Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 81 of 427
Found at i:20514435 original size:19 final size:17
Alignment explanation
Indices: 20514399--20514432 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
20514389 TAAATTGGAA
20514399 ATGAAAATAATTAAAAG
1 ATGAAAATAATTAAAAG
20514416 ATGATAAATAATTAAAA
1 ATGA-AAATAATTAAAA
20514433 AGAAATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
ATGAAAATAATTAAAAG
Found at i:20524746 original size:19 final size:19
Alignment explanation
Indices: 20524724--20524775 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
20524714 AATTACAAAA
*
20524724 AAAAATCAAAATAA-TTTT
1 AAAATTCAAAATAAGTTTT
*
20524742 CAAAATTTGAAAATAAGTTTT
1 -AAAA-TTCAAAATAAGTTTT
20524763 AAAATTCAAAATA
1 AAAATTCAAAATA
20524776 TTTATAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 12 0.43
21 4 0.14
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.33
Consensus pattern (19 bp):
AAAATTCAAAATAAGTTTT
Found at i:20524754 original size:20 final size:20
Alignment explanation
Indices: 20524731--20524768 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
20524721 AAAAAAAATC
20524731 AAAATAA-TTTTCAAAATTTG
1 AAAATAAGTTTT-AAAATTTG
20524751 AAAATAAGTTTTAAAATT
1 AAAATAAGTTTTAAAATT
20524769 CAAAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (20 bp):
AAAATAAGTTTTAAAATTTG
Found at i:20524786 original size:19 final size:18
Alignment explanation
Indices: 20524764--20524799 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
20524754 ATAAGTTTTA
20524764 AAATTCAAAATATTTATAG
1 AAATTC-AAATATTTATAG
*
20524783 AAATTCTAATATTTATA
1 AAATTCAAATATTTATA
20524800 TATTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (18 bp):
AAATTCAAATATTTATAG
Found at i:20524858 original size:12 final size:12
Alignment explanation
Indices: 20524843--20524868 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20524833 TAAAAAATAT
20524843 ATAAAATAATTA
1 ATAAAATAATTA
20524855 ATAAAATAATTA
1 ATAAAATAATTA
20524867 AT
1 AT
20524869 TTTGGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAAATAATTA
Found at i:20525574 original size:20 final size:18
Alignment explanation
Indices: 20525506--20525574 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 18
20525496 CTTCCCCCTA
* *
20525506 TTTATTTTCCCTTAAACT
1 TTTATTCTCCCATAAACT
20525524 TTTATTC-CCCA-AAACTT
1 TTTATTCTCCCATAAAC-T
*
20525541 TTTATTTTTCCCATAAACT
1 TTTA-TTCTCCCATAAACT
20525560 TTTACTTCTCACCAT
1 TTTA-TTCTC-CCAT
20525575 TTACTCTCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
16 4 0.10
17 8 0.20
18 8 0.20
19 13 0.32
20 8 0.20
ACGTcount: A:0.25, C:0.26, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTATTCTCCCATAAACT
Found at i:20526962 original size:20 final size:21
Alignment explanation
Indices: 20526917--20526967 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
20526907 ACTTTTGAGT
*
20526917 TAATTTTTTATTTGAGAAAAG
1 TAATTTTTTATTTGAGAAAAA
* *
20526938 T-ATTTTTTCTTTTA-AAAAA
1 TAATTTTTTATTTGAGAAAAA
20526957 TAATTTGTTTA
1 TAATTT-TTTA
20526968 GGAATACTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
19 5 0.21
20 15 0.62
21 4 0.17
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (21 bp):
TAATTTTTTATTTGAGAAAAA
Found at i:20527352 original size:22 final size:22
Alignment explanation
Indices: 20527306--20527350 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
20527296 GTTACTTGTG
20527306 TTAATTATTACTTTAAAATATT
1 TTAATTATTACTTTAAAATATT
* *
20527328 TTAATTATTA-TTTGAAATTTT
1 TTAATTATTACTTTAAAATATT
20527349 TT
1 TT
20527351 TACTATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTAATTATTACTTTAAAATATT
Found at i:20532017 original size:17 final size:17
Alignment explanation
Indices: 20531995--20532036 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
20531985 ATTCAAGTTT
*
20531995 TTAATTAAAAACTACAA
1 TTAATTAAAAACTAAAA
* *
20532012 TTAATTGAACACTAAAA
1 TTAATTAAAAACTAAAA
20532029 TT-ATTAAA
1 TTAATTAAA
20532037 TATTACGAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (17 bp):
TTAATTAAAAACTAAAA
Found at i:20532077 original size:29 final size:28
Alignment explanation
Indices: 20532044--20532106 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
20532034 AAATATTACG
*
20532044 AAAAACATTAT-A-AAATTTTAGAAATTAT
1 AAAAA-ATTATAAGAAATCTTAG-AATTAT
20532072 AAAAAATTATAAAGAAATCTTAGAATTAT
1 AAAAAATTAT-AAGAAATCTTAGAATTAT
20532101 AAAAAA
1 AAAAAA
20532107 AGTATTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 5 0.16
28 5 0.16
29 13 0.42
30 8 0.26
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAAAATTATAAGAAATCTTAGAATTAT
Found at i:20532079 original size:19 final size:19
Alignment explanation
Indices: 20532075--20532186 Score: 67
Period size: 18 Copynumber: 5.8 Consensus size: 19
20532065 AAATTATAAA
*
20532075 AAATTATAAAGAAATCTTAG
1 AAATTATAAA-AAATTTTAG
*
20532095 -AATTATAAAAAAAGTATTA-
1 AAATTAT-AAAAAA-TTTTAG
*
20532114 AATATTATAAAATATTGTTA-
1 AA-ATTATAAAAAATT-TTAG
*
20532134 ATATATTATAAAAAA--TGAG
1 A-A-ATTATAAAAAATTTTAG
20532153 AGAATTAT-AAAAATTTTAG
1 A-AATTATAAAAAATTTTAG
20532172 AAATTA-AAAAAATTT
1 AAATTATAAAAAATTT
20532187 AGGGTAAATT
Statistics
Matches: 75, Mismatches: 7, Indels: 22
0.72 0.07 0.21
Matches are distributed among these distances:
17 5 0.07
18 20 0.27
19 16 0.21
20 17 0.23
21 17 0.23
ACGTcount: A:0.57, C:0.01, G:0.07, T:0.35
Consensus pattern (19 bp):
AAATTATAAAAAATTTTAG
Found at i:20532122 original size:21 final size:22
Alignment explanation
Indices: 20532096--20532148 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
20532086 AAATCTTAGA
20532096 ATTATAAAAAAAGTATTAA-AT
1 ATTATAAAAAAAGTATTAATAT
* * *
20532117 ATTAT-AAAATATTGTTAATAT
1 ATTATAAAAAAAGTATTAATAT
20532138 ATTATAAAAAA
1 ATTATAAAAAA
20532149 TGAGAGAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 10 0.38
21 12 0.46
22 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
ATTATAAAAAAAGTATTAATAT
Found at i:20532187 original size:17 final size:18
Alignment explanation
Indices: 20532075--20532188 Score: 67
Period size: 20 Copynumber: 6.0 Consensus size: 18
20532065 AAATTATAAA
20532075 AAATTATAAAGAAATCTTAG
1 AAATTATAAA-AAAT-TTAG
20532095 -AATTATAAAAAAAGTATTA-
1 AAATTAT-AAAAAA-T-TTAG
*
20532114 AATATTATAAAATATTGTTA-
1 AA-ATTATAAAA-AAT-TTAG
*
20532134 ATATATTATAAAAAA-TGAG
1 A-A-ATTATAAAAAATTTAG
*
20532153 AGAATTATAAAAATTTTAG
1 A-AATTATAAAAAATTTAG
20532172 AAATTA-AAAAAATTTAG
1 AAATTATAAAAAATTTAG
20532189 GGTAAATTAC
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
17 10 0.13
18 17 0.22
19 15 0.19
20 18 0.23
21 17 0.22
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.34
Consensus pattern (18 bp):
AAATTATAAAAAATTTAG
Found at i:20533579 original size:22 final size:22
Alignment explanation
Indices: 20533550--20533597 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
20533540 ATATTAAACC
20533550 AAGA-GATACATTTTTTTTCAA
1 AAGATGATACATTTTTTTTCAA
20533571 AAGATGATACATTTTTTTTCAA
1 AAGATGATACATTTTTTTTCAA
20533593 AAGAT
1 AAGAT
20533598 ACAACTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (22 bp):
AAGATGATACATTTTTTTTCAA
Found at i:20538391 original size:16 final size:17
Alignment explanation
Indices: 20538358--20538398 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
20538348 ATTAATATGT
20538358 CAATAACAATGATATAG
1 CAATAACAATGATATAG
20538375 CAAT-ACAATG-TAGTAG
1 CAATAACAATGATA-TAG
*
20538391 CAGTAACA
1 CAATAACA
20538399 CAATAGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 2 0.10
16 12 0.57
17 7 0.33
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.22
Consensus pattern (17 bp):
CAATAACAATGATATAG
Found at i:20539083 original size:11 final size:11
Alignment explanation
Indices: 20539067--20539094 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
20539057 TAATTGAACA
20539067 TTTTTTGTAAT
1 TTTTTTGTAAT
20539078 TTTTTTGTAAT
1 TTTTTTGTAAT
20539089 TTTTTT
1 TTTTTT
20539095 CAATAGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTGTAAT
Found at i:20541902 original size:22 final size:23
Alignment explanation
Indices: 20541871--20541919 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
20541861 AAGGAAAATA
*
20541871 AAAAAGAG-TTGTAATTTTTTATT
1 AAAAAGAGTTTGTAA-ATTTTATT
*
20541894 AAAAA-AGTTTTTAAATTTTATT
1 AAAAAGAGTTTGTAAATTTTATT
20541916 AAAA
1 AAAA
20541920 TTTTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (23 bp):
AAAAAGAGTTTGTAAATTTTATT
Found at i:20553789 original size:30 final size:31
Alignment explanation
Indices: 20553735--20553799 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
20553725 AATAGTCTAT
* *
20553735 ATTTTTATAATTTTTAAATAATTAAATTA-A
1 ATTTTTATAATTTTTAAAGAATTAAAATATA
* * *
20553765 ATTTTTATTATTTTTAAGGGATTAAAATATA
1 ATTTTTATAATTTTTAAAGAATTAAAATATA
20553796 ATTT
1 ATTT
20553800 CATTTTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAAGAATTAAAATATA
Found at i:20554106 original size:20 final size:20
Alignment explanation
Indices: 20554069--20554106 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
20554059 TTCCTACTAT
*
20554069 ATTATTTATGATTCTTTTTA
1 ATTATTTATAATTCTTTTTA
20554089 ATTATTTAATAATT-TTTT
1 ATTATTT-ATAATTCTTTT
20554107 ATTATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (20 bp):
ATTATTTATAATTCTTTTTA
Found at i:20558444 original size:46 final size:45
Alignment explanation
Indices: 20558375--20558550 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
20558365 TATTTTGGCA
20558375 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
20558421 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
20558468 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
20558514 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20558551 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:20558530 original size:93 final size:93
Alignment explanation
Indices: 20558371--20558543 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
20558361 GGGATATTTT
* **
20558371 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20558436 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
20558464 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20558529 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
20558544 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:20561588 original size:18 final size:19
Alignment explanation
Indices: 20561530--20561590 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
20561520 TTCAGAAATG
*
20561530 AAAAA-TATATATAAGTTTC
1 AAAAATTATATAT-AGTTTT
*
20561549 AAAATTTATATATA-TATTT
1 AAAAATTATATATAGT-TTT
20561568 AAAAATTATA-ATAGTTTT
1 AAAAATTATATATAGTTTT
20561586 AAAAA
1 AAAAA
20561591 ATTCTAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 12 0.33
19 17 0.47
20 7 0.19
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (19 bp):
AAAAATTATATATAGTTTT
Found at i:20562816 original size:22 final size:20
Alignment explanation
Indices: 20562791--20562830 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
20562781 TGAAATATAA
20562791 AAAAATAAAAAAGTAAAATTTT
1 AAAAAT-AAAAA-TAAAATTTT
20562813 AAAAATAAAAATAAAATT
1 AAAAATAAAAATAAAATT
20562831 AAGTTTCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (20 bp):
AAAAATAAAAATAAAATTTT
Found at i:20567109 original size:6 final size:6
Alignment explanation
Indices: 20567098--20567130 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
20567088 TTAAAGTACT
20567098 CCCCCA CCCCCA -CCCCA -CCCCA CCCCCA CCCCC
1 CCCCCA CCCCCA CCCCCA CCCCCA CCCCCA CCCCC
20567131 TATTTTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.15, C:0.85, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCCCA
Found at i:20567120 original size:16 final size:16
Alignment explanation
Indices: 20567099--20567129 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
20567089 TAAAGTACTC
20567099 CCCCACCCCCACCCCA
1 CCCCACCCCCACCCCA
20567115 CCCCACCCCCACCCC
1 CCCCACCCCCACCCC
20567130 CTATTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.84, G:0.00, T:0.00
Consensus pattern (16 bp):
CCCCACCCCCACCCCA
Found at i:20584735 original size:30 final size:31
Alignment explanation
Indices: 20584699--20584762 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
20584689 TTTTGAAAAT
*
20584699 ATTAAA-TTAATATTTTAATCTTT-TATTATA
1 ATTAAATTTAA-AATTTAATCTTTATATTATA
*
20584729 ATTAAATTTAAAATTTAATCTTTATATTTTA
1 ATTAAATTTAAAATTTAATCTTTATATTATA
20584760 ATT
1 ATT
20584763 TGATATCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (31 bp):
ATTAAATTTAAAATTTAATCTTTATATTATA
Found at i:20601700 original size:2 final size:2
Alignment explanation
Indices: 20601693--20601723 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
20601683 ATGCAAGTCT
20601693 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20601724 TACATGTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20602064 original size:25 final size:26
Alignment explanation
Indices: 20602036--20602085 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
20602026 TTACTTTTAA
20602036 TTATTGCATTCAT-TTATTTATTTGT
1 TTATTGCATTCATATTATTTATTTGT
*
20602061 TTATTTCATTCATAATTATTTATTT
1 TTATTGCATTCAT-ATTATTTATTT
20602086 TTATATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.55
27 10 0.45
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (26 bp):
TTATTGCATTCATATTATTTATTTGT
Found at i:20602084 original size:19 final size:18
Alignment explanation
Indices: 20602060--20602142 Score: 59
Period size: 19 Copynumber: 4.6 Consensus size: 18
20602050 TATTTATTTG
20602060 TTTATTTCATTCATAATTA
1 TTTATTT-ATTCATAATTA
20602079 TTTATTT-TT-AT-ATT-
1 TTTATTTATTCATAATTA
*
20602093 TTGATTTTATTCATAATTATA
1 TTTA-TTTATTCATAA-T-TA
*
20602114 TTTATTTATT-ATTCAACTA
1 TTTATTTATTCA-T-AATTA
20602133 TTTATTTATT
1 TTTATTTATT
20602143 TTTATTAAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
14 3 0.06
15 6 0.12
16 4 0.08
17 4 0.08
18 1 0.02
19 21 0.40
20 8 0.15
21 5 0.10
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATTTATTCATAATTA
Found at i:20602122 original size:33 final size:33
Alignment explanation
Indices: 20602047--20602123 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 33
20602037 TATTGCATTC
*
20602047 ATTTATTTATTTGTTTATTTCATTCATAATTAT
1 ATTTATTTATTTGTTGATTTCATTCATAATTAT
* *
20602080 -TTATTTTTATATT-TTGATTTTATTCATAATTAT
1 ATT-TATTTAT-TTGTTGATTTCATTCATAATTAT
20602113 ATTTATTTATT
1 ATTTATTTATT
20602124 ATTCAACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
32 3 0.08
33 30 0.81
34 4 0.11
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (33 bp):
ATTTATTTATTTGTTGATTTCATTCATAATTAT
Found at i:20602125 original size:23 final size:21
Alignment explanation
Indices: 20602097--20602148 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 21
20602087 TATATTTTGA
20602097 TTTTATTCATA-ATTATATTTAT
1 TTTTATTCA-ACATT-TATTTAT
20602119 TTATTATTCAACTATTTATTTAT
1 TT-TTATTCAAC-ATTTATTTAT
20602142 TTTTATT
1 TTTTATT
20602149 AAAGATGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 8 0.30
23 16 0.59
24 3 0.11
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTATTCAACATTTATTTAT
Found at i:20603628 original size:30 final size:32
Alignment explanation
Indices: 20603592--20603659 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 32
20603582 GGTTTCATTT
**
20603592 CAGTCACCTAAC-TT-TTGAAAAATAACAAAA
1 CAGTCACCTAACGTTATAAAAAAATAACAAAA
*
20603622 CAGTCA-CTAACGTTATAAAAAAATGACAAAA
1 CAGTCACCTAACGTTATAAAAAAATAACAAAA
20603653 CAGTCAC
1 CAGTCAC
20603660 TGACTAACAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 5 0.16
30 8 0.25
31 19 0.59
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (32 bp):
CAGTCACCTAACGTTATAAAAAAATAACAAAA
Found at i:20603719 original size:21 final size:20
Alignment explanation
Indices: 20603691--20603735 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
20603681 GTCTTAACAG
*
20603691 AACTGCTGATGTGGCAAGTT
1 AACTGCTGACGTGGCAAGTT
*
20603711 AACTAGCTGACGTGGCCAGTT
1 AACT-GCTGACGTGGCAAGTT
20603732 AACT
1 AACT
20603736 TGCCACGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (20 bp):
AACTGCTGACGTGGCAAGTT
Found at i:20604733 original size:3 final size:3
Alignment explanation
Indices: 20604719--20604758 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
20604709 CTGCTACTTT
*
20604719 TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
20604759 CTGTTAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:20605124 original size:31 final size:30
Alignment explanation
Indices: 20605060--20605122 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
20605050 CTTAACTAAG
*
20605060 AACTTTTGAATAGTTCAGTAACTTAAATGAA
1 AACTTTTGAATAGTTCAGTAAC-TAAAAGAA
*
20605091 AACTTTTGAATAGTTCAGTTA-TAAAAGCAA
1 AACTTTTGAATAGTTCAGTAACTAAAAG-AA
20605121 AA
1 AA
20605123 ACCTAACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 4 0.14
31 20 0.69
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (30 bp):
AACTTTTGAATAGTTCAGTAACTAAAAGAA
Found at i:20607022 original size:23 final size:21
Alignment explanation
Indices: 20606988--20607041 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 21
20606978 TCATTCATGA
* **
20606988 TTATTTTTTTTATTTTTATATT
1 TTATTTTATTTATAATTATA-T
20607010 TTGATTTTATTTATAATTATAT
1 TT-ATTTTATTTATAATTATAT
20607032 TTATTTTATT
1 TTATTTTATT
20607042 ATCCAACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.29
22 5 0.18
23 15 0.54
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTTATTTATAATTATAT
Found at i:20609567 original size:39 final size:39
Alignment explanation
Indices: 20609513--20609588 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
20609503 GTAATCAATT
20609513 AAAATGATAGTTTCAAGAAAAGAAATGTTTCAAATACCC
1 AAAATGATAGTTTCAAGAAAAGAAATGTTTCAAATACCC
20609552 AAAATGATAGTTTCAAGAAAAGAAATGTTTCAAATAC
1 AAAATGATAGTTTCAAGAAAAGAAATGTTTCAAATAC
20609589 GCAAGTTCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.50, C:0.11, G:0.13, T:0.26
Consensus pattern (39 bp):
AAAATGATAGTTTCAAGAAAAGAAATGTTTCAAATACCC
Found at i:20612066 original size:99 final size:100
Alignment explanation
Indices: 20611954--20612159 Score: 301
Period size: 106 Copynumber: 2.0 Consensus size: 100
20611944 TGTTTCACCA
* *
20611954 ATCATCCTAAATTTCTCAATAA-GAGCTTTCCAGTTTCCAGA-C-ACTTGGATATTGATATCAAG
1 ATCATCCTAAATTTCTCAATAAGGA-C-TTCCAGTTTCCAGACCAACTTGGACACTGATATCAAG
20612016 TGTTGTAAATTAATGCAGGTGTTAGTTTCAAAAACAG
64 TGTTGTAAATTAATGCAGGTGTTAGTTTCAAAAACAG
20612053 ATCATCCTAAATTTCTCAATAAGGACTTCCAGTTTCCAGACCCTTCGATACTTGGACACTGATAT
1 ATCATCCTAAATTTCTCAATAAGGACTTCCAGTTTCCAGA--C--C-A-ACTTGGACACTGATAT
20612118 CAAGTGTTGTAAATTAATGCAGGTGTTAGTTTCAAAAACAG
60 CAAGTGTTGTAAATTAATGCAGGTGTTAGTTTCAAAAACAG
20612159 A
1 A
20612160 CTGTTGATTC
Statistics
Matches: 96, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
98 14 0.15
99 23 0.24
100 2 0.02
103 1 0.01
106 56 0.58
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (100 bp):
ATCATCCTAAATTTCTCAATAAGGACTTCCAGTTTCCAGACCAACTTGGACACTGATATCAAGTG
TTGTAAATTAATGCAGGTGTTAGTTTCAAAAACAG
Found at i:20615145 original size:21 final size:21
Alignment explanation
Indices: 20615119--20615164 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
20615109 TTATGTCTTA
20615119 TAATATA-ACAAGATTTTAATT
1 TAATATATACAA-ATTTTAATT
* *
20615140 TAATATATATAATTTTTAATT
1 TAATATATACAAATTTTAATT
20615161 TAAT
1 TAAT
20615165 TCAAATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TAATATATACAAATTTTAATT
Found at i:20615172 original size:21 final size:21
Alignment explanation
Indices: 20615132--20615176 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
20615122 TATAACAAGA
*
20615132 TTTTAATTTAATATATATAAT
1 TTTTAATTTAATATAAATAAT
20615153 TTTTAATTTAAT-TCAAATAAT
1 TTTTAATTTAATAT-AAATAAT
20615174 TTT
1 TTT
20615177 ATGAATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAATTTAATATAAATAAT
Found at i:20616802 original size:13 final size:13
Alignment explanation
Indices: 20616737--20616813 Score: 68
Period size: 13 Copynumber: 5.9 Consensus size: 13
20616727 ATACTTAAAT
*
20616737 TTTTCTAAAGCAC
1 TTTTCAAAAGCAC
* *
20616750 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
*
20616763 TTCTT-AAAAGTAC
1 TT-TTCAAAAGCAC
* *
20616776 TTTTTTACAA-CAC
1 -TTTTCAAAAGCAC
20616789 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
20616802 TTTTCAAAAGCA
1 TTTTCAAAAGCA
20616814 ATGAAGAACT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
12 7 0.13
13 39 0.75
14 6 0.12
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:20619534 original size:23 final size:23
Alignment explanation
Indices: 20619501--20619546 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
20619491 AGAAGCCTAG
20619501 TAAGTTCATTGACTTAAAATGTA
1 TAAGTTCATTGACTTAAAATGTA
*
20619524 TAAGTTTATTGACTTAAAATGTA
1 TAAGTTCATTGACTTAAAATGTA
20619547 AATCTTATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (23 bp):
TAAGTTCATTGACTTAAAATGTA
Found at i:20620140 original size:30 final size:30
Alignment explanation
Indices: 20620106--20620168 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
20620096 ATACCATAGC
*
20620106 ATACATATGAAATAATTCATTATGACATTT
1 ATACATATGAAATAATTCATTATGAAATTT
20620136 ATACATATGAAATAATTCATTATGAAATTT
1 ATACATATGAAATAATTCATTATGAAATTT
20620166 ATA
1 ATA
20620169 AATTAACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (30 bp):
ATACATATGAAATAATTCATTATGAAATTT
Found at i:20620159 original size:15 final size:15
Alignment explanation
Indices: 20620111--20620163 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
20620101 ATAGCATACA
20620111 TATGAAATAATTCAT
1 TATGAAATAATTCAT
* * *
20620126 TATGACATTTATACA-
1 TATGA-AATAATTCAT
20620141 TATGAAATAATTCAT
1 TATGAAATAATTCAT
20620156 TATGAAAT
1 TATGAAAT
20620164 TTATAAATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
14 6 0.20
15 18 0.60
16 6 0.20
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (15 bp):
TATGAAATAATTCAT
Found at i:20622760 original size:43 final size:42
Alignment explanation
Indices: 20622649--20622761 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 42
20622639 GAGATTTATG
* * * *
20622649 TGTAAGACCATGTCTGAGACATCGACATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGAGACATTGGCATCGTATTTGATTACA
* * * *
20622691 TATAAGACCCTGTTTGAGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGAGACATTGGCATCG-TATTTGATTACA
* *
20622734 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGAGACATTGGCAT
20622762 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGAGACATTGGCATCGTATTTGATTACA
Found at i:20631672 original size:11 final size:11
Alignment explanation
Indices: 20631656--20631682 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
20631646 GCCCTGTTTT
20631656 GACACTGCTTA
1 GACACTGCTTA
20631667 GACACTGCTTA
1 GACACTGCTTA
20631678 GACAC
1 GACAC
20631683 ATGGGCGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (11 bp):
GACACTGCTTA
Found at i:20632760 original size:9 final size:9
Alignment explanation
Indices: 20632746--20632785 Score: 57
Period size: 8 Copynumber: 4.7 Consensus size: 9
20632736 AATTTAATAT
20632746 TTTTTATAA
1 TTTTTATAA
*
20632755 TTTTTATTA
1 TTTTTATAA
20632764 -TTTTATAA
1 TTTTTATAA
20632772 TTTTTAT-A
1 TTTTTATAA
20632780 TTTTTA
1 TTTTTA
20632786 CCACATGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 14 0.50
9 14 0.50
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTTATAA
Found at i:20632760 original size:48 final size:44
Alignment explanation
Indices: 20632649--20632777 Score: 116
Period size: 47 Copynumber: 2.7 Consensus size: 44
20632639 ATTCTGATGC
20632649 ATTTTATAATTTTTCATGACTTTTTATGATTTTT-ATAAAATTAAAAT
1 ATTTTATAATTTTT-ATGA--TTTTAT-ATTTTTAATAAAATTAAAAT
* *
20632696 ATTTTATACATTTTTTACGATATTTATATTTTTTAATTAAAATTTAATAT
1 ATTTTATA-A-TTTTTATGAT-TTTATA-TTTTTAA-TAAAA-TTAAAAT
* *
20632746 TTTTTATAATTTTTATTATTTTATAATTTTTA
1 ATTTTATAATTTTTATGATTTTAT-ATTTTTA
20632778 TATTTTTACC
Statistics
Matches: 69, Mismatches: 5, Indels: 16
0.77 0.06 0.18
Matches are distributed among these distances:
46 2 0.03
47 29 0.42
48 14 0.20
49 11 0.16
50 13 0.19
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (44 bp):
ATTTTATAATTTTTATGATTTTATATTTTTAATAAAATTAAAAT
Found at i:20632775 original size:26 final size:25
Alignment explanation
Indices: 20632737--20632785 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
20632727 TTTAATTAAA
*
20632737 ATTTAATATTTTTTATAATTTTTATT
1 ATTTAATAATTTTTAT-ATTTTTATT
*
20632763 ATTTTATAATTTTTATATTTTTA
1 ATTTAATAATTTTTATATTTTTA
20632786 CCACATGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
ATTTAATAATTTTTATATTTTTATT
Found at i:20632784 original size:17 final size:16
Alignment explanation
Indices: 20632743--20632785 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
20632733 TAAAATTTAA
20632743 TATTTTTTATAATTTT
1 TATTTTTTATAATTTT
20632759 TATTATTTTATAATTTT
1 TATT-TTTTATAATTTT
20632776 TATATTTTTA
1 TAT-TTTTTA
20632786 CCACATGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.16
17 20 0.80
18 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTTTTTATAATTTT
Found at i:20638843 original size:19 final size:19
Alignment explanation
Indices: 20638819--20638858 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
20638809 TATTTCTTAA
20638819 AAGTTGTTTTCAATGAAAC
1 AAGTTGTTTTCAATGAAAC
20638838 AAGTTGTTTTCAATGAAAC
1 AAGTTGTTTTCAATGAAAC
20638857 AA
1 AA
20638859 ACATACATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
AAGTTGTTTTCAATGAAAC
Found at i:20642725 original size:15 final size:15
Alignment explanation
Indices: 20642705--20642761 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
20642695 CGATGAATTT
*
20642705 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
20642720 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
20642735 ATTGAAATTATATTG
1 ATTGAAATTATATTG
20642750 ATTG-AATTATAT
1 ATTGAAATTATAT
20642762 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:20643181 original size:21 final size:21
Alignment explanation
Indices: 20643146--20643241 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
20643136 AGGCACTTTA
20643146 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
20643169 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
20643190 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
20643211 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
20643232 TGTGTCGTAT
1 TGTGTCGTAT
20643242 ACTGATCAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 58 0.87
23 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:20643216 original size:42 final size:42
Alignment explanation
Indices: 20643133--20643241 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
20643123 AGCTTTACCG
* *
20643133 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
20643177 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
20643219 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
20643242 ACTGATCAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 38 0.67
44 19 0.33
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:20654161 original size:27 final size:27
Alignment explanation
Indices: 20654131--20654184 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
20654121 ATGACCAAAA
*
20654131 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
20654158 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
20654185 GTGCTATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:20654325 original size:27 final size:27
Alignment explanation
Indices: 20654288--20654369 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
20654278 GGAGGAAGTG
*
20654288 TACTG-TACTGGTGGCTTTGTCACATA
1 TACTGATACTGGTGGCTTTGCCACATA
* *
20654314 TACT-ATTACTGGTGCCTTTGCCATATA
1 TACTGA-TACTGGTGGCTTTGCCACATA
*
20654341 TACTGATA-TCGATGGCTTTGCCACATA
1 TACTGATACT-GGTGGCTTTGCCACATA
20654368 TA
1 TA
20654370 ATGTTACTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (27 bp):
TACTGATACTGGTGGCTTTGCCACATA
Found at i:20654401 original size:26 final size:26
Alignment explanation
Indices: 20654371--20654443 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
20654361 CCACATATAA
* * * *
20654371 TGTTACTTGTAACTTTGTTGTGTTAC
1 TGTTACTGGCAACTTTGCTGTCTTAC
* *
20654397 TGTTAATGGCAGCTTTGCTGTCTTAC
1 TGTTACTGGCAACTTTGCTGTCTTAC
*
20654423 TGTTACTGGCAGCTTTGCTGT
1 TGTTACTGGCAACTTTGCTGT
20654444 GACATTATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.47
Consensus pattern (26 bp):
TGTTACTGGCAACTTTGCTGTCTTAC
Found at i:20654456 original size:32 final size:26
Alignment explanation
Indices: 20654383--20654443 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
20654373 TTACTTGTAA
* *
20654383 CTTTGTTGTGTTACTGTTAATGGCAG
1 CTTTGCTGTCTTACTGTTAATGGCAG
*
20654409 CTTTGCTGTCTTACTGTTACTGGCAG
1 CTTTGCTGTCTTACTGTTAATGGCAG
20654435 CTTTGCTGT
1 CTTTGCTGT
20654444 GACATTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.46
Consensus pattern (26 bp):
CTTTGCTGTCTTACTGTTAATGGCAG
Found at i:20658093 original size:43 final size:43
Alignment explanation
Indices: 20658045--20658151 Score: 178
Period size: 43 Copynumber: 2.5 Consensus size: 43
20658035 CGACATTTCA
20658045 CCTGCTAGGCTCGAAGCCCGATATTATTTCACCTGCATTATAG
1 CCTGCTAGGCTCGAAGCCCGATATTATTTCACCTGCATTATAG
* * * *
20658088 CCTGCTAGGCTTGAGGCCTGATATTATTTCACTTGCATTATAG
1 CCTGCTAGGCTCGAAGCCCGATATTATTTCACCTGCATTATAG
20658131 CCTGCTAGGCTCGAAGCCCGA
1 CCTGCTAGGCTCGAAGCCCGA
20658152 ATTGTACCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.30
Consensus pattern (43 bp):
CCTGCTAGGCTCGAAGCCCGATATTATTTCACCTGCATTATAG
Found at i:20663713 original size:56 final size:56
Alignment explanation
Indices: 20663627--20663864 Score: 350
Period size: 56 Copynumber: 4.2 Consensus size: 56
20663617 TAGATAGGAT
* *
20663627 ATCGATATGTGATTCTGATATATATGTGCGAGTAAGACTACATTTAATACGTTGGC
1 ATCGATATGTGATTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGC
* * *
20663683 ATCGATATGTGATTCCGATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGC
1 ATCGATATGTGATTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGC
* * * **
20663739 ATTGATACGTGATTCTGATATATGTGTGTAAGTAAGACCACGTTTAATACGTTGGC
1 ATCGATATGTGATTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGC
* * * *
20663795 ATCGATATGTGATTCTGATATATATGTGAGAGTAAAACCCCGTTTAGTACGTTGGC
1 ATCGATATGTGATTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGC
20663851 ATCGATATGTGATT
1 ATCGATATGTGATT
20663865 ACATGTAAGA
Statistics
Matches: 165, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 165 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (56 bp):
ATCGATATGTGATTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGC
Found at i:20664938 original size:13 final size:14
Alignment explanation
Indices: 20664910--20664942 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
20664900 CATTTCGACC
*
20664910 ATGTTTATATTTAT
1 ATGTTTATATTGAT
20664924 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
20664937 ATGTTT
1 ATGTTT
20664943 GTTTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:20664980 original size:2 final size:2
Alignment explanation
Indices: 20664973--20665002 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
20664963 TTAAATTATG
*
20664973 TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20665003 AACTTGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:20671434 original size:33 final size:30
Alignment explanation
Indices: 20671359--20671440 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 30
20671349 GAGACTATAA
20671359 TTGATTGATTATTCGGTGACTAAAGTACAC
1 TTGATTGATTATTCGGTGACTAAAGTACAC
*** *
20671389 AAAATTGATTATTCGGTGACTAAGGTACGCCAC
1 TTGATTGATTATTCGGTGACTAAAGTA---CAC
*
20671422 TTGATTGATTATTAGGTGA
1 TTGATTGATTATTCGGTGA
20671441 TTTGTGATGC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 23 0.56
33 18 0.44
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.35
Consensus pattern (30 bp):
TTGATTGATTATTCGGTGACTAAAGTACAC
Found at i:20673108 original size:43 final size:43
Alignment explanation
Indices: 20673059--20673225 Score: 146
Period size: 43 Copynumber: 3.9 Consensus size: 43
20673049 TATCGAGATG
*
20673059 TGATTACATGTAAGATCATGTCTAGGACATTGGCATTG-T-AT
1 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTTAAT
* * *
20673100 TGAGATTACGTGTAAGACCATGTTTGGGACATTGGCATTGTTAAT
1 T--GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTTAAT
* * * * ***
20673145 TGATTTCATGTAAGACCTTGTCTAGGACAGTGTCATCCAT-AT
1 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTTAAT
* *
20673187 ATG-TTAACATGTAAGACCATATCTAGGATA-TGGCATTGT
1 -TGATT-ACATGTAAGACCATGTCTAGGACATTGGCATTGT
20673226 ACGAGCTTAT
Statistics
Matches: 98, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 84 0.86
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTTAAT
Found at i:20677355 original size:29 final size:29
Alignment explanation
Indices: 20677293--20677395 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
20677283 GTGACGAGAT
* * *
20677293 TGGCACTGAGTGTGTGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* * * *
20677322 CGGCACTAAGCGTGCGAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* *
20677351 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
20677380 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
20677396 TGATTGAGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 1 0.02
29 55 0.96
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:20683864 original size:96 final size:96
Alignment explanation
Indices: 20683697--20683890 Score: 352
Period size: 96 Copynumber: 2.0 Consensus size: 96
20683687 AGAGAGATAG
*
20683697 AATTTGGCATTGAACTGGTGCCAGGAACAGCTCCTGTTTCGATTGCTCCTTATAGAATGACACCA
1 AATTTGGCATTGAACTGGTGCCAGGAACAGCTCCTATTTCGATTGCTCCTTATAGAATGACACCA
*
20683762 ATTGAGCTGAAAGAGTTAAAAGCACAGTTGC
66 ACTGAGCTGAAAGAGTTAAAAGCACAGTTGC
* *
20683793 AATTTGGCATTGAACTGGTGCTAGGAATAGCTCCTATTTCGATTGCTCCTTATAGAATGACACCA
1 AATTTGGCATTGAACTGGTGCCAGGAACAGCTCCTATTTCGATTGCTCCTTATAGAATGACACCA
20683858 ACTGAGCTGAAAGAGTTAAAAGCACAGTTGC
66 ACTGAGCTGAAAGAGTTAAAAGCACAGTTGC
20683889 AA
1 AA
20683891 AAGCTAACGG
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (96 bp):
AATTTGGCATTGAACTGGTGCCAGGAACAGCTCCTATTTCGATTGCTCCTTATAGAATGACACCA
ACTGAGCTGAAAGAGTTAAAAGCACAGTTGC
Found at i:20691670 original size:40 final size:40
Alignment explanation
Indices: 20691615--20691760 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
20691605 ACTTGAGGTA
20691615 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAATG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAATG
* *
20691655 TTATCCGAGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAATG
*
20691695 TTATCCGGGCTTAAAAACCCGCAGGCTTCGTGTTGGAATG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAATG
* *
20691735 TTATCCGGGC-TAGAGACCTGCAGGCT
1 TTATCCGGGCTTAAAGACCCGCAGGCT
20691761 ACGAGCTGGT
Statistics
Matches: 98, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.13
40 85 0.87
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAATG
Found at i:20693959 original size:23 final size:23
Alignment explanation
Indices: 20693929--20693975 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
20693919 TCAGGTAGGA
20693929 ACTTAGTTGAGAAAACTTGCATT
1 ACTTAGTTGAGAAAACTTGCATT
*
20693952 ACTTAGTTGAGAAAACTTGTATT
1 ACTTAGTTGAGAAAACTTGCATT
20693975 A
1 A
20693976 ACGAAATGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (23 bp):
ACTTAGTTGAGAAAACTTGCATT
Found at i:20695167 original size:18 final size:18
Alignment explanation
Indices: 20695124--20695161 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
20695114 ATTTCTTAAG
20695124 AAAATTTACTTCCCTTCC
1 AAAATTTACTTCCCTTCC
20695142 AAAATTTACTTCCC-TCC
1 AAAATTTACTTCCCTTCC
20695159 AAA
1 AAA
20695162 CCTTTAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATTTACTTCCCTTCC
Found at i:20696930 original size:2 final size:2
Alignment explanation
Indices: 20696923--20696948 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20696913 TTTCATTTAT
20696923 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
20696949 CTAATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20703992 original size:3 final size:3
Alignment explanation
Indices: 20703984--20704055 Score: 135
Period size: 3 Copynumber: 24.0 Consensus size: 3
20703974 ATACACTAAT
*
20703984 TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
20704032 TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
20704056 ATATATTTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:20705786 original size:16 final size:16
Alignment explanation
Indices: 20705752--20705796 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
20705742 TCTTTCATTG
*
20705752 AATCCCTAACAATCTTCA
1 AATCCCT-A-AATCCTCA
20705770 AATCCCTAAATCCTCA
1 AATCCCTAAATCCTCA
*
20705786 AATACCTAAAT
1 AATCCCTAAAT
20705797 TGTTAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 17 0.68
17 1 0.04
18 7 0.28
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.27
Consensus pattern (16 bp):
AATCCCTAAATCCTCA
Found at i:20706733 original size:182 final size:182
Alignment explanation
Indices: 20706426--20706790 Score: 703
Period size: 182 Copynumber: 2.0 Consensus size: 182
20706416 ACTTAGAAAG
*
20706426 AATGTTATGGATTTGGTTTCATTTGATGGTAACCATAATGGTGGCAATAGTGTTGTTGACATTGA
1 AATGTTATGGATTTGGTTGCATTTGATGGTAACCATAATGGTGGCAATAGTGTTGTTGACATTGA
*
20706491 GGTTGAAGTAGCTAGATCAATTTGTGGTGTTGAAAGAGAAGTAGCATTAAGGAAGAAAATGTTGA
66 GGTTGAAGGAGCTAGATCAATTTGTGGTGTTGAAAGAGAAGTAGCATTAAGGAAGAAAATGTTGA
20706556 CCATGAAGCAAAAAATTAAAGTTATCAAGAAAGAGAAGTCAATGTATAAGAT
131 CCATGAAGCAAAAAATTAAAGTTATCAAGAAAGAGAAGTCAATGTATAAGAT
*
20706608 AATGTTATGGATTTGGTTGCATTTGATGGTAACCATAATGGTGGCAGTAGTGTTGTTGACATTGA
1 AATGTTATGGATTTGGTTGCATTTGATGGTAACCATAATGGTGGCAATAGTGTTGTTGACATTGA
20706673 GGTTGAAGGAGCTAGATCAATTTGTGGTGTTGAAAGAGAAGTAGCATTAAGGAAGAAAATGTTGA
66 GGTTGAAGGAGCTAGATCAATTTGTGGTGTTGAAAGAGAAGTAGCATTAAGGAAGAAAATGTTGA
20706738 CCATGAAGCAAAAAATTAAAGTTATCAAGAAAGAGAAGTCAATGTATAAGAT
131 CCATGAAGCAAAAAATTAAAGTTATCAAGAAAGAGAAGTCAATGTATAAGAT
20706790 A
1 A
20706791 TTATTTTCTT
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
182 180 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (182 bp):
AATGTTATGGATTTGGTTGCATTTGATGGTAACCATAATGGTGGCAATAGTGTTGTTGACATTGA
GGTTGAAGGAGCTAGATCAATTTGTGGTGTTGAAAGAGAAGTAGCATTAAGGAAGAAAATGTTGA
CCATGAAGCAAAAAATTAAAGTTATCAAGAAAGAGAAGTCAATGTATAAGAT
Found at i:20709855 original size:51 final size:51
Alignment explanation
Indices: 20709794--20709946 Score: 261
Period size: 51 Copynumber: 3.0 Consensus size: 51
20709784 CTACGTGCAA
* * *
20709794 CAGCAACATTATCCAGTTCATCTGATGTTGCAAAATCACTAGCATATTCAT
1 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
*
20709845 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAACATATTCAT
1 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
*
20709896 CAGCAACATTATCCACTCCATCTGATGTTGTAAAATCACCAGCATATTCAT
1 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
20709947 TACCAGTAAC
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 96 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (51 bp):
CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
Found at i:20717359 original size:21 final size:21
Alignment explanation
Indices: 20717333--20717385 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
20717323 AGCAGTGGCG
*
20717333 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
* * *
20717354 GTGAGATTGGATATTGTAGCG
1 GTGAGATTAGATACTGTAGCA
20717375 GTGAGATTAGA
1 GTGAGATTAGA
20717386 AACAATGGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.28, C:0.06, G:0.34, T:0.32
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:20722086 original size:23 final size:24
Alignment explanation
Indices: 20722060--20722111 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
20722050 ATAGTTTTAT
*
20722060 ATTCGAGTT-ATTCGAATTCAAAA
1 ATTCAAGTTAATTCGAATTCAAAA
*
20722083 ATTCAATTTAATTCGAATTC-AAA
1 ATTCAAGTTAATTCGAATTCAAAA
20722106 ATTCAA
1 ATTCAA
20722112 AATAAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (24 bp):
ATTCAAGTTAATTCGAATTCAAAA
Found at i:20729481 original size:24 final size:24
Alignment explanation
Indices: 20729432--20729489 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
20729422 TTTATGAGGA
* *
20729432 AGTTGCGATGTTACATGAATGCGG
1 AGTTGCAATGTTACATGAATACGG
*
20729456 AGTTGCAATGTTACATGAATATGG
1 AGTTGCAATGTTACATGAATACGG
*
20729480 AGTCGCAATG
1 AGTTGCAATG
20729490 CTTAAGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (24 bp):
AGTTGCAATGTTACATGAATACGG
Found at i:20729989 original size:13 final size:13
Alignment explanation
Indices: 20729971--20730006 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
20729961 CAAGAAGAAG
20729971 CTTGGATTCTACA
1 CTTGGATTCTACA
20729984 CTTGGATTCTACA
1 CTTGGATTCTACA
20729997 CTTGGATTCT
1 CTTGGATTCT
20730007 TCAATATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (13 bp):
CTTGGATTCTACA
Found at i:20737715 original size:43 final size:43
Alignment explanation
Indices: 20737663--20737847 Score: 275
Period size: 43 Copynumber: 4.3 Consensus size: 43
20737653 TTTTCGGGAA
*
20737663 AAACGCCGCTAAAGACCATAACCTTTAGAGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTTTCAC
* *
20737706 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTTGA-
1 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGC-TTTTTTCAC
* *
20737749 AAACGCCGCTAAAAACCATAACCTTTAGCGTCGCTTTTTT-AGC
1 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTTTCA-C
* *
20737792 AAACGCCGCTTAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTTTCAC
20737835 AAACGCCGCTAAA
1 AAACGCCGCTAAA
20737848 AATAATGATC
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 6 0.05
43 112 0.88
44 8 0.06
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTTTCAC
Found at i:20737875 original size:86 final size:86
Alignment explanation
Indices: 20737697--20737875 Score: 193
Period size: 86 Copynumber: 2.1 Consensus size: 86
20737687 TTAGAGGCGC
*
20737697 TTTTTTCA-CAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTTGAAAACGCCGCTAA
1 TTTTTT-AGCAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTTCAAAACGCCGCTAA
* *******
20737761 AAACCATAACCTTTAGCGTCGC
65 AAACAATAACCTTTAAAAAAAA
*
20737783 TTTTTTAGCAAACGCCGCTTAAGACCATGACCTTTAGCGGCGC-TTTTTTCACAAACGCCGCTAA
1 TTTTTTAGCAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTTCA-AAACGCCGCTAA
* * *
20737847 AAATAATGATC-TTAAAAAAAA
65 AAACAATAACCTTTAAAAAAAA
20737868 TTATTTTA
1 TT-TTTTA
20737876 TTTTAATTAA
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
85 13 0.17
86 64 0.83
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (86 bp):
TTTTTTAGCAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTTCAAAACGCCGCTAAA
AACAATAACCTTTAAAAAAAA
Found at i:20742821 original size:26 final size:26
Alignment explanation
Indices: 20742791--20742846 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
20742781 TTTTGTCTGT
20742791 TAAAA-ATTATTAGTTAC-ATAATTTTA
1 TAAAATATTATTA-TTACTAT-ATTTTA
* *
20742817 TAAAATATTTTTATTACTATTTTTTA
1 TAAAATATTATTATTACTATATTTTA
20742843 TAAA
1 TAAA
20742847 TTAGATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (26 bp):
TAAAATATTATTATTACTATATTTTA
Found at i:20743079 original size:26 final size:26
Alignment explanation
Indices: 20743050--20743099 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20743040 AAGAATTACA
20743050 TAAAATTTGAAATCTTGAAAATTTTT
1 TAAAATTTGAAATCTTGAAAATTTTT
* * *
20743076 TAAAATTTTAATTCTTTAAAATTT
1 TAAAATTTGAAATCTTGAAAATTT
20743100 GAAATTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (26 bp):
TAAAATTTGAAATCTTGAAAATTTTT
Found at i:20743088 original size:16 final size:16
Alignment explanation
Indices: 20743069--20743099 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20743059 AAATCTTGAA
*
20743069 AATTTTTTAAAATTTT
1 AATTCTTTAAAATTTT
20743085 AATTCTTTAAAATTT
1 AATTCTTTAAAATTT
20743100 GAAATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTCTTTAAAATTTT
Found at i:20743276 original size:15 final size:15
Alignment explanation
Indices: 20743222--20743290 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
20743212 TACCCTAAAT
20743222 CCTAAACCCC-TAAC
1 CCTAAACCCCATAAC
* * *
20743236 ACCTATATCCTA-AAC
1 -CCTAAACCCCATAAC
20743251 CCTAAACCCCATAAC
1 CCTAAACCCCATAAC
20743266 CCGTAAA-CCCATAAC
1 CC-TAAACCCCATAAC
* *
20743281 TCTTAACCCC
1 CCTAAACCCC
20743291 TAAACCTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 11 0.26
15 27 0.64
16 4 0.10
ACGTcount: A:0.36, C:0.43, G:0.01, T:0.19
Consensus pattern (15 bp):
CCTAAACCCCATAAC
Found at i:20743754 original size:22 final size:22
Alignment explanation
Indices: 20743729--20743781 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
20743719 AACATAAACC
20743729 AGTTTAGGGTTTTAGGGGTTA-T
1 AGTTTAGGG-TTTAGGGGTTACT
* *
20743751 AGTTTAGTGTTTAGGGTTTACT
1 AGTTTAGGGTTTAGGGGTTACT
*
20743773 ATTTTAGGG
1 AGTTTAGGG
20743782 GTTATAGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.47
Consensus pattern (22 bp):
AGTTTAGGGTTTAGGGGTTACT
Found at i:20743893 original size:18 final size:17
Alignment explanation
Indices: 20743867--20743902 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
20743857 CGCCACTAAT
20743867 GCTCCGGTTTTTAGCGGC
1 GCTCCGG-TTTTAGCGGC
*
20743885 GCTCTGGTTTTAGCGGC
1 GCTCCGGTTTTAGCGGC
20743902 G
1 G
20743903 TTTTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.06, C:0.25, G:0.36, T:0.33
Consensus pattern (17 bp):
GCTCCGGTTTTAGCGGC
Found at i:20743948 original size:41 final size:41
Alignment explanation
Indices: 20743892--20744174 Score: 338
Period size: 41 Copynumber: 6.9 Consensus size: 41
20743882 GGCGCTCTGG
* *
20743892 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAGTGCTCCAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAGT
* * *
20743933 TTTTAGCGGCATTTTACCAAAAGCGTCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAGT
* * *
20743974 TTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCT-CTGAC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAG-T
* * * *
20744015 TTTTAGCGGCTTTTTACAAAAAGCGTCGCTAATGCTTCAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAGT
* *
20744056 TTTTAGCGGCATTTTACCAAAAGCGCCGCTATTGCTCC-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAGT
* * * *
20744096 CTTTTAGCAGCGTTTTACCAAAAGCGCCGTTATTGCT-CTGTT
1 -TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAG-T
* *
20744138 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
20744175 TGTGTTTTAC
Statistics
Matches: 209, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
40 5 0.02
41 201 0.96
42 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAGT
Found at i:20744031 original size:123 final size:123
Alignment explanation
Indices: 20743892--20744174 Score: 417
Period size: 123 Copynumber: 2.3 Consensus size: 123
20743882 GGCGCTCTGG
*
20743892 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAGTGCTCCAGTTTTTAGCGGCATTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCAGTTTTTAGCGGCATTTTACCAAAAGC
* * *
20743957 GTCGCTAATGCTCCGGT-TTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTCTGAC
66 GCCGCTAATGCTCC-GTCTTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAC
* * *
20744015 TTTTAGCGGCTTTTTACAAAAAGCGTCGCTAATGCTTCAGTTTTTAGCGGCATTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCAGTTTTTAGCGGCATTTTACCAAAAGC
* * * **
20744080 GCCGCTATTGCTCCGTCTTTTAGCAGCGTTTTACCAAAAGCGCCGTTATTGCTCTGTT
66 GCCGCTAATGCTCCGTCTTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAC
*
20744138 TTTTAGCGGCGTTTTACCAAAAA-CGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTA-CAAAAAGCGCCGCTAATGCTC
20744175 TGTGTTTTAC
Statistics
Matches: 142, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
122 2 0.01
123 134 0.94
124 6 0.04
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (123 bp):
TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCAGTTTTTAGCGGCATTTTACCAAAAGC
GCCGCTAATGCTCCGTCTTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAC
Found at i:20753735 original size:29 final size:29
Alignment explanation
Indices: 20753693--20753751 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
20753683 CATGATAAGT
20753693 TTGATAAAGGGAACTTATTTATATTTTTC
1 TTGATAAAGGGAACTTATTTATATTTTTC
20753722 TTGATAAAGGGAACTTATTTATATTTTTC
1 TTGATAAAGGGAACTTATTTATATTTTTC
20753751 T
1 T
20753752 CAGAAATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.49
Consensus pattern (29 bp):
TTGATAAAGGGAACTTATTTATATTTTTC
Found at i:20753876 original size:7 final size:7
Alignment explanation
Indices: 20753864--20753888 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
20753854 AAATGGGTTA
20753864 TTCTTCT
1 TTCTTCT
20753871 TTCTTCT
1 TTCTTCT
20753878 TTCTTCT
1 TTCTTCT
20753885 TTCT
1 TTCT
20753889 CTTCCTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCTTCT
Found at i:20754753 original size:27 final size:27
Alignment explanation
Indices: 20754715--20754813 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
20754705 CATGATAGCT
* *
20754715 AAGAATAGCCTTTGTAGCGAACTCCAA
1 AAGAATAACCTTTGTGGCGAACTCCAA
* * *
20754742 AAGAATAACCTTTATGGAGAGC-CCTAA
1 AAGAATAACCTTTGTGGCGAACTCC-AA
* * *
20754769 AAGAATAACCCTAGTGGCGAACTCTAA
1 AAGAATAACCTTTGTGGCGAACTCCAA
*
20754796 AAGGAAT-GCCTTTGTGGC
1 AA-GAATAACCTTTGTGGC
20754814 AAATTCTGAA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
26 2 0.04
27 48 0.87
28 5 0.09
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (27 bp):
AAGAATAACCTTTGTGGCGAACTCCAA
Found at i:20757997 original size:31 final size:30
Alignment explanation
Indices: 20757940--20757998 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
20757930 GTAAATACCC
* * * *
20757940 AAAATTTGGGGGATTAAAGTGTAAATATGA
1 AAAAATTGGAGGACTAAAGTGAAAATATGA
20757970 AAAAATTGGAGGACTAATAGTGAAAATAT
1 AAAAATTGGAGGACTAA-AGTGAAAATAT
20757999 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.47, C:0.02, G:0.24, T:0.27
Consensus pattern (30 bp):
AAAAATTGGAGGACTAAAGTGAAAATATGA
Found at i:20763249 original size:43 final size:42
Alignment explanation
Indices: 20763162--20763252 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 42
20763152 CCCATAGCAC
* * * *
20763162 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATAGCCCAGATATGGTCTTACATGAGACCT
*
20763204 CATATCAATGCCAATAGCCCAGCTATGGTCTTACATGA-AGCCT
1 CATATCAATGCC-ATAGCCCAGATATGGTCTTACATGAGA-CCT
20763247 CATATC
1 CATATC
20763253 GCTGTCATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 12 0.29
43 30 0.71
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (42 bp):
CATATCAATGCCATAGCCCAGATATGGTCTTACATGAGACCT
Found at i:20765614 original size:20 final size:20
Alignment explanation
Indices: 20765585--20765629 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
20765575 AGCACATGTA
* *
20765585 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
20765605 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
20765625 TTCAT
1 TTCAT
20765630 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:20770544 original size:20 final size:20
Alignment explanation
Indices: 20770519--20770562 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
20770509 AACTATCTCT
20770519 ATTTGATTCCAATCAAATTG
1 ATTTGATTCCAATCAAATTG
** *
20770539 ATTTGATTTTATTCAAATTG
1 ATTTGATTCCAATCAAATTG
20770559 ATTT
1 ATTT
20770563 AAAGGTTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTG
Found at i:20771336 original size:42 final size:41
Alignment explanation
Indices: 20771263--20771345 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 41
20771253 ATGTGACACA
* * *
20771263 AGATTATTAAAAAAGAGAAAAGATATGTGAGAGCTGGTTAGG
1 AGATTATTAAAAAAGAGAAAAGAGATATGAGAG-AGGTTAGG
20771305 AGATTATTAGAAAAA-A-AAAAGAAGATATGAGAGAGGTTAGG
1 AGATTATTA-AAAAAGAGAAAAG-AGATATGAGAGAGGTTAGG
20771346 GAGGGACGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
41 12 0.33
42 19 0.53
43 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.28, T:0.22
Consensus pattern (41 bp):
AGATTATTAAAAAAGAGAAAAGAGATATGAGAGAGGTTAGG
Found at i:20774471 original size:21 final size:19
Alignment explanation
Indices: 20774447--20774489 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
20774437 ATAAAATTTT
*
20774447 AATTGATAAATATTTTTTAAA
1 AATT-ATAAAT-TATTTTAAA
*
20774468 AATTATTAATTATTTTAAA
1 AATTATAAATTATTTTAAA
20774487 AAT
1 AAT
20774490 AATATATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 5 0.25
21 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
AATTATAAATTATTTTAAA
Found at i:20776234 original size:6 final size:6
Alignment explanation
Indices: 20776225--20776280 Score: 58
Period size: 6 Copynumber: 8.7 Consensus size: 6
20776215 ATATAAATTT
* *
20776225 AAAATA AAAATA AAAAGA ATATATATTT AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA A-A-A-A-TA AAAATA AAAATA AAAATA AAAATA
20776277 AAAA
1 AAAA
20776281 ATTTAGATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 35 0.83
7 2 0.05
8 2 0.05
9 2 0.05
10 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:20776247 original size:28 final size:28
Alignment explanation
Indices: 20776215--20776268 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
20776205 AAAATAATAT
20776215 ATATAAATTTAAAATAAAAATAAAAAGA
1 ATATAAATTTAAAATAAAAATAAAAAGA
*
20776243 ATATATATTTAAAATAAAAATAAAAA
1 ATATAAATTTAAAATAAAAATAAAAA
20776269 TAAAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (28 bp):
ATATAAATTTAAAATAAAAATAAAAAGA
Found at i:20776263 original size:34 final size:34
Alignment explanation
Indices: 20776203--20776274 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
20776193 ATAAAACTTT
* *
20776203 AAAAAATAATATATATAAATTTAAAATAAAAATA
1 AAAAAATAATATATATAAAATAAAAATAAAAATA
*
20776237 AAAAGAAT-ATATATTTAAAATAAAAATAAAAATA
1 AAAA-AATAATATATATAAAATAAAAATAAAAATA
20776271 AAAA
1 AAAA
20776275 TAAAAAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.26
Consensus pattern (34 bp):
AAAAAATAATATATATAAAATAAAAATAAAAATA
Found at i:20776347 original size:28 final size:29
Alignment explanation
Indices: 20776298--20776357 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
20776288 TAAAATTTAA
* *
20776298 AAAAATTAAAAACAAAATTAAATATGTTT
1 AAAAATTAAAAACAAAAATAAATATGGTT
*
20776327 AAAAA-TAAAAA-AATAAATAAATTTGGTT
1 AAAAATTAAAAACAA-AAATAAATATGGTT
20776355 AAA
1 AAA
20776358 TTTTTAGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.07
28 20 0.74
29 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (29 bp):
AAAAATTAAAAACAAAAATAAATATGGTT
Found at i:20776593 original size:23 final size:24
Alignment explanation
Indices: 20776561--20776606 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
20776551 TATTTTTAGT
20776561 TATATATTTTTA-GATTTTAAAAA
1 TATATATTTTTATGATTTTAAAAA
* *
20776584 TATATTTTTTTATGTTTTTAAAA
1 TATATATTTTTATGATTTTAAAA
20776607 GTTGAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (24 bp):
TATATATTTTTATGATTTTAAAAA
Found at i:20776659 original size:26 final size:25
Alignment explanation
Indices: 20776629--20776682 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
20776619 TAGAGTAAGC
* *
20776629 TTTTAAATGTTAAATTTTATTTTATT
1 TTTTAAATATTAAA-TTTATTTAATT
* *
20776655 TTTTATATATTCAATTTATTTAATT
1 TTTTAAATATTAAATTTATTTAATT
20776680 TTT
1 TTT
20776683 ATAATTTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTAAATATTAAATTTATTTAATT
Found at i:20778134 original size:21 final size:21
Alignment explanation
Indices: 20778110--20778150 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
20778100 TATTTAAATT
20778110 TAATTAACAATCT-AGATTAAC
1 TAATTAACAAT-TAAGATTAAC
*
20778131 TAATTAATAATTAAGATTAA
1 TAATTAACAATTAAGATTAA
20778151 GTTAGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (21 bp):
TAATTAACAATTAAGATTAAC
Found at i:20780121 original size:20 final size:20
Alignment explanation
Indices: 20780091--20780144 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 20
20780081 CCTTGATTCT
20780091 GATCTAAAGGTTCTATCGGTG
1 GATC-AAAGGTTCTATCGGTG
*
20780112 GATCAAAGGTGTTTCTATTGGTG
1 GATCAAA-G-G-TTCTATCGGTG
20780135 GATCAAAGGT
1 GATCAAAGGT
20780145 AAGTCAGACT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 2 0.07
23 17 0.59
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (20 bp):
GATCAAAGGTTCTATCGGTG
Found at i:20780129 original size:23 final size:23
Alignment explanation
Indices: 20780101--20780144 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
20780091 GATCTAAAGG
20780101 TTCTATCGGTGGATCAAAGGTGT
1 TTCTATCGGTGGATCAAAGGTGT
*
20780124 TTCTATTGGTGGATCAAAGGT
1 TTCTATCGGTGGATCAAAGGT
20780145 AAGTCAGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (23 bp):
TTCTATCGGTGGATCAAAGGTGT
Found at i:20792357 original size:120 final size:120
Alignment explanation
Indices: 20792139--20792460 Score: 335
Period size: 120 Copynumber: 2.7 Consensus size: 120
20792129 ATGTGATGAA
* * * * * *
20792139 ATTATCGGGCTTTGTGCCTAGCAGGATTTGTGCCGATGAATTTATCAAGCTTAGTGCTTAACATG
1 ATTATCGGGCTTTGTGCCTAGCAGGTTTTGTGCCGGTGAATTTATCGAGCTTAGTGCCTAGCAAG
* * * * * * ***
20792204 ATTTATGCCAGTGAATTTATAAAACTTATTGCTTAGTAGGTTTTGTGCCAGTGT-
66 CTTTGTGCCGGTGAATCTATAAAACTTAGTGCTTAGTAGGCTAAATGCCAGTGTG
* * *
20792258 AGTTATCGGGCTTTGTGCCTATCAGGTTTTGTGCCGGTGAATTTATCGGGCTTTGTGCCTAGCAA
1 A-TTATCGGGCTTTGTGCCTAGCAGGTTTTGTGCCGGTGAATTTATCGAGCTTAGTGCCTAGCAA
* * **
20792323 GCTTTGTGCCGGTGAATCTATCAAGCTTAGTGCTTAGTAGGCTAAATGTTAGTGTG
65 GCTTTGTGCCGGTGAATCTATAAAACTTAGTGCTTAGTAGGCTAAATGCCAGTGTG
* * * * * *
20792379 ATTATTGAGCTTTGTGCCTAGCAGGCTTTT-TTCCTGTGAACTTATCGAGCTTAGTGCCTAG-TA
1 ATTATCGGGCTTTGTGCCTAGCAGG-TTTTGTGCCGGTGAATTTATCGAGCTTAGTGCCTAGCAA
*
20792442 GACTTTGTGCCGATGAATC
65 G-CTTTGTGCCGGTGAATC
20792461 AAGTTTTTTA
Statistics
Matches: 167, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
119 3 0.02
120 159 0.95
121 5 0.03
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (120 bp):
ATTATCGGGCTTTGTGCCTAGCAGGTTTTGTGCCGGTGAATTTATCGAGCTTAGTGCCTAGCAAG
CTTTGTGCCGGTGAATCTATAAAACTTAGTGCTTAGTAGGCTAAATGCCAGTGTG
Found at i:20792429 original size:40 final size:39
Alignment explanation
Indices: 20792138--20792459 Score: 182
Period size: 40 Copynumber: 8.1 Consensus size: 39
20792128 TATGTGATGA
* * *
20792138 AATTATCGGGCTTTGTGCCTAGCAGGATTTGTGCCGATG
1 AATTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
* * * * * * * *
20792177 AATTTATCAAGCTTAGTGCTTAACATGATTTATGCCAGTG
1 AA-TTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
** * * * * *
20792217 AATTTATAAAACTTAT-TGCTTAGTAGGTTTTGTGCCAGTG
1 AA-TTATCGAGCTT-TGTGCCTAGCAGGCTTTGTGCCGGTG
* * * *
20792257 TAGTTATCGGGCTTTGTGCCTATCAGGTTTTGTGCCGGTG
1 -AATTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
* *
20792297 AATTTATCGGGCTTTGTGCCTAGCAAGCTTTGTGCCGGTG
1 AA-TTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
* * * * * **
20792337 AATCTATCAAGCTTAGTGCTTAGTAGGCTAAATGT-TAGTGTG
1 AAT-TATCGAGCTTTGTGCCTAGCAGGCT--TTGTGCCG-GTG
* * * *
20792379 -ATTATTGAGCTTTGTGCCTAGCAGGCTTTTTTCCTGTG
1 AATTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
* * * *
20792417 AACTTATCGAGCTTAGTGCCTAGTAGACTTTGTGCCGATG
1 AA-TTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
20792457 AAT
1 AAT
20792460 CAAGTTTTTT
Statistics
Matches: 214, Mismatches: 57, Indels: 24
0.73 0.19 0.08
Matches are distributed among these distances:
38 5 0.02
39 7 0.03
40 192 0.90
41 4 0.02
42 6 0.03
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (39 bp):
AATTATCGAGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
Found at i:20793799 original size:64 final size:64
Alignment explanation
Indices: 20793726--20793936 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
20793716 TTGGGCCAGA
*
20793726 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
20793790 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
20793852 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
20793863 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
20793927 GCCCATTTCA
1 GCCCATTTCA
20793937 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:20793938 original size:137 final size:137
Alignment explanation
Indices: 20793692--20793978 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
20793682 TATTGGGCCT
** *
20793692 AAGCCCATTCAGGTAACAGTGGTATTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
20793757 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
20793822 CATATGC
131 CATATGC
20793829 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
20793894 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
20793959 CATATGC
131 CATATGC
20793966 AAGCCCATTTGGG
1 AAGCCCATTTGGG
20793979 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:20795796 original size:26 final size:26
Alignment explanation
Indices: 20795758--20795893 Score: 245
Period size: 26 Copynumber: 5.2 Consensus size: 26
20795748 CATGATATTC
*
20795758 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
20795784 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
20795810 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
20795836 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
20795862 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
20795888 TTATCA
1 TTATCA
20795894 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:20799419 original size:18 final size:17
Alignment explanation
Indices: 20799393--20799459 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 17
20799383 TGAAGAATAA
20799393 ATTTTGAATTTTTATTT
1 ATTTTGAATTTTTATTT
* *
20799410 ATTATTGAATATTTA-TC
1 ATT-TTGAATTTTTATTT
*
20799427 ATTTTTAATTTCTT-TTT
1 ATTTTGAATTT-TTATTT
20799444 ATTTTTGAATGTTTTA
1 A-TTTTGAAT-TTTTA
20799460 AGTGTTTTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
16 6 0.16
17 11 0.29
18 19 0.50
19 2 0.05
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (17 bp):
ATTTTGAATTTTTATTT
Found at i:20805706 original size:28 final size:28
Alignment explanation
Indices: 20805670--20805725 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
20805660 CAATTAAAAA
20805670 GTATGATTAATTCCTCAAGTCTCTTTAT
1 GTATGATTAATTCCTCAAGTCTCTTTAT
20805698 GTATGATTAATTCCTCAAGTCTCTTTAT
1 GTATGATTAATTCCTCAAGTCTCTTTAT
20805726 AAGATTTCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.46
Consensus pattern (28 bp):
GTATGATTAATTCCTCAAGTCTCTTTAT
Found at i:20810445 original size:21 final size:20
Alignment explanation
Indices: 20810412--20810455 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
20810402 TTCATGGAAA
*
20810412 TTTTTTTCCTTTTTCTCTCT
1 TTTTTTTCCTTTTTCCCTCT
*
20810432 TTTTCTTTCTTTTTTCCCTCT
1 TTTT-TTTCCTTTTTCCCTCT
20810453 TTT
1 TTT
20810456 ACTTATTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTTTCCTTTTTCCCTCT
Found at i:20812055 original size:10 final size:10
Alignment explanation
Indices: 20812035--20812084 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
20812025 AAATTTTAGG
*
20812035 ATTTATTTTT
1 ATTTATCTTT
*
20812045 ATTTTTCTTT
1 ATTTATCTTT
*
20812055 AATTATCTTT
1 ATTTATCTTT
20812065 ATTTAT-TTGT
1 ATTTATCTT-T
20812075 ATTTATCTTT
1 ATTTATCTTT
20812085 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:20816169 original size:13 final size:13
Alignment explanation
Indices: 20816151--20816176 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20816141 ATTTGGACTT
20816151 TGCAACACACCAG
1 TGCAACACACCAG
20816164 TGCAACACACCAG
1 TGCAACACACCAG
20816177 CCACTTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.08
Consensus pattern (13 bp):
TGCAACACACCAG
Found at i:20818677 original size:75 final size:75
Alignment explanation
Indices: 20818553--20818725 Score: 233
Period size: 75 Copynumber: 2.3 Consensus size: 75
20818543 GAAAACACAA
*
20818553 AAAACCTGCAGCCAAACAGCCTTTAATCTATCCCTATTCCAGCCAAGAATAGTGCATTCCTGCCC
1 AAAACCTGCAGCCAAACAGCCTCTAATCTATCCCTATTCCAGCCAAGAATAGTGCATTCCTGCCC
*
20818618 TAGCATATCT-
66 TAG-ATACCTC
* * ** * * *
20818628 AAAACCTACAGTCAAACAGCCTCTGTTCTATCTCTATTCTAGCCTAGAATAGTGCATTCCTGCCC
1 AAAACCTGCAGCCAAACAGCCTCTAATCTATCCCTATTCCAGCCAAGAATAGTGCATTCCTGCCC
*
20818693 TAGATCCCTC
66 TAGATACCTC
20818703 AAAACCTGCAGCCAAACA-CCTCT
1 AAAACCTGCAGCCAAACAGCCTCT
20818726 TTTCAACCAA
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
74 9 0.11
75 76 0.89
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (75 bp):
AAAACCTGCAGCCAAACAGCCTCTAATCTATCCCTATTCCAGCCAAGAATAGTGCATTCCTGCCC
TAGATACCTC
Found at i:20820964 original size:2 final size:2
Alignment explanation
Indices: 20820957--20820986 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
20820947 GAGACTAGTC
*
20820957 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20820987 GTCATTATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:20822312 original size:68 final size:64
Alignment explanation
Indices: 20822069--20822321 Score: 181
Period size: 68 Copynumber: 3.9 Consensus size: 64
20822059 ATATAGTTCG
* * * * * * *
20822069 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGATGTACACATAGCACCACACATGTGACCTAGCTACA-TATATCCCGT
20822131 A
64 A
* * * * * *
20822132 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGTGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGATG---TACACATAGCACCACACATGTGACCTAGCTACATATATCCCG
20822197 TA
63 TA
* * * * **
20822199 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGTGACCTAGCTACAT-AT-A--TCCC
20822264 GTA
62 GTA
* * * *
20822267 GCTCTCTTGTAC-ACATGATGTGCACTTAGCACTATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGATGTACACATAGCACCACACATGTGACCTAGCTACATA
20822322 CCATCTATAT
Statistics
Matches: 156, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 28 0.18
65 2 0.01
66 25 0.16
67 30 0.19
68 51 0.33
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGTGACCTAGCTACATATATCCCGTA
Found at i:20826022 original size:40 final size:39
Alignment explanation
Indices: 20825960--20826141 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 39
20825950 GACCCGCTCA
**
20825960 AATGCCTTCGGGACAAAGCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACG
* *
20826000 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCC-GGTTTAGTAACTCGCACG
*
20826040 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACG
* * * * **
20826079 AACGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACAC-
1 AATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCACG
*
20826119 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
20826142 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.03
39 29 0.24
40 76 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACG
Done.