Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 84 of 427
Found at i:21729294 original size:28 final size:27
Alignment explanation
Indices: 21729231--21729300 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
21729221 ATAGTGAGTC
*
21729231 CGCACACTTAGTGCCATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
21729258 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
21729286 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21729301 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:21737739 original size:43 final size:43
Alignment explanation
Indices: 21737614--21737757 Score: 143
Period size: 43 Copynumber: 3.3 Consensus size: 43
21737604 CGATATGTGT
* * *
21737614 TTTCGTGTAAGACCATGTTTGGGAC-GTTGGCATCGACT-TATGA
1 TTTCATGTAAGACCATGTTTGGGACAG-TGGCATC-AATATTTGA
* * *
21737657 TTTACGTGTAAGACCTTGTTTGGGACA-TCGACATC-ATATTTGA
1 TTT-CATGTAAGACCATGTTTGGGACAGT-GGCATCAATATTTGA
* *
21737700 TTTCATGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGA
1 TTTCATGTAAGACCATGTTTGGGACAGTGGCATCAATATTTGA
*
21737743 TTACATGTAAGACCA
1 TTTCATGTAAGACCA
21737758 CGTCTAGGAC
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
42 26 0.31
43 33 0.39
44 26 0.31
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
TTTCATGTAAGACCATGTTTGGGACAGTGGCATCAATATTTGA
Found at i:21737774 original size:43 final size:42
Alignment explanation
Indices: 21737688--21737775 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
21737678 GGGACATCGA
* *
21737688 CATCATATTTGATTTCATGTAAGACCCTGTCTGGGACAGTGG
1 CATCATATTTGATTACATGTAAGACCCTGTCTAGGACAGTGG
21737730 CATCAATATTTGATTACATGTAAGACCAC-GTCTAGGAC-GTTGG
1 CATC-ATATTTGATTACATGTAAGACC-CTGTCTAGGACAG-TGG
21737773 CAT
1 CAT
21737776 TGTATCAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
42 5 0.12
43 35 0.85
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (42 bp):
CATCATATTTGATTACATGTAAGACCCTGTCTAGGACAGTGG
Found at i:21741304 original size:34 final size:34
Alignment explanation
Indices: 21741257--21741321 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
21741247 GACAATACAA
21741257 TATCAGTTAGGGCCATAGCCCATTACAGTAATAG
1 TATCAGTTAGGGCCATAGCCCATTACAGTAATAG
*
21741291 TATCAGTGT-GGGCCTTAGCCCATTACAGTAA
1 TATCAGT-TAGGGCCATAGCCCATTACAGTAA
21741322 CAATAATAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (34 bp):
TATCAGTTAGGGCCATAGCCCATTACAGTAATAG
Found at i:21747734 original size:49 final size:49
Alignment explanation
Indices: 21747521--21747747 Score: 240
Period size: 49 Copynumber: 4.6 Consensus size: 49
21747511 TCTGGTAGCA
* * * * *
21747521 TAGTACCCTGGACTTAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTATCTGATACACG
* * *
21747570 CAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA-CTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACTATC-TGATACACG
* * * * * * * *
21747620 TAGTATCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-CTATCTGATACACG
* * *
21747671 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTATCTGATACACG
21747720 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
21747748 TGAACTCACA
Statistics
Matches: 146, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
49 65 0.45
50 45 0.31
51 35 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTATCTGATACACG
Found at i:21748433 original size:30 final size:30
Alignment explanation
Indices: 21748399--21748459 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
21748389 CCTTTAATAC
*
21748399 AAACTTTGGCAAAATTAC-CATTTTGCCCCT
1 AAACTTTGCCAAAATTACAC-TTTTGCCCCT
* *
21748429 AAACTTTTCCATAATTACACTTTTGCCCCT
1 AAACTTTGCCAAAATTACACTTTTGCCCCT
21748459 A
1 A
21748460 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (30 bp):
AAACTTTGCCAAAATTACACTTTTGCCCCT
Found at i:21756122 original size:43 final size:44
Alignment explanation
Indices: 21756015--21756123 Score: 100
Period size: 43 Copynumber: 2.5 Consensus size: 44
21756005 TTTGTGTGAG
* * *
21756015 ACCACGTCTAGGACGTTGGCATCGACTTATGATTTAAGTGTAAG
1 ACCACGTCTGGGAAGTTGGCATCGACTTATGATTTAAGTGTAAA
* * *
21756059 ACCATGTTTGGGACAG-TGGCATCGA-TATTTGA-TTACA-TGTAAA
1 ACCACGTCTGGGA-AGTTGGCATCGACT-TATGATTTA-AGTGTAAA
*
21756102 ACCACGTCTGGGATGTTGGCAT
1 ACCACGTCTGGGAAGTTGGCAT
21756124 TGTATGAGCT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.02
43 26 0.50
44 24 0.46
45 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
ACCACGTCTGGGAAGTTGGCATCGACTTATGATTTAAGTGTAAA
Found at i:21758453 original size:28 final size:28
Alignment explanation
Indices: 21758422--21758491 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
21758412 TAGTAATCGA
21758422 GCACTATGTGTGTGAGATCGGGTGTAAG
1 GCACTATGTGTGTGAGATCGGGTGTAAG
*
21758450 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGTGAGATCGGGTGTAAG
*
21758478 GCACTGTGTGTGTG
1 GCACTATGTGTGTG
21758492 CAAAATTATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.19, C:0.13, G:0.40, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGTGAGATCGGGTGTAAG
Found at i:21758938 original size:20 final size:20
Alignment explanation
Indices: 21758913--21758953 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
21758903 GAAACTAATA
21758913 AAGTGAGTTTTGTATTTTTG
1 AAGTGAGTTTTGTATTTTTG
21758933 AAGTGAGTTTTGTATTTTTG
1 AAGTGAGTTTTGTATTTTTG
21758953 A
1 A
21758954 GTAATGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (20 bp):
AAGTGAGTTTTGTATTTTTG
Found at i:21765982 original size:28 final size:28
Alignment explanation
Indices: 21765950--21766051 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 28
21765940 ATGAATATAT
21765950 GCACTATGTGTGCGAGATTAGTAACCAA
1 GCACTATGTGTGCGAGATTAGTAACCAA
* * *
21765978 GCACTATGTGTGTGAGATTGAGTGTA--AG
1 GCACTATGTGTGCGAGATT-AGT-AACCAA
* * * *
21766006 GCACTATGTGTGAGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCAA
21766034 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
21766052 CGGATGTAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 52 0.88
29 3 0.05
30 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCAA
Found at i:21766031 original size:56 final size:56
Alignment explanation
Indices: 21765950--21766073 Score: 169
Period size: 56 Copynumber: 2.2 Consensus size: 56
21765940 ATGAATATAT
* * * *
21765950 GCACTATGTGTGCGAGATTAGTAACCAAGCACTATGTGTGTGAGAT-TGAGTGTAAG
1 GCACTATGTGTGAGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGA-TGTAAG
* *
21766006 GCACTATGTGTGAGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGATGTAAG
1 GCACTATGTGTGAGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGATGTAAG
*
21766062 GCACTGTGTGTG
1 GCACTATGTGTG
21766074 TGCAAAATTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
56 58 0.97
57 2 0.03
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (56 bp):
GCACTATGTGTGAGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGATGTAAG
Found at i:21766065 original size:28 final size:26
Alignment explanation
Indices: 21765978--21766073 Score: 77
Period size: 28 Copynumber: 3.5 Consensus size: 26
21765968 TAGTAACCAA
*
21765978 GCACTATGTGTGTGAGATTGAGTGTAAG
1 GCACTATGTGTGAGAGA-TGA-TGTAAG
* *
21766006 GCACTATGTGTGAGAAATTAT-TAACCG
1 GCACTATGTGTGAGAGATGATGTAA--G
*
21766033 AGCACTATGTGTGCGAGATCGGATGTAAG
1 -GCACTATGTGTGAGAGAT--GATGTAAG
*
21766062 GCACTGTGTGTG
1 GCACTATGTGTG
21766074 TGCAAAATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 3 0.05
28 42 0.76
29 1 0.02
30 2 0.04
31 3 0.05
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.29
Consensus pattern (26 bp):
GCACTATGTGTGAGAGATGATGTAAG
Found at i:21766869 original size:2 final size:2
Alignment explanation
Indices: 21766857--21766887 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
21766847 TGTTCAGGTG
*
21766857 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21766888 CTATTATGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:21771468 original size:17 final size:17
Alignment explanation
Indices: 21771448--21771498 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
21771438 TTCATTTACA
21771448 CATATAGCATATTTTCT
1 CATATAGCATATTTTCT
* *
21771465 C--ATA-C-TATTTACA
1 CATATAGCATATTTTCT
21771478 CATATAGCATATTTTCT
1 CATATAGCATATTTTCT
21771495 CATA
1 CATA
21771499 CTTATATCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 7 0.27
14 1 0.04
15 6 0.23
16 1 0.04
17 11 0.42
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (17 bp):
CATATAGCATATTTTCT
Found at i:21771476 original size:30 final size:30
Alignment explanation
Indices: 21771441--21771500 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
21771431 TTCACAATTC
21771441 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATATTTTCTCATACT
21771471 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATATTTTCTCATACT
21771501 TATATCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.43
Consensus pattern (30 bp):
ATTTACACATATAGCATATTTTCTCATACT
Found at i:21771510 original size:30 final size:30
Alignment explanation
Indices: 21771444--21771510 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
21771434 ACAATTCATT
*
21771444 TACACATATAGCATATTTTCTCATACTATT
1 TACACATATAGCATATTTTCTCATACTATA
21771474 TACACATATAGCATATTTTCTCATACT-TA
1 TACACATATAGCATATTTTCTCATACTATA
21771503 TATCACAT
1 TA-CACAT
21771511 CTCATCACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 3 0.09
30 32 0.91
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (30 bp):
TACACATATAGCATATTTTCTCATACTATA
Found at i:21776582 original size:40 final size:40
Alignment explanation
Indices: 21776527--21776757 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
21776517 CGGATGATAA
* *
21776527 CCGGGATAAGTCCCGATGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
21776567 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
21776607 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * * * *
21776647 CCGGGCTAAGTCCTGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
21776687 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
** *
21776727 CCGGGCTATTTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
21776758 AGCTATATCC
Statistics
Matches: 174, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 8 0.05
40 166 0.95
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:21776668 original size:80 final size:80
Alignment explanation
Indices: 21776527--21776783 Score: 331
Period size: 80 Copynumber: 3.2 Consensus size: 80
21776517 CGGATGATAA
* *
21776527 CCGGGATAAGTCCCGATGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
21776592 TGCGAGTTATTACAT
66 TGCGAGCTACTACAT
* * *
21776607 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACATCCGGGCTAAGTCCTGAGGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
21776672 TGCGAGCTACTATAT
66 TGCGAGCTACTACAT
* * * **
21776687 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATTTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
21776751 AGCGAG-TAGCTATAT
66 TGCGAGCTA-CTACAT
* *
21776766 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
21776784 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
78 16 0.10
79 16 0.10
80 125 0.80
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGCTACTACAT
Found at i:21783278 original size:28 final size:29
Alignment explanation
Indices: 21783233--21783311 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 29
21783223 CCACGTGATT
* * * *
21783233 CAAGCCCGCACACATAGTGCCATATAGTC
1 CAAGCTCGCACACTTAGTGCCATACAGTA
* *
21783262 CAA-CTCGCACACTTAGTGCCGTACATTA
1 CAAGCTCGCACACTTAGTGCCATACAGTA
*
21783290 CAAGCTCGCACACTCAGTGCCA
1 CAAGCTCGCACACTTAGTGCCA
21783312 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.19
Consensus pattern (29 bp):
CAAGCTCGCACACTTAGTGCCATACAGTA
Found at i:21783301 original size:29 final size:28
Alignment explanation
Indices: 21783210--21783310 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
21783200 TACTCAATCA
* *
21783210 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
21783239 CGCACACATAGTGCCATATAGTCCAA-CT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
21783267 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
21783296 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
21783311 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 3 0.05
28 23 0.40
29 32 0.55
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:21791234 original size:29 final size:28
Alignment explanation
Indices: 21791146--21791247 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
21791136 TACTCAATCA
* *
21791146 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
21791175 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
21791204 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
21791233 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
21791248 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:21795771 original size:40 final size:40
Alignment explanation
Indices: 21795716--21795944 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
21795706 TGGATGATAA
21795716 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
21795756 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
21795796 TCGGGCTTAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
21795836 CCGGGCTAAGTCCCG-AGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
21795875 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
21795914 CCGGGCTATGTCCTGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
21795945 AGCTATATCC
Statistics
Matches: 172, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
38 3 0.02
39 71 0.41
40 98 0.57
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:21795850 original size:80 final size:80
Alignment explanation
Indices: 21795716--21795970 Score: 331
Period size: 78 Copynumber: 3.2 Consensus size: 80
21795706 TGGATGATAA
21795716 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
21795781 TGCGAGTTATTACAT
66 TGCGAGTTACTACAT
* * *
21795796 TCGGGCTTAGTCCCGAAGGCATTTGTGCAAGTTATTACATCCGGGCTAAGTCCCG-AGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
21795860 TGCGAGCTACTATAT
66 TGCGAGTTACTACAT
* * * * *
21795875 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCTGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
21795938 AGCGAG-TAGCTATAT
66 TGCGAGTTA-CTACAT
* *
21795953 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
21795971 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
77 8 0.05
78 60 0.39
79 35 0.23
80 52 0.34
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTACAT
Found at i:21795877 original size:39 final size:40
Alignment explanation
Indices: 21795716--21795970 Score: 322
Period size: 40 Copynumber: 6.5 Consensus size: 40
21795706 TGGATGATAA
*
21795716 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
21795756 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
21795796 TCGGGCTTAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
21795836 CCGGGCTAAGTCCCG-AGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
21795875 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
21795914 CCGGGCTATGTCCTGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
21795953 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
21795971 TACTTGGCTT
Statistics
Matches: 193, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
38 17 0.09
39 78 0.40
40 98 0.51
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:21800825 original size:176 final size:175
Alignment explanation
Indices: 21800531--21800885 Score: 683
Period size: 176 Copynumber: 2.0 Consensus size: 175
21800521 ACTCATTCTT
21800531 GAACTAACTATTATCGCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGAC
1 GAACTAACTATTATCGCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGAC
*
21800596 TGGATTGTCGAACCCAAATGAACTAAAAGTACTAGTAATGACTGGCTTTTTATTATCTAGCCTAA
66 CGGATTGTCGAACCCAAATGAACTAAAAGTACTAGTAATGACTGGCTTTTTATTATCTAGCCTAA
21800661 GAATAAAAGGGGTTTTTTGTTTTAATTAAGTAATTATCTAAACTAA
131 GAATAAAAGGGG-TTTTTGTTTTAATTAAGTAATTATCTAAACTAA
21800707 GAACTAACTATTATCGCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGAC
1 GAACTAACTATTATCGCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGAC
*
21800772 CGGATTGTCGAACCCAAATGAACTAAAAGTACTAGTAATGATTGGCTTTTTATTATCTAGCCTAA
66 CGGATTGTCGAACCCAAATGAACTAAAAGTACTAGTAATGACTGGCTTTTTATTATCTAGCCTAA
21800837 GAATAAAAGGGGTTTTTGTTTTAATTAAGTAATTATCTAAACTAA
131 GAATAAAAGGGGTTTTTGTTTTAATTAAGTAATTATCTAAACTAA
21800882 GAAC
1 GAAC
21800886 GCACAGAGAA
Statistics
Matches: 177, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
175 37 0.21
176 140 0.79
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (175 bp):
GAACTAACTATTATCGCGATGTAGGCAAGTGTACCTATCGAACAGTAGTATAGTTTTAGCAAGAC
CGGATTGTCGAACCCAAATGAACTAAAAGTACTAGTAATGACTGGCTTTTTATTATCTAGCCTAA
GAATAAAAGGGGTTTTTGTTTTAATTAAGTAATTATCTAAACTAA
Found at i:21803620 original size:29 final size:29
Alignment explanation
Indices: 21803558--21803660 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
21803548 GTGACGAGAT
* * *
21803558 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
21803587 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
21803616 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
21803645 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
21803661 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:21816436 original size:40 final size:40
Alignment explanation
Indices: 21816328--21816537 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
21816318 CGGGATTTAA
* * * * *
21816328 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
21816368 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
21816408 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
21816448 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
21816488 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
21816528 CCGGATATAT
1 CCGGATATAT
21816538 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:21819245 original size:29 final size:29
Alignment explanation
Indices: 21819212--21819293 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
21819202 TGACAAGATA
*
21819212 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
21819241 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
21819270 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
21819294 AAAATAAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:21821699 original size:40 final size:40
Alignment explanation
Indices: 21821571--21821701 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
21821561 TATGCTGGAA
* * * *
21821571 ATTATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
21821611 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
21821651 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
21821691 ATTATATCCGG
1 ATTATATCCGG
21821702 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:21827810 original size:40 final size:40
Alignment explanation
Indices: 21827744--21827910 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
21827734 AAATTGAATG
* * *
21827744 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
21827783 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
21827823 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
21827863 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
21827903 ATATCCGG
1 ATATCCGG
21827911 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:21831119 original size:18 final size:17
Alignment explanation
Indices: 21831086--21831137 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
21831076 ACCATATAAT
*
21831086 AACTCT-TATTTGGAAC
1 AACTCTATATTTAGAAC
21831102 AACCTCTATATTTAGAAC
1 AA-CTCTATATTTAGAAC
*
21831120 AACT-TACATTTAGAAC
1 AACTCTATATTTAGAAC
21831136 AA
1 AA
21831138 GTCAAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 15 0.47
17 6 0.19
18 11 0.34
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (17 bp):
AACTCTATATTTAGAAC
Found at i:21833954 original size:29 final size:29
Alignment explanation
Indices: 21833912--21833982 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
21833902 GACGAGATTA
21833912 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
21833941 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
21833970 GCACTAAGTGTGC
1 GCACTAAGTGTGC
21833983 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:21833998 original size:29 final size:29
Alignment explanation
Indices: 21833912--21834042 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 29
21833902 GACGAGATTA
* **
21833912 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
* **
21833941 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
**
21833970 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTCGAAACGTATG
* * * *
21833999 GCACTATGTGTGCGGGCT-TAAATCGCATG
1 GCACTAAGTGTGCGAGCTCGAAA-CGTATG
21834028 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
21834043 AATCGAGTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 85 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCGAAACGTATG
Found at i:21837194 original size:16 final size:16
Alignment explanation
Indices: 21837153--21837194 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
21837143 AAAGTTGATA
21837153 ATAATTAATATATATT
1 ATAATTAATATATATT
*
21837169 ATAATGAATATA-ATT
1 ATAATTAATATATATT
21837184 ATATATTAATA
1 ATA-ATTAATA
21837195 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:21837886 original size:13 final size:13
Alignment explanation
Indices: 21837868--21837896 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
21837858 GGTTGTTTAT
21837868 TAAACTAATTAAC
1 TAAACTAATTAAC
21837881 TAAACTAATTAAC
1 TAAACTAATTAAC
21837894 TAA
1 TAA
21837897 TTAAACTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:21837903 original size:17 final size:15
Alignment explanation
Indices: 21837866--21837906 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 15
21837856 GGGGTTGTTT
21837866 ATTAAACTAATTAAC
1 ATTAAACTAATTAAC
21837881 --TAAACTAATTAAC
1 ATTAAACTAATTAAC
21837894 TAATTAAACTAAT
1 --ATTAAACTAAT
21837907 GCACAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 13 0.59
17 9 0.41
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
ATTAAACTAATTAAC
Found at i:21838724 original size:13 final size:13
Alignment explanation
Indices: 21838706--21838730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21838696 GCTCGGCAGG
21838706 GACACGCCCGTGC
1 GACACGCCCGTGC
21838719 GACACGCCCGTG
1 GACACGCCCGTG
21838731 TTTGATGACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.44, G:0.32, T:0.08
Consensus pattern (13 bp):
GACACGCCCGTGC
Found at i:21853611 original size:37 final size:36
Alignment explanation
Indices: 21853561--21853647 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
21853551 TACGAAGTCT
21853561 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
21853597 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
21853634 TCACCCGGAACATA
1 T-ACCCGG-ACATA
21853648 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:21853793 original size:49 final size:49
Alignment explanation
Indices: 21853716--21854026 Score: 480
Period size: 49 Copynumber: 6.4 Consensus size: 49
21853706 TTTACCACAT
*
21853716 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
21853765 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
21853814 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
21853863 ATATACATACATTTTC-CATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
21853911 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
21853960 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
21854009 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
21854027 GAATCTTGAT
Statistics
Matches: 248, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 47 0.19
49 201 0.81
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:21853948 original size:146 final size:147
Alignment explanation
Indices: 21853716--21854026 Score: 498
Period size: 146 Copynumber: 2.1 Consensus size: 147
21853706 TTTACCACAT
* * *
21853716 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATATACTTTC
1 ATATATATACATTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
* *
21853781 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCACATTCATCACATCGG
66 ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG
*
21853846 CCATTAGGCCTTATCAC
131 CCATTAGGCCTCATCAC
* *
21853863 ATATACATACATTTTC-CATTCACCACATCGGCCATTAGGCCTTATCACATATACATACATTTTC
1 ATATATATACATTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
* * * * *
21853927 GCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCACATCGG
66 ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG
21853992 CCATTAGGCCTCATCAC
131 CCATTAGGCCTCATCAC
21854009 ATATATATACATTTTCAC
1 ATATATATACATTTTCAC
21854027 GAATCTTGAT
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
146 134 0.90
147 15 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (147 bp):
ATATATATACATTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
ACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG
CCATTAGGCCTCATCAC
Found at i:21857972 original size:79 final size:80
Alignment explanation
Indices: 21857864--21858085 Score: 369
Period size: 79 Copynumber: 2.8 Consensus size: 80
21857854 CCAGCATGAT
* * * * *
21857864 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
21857928 CATCACTAGCACGAA
66 CATCACTAGCACGAA
*
21857943 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
21858008 CATCACTAGCACGAA
66 CATCACTAGCACGAA
21858023 TGCT-CTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
21858086 TAACCACAAG
Statistics
Matches: 135, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
78 7 0.05
79 93 0.69
80 35 0.26
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:21858075 original size:119 final size:118
Alignment explanation
Indices: 21857864--21858085 Score: 365
Period size: 119 Copynumber: 1.9 Consensus size: 118
21857854 CCAGCATGAT
* * *
21857864 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATAC
1 TGCTCCTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATAC
21857929 ATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCCTCGGAACTTAG-CCGGATACATCACTAGCACGAA
* *
21857983 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTC-TCGGAACTTAGTCCGGATA
1 TGCTCCTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATA
*
21858047 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATA
65 CATCACTAGCACGAATGCTCCTCGGAACTTAGCCGGATA
21858086 TAACCACAAG
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
118 9 0.09
119 87 0.91
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (118 bp):
TGCTCCTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATAC
ATCACTAGCACGAATGCTCCTCGGAACTTAGCCGGATACATCACTAGCACGAA
Found at i:21858098 original size:40 final size:40
Alignment explanation
Indices: 21857864--21858085 Score: 369
Period size: 40 Copynumber: 5.6 Consensus size: 40
21857854 CCAGCATGAT
* * * *
21857864 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
21857904 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
21857943 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
21857983 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
21858023 TGCTC-TCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
21858062 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
21858086 TAACCACAAG
Statistics
Matches: 175, Mismatches: 5, Indels: 5
0.95 0.03 0.03
Matches are distributed among these distances:
39 80 0.46
40 95 0.54
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:21858109 original size:39 final size:39
Alignment explanation
Indices: 21857890--21858202 Score: 287
Period size: 40 Copynumber: 7.9 Consensus size: 39
21857880 GCCCGGATGC
*
21857890 ATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATAA
* *
21857929 ATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATAA
* *
21857969 ATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATAA
*
21858009 ATCACTAGCACGAATG-CTCTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGCCT-TCGGAACTTAGTCCGGATAA
21858048 ATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATATA
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATA-A
* * ** ** *
21858088 ACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGGTATA
1 ATCACTAGCACGAA-TGCCTTCGGAACTTAGTCCGGATA-A
* ** *
21858128 A-CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 ATC-ACT-AGCACGAATGCCTTCGGAACTTAGTCCGGATA-A
* ** * *
21858168 TTCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 ATCACTAGCACGAATGCCTTCGGAACTTAGTCCGG
21858203 GTATCATTCA
Statistics
Matches: 247, Mismatches: 15, Indels: 23
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.00
39 78 0.32
40 162 0.66
41 6 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
ATCACTAGCACGAATGCCTTCGGAACTTAGTCCGGATAA
Found at i:21858144 original size:119 final size:119
Alignment explanation
Indices: 21857881--21858199 Score: 328
Period size: 119 Copynumber: 2.7 Consensus size: 119
21857871 CGGGACCTAG
* * *
21857881 CCCGGATGCATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * * * *
21857945 CTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
66 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCCTCGGAACTTAA
* * *
21858000 TCCGGATACATCACTAGCACGAATGCTC-TCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* **
21858064 CTCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAA
66 CTCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCCTCGGAACTTAA
* * ** * * **
21858118 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA
1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGA
*
21858181 ATGC-CTTCGGGACTTAGCC
63 ATGCTCTTCGGAACTTAGCC
21858200 CGGGTATCAT
Statistics
Matches: 171, Mismatches: 22, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
118 29 0.17
119 127 0.74
120 15 0.09
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (119 bp):
CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
CTCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCCTCGGAACTTAA
Found at i:21860111 original size:37 final size:36
Alignment explanation
Indices: 21860061--21860147 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
21860051 TACGAAGTCT
21860061 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
21860097 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
21860134 TCACCCGGAACATA
1 T-ACCCGG-ACATA
21860148 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:21860285 original size:49 final size:49
Alignment explanation
Indices: 21860216--21860575 Score: 569
Period size: 49 Copynumber: 7.4 Consensus size: 49
21860206 TTTACCACAT
*
21860216 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
21860265 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
21860314 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
21860363 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
21860412 ATATACATATACTTTC-CATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
21860460 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
21860509 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
21860558 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
21860576 GAATCTTGAT
Statistics
Matches: 297, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 45 0.15
49 252 0.85
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:21860527 original size:195 final size:197
Alignment explanation
Indices: 21860196--21860562 Score: 576
Period size: 195 Copynumber: 1.9 Consensus size: 197
21860186 ATTCACATTA
* * * *
21860196 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTACCACATATACATATA-ACTTTCACATTCACCACATCGGCCATTAGGCCTTA
* *
21860261 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATAC
65 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACAC
*
21860326 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCACATTCATCACA
130 TTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATATACTTTCACATTCATCACA
21860391 TCG
195 TCG
*
21860394 GCCATTAGGCCTTATCACATATACATAT-ACTTTC-CATTCACCACATCGGCCATTAGGCCTTAT
1 GCCATTAGGCCTTACCACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
* * * * * *
21860457 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATT
66 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
*
21860522 TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATA
131 TTCACATTCACCACATCGGCCATTAGGCCTCATCACATATA
21860563 TATACATTTT
Statistics
Matches: 154, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
195 124 0.81
196 6 0.04
198 24 0.16
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (197 bp):
GCCATTAGGCCTTACCACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
TTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATATACTTTCACATTCATCACAT
CG
Found at i:21864584 original size:10 final size:9
Alignment explanation
Indices: 21864559--21864585 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
21864549 TAAGCCATTT
21864559 ACCTTTTTA
1 ACCTTTTTA
21864568 ACCTTTTTA
1 ACCTTTTTA
21864577 ACCTTTTTA
1 ACCTTTTTA
21864586 TTTTCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (9 bp):
ACCTTTTTA
Found at i:21871088 original size:40 final size:42
Alignment explanation
Indices: 21871023--21871119 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 42
21871013 TAAGTCAGTA
* *
21871023 TCGCTCACTTAGTGCC-TTATATAGCC-AAAGCTAT-GCCAAC
1 TCGCACACTTAGTGCCATTATATAGCCGAAA-CTATAGCAAAC
* **
21871063 TCGCACACTTAGTGCCATT-TGTAGCCGAAACTATATTAAAC
1 TCGCACACTTAGTGCCATTATATAGCCGAAACTATAGCAAAC
21871104 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
21871120 AGCATAGTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 41 0.84
41 8 0.16
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (42 bp):
TCGCACACTTAGTGCCATTATATAGCCGAAACTATAGCAAAC
Found at i:21871939 original size:10 final size:9
Alignment explanation
Indices: 21871914--21871940 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
21871904 TAAGCCATTT
21871914 ACCTTTTTA
1 ACCTTTTTA
21871923 ACCTTTTTA
1 ACCTTTTTA
21871932 ACCTTTTTA
1 ACCTTTTTA
21871941 TTTTCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (9 bp):
ACCTTTTTA
Found at i:21894086 original size:77 final size:77
Alignment explanation
Indices: 21893991--21894179 Score: 333
Period size: 77 Copynumber: 2.4 Consensus size: 77
21893981 AATGTTCGAG
21893991 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAA
21894056 TTGTGCGAGCTA
66 TTGTGCGAGCTA
21894068 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAA
* *
21894133 TTGTGCGAGTTG
66 TTGTGCGAGCTA
* *
21894145 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
21894180 GGTTACCATA
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
77 90 0.84
78 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (77 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAA
TTGTGCGAGCTA
Found at i:21894089 original size:39 final size:39
Alignment explanation
Indices: 21893991--21894179 Score: 319
Period size: 38 Copynumber: 4.9 Consensus size: 39
21893981 AATGTTCGAG
21893991 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
21894030 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
21894068 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
21894107 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
21894145 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
21894180 GGTTACCATA
Statistics
Matches: 143, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
38 74 0.52
39 52 0.36
40 17 0.12
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:21901591 original size:17 final size:18
Alignment explanation
Indices: 21901549--21901597 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
21901539 AGTTGAAAAG
21901549 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
21901568 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
21901585 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
21901598 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:21902540 original size:39 final size:40
Alignment explanation
Indices: 21902417--21902581 Score: 162
Period size: 39 Copynumber: 4.2 Consensus size: 40
21902407 AAATTGAATG
* * *
21902417 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * **
21902456 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
21902496 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
21902535 CTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
21902574 ATATCCGG
1 ATATCCGG
21902582 TTATATTCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
38 6 0.06
39 66 0.63
40 33 0.31
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:21902581 original size:78 final size:79
Alignment explanation
Indices: 21902417--21902581 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
21902407 AAATTGAATG
*
21902417 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
21902482 TTGTGCTAGTGGTT
66 TTGTGCTAGTGATT
* * ** *
21902496 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCT-AGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
21902558 ATTTGTGC-ACGTGATT
64 AATTGTGCTA-GTGATT
21902574 ATATCCGG
1 ATATCCGG
21902582 TTATATTCCG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 36 0.48
79 38 0.51
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGATT
Found at i:21906070 original size:17 final size:18
Alignment explanation
Indices: 21906028--21906076 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
21906018 AGTTGAAAAG
21906028 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
21906047 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
21906064 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
21906077 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:21906996 original size:40 final size:40
Alignment explanation
Indices: 21906894--21907087 Score: 198
Period size: 40 Copynumber: 4.8 Consensus size: 40
21906884 AAATTGAATG
* * * * *
21906894 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
21906934 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
21906974 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAG-TT
* * *
21907015 AAATCCGGGCTAAGA-CCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
21907054 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA
21907088 AATCGTGATA
Statistics
Matches: 135, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 20 0.15
40 97 0.72
41 18 0.13
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:21907101 original size:80 final size:80
Alignment explanation
Indices: 21906896--21907103 Score: 226
Period size: 80 Copynumber: 2.6 Consensus size: 80
21906886 ATTGAATGAT
* * * * *
21906896 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAAT-TTATATCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AAATGTTATATCCGGGCTAAGACCCGAAGGCAA
* *
21906960 TTGTGCTAGTAGCTAT
65 TTGTGCAAGTAGCTAA
* * *
21906976 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTTGTTTAAATCCGGGCTAAGA-CCGAAGGC-
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAA-ATG-TTATATCCGGGCTAAGACCCGAAGGCA
* *
21907038 ATTCGTGCAAGTTGTTAA
64 ATT-GTGCAAGTAGCTAA
*
21907056 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAATCGTGATATCCGGG
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAAT-GTTATATCCGGG
21907104 TAAAGTCCCG
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
78 2 0.02
79 4 0.04
80 82 0.77
81 18 0.17
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAATGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTAGCTAA
Found at i:21908719 original size:27 final size:28
Alignment explanation
Indices: 21908660--21908729 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
21908650 AAATTTGTAC
21908660 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
21908688 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
21908715 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
21908730 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:21908740 original size:27 final size:27
Alignment explanation
Indices: 21908661--21908742 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
21908651 AATTTGTACA
* * *
21908661 GCACTAAGTGTGCGAGTTTGA-TCATATA
1 GCACTAAGTGTGCGAG-CTCACT-ATATG
* * *
21908689 GCACTAAGTGTGCGAGTTGATTATATG
1 GCACTAAGTGTGCGAGCTCACTATATG
21908716 GCACTAAGTGTGCG-GACTCACTATATG
1 GCACTAAGTGTGCGAG-CTCACTATATG
21908743 CTTTTGAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.62
28 17 0.35
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCACTATATG
Found at i:21910474 original size:46 final size:45
Alignment explanation
Indices: 21910424--21910595 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
21910414 TGGTTGAGCA
21910424 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
21910470 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
21910516 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
21910562 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
21910596 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:21910536 original size:92 final size:92
Alignment explanation
Indices: 21910421--21910590 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
21910411 GGATGGTTGA
* *
21910421 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21910486 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
21910513 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21910578 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
21910591 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:21917974 original size:46 final size:46
Alignment explanation
Indices: 21917909--21918081 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
21917899 TGTTCGAGGA
* *
21917909 TCCGAACTCATTGAATTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
21917955 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* *
21918000 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
21918048 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
21918082 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 2 0.02
46 56 0.53
47 26 0.25
48 2 0.02
50 3 0.03
51 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:21923113 original size:100 final size:100
Alignment explanation
Indices: 21922940--21923127 Score: 324
Period size: 100 Copynumber: 1.9 Consensus size: 100
21922930 TATGGTGAGG
* *
21922940 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGAATGTGTAGTACT
*
21923005 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACAATGCGTACCCGAAAACTGTGA
*
21923040 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATTATTGGTCGAATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATTGGTCGAATGTGTAGTAC
21923104 TAAGTGCAGGCTACAATGCGTACC
65 TAAGTGCAGGCTACAATGCGTACC
21923128 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
99 1 0.01
100 82 0.99
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGAATGTGTAGTACT
AAGTGCAGGCTACAATGCGTACCCGAAAACTGTGA
Found at i:21923128 original size:49 final size:49
Alignment explanation
Indices: 21922945--21923132 Score: 236
Period size: 49 Copynumber: 3.8 Consensus size: 49
21922935 TGAGGTCACG
* *
21922945 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG-ATAATTGGTCGAA
* * * *
21922994 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATC-ACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-T-TGGTCGA-A
* * *
21923045 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGAA
*
21923094 TGTGTAGTACTAAGTGCAGGCTACAATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
21923133 GCTTCGGCTA
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 75 0.64
50 4 0.03
51 39 0.33
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGAA
Found at i:21924011 original size:30 final size:30
Alignment explanation
Indices: 21923977--21924038 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
21923967 AAAAGCATGG
21923977 TAGTAATTGCTTATTATTTTCATATGAACT
1 TAGTAATTGCTTATTATTTTCATATGAACT
21924007 TAGTAATTGCTTATTATTTTCATATGAACT
1 TAGTAATTGCTTATTATTTTCATATGAACT
21924037 TA
1 TA
21924039 CTAAGCGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (30 bp):
TAGTAATTGCTTATTATTTTCATATGAACT
Found at i:21931496 original size:28 final size:29
Alignment explanation
Indices: 21931405--21931502 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
21931395 ACAGTAAGTC
21931405 CGCACACTTAGTGCT-TA-ATATTCAAAC-
1 CGCACACTTAGTGCTATACA-ATTCAAACT
21931432 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
21931461 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
21931489 CGCACACTTAGTGC
1 CGCACACTTAGTGC
21931503 CAATCTCATT
Statistics
Matches: 68, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
27 15 0.22
28 29 0.43
29 24 0.35
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:21939199 original size:28 final size:29
Alignment explanation
Indices: 21939108--21939205 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
21939098 ACAGTAAGTC
21939108 CGCACACTTAGTGCT-TA-ATATTCAAAC-
1 CGCACACTTAGTGCTATACA-ATTCAAACT
21939135 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
21939164 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
21939192 CGCACACTTAGTGC
1 CGCACACTTAGTGC
21939206 CAATCTCATT
Statistics
Matches: 68, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
27 15 0.22
28 29 0.43
29 24 0.35
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:21944338 original size:46 final size:46
Alignment explanation
Indices: 21944227--21944489 Score: 243
Period size: 46 Copynumber: 5.7 Consensus size: 46
21944217 ATGTAACCAT
* *
21944227 GCCGATGCATGTCCTAGACATGTCTTACACTAGC-AT-ATCTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTCG-AG
* * * *
21944271 GCCGACGCATGTTCCAAACATGTCTGACACTGGCTAAT-ATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-ATCATCTCGAG
* * * * *
21944317 GTCGATGTATGTCCCAGACATGTTTTACACTGGCTCTCATACT-GTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCAT-CTCGAG
** * * * * * *
21944363 GTTGATGCATGT-CCATACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTCGAG
*
21944408 GCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-GAG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CTCGAG
21944456 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
21944490 ACACAAATCT
Statistics
Matches: 176, Mismatches: 33, Indels: 18
0.78 0.15 0.08
Matches are distributed among these distances:
44 30 0.17
45 31 0.18
46 67 0.38
47 22 0.12
48 25 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTCGAG
Found at i:21944470 original size:139 final size:136
Alignment explanation
Indices: 21944230--21944489 Score: 323
Period size: 139 Copynumber: 1.9 Consensus size: 136
21944220 TAACCATGCC
*
21944230 GATGCATGTCCTAGACATGTCTTACACTAGCATATCTCGTAGCCGACGCATGTTCCAAACATGTC
1 GATGCATGTCCTAGACATGTCTTACACTAGCATATCTCGTAGCCGACGCATGTCCCAAACATGTC
* * * *
21944295 TGACACTGGCTAATATCTCGAGGTCGATGTATGTCCCAGACATGTTTTACACTGGCTCTCATACT
66 TGACACTGGCTAATATATCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACT
21944360 GTGGTT
131 GTGGTT
* * * *
21944366 GATGCATGTCC-ATACATGTCTTACACTAGC-TCTCGTC-TCAATGCCGATGCTATGTCCCAGAC
1 GATGCATGTCCTAGACATGTCTTACACTAGCATATC-TCGT--A-GCCGACGC-ATGTCCCAAAC
*
21944428 ATGGTCTTACACTGGCT-ATCATAAT-GAGGCCGATGCATGTCCCAGACATGTCTTACACTGGC
61 AT-GTCTGACACTGGCTAAT-AT-ATCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGC
21944490 ACACAAATCT
Statistics
Matches: 106, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
134 4 0.04
135 20 0.19
136 12 0.11
137 7 0.07
138 13 0.12
139 49 0.46
140 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (136 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCATATCTCGTAGCCGACGCATGTCCCAAACATGTC
TGACACTGGCTAATATATCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACT
GTGGTT
Found at i:21952214 original size:26 final size:26
Alignment explanation
Indices: 21952168--21952219 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21952158 CACACTATCA
*
21952168 CAGTTTATATGTATAATATGTATAGC
1 CAGTTTATATGTATAACATGTATAGC
**
21952194 CAGTTTATATGTATGGCATGTATAGC
1 CAGTTTATATGTATAACATGTATAGC
21952220 TAGACTCCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
CAGTTTATATGTATAACATGTATAGC
Found at i:21963340 original size:21 final size:20
Alignment explanation
Indices: 21963312--21963350 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
21963302 ATGTGTATTT
21963312 TGAAGTTTATTGATAGATTA
1 TGAAGTTTATTGATAGATTA
*
21963332 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTATTGATAGAT
21963351 ATACAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTATTGATAGATTA
Found at i:21984734 original size:53 final size:53
Alignment explanation
Indices: 21984676--21984884 Score: 193
Period size: 53 Copynumber: 3.9 Consensus size: 53
21984666 CTTTCCTTTT
* * * *
21984676 TAAACTTCCCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * * *
21984729 TAAACTCACCATTGCCATGCCTTGGCATGGTCTTACAAGGGATCTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
** * ** ** * * *
21984782 TAGTAGTTTATCAATGCCATATCTTGACATGGTCTTACATTATTTCCTCGCCTTG
1 TA--AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
21984837 TAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
21984885 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 35, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
53 47 0.40
54 34 0.29
55 36 0.31
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:21987011 original size:28 final size:28
Alignment explanation
Indices: 21986950--21987047 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
21986940 TCACAAATTG
** * *
21986950 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
21986979 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
21987007 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
21987035 GCACTAAGTGTGC
1 GCACTAAGTGTGC
21987048 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:21999362 original size:28 final size:29
Alignment explanation
Indices: 21999263--21999421 Score: 146
Period size: 29 Copynumber: 5.6 Consensus size: 29
21999253 GTGACGAGAT
*
21999263 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
21999292 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
21999321 TGGCACTAAATGTGC-AGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** * ***
21999349 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* * * *
21999378 TGGCACT-TGTGTGCGGGCT-TAAAT-TCG
1 TGGCACTAAGTGTGCGAGCTGGAAATAT-A
21999405 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
21999422 AATCGAGTAG
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 9 0.08
28 39 0.36
29 58 0.54
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:21999380 original size:57 final size:58
Alignment explanation
Indices: 21999259--21999384 Score: 139
Period size: 57 Copynumber: 2.2 Consensus size: 58
21999249 TATGGTGACG
* * * * * *
21999259 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA
1 AGATATGGCACTAAATGTGCGAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
* **
21999316 ATATATGGCACTAAATGTGC-AGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAATGTGCGAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
* *
21999373 GGGTATGGCACT
1 AGATATGGCACT
21999385 TGTGTGCGGG
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 42 0.75
58 14 0.25
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAATGTGCGAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:22001024 original size:40 final size:40
Alignment explanation
Indices: 22000928--22001106 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
22000918 CGAATGATAT
* * * *
22000928 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
22000969 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
22001009 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
22001049 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
22001089 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
22001107 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 91 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:22001062 original size:80 final size:81
Alignment explanation
Indices: 22000928--22001106 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
22000918 CGAATGATAT
* * *
22000928 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
22000993 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
22001009 CCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
22001072 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
22001089 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
22001107 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.69
81 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:22001127 original size:40 final size:40
Alignment explanation
Indices: 22001049--22001132 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
22001039 GTTACTAAAT
* * *
22001049 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
22001089 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
22001129 CCGG
1 CCGG
22001133 TTAAATTTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:22001131 original size:80 final size:80
Alignment explanation
Indices: 22000962--22001132 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 80
22000952 GTGCTAAGTG
* * * *
22000962 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* ** *
22001027 GCATTTATGCGAGTT
66 ACATCGATGCGAGTC
* * *
22001042 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
22001106 GACAATCGA-GCGAGTC
65 GAC-ATCGATGCGAGTC
* *
22001122 GCTATATCCGG
1 ACTAAATCCGG
22001133 TTAAATTTCG
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 72 0.95
81 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACATCGATGCGAGTC
Found at i:22005705 original size:16 final size:16
Alignment explanation
Indices: 22005684--22005717 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
22005674 GAGTTAGTCC
22005684 CTGGTATGGCACCCAT
1 CTGGTATGGCACCCAT
22005700 CTGGTATGGCACCCAT
1 CTGGTATGGCACCCAT
22005716 CT
1 CT
22005718 CAGTTGCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.24, T:0.26
Consensus pattern (16 bp):
CTGGTATGGCACCCAT
Found at i:22008800 original size:49 final size:49
Alignment explanation
Indices: 22008716--22008824 Score: 132
Period size: 49 Copynumber: 2.2 Consensus size: 49
22008706 GTGTGTTAGC
*
22008716 GTAAGACCTGTCTACGACATGGCATCGACACCGATAGATGAGAG-CTAGT
1 GTAAGACCTGTCTACGACATGGCATCGACACCGATAGATGAAAGTC-AGT
* * * *
22008765 GTAAGACCTGTCTAGGACATGGCATTGGC-CTCGATATATGAAAGTCAGT
1 GTAAGACCTGTCTACGACATGGCATCGACAC-CGATAGATGAAAGTCAGT
*
22008814 GTAAGAACTGT
1 GTAAGACCTGT
22008825 TTGGGACACG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 50 0.96
50 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTACGACATGGCATCGACACCGATAGATGAAAGTCAGT
Found at i:22010088 original size:21 final size:19
Alignment explanation
Indices: 22010062--22010122 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 19
22010052 GTCATAATGG
22010062 CCACACTGACGTGCTGCCCTT
1 CCACAC-GACGTG-TGCCCTT
* *
22010083 CCACACGGGCATGTTGCCCTT
1 CCACAC-GACGTG-TGCCCTT
22010104 CCACACGAGCGTGTGCCCT
1 CCACACGA-CGTGTGCCCT
22010123 GTTTTAAGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 7 0.21
21 26 0.79
ACGTcount: A:0.15, C:0.41, G:0.23, T:0.21
Consensus pattern (19 bp):
CCACACGACGTGTGCCCTT
Found at i:22011285 original size:22 final size:22
Alignment explanation
Indices: 22011259--22011300 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22011249 AAATAATTTA
* *
22011259 ATTATGATTTTAAATTTTTATT
1 ATTATAATTTTAAAATTTTATT
22011281 ATTATAATTTTAAAATTTTA
1 ATTATAATTTTAAAATTTTA
22011301 AAATAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTATAATTTTAAAATTTTATT
Found at i:22021044 original size:6 final size:6
Alignment explanation
Indices: 22021033--22021065 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
22021023 GTACTTTGTG
22021033 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
22021066 CGTTGTAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:22021259 original size:18 final size:18
Alignment explanation
Indices: 22021207--22021259 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
22021197 GTTTGCTACG
* *
22021207 GAATAATTGACTGTTACT
1 GAATAAATGACTGTTATT
*
22021225 GAATAAATGATTGTTATT
1 GAATAAATGACTGTTATT
* *
22021243 GTATAACTGACTGTTAT
1 GAATAAATGACTGTTAT
22021260 AGAGTAACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.42
Consensus pattern (18 bp):
GAATAAATGACTGTTATT
Found at i:22027436 original size:6 final size:6
Alignment explanation
Indices: 22027419--22027452 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
22027409 TTGTGTACAT
* *
22027419 TTACTG TGACTG TTACTG TTACTA TTACTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
22027453 CGTTGCAGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
TTACTG
Found at i:22027635 original size:18 final size:18
Alignment explanation
Indices: 22027594--22027646 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
22027584 GTTTGCTATG
* *
22027594 GAATAATTGACTGTTACT
1 GAATAAATGACTGTTATT
22027612 GAATAAATGACTGTTATT
1 GAATAAATGACTGTTATT
* * *
22027630 GTATAACTGAATGTTAT
1 GAATAAATGACTGTTAT
22027647 AGAGTAACTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.40
Consensus pattern (18 bp):
GAATAAATGACTGTTATT
Found at i:22034744 original size:36 final size:39
Alignment explanation
Indices: 22034704--22034775 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 39
22034694 AATAGAGTAA
* *
22034704 TTAAATTT-CTATAAATA-AA-AATACATATATTAAATT
1 TTAAATTTACTAAAAATATAATAAGACATATATTAAATT
*
22034740 TTAAATTTACTAAAAATATAATAAGACATATTTTAA
1 TTAAATTTACTAAAAATATAATAAGACATATATTAA
22034776 CCAACATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 8 0.27
37 8 0.27
38 2 0.07
39 12 0.40
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (39 bp):
TTAAATTTACTAAAAATATAATAAGACATATATTAAATT
Found at i:22034876 original size:3 final size:3
Alignment explanation
Indices: 22034868--22034915 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
22034858 TAAAATGAAT
22034868 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22034916 GTTGTAATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22036240 original size:18 final size:21
Alignment explanation
Indices: 22036219--22036267 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22036209 AATTATATGG
22036219 AAGTGAA-TAA-T-TTTAAAA
1 AAGTGAATTAATTGTTTAAAA
22036237 AAGTGAATTAATTGTTTAAAA
1 AAGTGAATTAATTGTTTAAAA
22036258 AA-TGATATTA
1 AAGTGA-ATTA
22036268 TATAAAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 7 0.26
19 3 0.11
20 4 0.15
21 13 0.48
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (21 bp):
AAGTGAATTAATTGTTTAAAA
Found at i:22036527 original size:21 final size:23
Alignment explanation
Indices: 22036503--22036551 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
22036493 ATTATGTTTT
22036503 TTTTCTAAAT-AATTCAAATT-A
1 TTTTCTAAATAAATTCAAATTAA
* *
22036524 TTTTC-ATATAAATTTAAATTAA
1 TTTTCTAAATAAATTCAAATTAA
22036546 TTTTCT
1 TTTTCT
22036552 GTTGCTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 3 0.13
21 14 0.61
22 6 0.26
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTCTAAATAAATTCAAATTAA
Found at i:22040081 original size:17 final size:18
Alignment explanation
Indices: 22040048--22040092 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
22040038 GACTTTTTTA
22040048 TATT-TTATTATTGTATT
1 TATTATTATTATTGTATT
*
22040065 TATTATTATT-TTTTATT
1 TATTATTATTATTGTATT
*
22040082 TTTTATTATTA
1 TATTATTATTA
22040093 CTTCTATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TATTATTATTATTGTATT
Found at i:22040086 original size:20 final size:23
Alignment explanation
Indices: 22040048--22040101 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 23
22040038 GACTTTTTTA
22040048 TATTTTATTATTGTATTTATTAT
1 TATTTTATTATTGTATTTATTAT
22040071 TATTTT-TTATT-T-TTTATTAT
1 TATTTTATTATTGTATTTATTAT
*
22040091 TACTTCTATTA
1 TA-TTTTATTA
22040102 ATATCATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 10 0.36
21 4 0.14
22 8 0.29
23 6 0.21
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (23 bp):
TATTTTATTATTGTATTTATTAT
Found at i:22040284 original size:27 final size:24
Alignment explanation
Indices: 22040211--22040284 Score: 60
Period size: 27 Copynumber: 2.8 Consensus size: 24
22040201 TCCCTTTTGC
22040211 AAATTTGTATTTTACTTACTTATTTCA
1 AAATTT-TATTTTA-TTA-TTATTTCA
22040238 AAATTTT-TTTATATAGTATTGATTTCA
1 AAATTTTATTT-TAT--TATT-ATTTCA
22040265 AGTAATTTTATTTTATTATT
1 A--AATTTTATTTTATTATT
22040285 TTTGATATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
25 4 0.10
26 5 0.12
27 19 0.47
29 9 0.22
30 3 0.08
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.58
Consensus pattern (24 bp):
AAATTTTATTTTATTATTATTTCA
Found at i:22040450 original size:25 final size:25
Alignment explanation
Indices: 22040417--22040473 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
22040407 AAATTAATTC
22040417 ATATATTGTTTATTTTGAGTTTTTT
1 ATATATTGTTTATTTTGAGTTTTTT
22040442 ATATATTGTTTATTTTGAGTTTTTT
1 ATATATTGTTTATTTTGAGTTTTTT
22040467 ATATATT
1 ATATATT
22040474 ATTTTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.67
Consensus pattern (25 bp):
ATATATTGTTTATTTTGAGTTTTTT
Found at i:22040574 original size:22 final size:21
Alignment explanation
Indices: 22040548--22040597 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
22040538 CTTTTATCAC
22040548 ATTAT-ATATTATAAATTCATTT
1 ATTATCAT-TTATAAATT-ATTT
*
22040570 ATTATCATTTTTAAATTATTT
1 ATTATCATTTATAAATTATTT
22040591 -TTA-CATT
1 ATTATCATT
22040598 CTATTTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.15
20 3 0.12
21 4 0.15
22 13 0.50
23 2 0.08
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATCATTTATAAATTATTT
Found at i:22053183 original size:29 final size:29
Alignment explanation
Indices: 22053082--22053175 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
22053072 GTGACGAGAT
22053082 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
22053111 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
22053140 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
22053169 CGGCACT
1 TGGCACT
22053176 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:22053212 original size:58 final size:58
Alignment explanation
Indices: 22053078--22053205 Score: 170
Period size: 58 Copynumber: 2.2 Consensus size: 58
22053068 TACGGTGACG
* *
22053078 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
22053135 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* *
22053193 GGGTATGGCACTA
1 AGATATGGCACTA
22053206 TATGTGCGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:22053281 original size:2 final size:2
Alignment explanation
Indices: 22053276--22053302 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22053266 GTGCGTACTC
22053276 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22053303 CTCCGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22056099 original size:44 final size:44
Alignment explanation
Indices: 22056051--22056173 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 44
22056041 GCCACTAGCT
* * *
22056051 TTATCTCTCTGAAGTAGCAGTGGAGCAGATTGAGATAGCAAGTC
1 TTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAATAGCAAATC
* *
22056095 TTATCTCCCTGAAGTGGCAGTGGAGCAGACTGAAAATAGCAAATC
1 TTATCTCCCTGAAGTAGCAGTGGAGCAGATTG-AAATAGCAAATC
* * *
22056140 TTATATCCCTGAAG-ATGCAATGGAACAGATTGAA
1 TTATCTCCCTGAAGTA-GCAGTGGAGCAGATTGAA
22056174 GCTATAAATA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 31 0.46
45 36 0.54
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (44 bp):
TTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAATAGCAAATC
Found at i:22058996 original size:3 final size:3
Alignment explanation
Indices: 22058988--22059052 Score: 57
Period size: 3 Copynumber: 22.0 Consensus size: 3
22058978 ACATTTTTTA
*
22058988 TAT TAT TAT TAT T-G TATT TAT TAT TAT TAT TATT TAT T-T T-T TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T TAT TAT TAT TAT
*
22059032 TAT TACT T-C TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT
22059053 CATCATACTA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 6 0.12
3 39 0.75
4 7 0.13
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:22059007 original size:20 final size:19
Alignment explanation
Indices: 22058980--22059036 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 19
22058970 TTAATTAGAC
22058980 ATTT-TTTATATTATTATT
1 ATTTATTTATATTATTATT
22058998 ATTGTATTTATTATTATTATT
1 ATT-TATTTA-TATTATTATT
22059019 ATTTATTT-T-TTATTATT
1 ATTTATTTATATTATTATT
22059036 A
1 A
22059037 CTTCTATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.25
18 4 0.11
19 1 0.03
20 9 0.25
21 13 0.36
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTATTTATATTATTATT
Found at i:22062585 original size:75 final size:75
Alignment explanation
Indices: 22062504--22062654 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
22062494 AATTTGTCAA
22062504 TTTTTTAAGGAGACAAAATGCAATCTGATTCTTAGTATAAAGACCTCCATGGTATTTTTACCCAA
1 TTTTTTAAGGAGACAAAATGCAATCTGATTCTTAGTATAAAGACCTCCATGGTATTTTTACCCAA
22062569 CTTAATTCAT
66 CTTAATTCAT
*
22062579 TTTTTTAAGGAGACAAAATGCAATCTGATTCTTAGTATAAAGACCTCTATGGTATTTTTACCCAA
1 TTTTTTAAGGAGACAAAATGCAATCTGATTCTTAGTATAAAGACCTCCATGGTATTTTTACCCAA
22062644 CTTAATTCAT
66 CTTAATTCAT
22062654 T
1 T
22062655 CAATTAATAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (75 bp):
TTTTTTAAGGAGACAAAATGCAATCTGATTCTTAGTATAAAGACCTCCATGGTATTTTTACCCAA
CTTAATTCAT
Found at i:22073660 original size:20 final size:20
Alignment explanation
Indices: 22073635--22073674 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
22073625 AGAGGATTAA
*
22073635 ATTGATAAAAAAAAGCTTTG
1 ATTGATAAAAAAAAACTTTG
22073655 ATTGATAAAAAAAAACTTTG
1 ATTGATAAAAAAAAACTTTG
22073675 GCATGAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (20 bp):
ATTGATAAAAAAAAACTTTG
Found at i:22074389 original size:43 final size:43
Alignment explanation
Indices: 22074342--22074433 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
22074332 TATTTATAGG
* * * *
22074342 TTTCACCGACCAGTGCTGGGCACACATGTATAATATTTGTCAA
1 TTTCACCAACCAGTGCTGAGCAAACATATATAATATTTGTCAA
* *
22074385 TTTCACCAATCAGTGCTGAGCAAACATATATAATATTTGTCAG
1 TTTCACCAACCAGTGCTGAGCAAACATATATAATATTTGTCAA
22074428 TTTCAC
1 TTTCAC
22074434 TAAACAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (43 bp):
TTTCACCAACCAGTGCTGAGCAAACATATATAATATTTGTCAA
Found at i:22082559 original size:40 final size:40
Alignment explanation
Indices: 22082475--22082659 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
22082465 TCGAATGATG
* *
22082475 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
22082514 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
22082555 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22082594 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
22082633 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22082660 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22082611 original size:79 final size:81
Alignment explanation
Indices: 22082475--22082657 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
22082465 TCGAATGATG
* *
22082475 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
22082539 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
22082554 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
22082616 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
22082634 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22082658 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:22082681 original size:79 final size:79
Alignment explanation
Indices: 22082528--22082692 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
22082518 GGACTAAGAT
* * ** *
22082528 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTATTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
22082593 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
22082607 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
22082670 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
22082686 CCGAAGG
1 CCGAAGG
22082693 TACGTGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.67
80 22 0.31
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:22087332 original size:21 final size:20
Alignment explanation
Indices: 22087301--22087358 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
22087291 TACGGTCTAT
22087301 AAAATAATAAATTAAAATTAC
1 AAAA-AATAAATTAAAATTAC
*
22087322 ATAAAAATAAATTAAAATTGC
1 A-AAAAATAAATTAAAATTAC
*
22087343 AAAAGATAAATATAAA
1 AAAAAATAAAT-TAAA
22087359 TAGACTGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.27
21 21 0.64
22 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAAAATAAATTAAAATTAC
Found at i:22087914 original size:33 final size:34
Alignment explanation
Indices: 22087867--22087931 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
22087857 TTGTTTTACA
22087867 ATCAGATCTCTTGAA-AAAAAAATAAACTAAACT
1 ATCAGATCTCTTGAAGAAAAAAATAAACTAAACT
* *
22087900 ATCAGATCTTTTGAAGAAACAAATAAACTAAA
1 ATCAGATCTCTTGAAGAAAAAAATAAACTAAA
22087932 TTATGAAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.54, C:0.14, G:0.08, T:0.25
Consensus pattern (34 bp):
ATCAGATCTCTTGAAGAAAAAAATAAACTAAACT
Found at i:22094775 original size:13 final size:13
Alignment explanation
Indices: 22094756--22094790 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
22094746 TTAATGAGAT
22094756 AAAAATAAATAATG
1 AAAAATAAATAA-G
22094770 -AAAATAAATAAG
1 AAAAATAAATAAG
22094782 AAAAATAAA
1 AAAAATAAA
22094791 GAAATGACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (13 bp):
AAAAATAAATAAG
Found at i:22100200 original size:48 final size:48
Alignment explanation
Indices: 22100114--22100245 Score: 160
Period size: 48 Copynumber: 2.8 Consensus size: 48
22100104 ATGTGTTATG
* * *
22100114 TGTGATCCCATGTAAGACCACGTCTTGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATA
* * *
22100162 TGTGATCCCATGTAAGACCATATCTGGGATATGACATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATA
* **
22100210 TATGAT--TTTGTGAAGACCATGTCTGGGACATGACAT
1 TGTGATCCCATGT-AAGACCATGTCTGGGACATGACAT
22100246 CGATATGAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
46 3 0.04
47 22 0.31
48 47 0.65
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATA
Found at i:22103558 original size:20 final size:20
Alignment explanation
Indices: 22103535--22103596 Score: 70
Period size: 25 Copynumber: 2.9 Consensus size: 20
22103525 CTCGTTCCAC
22103535 ATTCAATTTAAAGACATACA
1 ATTCAATTTAAAGACATACA
*
22103555 ATTCAATGTCAAGTAAATACATACA
1 ATTCAAT-T----TAAAGACATACA
22103580 ATTCAATTTAAAGACAT
1 ATTCAATTTAAAGACAT
22103597 TTATTTGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
24 1 0.03
25 18 0.51
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (20 bp):
ATTCAATTTAAAGACATACA
Found at i:22105168 original size:43 final size:41
Alignment explanation
Indices: 22105068--22105182 Score: 133
Period size: 40 Copynumber: 2.8 Consensus size: 41
22105058 GACACCGATA
* *
22105068 TATGTGGTTACGTGTAAGACCATGTCAGGGACATCGCATCG
1 TATGTGATTACGTGTAAGACCATGTCTGGGACATCGCATCG
* * * *
22105109 TATTTGATT-CGTGTAAGACCTTGTCTGGGATAGTGGCATCGG
1 TATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGCATC-G
* *
22105151 TATGTGATTACATGTAAGACCACGTCTGGGAC
1 TATGTGATTACGTGTAAGACCATGTCTGGGAC
22105183 GTTGGCATTG
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
40 20 0.33
41 13 0.22
42 9 0.15
43 18 0.30
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (41 bp):
TATGTGATTACGTGTAAGACCATGTCTGGGACATCGCATCG
Found at i:22106710 original size:28 final size:29
Alignment explanation
Indices: 22106652--22106710 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
22106642 TTTATTTCAT
*
22106652 AATTTAACTCCTCAATTTACACTTTTCTC
1 AATTTAACTCCTCAATTGACACTTTTCTC
* *
22106681 AATTTAA-TCC-CTAATTGACATTTTTGTC
1 AATTTAACTCCTC-AATTGACACTTTTCTC
22106709 AA
1 AA
22106711 AAATCACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 1 0.04
28 18 0.69
29 7 0.27
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (29 bp):
AATTTAACTCCTCAATTGACACTTTTCTC
Found at i:22111613 original size:24 final size:24
Alignment explanation
Indices: 22111586--22111656 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
22111576 ATCATAGAAA
22111586 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
22111610 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
22111634 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
22111657 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:22111677 original size:26 final size:24
Alignment explanation
Indices: 22111596--22111666 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
22111586 GTGTACATTG
* * * *
22111596 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
22111620 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
22111644 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
22111667 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:22112513 original size:255 final size:255
Alignment explanation
Indices: 22112058--22112572 Score: 1005
Period size: 255 Copynumber: 2.0 Consensus size: 255
22112048 TTGAATACTC
22112058 ATTT-GGTGTGTTTGTTTGTTTCTTATTTAGATATCTCTGACCATTTTGCGTACTTGGGACCATC
1 ATTTGGGTGTGTTTGTTTGTTTCTTATTTAGATATCTCTGACCATTTTGCGTACTTGGGACCATC
22112122 GTCGAAGTCATCACACCGGCTTGCAACTTTTTGGTACCCTCTTCTTAGTTGGCCTAAGAGAACAT
66 GTCGAAGTCATCACACCGGCTTGCAACTTTTTGGTACCCTCTTCTTAGTTGGCCTAAGAGAACAT
22112187 TTGGGCATGTATAGGCTATTATGTTTTGTTTGAACCCCAATATGTAAACTTTTAGCCATGCGAAT
131 TTGGGCATGTATAGGCTATTATGTTTTGTTTGAACCCCAATATGTAAACTTTTAGCCATGCGAAT
22112252 ATGGCTTAAATGCTAAGTTTGAATTTAGCCATACGGGTGCTTAGTTATAAGGTTCAGTAG
196 ATGGCTTAAATGCTAAGTTTGAATTTAGCCATACGGGTGCTTAGTTATAAGGTTCAGTAG
22112312 ATTTGGGTGTGTTTGTTTGTTTCTTATTTAGATATCTCTGACCATTTTGCGTACTTGGGACCATC
1 ATTTGGGTGTGTTTGTTTGTTTCTTATTTAGATATCTCTGACCATTTTGCGTACTTGGGACCATC
*
22112377 GTCGAAGTCATCACACTGGCTTGCAACTTTTTGGTACCCTCTTCTTAGTTGGCCTAAGAGAACAT
66 GTCGAAGTCATCACACCGGCTTGCAACTTTTTGGTACCCTCTTCTTAGTTGGCCTAAGAGAACAT
22112442 TTGGGCATGTATAGGCTATTATGTTTTGTTTGAACCCCAATATGTAAACTTTTAGCCATGCGAAT
131 TTGGGCATGTATAGGCTATTATGTTTTGTTTGAACCCCAATATGTAAACTTTTAGCCATGCGAAT
*
22112507 ATGGCTTAAATGCTAAGTTTGAATTTAGCCTTACGGGTGCTTAGTTATAAGGTTCAGTAG
196 ATGGCTTAAATGCTAAGTTTGAATTTAGCCATACGGGTGCTTAGTTATAAGGTTCAGTAG
22112567 ATTTGG
1 ATTTGG
22112573 CCTTGATAAT
Statistics
Matches: 258, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
254 4 0.02
255 254 0.98
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (255 bp):
ATTTGGGTGTGTTTGTTTGTTTCTTATTTAGATATCTCTGACCATTTTGCGTACTTGGGACCATC
GTCGAAGTCATCACACCGGCTTGCAACTTTTTGGTACCCTCTTCTTAGTTGGCCTAAGAGAACAT
TTGGGCATGTATAGGCTATTATGTTTTGTTTGAACCCCAATATGTAAACTTTTAGCCATGCGAAT
ATGGCTTAAATGCTAAGTTTGAATTTAGCCATACGGGTGCTTAGTTATAAGGTTCAGTAG
Done.