAGCAGAGTAGATCAAAGCTAC
*
19510112 AAATCTCTTCTCCCTGAAATTACATTGGAGCAGATCGAAGTCACGAT
131 AAATCTCTTCTCCCTAAAATTACATTGGAGCAGATCGAAGTCACGAT
** *
19510159 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAGTA-CAAGCCTTATTTCCCTGAAGTTGC
1 CCTTATCTCTCTGAAGTTAAAGTAGAGCAGG-TAAAAGTAGCAAGCCTTATCTCCCTGAAGTTGC
* * * *
19510223 AGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTA
65 AGTGGAGCAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTTCCAGCAGAGTAGATCAAAGCTA
* * *
19510288 CAAATCTCTTTTCCCTAAAATTACATTGGAGCGGATTGAAG
130 CAAATCTCTTCTCCCTAAAATTACATTGGAGCAGATCGAAG
19510329 CACCAATTCT
Statistics
Matches: 154, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
177 147 0.95
178 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (177 bp):
CCTTATCTCTCTGAAGTTAAAGTAGAGCAGGTAAAAGTAGCAAGCCTTATCTCCCTGAAGTTGCA
GTGGAGCAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTTCCAGCAGAGTAGATCAAAGCTAC
AAATCTCTTCTCCCTAAAATTACATTGGAGCAGATCGAAGTCACGAT
Found at i:19510301 original size:89 final size:89
Alignment explanation
Indices: 19510033--19510303 Score: 289
Period size: 89 Copynumber: 3.1 Consensus size: 89
19510023 AAGTCTTATC
* * * *
19510033 TCCCTGAAGTTGCAGTGGAGTAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTTCCAGCGGAG
1 TCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCAGAG
*
19510098 TAGATCAAAGCTACAAATCTCTTC
66 TAGATCAAAGCTACAAATCTCTTT
* * * * * * * * * * *
19510122 TCCCTGAAATTACATTGGAGCAGATCGAAGTCA-CGATCCTTATCT-CTCTGAAGTTGCAGTAGA
1 TCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCT-TGAAGTTCCAGCAGA
* * **
19510185 GCAGGATAAAAG-TACAAGCCT-TATT
65 GTA-GATCAAAGCTACAAATCTCT-TT
*
19510210 TCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTTCAGCAGAG
1 TCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCAGAG
*
19510275 TAGATCGAAGCTACAAATCTCTTT
66 TAGATCAAAGCTACAAATCTCTTT
19510299 TCCCT
1 TCCCT
19510304 AAAATTACAT
Statistics
Matches: 139, Mismatches: 36, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
87 3 0.02
88 62 0.45
89 71 0.51
90 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (89 bp):
TCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTCCAGCAGAG
TAGATCAAAGCTACAAATCTCTTT
Found at i:19510694 original size:5 final size:5
Alignment explanation
Indices: 19510684--19510736 Score: 54
Period size: 5 Copynumber: 10.0 Consensus size: 5
19510674 TAGGAAGATA
*
19510684 TTATT TTATTT TTATT TT-TGT TTTTAT TTATTT TTATT TTATT TTATT
1 TTATT TTA-TT TTATT TTAT-T TTAT-T TTA-TT TTATT TTATT TTATT
19510732 TTATT
1 TTATT
19510737 AAATTAGTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
4 1 0.02
5 27 0.64
6 13 0.31
7 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:19510698 original size:6 final size:6
Alignment explanation
Indices: 19510687--19510733 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
19510677 GAAGATATTA
*
19510687 TTTTAT TTTTAT TTTTGT TTTTA- -TTTAT TTTTA- TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
19510731 TTT
1 TTT
19510734 ATTAAATTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
4 4 0.11
5 10 0.28
6 22 0.61
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:19510715 original size:16 final size:16
Alignment explanation
Indices: 19510684--19510733 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
19510674 TAGGAAGATA
19510684 TTATTTTATTTTTATTT
1 TTATTTTA-TTTTATTT
*
19510701 TTGTTTT-TATTTATTT
1 TTATTTTAT-TTTATTT
19510717 TTATTTTATTTTATTT
1 TTATTTTATTTTATTT
19510733 T
1 T
19510734 ATTAAATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 1 0.03
16 21 0.72
17 7 0.24
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (16 bp):
TTATTTTATTTTATTT
Found at i:19515744 original size:18 final size:18
Alignment explanation
Indices: 19515721--19515758 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
19515711 AATATATATT
19515721 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
19515739 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
19515757 AA
1 AA
19515759 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:19515751 original size:13 final size:13
Alignment explanation
Indices: 19515735--19515759 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19515725 CAAGTACCCA
19515735 ACCCAACCCAATT
1 ACCCAACCCAATT
19515748 ACCCAACCCAAT
1 ACCCAACCCAAT
19515760 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:19515797 original size:5 final size:6
Alignment explanation
Indices: 19515784--19515836 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
19515774 ATAATTTAAT
* * *
19515784 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AACTAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
19515834 AAA
1 AAA
19515837 ACATATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 36 0.88
8 5 0.12
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:19515838 original size:26 final size:25
Alignment explanation
Indices: 19515787--19515835 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
19515777 ATTTAATAAA
19515787 TAAAAATAAAAATCTAAAACTAAAAC
1 TAAAAATAAAAA-CTAAAACTAAAAC
19515813 TAAAAATAAAAA-TAAAACTAAAA
1 TAAAAATAAAAACTAAAACTAAAA
19515836 AACATATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.48
26 12 0.52
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.18
Consensus pattern (25 bp):
TAAAAATAAAAACTAAAACTAAAAC
Found at i:19515870 original size:9 final size:9
Alignment explanation
Indices: 19515856--19515941 Score: 109
Period size: 9 Copynumber: 9.6 Consensus size: 9
19515846 TTTATACAAA
*
19515856 TAATTCGAT
1 TAATTCGGT
19515865 TAATTCGGT
1 TAATTCGGT
* *
19515874 TAATTTGGG
1 TAATTCGGT
*
19515883 TAATTCGGG
1 TAATTCGGT
*
19515892 TAATTCAGT
1 TAATTCGGT
**
19515901 TAATTCAAT
1 TAATTCGGT
19515910 TAATTCGGT
1 TAATTCGGT
19515919 TAATTCGGT
1 TAATTCGGT
19515928 TAATTCGGT
1 TAATTCGGT
19515937 TAATT
1 TAATT
19515942 TTTTACTTAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:19517901 original size:16 final size:16
Alignment explanation
Indices: 19517880--19517912 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
19517870 AAATAAAGTA
19517880 AAATAACAAAAGAAAC
1 AAATAACAAAAGAAAC
*
19517896 AAATAAGAAAAGAAAC
1 AAATAACAAAAGAAAC
19517912 A
1 A
19517913 GAGACTATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.09, G:0.09, T:0.06
Consensus pattern (16 bp):
AAATAACAAAAGAAAC
Found at i:19518965 original size:23 final size:23
Alignment explanation
Indices: 19518907--19518997 Score: 92
Period size: 23 Copynumber: 4.0 Consensus size: 23
19518897 CACTGAGTGC
*
19518907 TGTTTTGGTGTGCTTGGGTGGAT
1 TGTTTTGGTGTGTTTGGGTGGAT
* *
19518930 TTTTTTGATGTGTTTGGGTGGAT
1 TGTTTTGGTGTGTTTGGGTGGAT
* * *
19518953 TGTTCTGGTGTGTTTAGTTGGAT
1 TGTTTTGGTGTGTTTGGGTGGAT
* ** *
19518976 TATTTCAGTGTGTTTGGTTGGA
1 TGTTTTGGTGTGTTTGGGTGGA
19518998 ATCCGTGTAT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.09, C:0.03, G:0.36, T:0.52
Consensus pattern (23 bp):
TGTTTTGGTGTGTTTGGGTGGAT
Found at i:19520215 original size:27 final size:27
Alignment explanation
Indices: 19520177--19520232 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
19520167 ACTAAATTGC
*
19520177 GTAAAAGTTGCATTCTACTTGTTAAAA
1 GTAAAAGTTGCATTCTACTAGTTAAAA
19520204 GTAAAAGTTGCATTCTACTAGTTAAAA
1 GTAAAAGTTGCATTCTACTAGTTAAAA
19520231 GT
1 GT
19520233 GTCTAATCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (27 bp):
GTAAAAGTTGCATTCTACTAGTTAAAA
Found at i:19523840 original size:20 final size:20
Alignment explanation
Indices: 19523803--19523840 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
19523793 TGATGGGGAG
*
19523803 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
19523823 CAAGAA-ATCAAAGCTGGA
1 CAAGAATATC-AAGCTGGA
19523841 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:19525863 original size:46 final size:46
Alignment explanation
Indices: 19525788--19526133 Score: 537
Period size: 46 Copynumber: 7.7 Consensus size: 46
19525778 GGCAACCTGA
*
19525788 GTGTAAGTCCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
* *
19525834 GTGTGAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
*
19525880 GTGTAAGACCATGGTTGAAAGTTACCATGGCAACC-----TG--A-
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
*
19525918 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
19525964 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
* *
19526010 GTGTAAGACCATGGTTGAAAGATACCATAGCAACTTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
*
19526056 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
***
19526102 GAACAAGACCATGGTTGAAAGATACCATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
19526134 TCATGTCAAA
Statistics
Matches: 277, Mismatches: 15, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
38 34 0.12
39 1 0.00
41 2 0.01
43 1 0.00
45 1 0.00
46 238 0.86
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
Found at i:19525974 original size:130 final size:130
Alignment explanation
Indices: 19525741--19526133 Score: 615
Period size: 130 Copynumber: 3.0 Consensus size: 130
19525731 GTGCTCTCTG
*
19525741 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGTCCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTTGA
*
19525806 AAGATACCATGGCAACCTGATATGAAATGTGTGAGACCATGGTTGAAAGATACCATGGCAACCTA
66 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
*
19525871 ATATGAAATGTGTAAGACCATGGTTGAAAGTTACCATGGCAACCTGAGTGTAAGACCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTTGA
* *
19525936 AAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
* *
19526001 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACTTGATATGAAATGTGTAAGACC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC-----CTG--A-GTGTAAGACC
* ***
19526066 ATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATG
58 ATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATG
19526131 GCA
123 GCA
19526134 TCATGTCAAA
Statistics
Matches: 242, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
130 166 0.69
135 2 0.01
137 1 0.00
138 73 0.30
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (130 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTTGA
AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
Found at i:19526036 original size:176 final size:168
Alignment explanation
Indices: 19525750--19526089 Score: 554
Period size: 176 Copynumber: 2.0 Consensus size: 168
19525740 GATATGAAAT
*
19525750 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGTCCATGGTTGAAAGATACCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTTGAAAGATACCA
* *
19525815 TGGCAACCTGATATGAAATGTGTGAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAAT
66 TGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTAATATGAAAT
*
19525880 GTGTAAGACCATGGTTGAAAGTTACCATGGCAACCTGA
131 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
19525918 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG-------A-GTGTAAGACCATGGTTGAA
* *
19525983 AGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACTTGA
58 AGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTAA
19526048 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
123 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
19526090 GTGATATGAA
Statistics
Matches: 158, Mismatches: 6, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
168 37 0.23
175 1 0.01
176 120 0.76
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (168 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTTGAAAGATACCA
TGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTAATATGAAAT
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
Found at i:19528088 original size:8 final size:8
Alignment explanation
Indices: 19528046--19528070 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
19528036 ATATAGACTA
19528046 AATAAAAT
1 AATAAAAT
19528054 AATAAAAT
1 AATAAAAT
19528062 AATAAAAT
1 AATAAAAT
19528070 A
1 A
19528071 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:19544844 original size:23 final size:23
Alignment explanation
Indices: 19544818--19544886 Score: 111
Period size: 23 Copynumber: 3.0 Consensus size: 23
19544808 TGTAAAGGTA
*
19544818 GTAAATGAGGAGGAAAAAGAGGG
1 GTAAATGAGGAGGAAAAAAAGGG
*
19544841 GTAAATGGGGAGGAAAAAAAGGG
1 GTAAATGAGGAGGAAAAAAAGGG
*
19544864 GTAAATGAGGAGGAAAAGAAGGG
1 GTAAATGAGGAGGAAAAAAAGGG
19544887 TGTTAGGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.43, T:0.09
Consensus pattern (23 bp):
GTAAATGAGGAGGAAAAAAAGGG
Found at i:19545230 original size:24 final size:24
Alignment explanation
Indices: 19545202--19545254 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
19545192 TTAGTAAGTC
* *
19545202 AAATAAAATATGCTAATAAATGCT
1 AAATAAAATATACTAATAAATACT
* *
19545226 AAATATATTATACTAATAAATACT
1 AAATAAAATATACTAATAAATACT
19545250 AAATA
1 AAATA
19545255 TTCTAGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATAAAATATACTAATAAATACT
Found at i:19547158 original size:24 final size:24
Alignment explanation
Indices: 19547130--19547182 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
19547120 TTAGTAAGTC
* *
19547130 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
19547154 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
19547178 AAATA
1 AAATA
19547183 TTCTAGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:19547870 original size:268 final size:266
Alignment explanation
Indices: 19547384--19547923 Score: 764
Period size: 268 Copynumber: 2.0 Consensus size: 266
19547374 AGTATAATAA
**
19547384 AAATATGTGAGACTCATTATAATAAGAATATATATAATACTTTTCTAGTTAATATGTTAATTAAA
1 AAATATGTGAGACTCATTATAATAAGAATATATATAATACTTTTCTAGTTAATATACTAATTAAA
* * * * *
19547449 TTAAAAATATTTTTAAAAAAATTAATTTTAATTATAAATTAATAAATATATGTGTGACTCAATTT
66 TTAAAAAAAATTTT-AAAAAATTAAATTTAATTATAAATTAATAAATATATGTGTGACCCAAATT
* * * *
19547514 CTTGTTAAATAAAATAAGACATTATTTGCAAGTCAAGTTAAACAAAATACATTTTCTTTCTAGAA
130 CTTATTAAATAAAATAAGACATTACTTGCAAGTCAAGTTAAACAAAATACACTTTCTTTATAGAA
* * * *
19547579 AGTTTAGTATTTATTAGTATAATATATTTTA-CATTTATTAGCATAATTTATTTGACCTATGAAT
195 AGTTTAGTATCTATTAATATAATATA-TTTAGCATTTATTAGCATAATTTATTTAACCTACGAA-
19547643 TTAATCTAT
258 TTAATCTAT
* *
19547652 AAATATGTGAGACTCATTATAATAAGAATATATATGTAATA-TTTGTCTAGTTAATGTACTCATT
1 AAATATGTGAGACTCATTATAATAAGAATATATA--TAATACTTT-TCTAGTTAATATACTAATT
* * *
19547716 ATATTAAAAAAAATTTT-AAAATTTAAATTTAATTATAAATTAATAAATATATGTTTGACCCAAA
63 AAATTAAAAAAAATTTTAAAAAATTAAATTTAATTATAAATTAATAAATATATGTGTGACCCAAA
* *
19547780 TTCTTATTAAATAAAATAAGAGATTACTTGCAAGTCAAGTTAAACAAAATATACTTTCTTTATA-
128 TTCTTATTAAATAAAATAAGACATTACTTGCAAGTCAAGTTAAACAAAATACACTTTCTTTATAG
* *
19547844 AAAGATTTAGTATCTATTAATATAATATATTTAGTATTTATTAGTATAATTTATTTAACCTACGA
193 AAAG-TTTAGTATCTATTAATATAATATATTTAGCATTTATTAGCATAATTTATTTAACCTACGA
*
19547909 ATTAGTCTAT
257 ATTAATCTAT
19547919 AAATA
1 AAATA
19547924 GACACTTTTA
Statistics
Matches: 242, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
267 21 0.09
268 184 0.76
269 3 0.01
270 34 0.14
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (266 bp):
AAATATGTGAGACTCATTATAATAAGAATATATATAATACTTTTCTAGTTAATATACTAATTAAA
TTAAAAAAAATTTTAAAAAATTAAATTTAATTATAAATTAATAAATATATGTGTGACCCAAATTC
TTATTAAATAAAATAAGACATTACTTGCAAGTCAAGTTAAACAAAATACACTTTCTTTATAGAAA
GTTTAGTATCTATTAATATAATATATTTAGCATTTATTAGCATAATTTATTTAACCTACGAATTA
ATCTAT
Found at i:19547875 original size:24 final size:24
Alignment explanation
Indices: 19547848--19547900 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
19547838 TTTATAAAAG
19547848 ATTTAGTATCTATTAATATAATAT
1 ATTTAGTATCTATTAATATAATAT
* * *
19547872 ATTTAGTATTTATTAGTATAATTT
1 ATTTAGTATCTATTAATATAATAT
19547896 ATTTA
1 ATTTA
19547901 ACCTACGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (24 bp):
ATTTAGTATCTATTAATATAATAT
Found at i:19554974 original size:22 final size:22
Alignment explanation
Indices: 19554949--19555018 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
19554939 ATGCTTTGAC
19554949 TCCTGCTGGAACATGGTGCCAA
1 TCCTGCTGGAACATGGTGCCAA
* * *
19554971 TCCTGCTAG-AC-TCAGTG--AC
1 TCCTGCTGGAACAT-GGTGCCAA
19554990 TCCTGCTGGAACATGGTGCCAA
1 TCCTGCTGGAACATGGTGCCAA
19555012 TCCTGCT
1 TCCTGCT
19555019 AGACTCAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
19 9 0.24
20 6 0.16
21 6 0.16
22 16 0.43
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (22 bp):
TCCTGCTGGAACATGGTGCCAA
Found at i:19555002 original size:41 final size:41
Alignment explanation
Indices: 19554945--19555026 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
19554935 AAATATGCTT
19554945 TGACTCCTGCTGGAACATGGTGCCAATCCTGCTAGACTCAG
1 TGACTCCTGCTGGAACATGGTGCCAATCCTGCTAGACTCAG
19554986 TGACTCCTGCTGGAACATGGTGCCAATCCTGCTAGACTCAG
1 TGACTCCTGCTGGAACATGGTGCCAATCCTGCTAGACTCAG
19555027 GGTTTATGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.24
Consensus pattern (41 bp):
TGACTCCTGCTGGAACATGGTGCCAATCCTGCTAGACTCAG
Found at i:19556434 original size:33 final size:32
Alignment explanation
Indices: 19556396--19556469 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 32
19556386 TAAATATTAG
*
19556396 GATATTATCTTTTAGCAATTTGATTCATAATAA
1 GATATTATCTCTTAGCAATTTGATTCATAA-AA
*
19556429 GATATTATCTCTTAGCAATTTGATTCCTAAAA
1 GATATTATCTCTTAGCAATTTGATTCATAAAA
19556461 GAATATTAT
1 G-ATATTAT
19556470 ATGATATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 3 0.08
33 35 0.92
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.43
Consensus pattern (32 bp):
GATATTATCTCTTAGCAATTTGATTCATAAAA
Found at i:19558667 original size:14 final size:15
Alignment explanation
Indices: 19558650--19558682 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
19558640 AAGGAAGTTA
19558650 TTTTAGTTATTT-AT
1 TTTTAGTTATTTAAT
*
19558664 TTTTATTTATTTAAT
1 TTTTAGTTATTTAAT
19558679 TTTT
1 TTTT
19558683 CGTCCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTAGTTATTTAAT
Found at i:19560447 original size:36 final size:36
Alignment explanation
Indices: 19560396--19560468 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
19560386 TTTTCAAGAT
*
19560396 ATATGATAAACCTTCCACTGCTTCATTTGTGCTAGA
1 ATATGATAAACCTTCCACTGATTCATTTGTGCTAGA
* * * *
19560432 ATATGATGAATCTTCCATTGATTCATTTGTGGTAGA
1 ATATGATAAACCTTCCACTGATTCATTTGTGCTAGA
19560468 A
1 A
19560469 CTTCAACAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (36 bp):
ATATGATAAACCTTCCACTGATTCATTTGTGCTAGA
Found at i:19564576 original size:42 final size:43
Alignment explanation
Indices: 19564492--19564635 Score: 175
Period size: 43 Copynumber: 3.4 Consensus size: 43
19564482 TTTTTTAGAA
*
19564492 AAAAAACGCCGCTACAGATCAAGACCTTTAGCGGCGCTTTTTT
1 AAAAAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTTTT
* *
19564535 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCG-TTTTTT
1 AAAAAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTTTT
* * * * * *
19564577 TAGAAACGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTCCT
1 AAAAAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTT-TT
*
19564621 -GAAAACGCCGCTAAA
1 AAAAAACGCCGCTAAA
19564636 AATATGACCT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 36 0.41
43 50 0.57
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTTTT
Found at i:19570589 original size:22 final size:21
Alignment explanation
Indices: 19570564--19570626 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
19570554 CCTTAAACAA
*
19570564 TAAAACATAAACCCTTAACCCC
1 TAAAACTTAAACCC-TAACCCC
* *
19570586 TAAACCTTAAACCCCGATA-CCC
1 TAAAACTTAAA-CCCTA-ACCCC
19570608 TAAAACTTAAACCCTAACC
1 TAAAACTTAAACCCTAACC
19570627 TTTAACCCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 1 0.03
21 5 0.15
22 23 0.70
23 4 0.12
ACGTcount: A:0.43, C:0.37, G:0.02, T:0.19
Consensus pattern (21 bp):
TAAAACTTAAACCCTAACCCC
Found at i:19570648 original size:15 final size:15
Alignment explanation
Indices: 19570630--19570677 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
19570620 CCTAACCTTT
19570630 AACCCATAAACCATA
1 AACCCATAAACCATA
* *
19570645 AA-CCATAATCCCTA
1 AACCCATAAACCATA
19570659 AACCCATAATA-CATA
1 AACCCATAA-ACCATA
19570674 AACC
1 AACC
19570678 TTACAATAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (15 bp):
AACCCATAAACCATA
Found at i:19571097 original size:40 final size:40
Alignment explanation
Indices: 19571004--19571154 Score: 152
Period size: 40 Copynumber: 3.8 Consensus size: 40
19570994 ACAAAATTCT
**
19571004 TTAGCGGCACTTTTAGAAAA-CGCCGCTAAAGATCAAGTA
1 TTAGCGGCGTTTTTAGAAAAGCGCCGCTAAAGATCAAGTA
* *
19571043 TTAGCGGCGCTTTTTAGAAAAGCGCCGCTAAAGGTGTACA-TA
1 TTAGCGGCG-TTTTTAGAAAAGCGCCGCTAAAGAT-CA-AGTA
* *
19571085 -TAGCGGCGTTTTTAGAAAAGCGCCGCTAATA-CTCAA-TCT
1 TTAGCGGCGTTTTTAGAAAAGCGCCGCTAA-AGATCAAGT-A
*
19571124 TTAGCGACGTTTTTAG-AAAGCGCCGCTAAAG
1 TTAGCGGCGTTTTTAGAAAAGCGCCGCTAAAG
19571155 CCACCAAAGG
Statistics
Matches: 96, Mismatches: 8, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.03
39 22 0.23
40 46 0.48
41 21 0.22
42 3 0.03
43 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAGCGGCGTTTTTAGAAAAGCGCCGCTAAAGATCAAGTA
Found at i:19573471 original size:32 final size:32
Alignment explanation
Indices: 19573429--19573503 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 32
19573419 TACTCAATTG
* *
19573429 AATTTCCATACATACCTGTACCATCTCGTACC
1 AATTTTCATACATACATGTACCATCTCGTACC
19573461 AATTTTCATACATACATGTACCATCTCGTACC
1 AATTTTCATACATACATGTACCATCTCGTACC
*
19573493 AATTCTCATAC
1 AATTTTCATAC
19573504 TCAATCATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (32 bp):
AATTTTCATACATACATGTACCATCTCGTACC
Found at i:19573684 original size:56 final size:56
Alignment explanation
Indices: 19573547--19573688 Score: 162
Period size: 56 Copynumber: 2.5 Consensus size: 56
19573537 CAATGTCTCG
* * * * * *
19573547 CACACT-AGATGCCATACCCGATACCTCACACACTAAGTGCTATTATGGAAGTTTCA
1 CACACTAAG-TGCCATCCCCGATACTTCGCACACTAAATGCCATTATGGAAGTATCA
* * * *
19573603 TACACTAAGTGCCATCCTC-ATTACTTCGCACACTAAATGCCATTTTGGATGTATCA
1 CACACTAAGTGCCATCCCCGA-TACTTCGCACACTAAATGCCATTATGGAAGTATCA
19573659 CACACTAAGTGCCATCCCCGATACTTCGCA
1 CACACTAAGTGCCATCCCCGATACTTCGCA
19573689 GTTAAATGCC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
55 1 0.01
56 67 0.94
57 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (56 bp):
CACACTAAGTGCCATCCCCGATACTTCGCACACTAAATGCCATTATGGAAGTATCA
Found at i:19577629 original size:42 final size:42
Alignment explanation
Indices: 19577576--19577687 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 42
19577566 GACTTCTGTT
19577576 TTACGTGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAT-AGCATCGATATTTGA
* * * * * *
19577618 TTTCGTGTAAGACCCTATCTGGGACAGTGGCATTGATGTTTGA
1 TTACGTGTAAGACCATGTCTGGGACA-TAGCATCGATATTTGA
*
19577661 TTACGTGTAAGACCACGTCTGGGACAT
1 TTACGTGTAAGACCATGTCTGGGACAT
19577688 TGGCATTGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 29 0.50
43 29 0.50
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATAGCATCGATATTTGA
Found at i:19577673 original size:43 final size:41
Alignment explanation
Indices: 19577576--19577698 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 41
19577566 GACTTCTGTT
* * *
19577576 TTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACAT-GGCATTGTATTTGA
* * *
19577618 TTTCGTGTAAGACCCTATCTGGGACAGTGGCATTGATGTTTGA
1 TTACGTGTAAGACCCTGTCTGGGACA-TGGCATTG-TATTTGA
19577661 TTACGTGTAAGACCAC-GTCTGGGACATTGGCATTGTAT
1 TTACGTGTAAGACC-CTGTCTGGGACA-TGGCATTGTAT
19577699 ATCCTCTCTG
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 30 0.44
43 37 0.54
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (41 bp):
TTACGTGTAAGACCCTGTCTGGGACATGGCATTGTATTTGA
Found at i:19585447 original size:56 final size:56
Alignment explanation
Indices: 19585385--19585523 Score: 172
Period size: 56 Copynumber: 2.5 Consensus size: 56
19585375 TCCCATACAG
* * * *
19585385 GGTCTTACTCGCACACATATATC-AGAGTCATATATCAATGCCGACATATAAAACGT
1 GGTCTTACTCGCACACATATATCGA-AGTCACAAATCAATGCCAACATATAAAACAT
* * ** *
19585441 GGTCTTACTTGTACACATATATCGAAGTCACAAATTGATGCCAACGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACAAATCAATGCCAACATATAAAACAT
*
19585497 GGTCTTACTCACACACATATATCGAAG
1 GGTCTTACTCGCACACATATATCGAAG
19585524 CCATGGTCTT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
56 69 0.99
57 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACAAATCAATGCCAACATATAAAACAT
Found at i:19592763 original size:22 final size:22
Alignment explanation
Indices: 19592737--19592781 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
19592727 ATAATAAACA
19592737 TAGAAAATAATTTTTAAAATAT
1 TAGAAAATAATTTTTAAAATAT
*
19592759 TAGAAAATAATTTTTTAAATAT
1 TAGAAAATAATTTTTAAAATAT
19592781 T
1 T
19592782 TTTCTAACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
TAGAAAATAATTTTTAAAATAT
Found at i:19597071 original size:9 final size:10
Alignment explanation
Indices: 19597047--19597086 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
19597037 AGTTTATTTT
19597047 TAAAAATAAA
1 TAAAAATAAA
*
19597057 TAAAAATATA
1 TAAAAATAAA
*
19597067 T-AAAATTAA
1 TAAAAATAAA
19597076 TAAAAATAAA
1 TAAAAATAAA
19597086 T
1 T
19597087 CTAAAATGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:19615030 original size:21 final size:22
Alignment explanation
Indices: 19614984--19615030 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
19614974 CAGAACATAA
* *
19614984 TTCTTCTCTTTTCCTCTATATT
1 TTCTTCCCTTTTCATCTATATT
*
19615006 TTCTTCCCTTTTCAT-TATTTT
1 TTCTTCCCTTTTCATCTATATT
19615027 TTCT
1 TTCT
19615031 CATGATTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (22 bp):
TTCTTCCCTTTTCATCTATATT
Found at i:19622091 original size:24 final size:25
Alignment explanation
Indices: 19622032--19622093 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 25
19622022 TCGTTGTAAA
**
19622032 ATTTGCACTTTTGTGCTTATCATAATT
1 ATTTGCACTTCGGTGCTTATC--AATT
19622059 ATTTTGCACTTCGGTGCTTATC-ATT
1 A-TTTGCACTTCGGTGCTTATCAATT
19622084 ATTTGCACTT
1 ATTTGCACTT
19622094 TGTACTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 9 0.28
25 4 0.12
27 1 0.03
28 18 0.56
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (25 bp):
ATTTGCACTTCGGTGCTTATCAATT
Found at i:19625303 original size:5 final size:5
Alignment explanation
Indices: 19625293--19625320 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
19625283 TTATGTGTTC
19625293 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
19625321 CACAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:19626033 original size:5 final size:5
Alignment explanation
Indices: 19626023--19626058 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
19626013 TTATGTTTTA
*
19626023 ATTAT ATTAT ATTAT ATTCT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
19626059 AAACAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:19627336 original size:15 final size:15
Alignment explanation
Indices: 19627318--19627370 Score: 88
Period size: 15 Copynumber: 3.5 Consensus size: 15
19627308 TGATGAATTT
19627318 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
19627333 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
19627348 ATTGAATTTATATTG
1 ATTGAATTTATATTG
19627363 ATTGAATT
1 ATTGAATT
19627371 ATAAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:19627791 original size:21 final size:21
Alignment explanation
Indices: 19627756--19627851 Score: 111
Period size: 21 Copynumber: 4.5 Consensus size: 21
19627746 AGGCACTTTA
19627756 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
19627779 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
19627800 TGTATCGTATCAGGTACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
19627821 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
19627842 TGTGTCGTAT
1 TGTGTCGTAT
19627852 ACTGATCAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
21 54 0.86
23 9 0.14
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.38
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:19627850 original size:42 final size:42
Alignment explanation
Indices: 19627743--19627851 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
19627733 GGCTTTACTG
19627743 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
* ** * *
19627787 ATCAGGCACCTCGTGTATCGTATCAGGTACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
19627829 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
19627852 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 36 0.67
44 18 0.33
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.37
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:19632673 original size:29 final size:29
Alignment explanation
Indices: 19632617--19632673 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
19632607 TTATGGAAGA
* * * * *
19632617 GATGGAGAATTTGTTCGTTGAGAGTTCGC
1 GATGAAGAACTTGTTCATTAAGAATTCGC
19632646 GATGAAGAACTTGTTCATTAAGAATTCG
1 GATGAAGAACTTGTTCATTAAGAATTCG
19632674 TGTCAAGTGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTAAGAATTCGC
Found at i:19634605 original size:30 final size:30
Alignment explanation
Indices: 19634569--19634630 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
19634559 AAGAGGGTGT
19634569 GTTTGTTTACATGCAGAAATAGTAGAAAGA
1 GTTTGTTTACATGCAGAAATAGTAGAAAGA
*
19634599 GTTTGTTTACATGCAGAGATAGTAGAAAGA
1 GTTTGTTTACATGCAGAAATAGTAGAAAGA
19634629 GT
1 GT
19634631 GACCTTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (30 bp):
GTTTGTTTACATGCAGAAATAGTAGAAAGA
Found at i:19642781 original size:3 final size:3
Alignment explanation
Indices: 19642775--19642811 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
19642765 AAAAAAAATG
19642775 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
19642812 CCTCAAAGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:19643479 original size:20 final size:19
Alignment explanation
Indices: 19643454--19643506 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
19643444 AAAAAAATCA
*
19643454 AAAGTATCGATACATTTAAC
1 AAAGTATCAATAC-TTTAAC
*
19643474 AAAGTATCAATATCTTTCAC
1 AAAGTATCAATA-CTTTAAC
19643494 AAAGTATCAATAC
1 AAAGTATCAATAC
19643507 CTTATCCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (19 bp):
AAAGTATCAATACTTTAAC
Found at i:19645091 original size:10 final size:10
Alignment explanation
Indices: 19645076--19645136 Score: 63
Period size: 10 Copynumber: 6.1 Consensus size: 10
19645066 TAATTTTAGG
19645076 ATTTAT-TTT
1 ATTTATCTTT
19645085 CATTTATCTTT
1 -ATTTATCTTT
19645096 ATTTATCTTT
1 ATTTATCTTT
*
19645106 AATTATCTTT
1 ATTTATCTTT
*
19645116 GTTTAT-TTGT
1 ATTTATCTT-T
*
19645126 ATTTATTTTT
1 ATTTATCTTT
19645136 A
1 A
19645137 GAATTTCATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:19645862 original size:17 final size:18
Alignment explanation
Indices: 19645831--19645864 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
19645821 TTTTCCTCAT
19645831 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
19645849 TTTAATTT-TGCAATTT
1 TTTAATTTCTGCAATTT
19645865 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:19645902 original size:21 final size:21
Alignment explanation
Indices: 19645876--19645916 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
19645866 AATTCACTTT
19645876 AAATTCTGT-TTTTATTTTTCC
1 AAATTCT-TATTTTATTTTTCC
19645897 AAATTCTTAATTTTATTTTT
1 AAATTCTT-ATTTTATTTTT
19645917 TTATTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.63
Consensus pattern (21 bp):
AAATTCTTATTTTATTTTTCC
Found at i:19647203 original size:27 final size:27
Alignment explanation
Indices: 19647165--19647221 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
19647155 TGAGTAAAAA
19647165 TTAGAATTAGGACTGAAAATACACATT
1 TTAGAATTAGGACTGAAAATACACATT
19647192 TTAGAATTAGGACTGAAAATACACATT
1 TTAGAATTAGGACTGAAAATACACATT
19647219 TTA
1 TTA
19647222 AAAAGTTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.32
Consensus pattern (27 bp):
TTAGAATTAGGACTGAAAATACACATT
Found at i:19650346 original size:2 final size:2
Alignment explanation
Indices: 19650339--19650368 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
19650329 TGGACCCCAA
19650339 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19650369 CCAACAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19651051 original size:13 final size:13
Alignment explanation
Indices: 19651033--19651058 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19651023 TATGAGGATG
19651033 ATGATTTTAAGCT
1 ATGATTTTAAGCT
19651046 ATGATTTTAAGCT
1 ATGATTTTAAGCT
19651059 TCTTATAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
ATGATTTTAAGCT
Found at i:19655498 original size:2 final size:2
Alignment explanation
Indices: 19655491--19655526 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
19655481 GAACTAGTAT
19655491 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19655527 GATGTTTACG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:19656538 original size:30 final size:30
Alignment explanation
Indices: 19656504--19656562 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
19656494 ATTTGAGCTA
* *
19656504 AATTTT-CCAATCAACTTTTTAAAAAGAGTC
1 AATTTTACC-ATCAACCTTTCAAAAAGAGTC
19656534 AATTTTACCATCAACCTTTCAAAAAGAGT
1 AATTTTACCATCAACCTTTCAAAAAGAGT
19656563 TGAATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.34
Consensus pattern (30 bp):
AATTTTACCATCAACCTTTCAAAAAGAGTC
Found at i:19658866 original size:38 final size:37
Alignment explanation
Indices: 19658820--19658917 Score: 115
Period size: 38 Copynumber: 2.6 Consensus size: 37
19658810 GAAATTTTTG
* *
19658820 TTATAATTATTGTAATTATAATTTACGATCGAATATTA
1 TTATAATTATTGTAATTATAATTTACG-TCAAACATTA
* * **
19658858 TTATAATTATTGTAATTGTATTTTTTTGTCAAACATTA
1 TTATAATTATTGTAATTATA-ATTTACGTCAAACATTA
*
19658896 TTATAATTATGGTAATTATAAT
1 TTATAATTATTGTAATTATAAT
19658918 CATTATATTC
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
37 1 0.02
38 45 0.90
39 4 0.08
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (37 bp):
TTATAATTATTGTAATTATAATTTACGTCAAACATTA
Found at i:19658939 original size:17 final size:18
Alignment explanation
Indices: 19658914--19658951 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
19658904 ATGGTAATTA
19658914 TAATCATTATATTCA-GT
1 TAATCATTATATTCATGT
* *
19658931 TAATTATTATGTTCATGT
1 TAATCATTATATTCATGT
19658949 TAA
1 TAA
19658952 GATATCAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (18 bp):
TAATCATTATATTCATGT
Found at i:19660729 original size:30 final size:30
Alignment explanation
Indices: 19660672--19660729 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
19660662 TACCATTTCA
*
19660672 TTTTATTTTTATTAAAATTTGGCCCTAACC
1 TTTTATTTTTATTAAAATTTAGCCCTAACC
* ** *
19660702 TTTTATTTTTGTTTCAATTTAGTCCTAA
1 TTTTATTTTTATTAAAATTTAGCCCTAA
19660730 TGGCCATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (30 bp):
TTTTATTTTTATTAAAATTTAGCCCTAACC
Found at i:19660978 original size:17 final size:17
Alignment explanation
Indices: 19660958--19661023 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 17
19660948 ATAAAAATAG
19660958 TATATATTATTTTTATT
1 TATATATTATTTTTATT
*
19660975 TATATGTTATTTTATCATAT
1 TATATATTATTTT-T-AT-T
* *
19660995 TATTTA-TATTTCATATT
1 TATATATTATTT-TTATT
19661012 TATTATATTATT
1 TA-TATATTATT
19661024 CCCTATATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
17 15 0.39
18 6 0.16
19 12 0.32
20 5 0.13
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (17 bp):
TATATATTATTTTTATT
Found at i:19661019 original size:25 final size:24
Alignment explanation
Indices: 19660970--19661023 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
19660960 TATATTATTT
19660970 TTATTTATATGTTATTTTATCATA
1 TTATTTATATGTTATTTTATCATA
*
19660994 TTATTTATAT-TTCATATTTATTATA
1 TTATTTATATGTT-AT-TTTATCATA
19661019 TTATT
1 TTATT
19661024 CCCTATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 2 0.07
24 12 0.44
25 13 0.48
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (24 bp):
TTATTTATATGTTATTTTATCATA
Found at i:19673188 original size:44 final size:44
Alignment explanation
Indices: 19673135--19673412 Score: 346
Period size: 44 Copynumber: 6.3 Consensus size: 44
19673125 ATAGTCGATC
* * * *
19673135 TGGCATCTCTATATTGTCAGAGAGCAGATCAAAGAT-AGCAAATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGA-CAGATT
*
19673179 TGGTGTCTCTGTATTGAT-AGAGAGCAGATCGAAGATGACAGATT
1 TGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATGACAGATT
* *
19673223 TGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACAGATT
* * *
19673267 TAGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACAGATT
* *
19673311 TGTCGTCTCTGTATTGAT-AGAGAGCAGATCGAAGATGACAAATT
1 TGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATGACAGATT
** * * *
19673355 TGGCGTCTCTGTATTAACAGAAAGCAGGTCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACAGATT
*
19673399 TGTCGTCTCTGTAT
1 TGGCGTCTCTGTAT
19673413 ATCGAAGATG
Statistics
Matches: 205, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
44 203 0.99
45 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (44 bp):
TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGACAGATT
Found at i:19673275 original size:88 final size:88
Alignment explanation
Indices: 19673135--19673412 Score: 405
Period size: 88 Copynumber: 3.2 Consensus size: 88
19673125 ATAGTCGATC
* * * * *
19673135 TGGCATCTCTATATTGTCAGAGAGCAGATCAAAGAT-AGCAAATTTGGTGTCTCTGTATTGATAG
1 TGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGA-CAAATTTGGCGTCTCTGTATTGACAG
*
19673199 AGAGCAGATCGAAGATGACAGATT
65 AGAGCAGATCGAAGATAACAGATT
* *
19673223 TGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAGATTTAGCGTCTCTGTATTGACAGA
1 TGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAAATTTGGCGTCTCTGTATTGACAGA
19673288 GAGCAGATCGAAGATAACAGATT
66 GAGCAGATCGAAGATAACAGATT
* * * *
19673311 TGTCGTCTCTGTATTGATAGAGAGCAGATCGAAGATGACAAATTTGGCGTCTCTGTATTAACAGA
1 TGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAAATTTGGCGTCTCTGTATTGACAGA
* *
19673376 AAGCAGGTCGAAGATAACAGATT
66 GAGCAGATCGAAGATAACAGATT
*
19673399 TGTCGTCTCTGTAT
1 TGGCGTCTCTGTAT
19673413 ATCGAAGATG
Statistics
Matches: 173, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
88 172 0.99
89 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (88 bp):
TGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAAATTTGGCGTCTCTGTATTGACAGA
GAGCAGATCGAAGATAACAGATT
Found at i:19673356 original size:132 final size:131
Alignment explanation
Indices: 19673140--19673619 Score: 547
Period size: 132 Copynumber: 3.7 Consensus size: 131
19673130 CGATCTGGCA
* * * * * * *
19673140 TCTCTATATTGTCAGAGAGCAGATCAAAGATAGCAAATTTGGTGTCTCTGTATTGATAGAGAGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCA
* *
19673205 GATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAGATTTAG
66 GATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTT-G
19673270 CG
130 CG
* *
19673272 TCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGTCGTCTCTGTATTGATAGAGAGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCA
* * * *
19673337 GATCGAAGATGACAAATTTGGCGTCTCTGTATTAACAGAAAGCAGGTCGAAGATAACAGATTTGT
66 GATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTG-
19673402 CG
130 CG
* * *
19673404 TCTCTGTA-T------------ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGTA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCA
* * *
19673456 GATCGAAGATAACAGGTTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGGTTTGG
66 GATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTT-G
19673521 CG
130 CG
* * * ** * *
19673523 TCTCTGTATTGACAAAGAGCATATTGAAGATAGTAGATGTGGCGTCTCTGTATTGACAGAAAGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCA
* * * *
19673588 GATCAAAGATG-CAGATTTTGCCTCTCCGTATT
66 GATCGAAGATGACAGATTTGGCGTCTCTGTATT
19673620 AAGTAAGGAG
Statistics
Matches: 294, Mismatches: 39, Indels: 31
0.81 0.11 0.09
Matches are distributed among these distances:
119 104 0.35
120 2 0.01
131 19 0.06
132 169 0.57
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (131 bp):
TCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCA
GATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGC
G
Found at i:19673462 original size:75 final size:75
Alignment explanation
Indices: 19673338--19673487 Score: 228
Period size: 75 Copynumber: 2.0 Consensus size: 75
19673328 TAGAGAGCAG
* * *
19673338 ATCGAAGATGACAAATTTGGCGTCTCTGTATTAACAGAAAGCAGGTCGAAGATAACAGATTTGTC
1 ATCGAAGATGACAAATTTGGCGTCTCTATATTAACAGAAAGCAGATCGAAGATAACAGATTTGGC
19673403 GTCTCTGTAT
66 GTCTCTGTAT
* * * * *
19673413 ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGTAGATCGAAGATAACAGGTTTGGC
1 ATCGAAGATGACAAATTTGGCGTCTCTATATTAACAGAAAGCAGATCGAAGATAACAGATTTGGC
19673478 GTCTCTGTAT
66 GTCTCTGTAT
19673488 TGACAGAGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (75 bp):
ATCGAAGATGACAAATTTGGCGTCTCTATATTAACAGAAAGCAGATCGAAGATAACAGATTTGGC
GTCTCTGTAT
Found at i:19673476 original size:44 final size:44
Alignment explanation
Indices: 19673413--19673619 Score: 254
Period size: 44 Copynumber: 4.7 Consensus size: 44
19673403 GTCTCTGTAT
* * *
19673413 ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGTAG
1 ATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCAG
*
19673457 ATCGAAGATAACAGGTTTGGCGTCTCTGTATTGACAGAGAGCAG
1 ATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCAG
* * *
19673501 ATCGAAGATAACAGGTTTGGCGTCTCTGTATTGACAAAGAGCAT
1 ATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCAG
* ** * *
19673545 ATTGAAGATAGTAGATGTGGCGTCTCTGTATTGACAGAAAGCAG
1 ATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCAG
* * * * *
19673589 ATCAAAGAT-GCAGATTTTGCCTCTCCGTATT
1 ATCGAAGATAACAGATTTGGCGTCTCTGTATT
19673620 AAGTAAGGAG
Statistics
Matches: 142, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
43 17 0.12
44 125 0.88
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
ATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAGAGAGCAG
Found at i:19673506 original size:119 final size:119
Alignment explanation
Indices: 19673294--19673531 Score: 359
Period size: 119 Copynumber: 2.0 Consensus size: 119
19673284 CAGAGAGCAG
* * * *
19673294 ATCGAAGATAACAGATTTGTCGTCTCTGTATTGATAGAGAGCAGATCGAAGATGACAAATTTGGC
1 ATCGAAGATAACAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAACAAATTTGGC
* *
19673359 GTCTCTGTATTAACAGAAAGCAGGTCGAAGATAACAGATTTGTCGTCTCTGTAT
66 GTCTCTGTATTAACAGAAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
* * **
19673413 ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGTAGATCGAAGATAACAGGTTTGGC
1 ATCGAAGATAACAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAACAAATTTGGC
* * *
19673478 GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGGTTTGGCGTCTCTGTAT
66 GTCTCTGTATTAACAGAAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
19673532 TGACAAAGAG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
119 106 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (119 bp):
ATCGAAGATAACAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAACAAATTTGGC
GTCTCTGTATTAACAGAAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
Found at i:19673554 original size:163 final size:163
Alignment explanation
Indices: 19673254--19673575 Score: 475
Period size: 163 Copynumber: 2.0 Consensus size: 163
19673244 GAGCAGATCA
* *
19673254 AAGATGACAGATTTAGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGTCGTCT
1 AAGATGACAGATTTAGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCT
* * *
19673319 CTGTATTGATAGAGAGCAGATCGAAGATGACAAATTTGGCGTCTCTGTATTAACAGAAAGCAGGT
66 CTGTATTGACAGAGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAACAGAAAGCAGAT
* *
19673384 CGAAGATAACAGATTTGTCGTCTCTGTATATCG
131 CGAAGATAACAGATGTGGCGTCTCTGTATATCG
* * *
19673417 AAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGTAGATCGAAGATAACAGGTTTGGCGTCT
1 AAGATGACAGATTTAGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCT
** * *
19673482 CTGTATTGACAGAGAGCAGATCGAAGATAACAGGTTTGGCGTCTCTGTATTGACA-AAGAGCATA
66 CTGTATTGACAGAGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAACAGAA-AGCAGA
* **
19673546 TTGAAGATAGTAGATGTGGCGTCTCTGTAT
130 TCGAAGATAACAGATGTGGCGTCTCTGTAT
19673576 TGACAGAAAG
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
162 2 0.01
163 139 0.99
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (163 bp):
AAGATGACAGATTTAGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCT
CTGTATTGACAGAGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAACAGAAAGCAGAT
CGAAGATAACAGATGTGGCGTCTCTGTATATCG
Found at i:19673568 original size:207 final size:206
Alignment explanation
Indices: 19673206--19673605 Score: 604
Period size: 207 Copynumber: 1.9 Consensus size: 206
19673196 TAGAGAGCAG
* *
19673206 ATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCAAAGATGACAGATTTAGC
1 ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAAAGATAACAGATTTAGC
* * *
19673271 GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGTCGTCTCTGTATTGATAGAGAGC
66 GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAAAGAGC
* * *
19673336 AGATCGAAGATGACAAATTTGGCGTCTCTGTATTAACAGAAAGCAGGTCGAAGATAACAGATTTG
131 AGATCGAAGATGACAAATGTGGCGTCTCTGTATTAACAGAAAGCAGATCAAAGAT-ACAGATTTG
19673401 TCGTCTCTGTAT
195 TCGTCTCTGTAT
* * * *
19673413 ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGTAGATCGAAGATAACAGGTTTGGC
1 ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAAAGATAACAGATTTAGC
*
19673478 GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGGTTTGGCGTCTCTGTATTGACAAAGAGC
66 GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAAAGAGC
* * * * * *
19673543 ATATTGAAGAT-AGTAGATGTGGCGTCTCTGTATTGACAGAAAGCAGATCAAAGATGCAGATTT
131 AGATCGAAGATGA-CAAATGTGGCGTCTCTGTATTAACAGAAAGCAGATCAAAGATACAGATTT
19673606 TGCCTCTCCG
Statistics
Matches: 173, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
206 8 0.05
207 165 0.95
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (206 bp):
ATCGAAGATGACAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAAAGATAACAGATTTAGC
GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGACAAAGAGC
AGATCGAAGATGACAAATGTGGCGTCTCTGTATTAACAGAAAGCAGATCAAAGATACAGATTTGT
CGTCTCTGTAT
Found at i:19678085 original size:25 final size:25
Alignment explanation
Indices: 19678051--19678104 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
19678041 GCCAGGCTCG
*
19678051 AAGCCTGATATAACACACTGGCACA
1 AAGCCTGATATAACACACCGGCACA
*
19678076 AAGCCTGATATAATACACCGGCACA
1 AAGCCTGATATAACACACCGGCACA
19678101 AAGC
1 AAGC
19678105 TTGCTAGGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.41, C:0.28, G:0.17, T:0.15
Consensus pattern (25 bp):
AAGCCTGATATAACACACCGGCACA
Found at i:19678134 original size:38 final size:38
Alignment explanation
Indices: 19678087--19678203 Score: 155
Period size: 38 Copynumber: 3.1 Consensus size: 38
19678077 AGCCTGATAT
* *
19678087 AATA-CACCGGCACAAAGCTTGCTAGGCACAGAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACGGAGCCCG
* *
19678124 AATATCACCGGCACAAAGCCTGCTCGGCAGGGAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACGGAGCCCG
* * * *
19678162 AATATCACTGACACAAAACCTGCTAGGTACGGAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACGGAGCCCG
19678200 AATA
1 AATA
19678204 ACGTTACGTT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
37 4 0.06
38 65 0.94
ACGTcount: A:0.32, C:0.31, G:0.24, T:0.13
Consensus pattern (38 bp):
AATATCACCGGCACAAAGCCTGCTAGGCACGGAGCCCG
Found at i:19680360 original size:42 final size:45
Alignment explanation
Indices: 19680284--19680370 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 45
19680274 AATGATGAAT
* *
19680284 AATGACATAAATTATAATATACATTAACCTTTCATGC-AAATATA
1 AATGACATAAATTATAACATACATTAACATTTCATGCAAAATATA
* *
19680328 AATGACATAAA-TA-AACATGCATTAATATTTCATGCAAAATATA
1 AATGACATAAATTATAACATACATTAACATTTCATGCAAAATATA
19680371 TCATAGAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 18 0.47
43 9 0.24
44 11 0.29
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (45 bp):
AATGACATAAATTATAACATACATTAACATTTCATGCAAAATATA
Found at i:19680586 original size:19 final size:19
Alignment explanation
Indices: 19680536--19680598 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
19680526 AAACAATACT
*
19680536 AAAAAA-TA-AAAAAAATA
1 AAAAAATTATAAACAAATA
* *
19680553 CAAAAATAAATAAACAAATA
1 AAAAAAT-TATAAACAAATA
* *
19680573 AACAAATTATAAACATATA
1 AAAAAATTATAAACAAATA
19680592 AAAAAAT
1 AAAAAAT
19680599 AAGTCAAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
17 5 0.14
19 17 0.49
20 13 0.37
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAAATTATAAACAAATA
Found at i:19680965 original size:21 final size:20
Alignment explanation
Indices: 19680940--19681000 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
19680930 TAATAAAATT
19680940 TATAAACAAAATATATAATAA
1 TATAAACAAAATATATAAT-A
*
19680961 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
* *
19680984 TATAAATAATATATATA
1 TATAAACAAAATATATA
19681001 CTATTTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
20 6 0.18
21 9 0.27
22 1 0.03
23 9 0.27
24 8 0.24
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:19682120 original size:17 final size:17
Alignment explanation
Indices: 19682098--19682144 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
19682088 GCTTGTGGCG
*
19682098 CCTAGGGTTTCTGAAAC
1 CCTAGGCTTTCTGAAAC
* *
19682115 CCTAGGTTTTTTGAAAC
1 CCTAGGCTTTCTGAAAC
19682132 CCTAGGCTTTCTG
1 CCTAGGCTTTCTG
19682145 TCTTCTGTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (17 bp):
CCTAGGCTTTCTGAAAC
Found at i:19694785 original size:19 final size:20
Alignment explanation
Indices: 19694757--19694800 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
19694747 ATATATTTGA
19694757 AATTTAAAAAAAATAT-TAC
1 AATTTAAAAAAAATATATAC
* *
19694776 AATTTTAAAAATATATATAC
1 AATTTAAAAAAAATATATAC
19694796 AATTT
1 AATTT
19694801 GAAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTAAAAAAAATATATAC
Found at i:19694812 original size:20 final size:20
Alignment explanation
Indices: 19694789--19694827 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
19694779 TTTAAAAATA
*
19694789 TATATACAATTTGAAATTTT
1 TATAAACAATTTGAAATTTT
* *
19694809 TATAAATATTTTGAAATTT
1 TATAAACAATTTGAAATTT
19694828 AAAAATTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
TATAAACAATTTGAAATTTT
Found at i:19697346 original size:70 final size:68
Alignment explanation
Indices: 19697235--19697806 Score: 263
Period size: 70 Copynumber: 8.2 Consensus size: 68
19697225 CTTGTTACAT
* * * *
19697235 TAAGGCTCGCAGGTGT-AATACCA-CAACCTCCAAACAATTAGCGCAAGCTCAAAGCTCTCACTT
1 TAAGGCTCGCAGGT-TCAATA-CAGTAGCCTCCAAACAGTTAGCG-AAGCTCAAAGCTCCCAC-T
19697298 GTCATAC
62 GTCATAC
* *** *
19697305 TAAGGCTCGCAGGTGCAATACAGTAGCCTTTGAACAGTTAGC-ATGAGCTCAAAGCTCCCAGCTA
1 TAAGGCTCGCAGGTTCAATACAGTAGCCTCCAAACAGTTAGCGA--AGCTCAAAGCTCCCA-CTG
19697369 TCATAC
63 TCATAC
* * *
19697375 TAAGGCTCGCAGGTTCAATACTA-CAGCCTCCAAATAGTTAGCGAGAGTTCAAAGCTCCCAACTG
1 TAAGGCTCGCAGGTTCAATAC-AGTAGCCTCCAAACAGTTAGCGA-AGCTCAAAGCTCCC-ACTG
19697439 TCATAC
63 TCATAC
* * * * * * * *
19697445 TAAGGTTCGCAGGTTCAATACCGTAGCCTCCAAATAGTTAGCAATAGTTTAAAGCTTTCAACTGT
1 TAAGGCTCGCAGGTTCAATACAGTAGCCTCCAAACAGTTAGCGA-AGCTCAAAGC-TCCCACTGT
*
19697510 CAAAC
64 CATAC
* * * * * * * * *
19697515 TAAGGTTTGCAAGATCAATACCA-TAAG-CTCTAAATAGTTAG-TAAGAATTTAAAGCTCCCAAC
1 TAAGGCTCGCAGGTTCAATA-CAGT-AGCCTCCAAACAGTTAGCGAAG--CTCAAAGCTCCC-AC
* *
19697577 TATCAAAC
61 TGTCATAC
* * * * * * * * *
19697585 TAAGGCTCGCAGGTTAAACACTGCAACCTCTAAATAGTTAGCGCGAGCT-AAAGCTCCAAGCTGT
1 TAAGGCTCGCAGGTTCAATACAGTAGCCTCCAAACAGTTAGCG-AAGCTCAAAGCTCCCA-CTGT
19697649 CAT-C
64 CATAC
* * * ** * * *
19697653 TTAAAGCTCGCAGGTTAAACACCA-TAGCCTTTAAAAAGTTAGC-ATGAGCT-AAAACTCCCAGT
1 -TAAGGCTCGCAGGTTCAATA-CAGTAGCCTCCAAACAGTTAGCGA--AGCTCAAAGCTCCCA-C
**
19697715 TGTCATTT
61 TGTCATAC
** * * * * *
19697723 TAATACTCGCAGGTTAAACACCAG-AGCCTTCAAACATTTAGTGCAAGCT-AAAGCTCCCAACTG
1 TAAGGCTCGCAGGTTCAATA-CAGTAGCCTCCAAACAGTTAGCG-AAGCTCAAAGCTCCC-ACTG
*
19697786 TCATAT
63 TCATAC
*
19697792 TAAGGCTCACAGGTT
1 TAAGGCTCGCAGGTT
19697807 AGACACTGCA
Statistics
Matches: 400, Mismatches: 73, Indels: 59
0.75 0.14 0.11
Matches are distributed among these distances:
68 5 0.01
69 139 0.35
70 244 0.61
71 10 0.03
72 2 0.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (68 bp):
TAAGGCTCGCAGGTTCAATACAGTAGCCTCCAAACAGTTAGCGAAGCTCAAAGCTCCCACTGTCA
TAC
Found at i:19697487 original size:140 final size:139
Alignment explanation
Indices: 19697235--19697668 Score: 387
Period size: 140 Copynumber: 3.1 Consensus size: 139
19697225 CTTGTTACAT
* * * * * *
19697235 TAAGGCTCGCAGGTGT-AATACCACAACCTCCAAACAATTAGCGCA-AGCTCAAAGCTCTC-ACT
1 TAAGGCTCGCAGGT-TCAATACTACAGCCTCCAAATAGTTAGCG-AGAGTTCAAAGCTCCCAAC-
* * * *
19697297 TGTCATACTAAGGCTCGCAGGTGCAATACAGTAGCCTTTGAACAGTTAGCATGAGCTCAAAGCTC
63 TGTCATACTAAGGCTCGCAGGTTCAATACAGTAGCCTCTAAATAGTTAGCATGAGCT-AAAGCTC
*
19697362 CCAGCTATCATAC
127 CCAGCTGTCATAC
19697375 TAAGGCTCGCAGGTTCAATACTACAGCCTCCAAATAGTTAGCGAGAGTTCAAAGCTCCCAACTGT
1 TAAGGCTCGCAGGTTCAATACTACAGCCTCCAAATAGTTAGCGAGAGTTCAAAGCTCCCAACTGT
* * * * **
19697440 CATACTAAGGTTCGCAGGTTCAATACCGTAGCCTCCAAATAGTTAGCAAT-AGTTTAAAGCTTTC
66 CATACTAAGGCTCGCAGGTTCAATACAGTAGCCTCTAAATAGTTAGC-ATGAG-CTAAAGCTCCC
* *
19697504 AACTGTCAAAC
129 AGCTGTCATAC
* * * * * ** * *
19697515 TAAGGTTTGCAAGATCAATACCATA-AG-CTCTAAATAGTTAGTAAGAATTTAAAGCTCCCAACT
1 TAAGGCTCGCAGGTTCAATA-C-TACAGCCTCCAAATAGTTAGCGAGAGTTCAAAGCTCCCAACT
* * * * * * * ** *
19697578 ATCAAACTAAGGCTCGCAGGTTAAACACTGCAACCTCTAAATAGTTAGCGCGAGCTAAAGCTCCA
64 GTCATACTAAGGCTCGCAGGTTCAATACAGTAGCCTCTAAATAGTTAGCATGAGCTAAAGCTCCC
19697643 AGCTGTCAT-C
129 AGCTGTCATAC
*
19697653 TTAAAGCTCGCAGGTT
1 -TAAGGCTCGCAGGTT
19697669 AAACACCATA
Statistics
Matches: 235, Mismatches: 50, Indels: 19
0.77 0.16 0.06
Matches are distributed among these distances:
138 1 0.00
139 26 0.11
140 198 0.84
141 8 0.03
142 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (139 bp):
TAAGGCTCGCAGGTTCAATACTACAGCCTCCAAATAGTTAGCGAGAGTTCAAAGCTCCCAACTGT
CATACTAAGGCTCGCAGGTTCAATACAGTAGCCTCTAAATAGTTAGCATGAGCTAAAGCTCCCAG
CTGTCATAC
Found at i:19697662 original size:69 final size:69
Alignment explanation
Indices: 19697589--19697833 Score: 223
Period size: 69 Copynumber: 3.6 Consensus size: 69
19697579 TCAAACTAAG
19697589 GCTCGCAGGTTAAACACTGCA-A-CCTCTAAATAGTTAGCGCGAGCTAAAGCTCCAAGCTGTCAT
1 GCTCGCAGGTTAAACAC--CAGAGCCTCTAAATAGTTAGCGCGAGCTAAAGCTCCAAGCTGTCAT
*
19697652 CTTAAA
64 ATTAAA
* * * ** * * * *
19697658 GCTCGCAGGTTAAACACCATAGCCTTTAAAAAGTTAGCATGAGCTAAAACTCCCAGTTGTCATTT
1 GCTCGCAGGTTAAACACCAGAGCCTCTAAATAGTTAGCGCGAGCTAAAGCTCCAAGCTGTCATAT
19697723 TAATA
66 TAA-A
* * * *
19697728 -CTCGCAGGTTAAACACCAGAGCCT-TCAAACATTTAGTGCAAGCTAAAGCTCCCAA-CTGTCAT
1 GCTCGCAGGTTAAACACCAGAGCCTCT-AAATAGTTAGCGCGAGCTAAAGCT-CCAAGCTGTCAT
*
19697790 ATTAAG
64 ATTAAA
* * * *
19697796 GCTCACAGGTTAGACA-CTGCATCCTCTAAATAGTTAGC
1 GCTCGCAGGTTAAACACCAG-AGCCTCTAAATAGTTAGC
19697834 TTGAGCTCAC
Statistics
Matches: 141, Mismatches: 27, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
67 2 0.01
68 4 0.03
69 130 0.92
70 5 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (69 bp):
GCTCGCAGGTTAAACACCAGAGCCTCTAAATAGTTAGCGCGAGCTAAAGCTCCAAGCTGTCATAT
TAAA
Found at i:19700928 original size:20 final size:20
Alignment explanation
Indices: 19700890--19700928 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
19700880 GAAATAGTAT
*
19700890 GGTCAAGTCATGAACAGTGG
1 GGTCAAGTCATAAACAGTGG
* *
19700910 GGTCATGTCATAAATAGTG
1 GGTCAAGTCATAAACAGTG
19700929 ATAGTATGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (20 bp):
GGTCAAGTCATAAACAGTGG
Found at i:19702574 original size:15 final size:15
Alignment explanation
Indices: 19702550--19702585 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
19702540 TACACCCAGA
19702550 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
* *
19702565 AAAAATAAGAAAAGG
1 AAAAAAAAGAAAAAG
19702580 AAAAAA
1 AAAAAA
19702586 GTGAAAAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:19720918 original size:18 final size:18
Alignment explanation
Indices: 19720897--19720932 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
19720887 AAAATATAGT
19720897 TTTATTAATATATATAAA
1 TTTATTAATATATATAAA
*
19720915 TTTATTAATATATGTAAA
1 TTTATTAATATATATAAA
19720933 AATAGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTATTAATATATATAAA
Found at i:19731693 original size:46 final size:47
Alignment explanation
Indices: 19731587--19731708 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
19731577 TGTCTTCGAC
** * *
19731587 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
19731637 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
19731683 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
19731709 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:19743257 original size:18 final size:19
Alignment explanation
Indices: 19743236--19743279 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
19743226 GATAATTATC
19743236 TTTGAATTTGA-ATTCAAA
1 TTTGAATTTGACATTCAAA
*
19743254 TTTGAA-TTGACATTTAAA
1 TTTGAATTTGACATTCAAA
*
19743272 TTTCAATT
1 TTTGAATT
19743280 ATTTAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 17 0.77
19 1 0.05
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (19 bp):
TTTGAATTTGACATTCAAA
Found at i:19744564 original size:17 final size:17
Alignment explanation
Indices: 19744505--19744565 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
19744495 ATTTAATATT
19744505 TTAAATTTA-AATTTTA
1 TTAAATTTATAATTTTA
* * *
19744521 TTCAA-GTATTATTTTA
1 TTAAATTTATAATTTTA
** *
19744537 TTAAAAATATAATTTTT
1 TTAAATTTATAATTTTA
19744554 TTAAATTTATAA
1 TTAAATTTATAA
19744566 AAATAACATA
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
15 2 0.06
16 14 0.41
17 18 0.53
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (17 bp):
TTAAATTTATAATTTTA
Found at i:19745147 original size:28 final size:29
Alignment explanation
Indices: 19745116--19745181 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
19745106 ATTTTTAAAC
*
19745116 AAGCCCTTAACCTAT-TTTTTAGT-AAAA
1 AAGCCCTTAACCTATATTTTTACTCAAAA
*
19745143 TAAGCCCTTAACTTATAGTTTTTACTCAAAA
1 -AAGCCCTTAACCTATA-TTTTTACTCAAAA
19745174 AAGCCCTT
1 AAGCCCTT
19745182 TATTTTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 14 0.42
30 15 0.45
31 4 0.12
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (29 bp):
AAGCCCTTAACCTATATTTTTACTCAAAA
Found at i:19745868 original size:2 final size:2
Alignment explanation
Indices: 19745861--19745920 Score: 111
Period size: 2 Copynumber: 30.0 Consensus size: 2
19745851 CTCAAACCCT
19745861 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
19745903 TC TC TC TC TC CC TC TC TC
1 TC TC TC TC TC TC TC TC TC
19745921 ACAGTTTCCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:19751989 original size:12 final size:14
Alignment explanation
Indices: 19751962--19751994 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
19751952 ATATAAAATG
19751962 ATTTTATATCAATA
1 ATTTTATATCAATA
19751976 ATTTTAT-T-AATA
1 ATTTTATATCAATA
19751988 ATTTTAT
1 ATTTTAT
19751995 GAGAATTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 1 0.05
14 7 0.37
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTTATATCAATA
Found at i:19753856 original size:30 final size:30
Alignment explanation
Indices: 19753798--19753856 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
19753788 TGACTTGGGT
* *
19753798 CACATGCTCATGTGTGTTGCCCGTGTGTGA
1 CACATGCCCATGTGTGTTGCCCGCGTGTGA
*
19753828 CACATGCCCATGTGTGTTGCCTGCGTGTG
1 CACATGCCCATGTGTGTTGCCCGCGTGTG
19753857 GCTCACACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.32
Consensus pattern (30 bp):
CACATGCCCATGTGTGTTGCCCGCGTGTGA
Found at i:19753946 original size:30 final size:30
Alignment explanation
Indices: 19753901--19753961 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
19753891 TGACTTAGGT
*
19753901 CACACGCCCATGTGTGTTGCCTGTATGTGA
1 CACACGCCCATGTGTGTTGCCCGTATGTGA
* * *
19753931 CACATGCCTATGTGTGTTGCCCGTGTGTGA
1 CACACGCCCATGTGTGTTGCCCGTATGTGA
19753961 C
1 C
19753962 TCATACCCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.31
Consensus pattern (30 bp):
CACACGCCCATGTGTGTTGCCCGTATGTGA
Found at i:19753959 original size:103 final size:103
Alignment explanation
Indices: 19753778--19753984 Score: 297
Period size: 103 Copynumber: 2.0 Consensus size: 103
19753768 TAGCCAAGCT
* * * *
19753778 TGTAACTCTCTGACTTGGGTCACATGCTCATGTGTGTTGCCCGTGTGTGACACATGCCCATGTGT
1 TGTAACTCTCTGACTTAGGTCACACGCCCATGTGTGTTGCCCGTATGTGACACATGCCCATGTGT
* * *
19753843 GTTGCCTGCGTGTGGCTCACACCTATGTGGCCAGACTG
66 GTTGCCCGCGTGTGACTCACACCCATGTGGCCAGACTG
* *
19753881 TGTAACTCTCTGACTTAGGTCACACGCCCATGTGTGTTGCCTGTATGTGACACATGCCTATGTGT
1 TGTAACTCTCTGACTTAGGTCACACGCCCATGTGTGTTGCCCGTATGTGACACATGCCCATGTGT
* * * *
19753946 GTTGCCCGTGTGTGACTCATACCCGTGTGGCCAGGCTG
66 GTTGCCCGCGTGTGACTCACACCCATGTGGCCAGACTG
19753984 T
1 T
19753985 ATGCACCTAA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
103 91 1.00
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.31
Consensus pattern (103 bp):
TGTAACTCTCTGACTTAGGTCACACGCCCATGTGTGTTGCCCGTATGTGACACATGCCCATGTGT
GTTGCCCGCGTGTGACTCACACCCATGTGGCCAGACTG
Done.