Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 85 of 427
Found at i:22113109 original size:14 final size:14
Alignment explanation
Indices: 22113090--22113116 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22113080 GGGGAGACTT
22113090 TAACTAATAAACTG
1 TAACTAATAAACTG
22113104 TAACTAATAAACT
1 TAACTAATAAACT
22113117 TTTAGTAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.30
Consensus pattern (14 bp):
TAACTAATAAACTG
Found at i:22117494 original size:40 final size:39
Alignment explanation
Indices: 22117449--22117616 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
22117439 CGGAATATAA
*
22117449 CCGGATTTAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
22117489 CCGGATAGATTAACTTGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
** * *
22117529 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * * * *
22117569 CCGGATATAAATTTCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATAT-AATCACTGCACAAATGCCTTCGGGTCTTAGC
22117609 CCGGATAT
1 CCGGATAT
22117617 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22121317 original size:1 final size:1
Alignment explanation
Indices: 22121311--22121356 Score: 92
Period size: 1 Copynumber: 46.0 Consensus size: 1
22121301 CTCAACATCC
22121311 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
22121357 GGAGTAGTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22125387 original size:40 final size:39
Alignment explanation
Indices: 22125342--22125508 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
22125332 CGGAATATAA
*
22125342 CCGGATTTAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
22125382 CCGGATAGATTAACTTGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
** * *
22125422 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * * *
22125462 CCGGATATAAATTTCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATAT-AATCACTGCACAAATGCCTTCGGGTCTTAGC
22125501 CCGGATAT
1 CCGGATAT
22125509 CATTCAATTT
Statistics
Matches: 102, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
39 14 0.14
40 86 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22134320 original size:53 final size:53
Alignment explanation
Indices: 22134143--22134349 Score: 175
Period size: 53 Copynumber: 3.8 Consensus size: 53
22134133 ATTAGGGTTT
* * * * * *
22134143 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAGGTTTTACAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
22134197 AAGGAAATCATG-ATAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCACGTA-AGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
22134252 AAAGAT-CCCCTGTAAGACCATGCCAAGGCATGGAAATGGTGAGTTCATAAGGC
1 AAGGATACCAC-GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
*
22134305 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
22134350 TAAAAAAGAA
Statistics
Matches: 117, Mismatches: 30, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
53 43 0.37
54 40 0.34
55 33 0.28
56 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:22138399 original size:39 final size:39
Alignment explanation
Indices: 22138327--22138402 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
22138317 TTTAAGCCCG
* *
22138327 GATATAGTACCAGTACGAAGGCTACAGACCTTAAGTCTC
1 GATATAGTACCAGCACGAAGCCTACAGACCTTAAGTCTC
* * * *
22138366 GATATAGTACCAGCATGAAGCCTGCGGATCTTAAGTC
1 GATATAGTACCAGCACGAAGCCTACAGACCTTAAGTC
22138403 CGGATACAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (39 bp):
GATATAGTACCAGCACGAAGCCTACAGACCTTAAGTCTC
Found at i:22138446 original size:40 final size:40
Alignment explanation
Indices: 22138383--22138609 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
22138373 TACCAGCATG
* * *
22138383 AAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGAACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
22138422 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
* * * * *
22138462 AAGCCTAC-GGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
* * *
22138501 AAGCCTGCGGGTCTTTAAGCCCAGATATAATTGCAGCACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
* * * *
22138541 AAGCCTGTGGGTCTTTAAGCACGGATACAATTCCAGTATA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
*
22138581 TAGCCTGCGGGTCTTTAAGCCCGGATACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACA
22138610 CATCAAATAT
Statistics
Matches: 160, Mismatches: 26, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
39 46 0.29
40 114 0.71
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (40 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA
Found at i:22138458 original size:79 final size:79
Alignment explanation
Indices: 22138383--22138609 Score: 321
Period size: 79 Copynumber: 2.9 Consensus size: 79
22138373 TACCAGCATG
22138383 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT
22138448 ACAATTCCAGCACA
66 ACAATTCCAGCACA
* * * * *
22138462 AAGCCTACGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGAT
1 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT
* *
22138527 ATAATTGCAGCACA
66 ACAATTCCAGCACA
* * * * *
22138541 AAGCCTGTGGGTCTTTAAG-CACGGATACAATTCCAGTATATAGCCTGCGGGTCTTTAAGCCCGG
1 AAGCCTGCGGATC-TTAAGTC-CGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGG
22138605 ATACA
64 ATACA
22138610 CATCAAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 82 0.64
80 47 0.36
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (79 bp):
AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT
ACAATTCCAGCACA
Found at i:22156855 original size:24 final size:24
Alignment explanation
Indices: 22156803--22156922 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
22156793 GCTTTATCAT
* *
22156803 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
22156828 ATAACTAGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22156852 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22156876 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22156900 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22156923 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 77 0.88
25 11 0.12
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:22156998 original size:20 final size:20
Alignment explanation
Indices: 22156973--22157032 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
22156963 TATGATTACC
*
22156973 TCATGTGCATATCATATATA
1 TCATGTGCATATCATACATA
*
22156993 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
22157013 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
22157033 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:22157004 original size:11 final size:11
Alignment explanation
Indices: 22156973--22157027 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
22156963 TATGATTACC
22156973 TCATGTGCATA
1 TCATGTGCATA
*
22156984 TCATAT--ATA
1 TCATGTGCATA
22156993 TCATGTGCATA
1 TCATGTGCATA
* *
22157004 TCA--TACATT
1 TCATGTGCATA
22157013 TCATGTGCATA
1 TCATGTGCATA
22157024 TCAT
1 TCAT
22157028 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:22157107 original size:25 final size:25
Alignment explanation
Indices: 22157075--22157122 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22157065 ATACATAAAC
* * *
22157075 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
22157100 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
22157123 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:22158328 original size:27 final size:27
Alignment explanation
Indices: 22158298--22158369 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
22158288 TACCATACAG
* **
22158298 GGGTATTTTGGTAGTTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
22158325 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
22158352 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
22158370 GTAAATCGAG
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:22158547 original size:27 final size:27
Alignment explanation
Indices: 22158361--22158556 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
22158351 AGGGTATTTT
* *
22158361 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
22158388 AGTAATTCTGTAAATC-AGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
22158415 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
22158442 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
22158469 GGTAATTCTGTAAATCGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
22158495 TGATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
22158523 AGTAATTATGTAAAT-TAGGGATAAAAC
1 AGTAATTCTGTAAATCGAGGG-TAAAAC
*
22158550 GGTAATT
1 AGTAATT
22158557 GTAACACCCC
Statistics
Matches: 150, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.03
27 143 0.95
28 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:22158556 original size:54 final size:54
Alignment explanation
Indices: 22158361--22158556 Score: 277
Period size: 54 Copynumber: 3.6 Consensus size: 54
22158351 AGGGTATTTT
* * *
22158361 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC
* *
22158415 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC
* * *
22158469 GGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC
* * *
22158523 AGTAATTATGTAAAT-TAGGGATAAAACGGTAATT
1 AGTAATTCTGTAAATCGAGGG-TAAAATGGTAATT
22158557 GTAACACCCC
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
53 4 0.03
54 122 0.97
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC
Found at i:22159962 original size:40 final size:40
Alignment explanation
Indices: 22159917--22160046 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
22159907 CGGAATATAA
22159917 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
22159957 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
22159997 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
22160037 CCGGATATAA
1 CCGGATATAA
22160047 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22160061 original size:40 final size:40
Alignment explanation
Indices: 22159933--22160084 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
22159923 ATAAGCATGT
* * *
22159933 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
22159973 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
22160013 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
22160053 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
22160085 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:22160067 original size:80 final size:80
Alignment explanation
Indices: 22159933--22160084 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
22159923 ATAAGCATGT
* *
22159933 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
22159998 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
22160013 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
22160076 CCCGGATAT
64 CCCGGATAT
22160085 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:22169501 original size:40 final size:40
Alignment explanation
Indices: 22169456--22169585 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
22169446 CGGAATATAA
22169456 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
22169496 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
22169536 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
22169576 CCGGATATAA
1 CCGGATATAA
22169586 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22169600 original size:40 final size:40
Alignment explanation
Indices: 22169472--22169623 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
22169462 ATAAGCATGT
* * *
22169472 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
22169512 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
22169552 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
22169592 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
22169624 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:22169606 original size:80 final size:80
Alignment explanation
Indices: 22169472--22169623 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
22169462 ATAAGCATGT
* *
22169472 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
22169537 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
22169552 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
22169615 CCCGGATAT
64 CCCGGATAT
22169624 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:22172696 original size:30 final size:30
Alignment explanation
Indices: 22172660--22172790 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
22172650 GACAAGATTG
* * * * *
22172660 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
22172690 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
22172718 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
22172748 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
22172777 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22172791 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:22172751 original size:58 final size:58
Alignment explanation
Indices: 22172660--22172790 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
22172650 GACAAGATTG
* * * * * *
22172660 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
22172718 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
22172777 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22172791 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:22180475 original size:30 final size:30
Alignment explanation
Indices: 22180439--22180536 Score: 128
Period size: 30 Copynumber: 3.3 Consensus size: 30
22180429 GACAAGATTG
* * *
22180439 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
22180469 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
22180497 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
22180527 GCACTAAGTG
1 GCACTAAGTG
22180537 CTGAAAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 23 0.39
30 36 0.61
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:22180551 original size:23 final size:24
Alignment explanation
Indices: 22180512--22180559 Score: 89
Period size: 23 Copynumber: 2.0 Consensus size: 24
22180502 AAGTGTGCGA
22180512 GCTGAAAATTATATAGCACTAAGT
1 GCTGAAAATTATATAGCACTAAGT
22180536 GCTGAAAA-TATATAGCACTAAGT
1 GCTGAAAATTATATAGCACTAAGT
22180559 G
1 G
22180560 TGCGGATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (24 bp):
GCTGAAAATTATATAGCACTAAGT
Found at i:22182201 original size:27 final size:27
Alignment explanation
Indices: 22182161--22182370 Score: 273
Period size: 27 Copynumber: 7.8 Consensus size: 27
22182151 TTGGGCTGTC
22182161 ACAGTAATTCTGTAAATCGAGGGTAAA
1 ACAGTAATTCTGTAAATCGAGGGTAAA
*
22182188 ATAGTAATTCTGTAAA-CTGAGGGTAAA
1 ACAGTAATTCTGTAAATC-GAGGGTAAA
*
22182215 ACGGTAATTCTGTAAATCGAGGGTAAA
1 ACAGTAATTCTGTAAATCGAGGGTAAA
* * **
22182242 ACGGTAATTTTACAAATCGAGGGTAAA
1 ACAGTAATTCTGTAAATCGAGGGTAAA
* *
22182269 AC-GATAATTCTATAAATCAAGGGTAAA
1 ACAG-TAATTCTGTAAATCGAGGGTAAA
*
22182296 ACAGTAATTCTGTAAATCAAGGGTAAA
1 ACAGTAATTCTGTAAATCGAGGGTAAA
*
22182323 ACAATAATTCTGTAAA-CTGAGGGTAAA
1 ACAGTAATTCTGTAAATC-GAGGGTAAA
*
22182350 ACGGTAATTCTGTAAATCGAG
1 ACAGTAATTCTGTAAATCGAG
22182371 AGTACTTTGG
Statistics
Matches: 163, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
26 3 0.02
27 157 0.96
28 3 0.02
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (27 bp):
ACAGTAATTCTGTAAATCGAGGGTAAA
Found at i:22185304 original size:24 final size:24
Alignment explanation
Indices: 22185252--22185347 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
22185242 GCTTTATCAT
* *
22185252 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
22185277 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22185301 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22185325 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22185348 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 54 0.82
25 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:22185423 original size:20 final size:20
Alignment explanation
Indices: 22185398--22185457 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
22185388 TATGATTACC
22185398 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
22185418 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
22185438 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
22185458 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:22185428 original size:11 final size:11
Alignment explanation
Indices: 22185398--22185452 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
22185388 TATGATTACC
22185398 TCATGTGCATA
1 TCATGTGCATA
*
22185409 TCA--TACATA
1 TCATGTGCATA
22185418 TCATGTGCATA
1 TCATGTGCATA
* *
22185429 TCA--TACATT
1 TCATGTGCATA
22185438 TCATGTGCATA
1 TCATGTGCATA
22185449 TCAT
1 TCAT
22185453 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:22185532 original size:25 final size:25
Alignment explanation
Indices: 22185500--22185547 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22185490 ATACATAAAC
* * *
22185500 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
22185525 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
22185548 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:22186805 original size:27 final size:27
Alignment explanation
Indices: 22186786--22187179 Score: 364
Period size: 27 Copynumber: 14.6 Consensus size: 27
22186776 AAGGGTATTT
*
22186786 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
*
22186813 TAGTAATTCTGTAAATCAGGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* * *
22186840 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* * *
22186867 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** *
22186894 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* **
22186921 T-GATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCAAGGGTAAAA
** * * *
22186948 CGGTAATTATGTAAATTAGGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** *
22186975 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
*
22187002 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-AAGGGTAAAA
** *
22187029 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** * ** *
22187056 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** *
22187083 CGGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
*
22187110 CAGTAATTCTGT-AATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* * *
22187136 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-AAGGGTAAAA
**
22187163 CGGTAATTCTGTAAATC
1 TAGTAATTCTGTAAATC
22187180 GAGAGTACTT
Statistics
Matches: 322, Mismatches: 38, Indels: 13
0.86 0.10 0.03
Matches are distributed among these distances:
26 28 0.09
27 291 0.90
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCAAGGGTAAAA
Found at i:22186836 original size:54 final size:54
Alignment explanation
Indices: 22186787--22187182 Score: 487
Period size: 54 Copynumber: 7.4 Consensus size: 54
22186777 AGGGTATTTT
* * **
22186787 AGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATC-AGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
22186841 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * *
22186895 GGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
22186949 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
22187003 AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * ** * *
22187057 GGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* **
22187111 AGTAATTCTGT-AATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAC
*
22187164 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
22187183 AGTACTTTGG
Statistics
Matches: 297, Mismatches: 38, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.00
53 46 0.15
54 247 0.83
55 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:22186873 original size:81 final size:81
Alignment explanation
Indices: 22186788--22187182 Score: 494
Period size: 81 Copynumber: 4.9 Consensus size: 81
22186778 GGGTATTTTA
* ** *
22186788 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATC-AGGGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAACAGTAATTCTGT
*
22186852 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAACG
* * * *
22186869 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TGATAATTATGT
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGT
*
22186933 AAATCGGGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * *
22186950 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
22187015 AA-CTGAGGGTAAAACG
66 AATC-GAGGGTAAAACG
* * ** * *
22187031 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* *
22187096 AATCAAGGGTAAAACA
66 AATCGAGGGTAAAACG
** *
22187112 GTAATTCTGT-AATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGT
22187175 AAATCGAG
65 AAATCGAG
22187183 AGTACTTTGG
Statistics
Matches: 273, Mismatches: 35, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.00
80 53 0.19
81 216 0.79
82 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:22188280 original size:39 final size:39
Alignment explanation
Indices: 22188223--22188418 Score: 149
Period size: 39 Copynumber: 5.0 Consensus size: 39
22188213 AAAGCCTATG
* * * * *
22188223 GGACTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGC
1 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC
22188262 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC
1 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC
* * * * * * *
22188301 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC
1 -GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC
* * * * * *
22188341 GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC
1 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC
* * * * * * *
22188380 GAGTCTTTAAGCCCGGATATAATTCCAGCACAAAGCCTG
1 G-GACGTTAAGACCAGATATAGTACCAGCACGAAGCCTG
22188419 TGGGTCTTTA
Statistics
Matches: 135, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 71 0.53
40 64 0.47
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (39 bp):
GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC
Found at i:22188318 original size:79 final size:79
Alignment explanation
Indices: 22188226--22188478 Score: 319
Period size: 79 Copynumber: 3.2 Consensus size: 79
22188216 GCCTATGGGA
* * * * * * * * *
22188226 CTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGCGGACGTTAAGACCAGATATAGTACCAGCA
1 CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGACCGGATACAATTCCAGCA
22188291 CGAAGCCTGCGGGT
66 CGAAGCCTGCGGGT
* *
22188305 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGACCGGATACAATTCCAGCA
*
22188370 CGAAGCCTGCGAGT
66 CGAAGCCTGCGGGT
* * * * *
22188384 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGC
1 CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTG-CGGACCTTAAGACCGGATACAATTCCAGC
*
22188449 A-TATAGCCTGCGGGT
65 ACGA-AGCCTGCGGGT
22188464 CTTTAAGCCCGGATA
1 CTTTAAGCCCGGATA
22188479 CACATCAAAT
Statistics
Matches: 152, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 101 0.66
80 51 0.34
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (79 bp):
CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGACCGGATACAATTCCAGCA
CGAAGCCTGCGGGT
Found at i:22188410 original size:119 final size:119
Alignment explanation
Indices: 22188222--22188480 Score: 324
Period size: 119 Copynumber: 2.2 Consensus size: 119
22188212 CAAAGCCTAT
* * * * * * *
22188222 GGGACTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGCGGACGTTAAGACCAGATATAGTACC
1 GGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACGTTAAGACCAGATATAATACC
*
22188287 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC
66 AGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-GATAGCCTGC
* * * * * *
22188341 -GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATATAATTC
1 GGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG-GACGTTAAGACCAGATATAATAC
* *
22188405 CAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTGC
65 CAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAGATAGCCTGC
* *
22188460 GGGTCTTTAAGCCCGGATACA
1 GGGACCTTAAGCCCGGATACA
22188481 CATCAAATAT
Statistics
Matches: 118, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
118 34 0.29
119 67 0.57
120 17 0.14
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (119 bp):
GGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACGTTAAGACCAGATATAATACC
AGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAGATAGCCTGC
Found at i:22188479 original size:40 final size:40
Alignment explanation
Indices: 22188226--22188480 Score: 300
Period size: 40 Copynumber: 6.4 Consensus size: 40
22188216 GCCTATGGGA
* * * * * *
22188226 CTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGC-GGA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT
* * * * * *
22188265 CGTTAAGACCAGATATAGTACCAGCACGAAGCCTGCGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT
*
22188305 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT
* * *
22188344 CCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT
* * *
22188384 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT
*
22188424 CTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGCGGGT
22188464 CTTTAAGCCCGGATACA
1 CTTTAAGCCCGGATACA
22188481 CATCAAATAT
Statistics
Matches: 187, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
39 68 0.36
40 119 0.64
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (40 bp):
CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT
Found at i:22195066 original size:39 final size:39
Alignment explanation
Indices: 22195023--22195250 Score: 131
Period size: 39 Copynumber: 5.8 Consensus size: 39
22195013 CTATGGGACT
* * *
22195023 TTAAGCCCGGATATAGTACTAGTACGAAACCTGCGAACC
1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC
** * * * *
22195062 TTAAGTCTAGATATAGTACCAGCACGAAGCCTGTGGATC
1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC
* * * * ** *
22195101 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCT
1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGC-GAACC
* * * * *
22195141 TTAAG-CCGGATACAAT-TCAGCACGAAGCCTGCGGACC
1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC
* * * * *
22195178 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-AATTCT
1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAA--CC
* * *
22195218 TTAAGCCCGGATATAATTCCAGCAC-AAAGCCTG
1 TTAAGTCCGGATATAGTACCAGCACGAAA-CCTG
22195251 TGGGTCTTTA
Statistics
Matches: 156, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
37 8 0.05
38 27 0.17
39 86 0.55
40 35 0.22
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (39 bp):
TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC
Found at i:22195183 original size:77 final size:79
Alignment explanation
Indices: 22195080--22195312 Score: 319
Period size: 77 Copynumber: 3.0 Consensus size: 79
22195070 AGATATAGTA
* *
22195080 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
22195145 G-CCGGATACAATT
66 GCCCGGATACAATT
***
22195158 -CAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCAATTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
*
22195222 GCCCGGATATAATT
66 GCCCGGATACAATT
* * * * * *
22195236 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGTCTTT
1 CCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGGTCTTT
22195300 AAGCCCGGATACA
64 AAGCCCGGATACA
22195313 CATCAAATAT
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
77 60 0.44
78 11 0.08
79 14 0.10
80 50 0.37
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (79 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCCGGATACAATT
Found at i:22195236 original size:40 final size:40
Alignment explanation
Indices: 22195080--22195312 Score: 280
Period size: 40 Copynumber: 5.9 Consensus size: 40
22195070 AGATATAGTA
* *
22195080 CCAGCACGAAGCCTGTG-GATC-TTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGAG-TCTTTAAGCCCGGATACAATT
*
22195119 CCAGCACGAAGCCTGCGGGTCTTTAAG-CCGGATACAATT
1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT
* * *
22195158 -CAGCACGAAGCCTGCG-GACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT
* * *
22195196 CCAGCACGAAGCCTGCAATTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT
* * *
22195236 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT
* *
22195276 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACA
1 CCAGCACGA-AGCCTGCGAGTCTTTAAGCCCGGATACA
22195313 CATCAAATAT
Statistics
Matches: 171, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
37 7 0.04
38 28 0.16
39 46 0.27
40 90 0.53
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT
Found at i:22202011 original size:39 final size:39
Alignment explanation
Indices: 22201954--22202188 Score: 175
Period size: 39 Copynumber: 6.0 Consensus size: 39
22201944 AAAGCCTATG
* * * * *
22201954 GGACTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGC
1 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC
*
22201993 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGT
1 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC
* * * *
22202032 GGATCTTAAGTCC-GAATACAATTCCAGCACGAAGCCTGC
1 GGACCTTAAGTCCAG-ATATAGTACCAGCACGAAGCCTGC
* * * * * * * *
22202071 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCCGC
1 -GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC
* * * *
22202111 GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC
1 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC
* * * * * * *
22202150 GAGTCTTTAAGCCCGGATATAATTCCAGCACAAAGCCTG
1 G-GACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTG
22202189 TGGGTCTTTA
Statistics
Matches: 167, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 101 0.60
40 64 0.38
41 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC
Found at i:22202101 original size:79 final size:79
Alignment explanation
Indices: 22202016--22202250 Score: 355
Period size: 79 Copynumber: 3.0 Consensus size: 79
22202006 AGATATAGTA
*
22202016 CCAGCACGAAGCCTGTGGATCTTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
22202081 GCCCGGATACAATT
66 GCCCGGATACAATT
* * * *
22202095 CCAGCACGAAGCCCGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGTCTTTAA
1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
*
22202160 GCCCGGATATAATT
66 GCCCGGATACAATT
* * * *
22202174 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGTCTTT
1 CCAGCACGAAGCCTGTGGATC-TTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGGTCTTT
22202238 AAGCCCGGATACA
64 AAGCCCGGATACA
22202251 CATCAAATAT
Statistics
Matches: 139, Mismatches: 15, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
79 90 0.65
80 49 0.35
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (79 bp):
CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCCGGATACAATT
Found at i:22202188 original size:40 final size:39
Alignment explanation
Indices: 22201957--22202250 Score: 313
Period size: 40 Copynumber: 7.4 Consensus size: 39
22201947 GCCTATGGGA
* * * * * *
22201957 CTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGCGGA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT
* * * * * * *
22201996 CCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGTGGAT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGG-T
* *
22202036 C-TTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGT
* *
22202075 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCCGCGGA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT
* *
22202114 CCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG-GT
* * *
22202154 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGT
*
22202194 CTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC-GGT
22202234 CTTTAAGCCCGGATACA
1 CTTTAAGCCCGGATACA
22202251 CATCAAATAT
Statistics
Matches: 219, Mismatches: 29, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
39 99 0.45
40 119 0.54
41 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT
Found at i:22208953 original size:39 final size:39
Alignment explanation
Indices: 22208905--22209079 Score: 125
Period size: 39 Copynumber: 4.5 Consensus size: 39
22208895 AAAGCCTATG
* * * *
22208905 GGACTTTAAGCCCGGATATAGTACTAGTACAAAACCTGC
1 GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC
* * * *
22208944 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGT
1 GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC
* * * * * * *
22208983 GGATCTTAAGTCCGGATACAATTCTAGCACGAAGCCTGC
1 GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC
* * * * * * * * *
22209022 GGGTCTTTAAGACCGGATACAATCCCAGCACGAAGCCTGT
1 -GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC
22209062 GGACCTTAAGTCCGGATA
1 GGACCTTAAGTCCGGATA
22209080 CAATTCCAGC
Statistics
Matches: 110, Mismatches: 25, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
39 78 0.71
40 32 0.29
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (39 bp):
GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC
Found at i:22209041 original size:40 final size:40
Alignment explanation
Indices: 22208967--22209201 Score: 287
Period size: 40 Copynumber: 5.9 Consensus size: 40
22208957 AGATATAGTA
* * *
22208967 CCAGCACGAAGCCTGTGGATC-TTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * *
22209006 CTAGCACGAAGCCTGCGGGTCTTTAAGACCGGATACAATC
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * *
22209046 CCAGCACGAAGCCTG-TGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*** *
22209085 CCAGCACGAAGCCTGCAATTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
22209125 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
22209165 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACA
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACA
22209202 CATCAAATAT
Statistics
Matches: 167, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 53 0.32
40 114 0.68
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:22209053 original size:79 final size:79
Alignment explanation
Indices: 22208967--22209201 Score: 337
Period size: 79 Copynumber: 3.0 Consensus size: 79
22208957 AGATATAGTA
*
22208967 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCTAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
*
22209032 GACCGGATACAATC
66 GCCCGGATACAATC
* ***
22209046 CCAGCACGAAGCCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCAATTCTTTAA
1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* *
22209111 GCCCGGATATAATT
66 GCCCGGATACAATC
* * * *
22209125 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGTCTTT
1 CCAGCACGAAGCCTGTGGATC-TTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGGTCTTT
22209189 AAGCCCGGATACA
64 AAGCCCGGATACA
22209202 CATCAAATAT
Statistics
Matches: 137, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 90 0.66
80 47 0.34
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (79 bp):
CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCCGGATACAATC
Found at i:22209082 original size:39 final size:39
Alignment explanation
Indices: 22208939--22209170 Score: 232
Period size: 40 Copynumber: 5.9 Consensus size: 39
22208929 TAGTACAAAA
* * * * *
22208939 CCTGCGGACCTTAAGTCCAGATATAGTACCAGCACGAAG
1 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
* *
22208978 CCTGTGGATCTTAAGTCCGGATACAATTCTAGCACGAAG
1 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
* * * * *
22209017 CCTGCGGGTCTTTAAGACCGGATACAATCCCAGCACGAAG
1 CCTG-TGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
22209057 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
1 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
** * * * *
22209096 CCTG-CAATTCTTTAAGCCCGGATATAATTCCAGCACAAAG
1 CCTGTGGA--CCTTAAGTCCGGATACAATTCCAGCACGAAG
* * *
22209136 CCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
1 CCTGT-GGACCTTAAGTCCGGATACAATTCCAGCA
22209171 TATAGCCTGC
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 70 0.44
40 88 0.55
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (39 bp):
CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
Found at i:22215992 original size:78 final size:79
Alignment explanation
Indices: 22215861--22216114 Score: 298
Period size: 78 Copynumber: 3.2 Consensus size: 79
22215851 GCATATGGGA
* * * * * *
22215861 CTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGCA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCA
22215926 CGAAGCCTGC-AGAT
66 CGAAGCCTGCGAG-T
** *
22215940 C-TTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCA
22216004 CGAAGCCTGCGAGT
66 CGAAGCCTGCGAGT
* * * * * * *
22216018 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGC
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATACCAGC
* *
22216083 A-TATAGCCTGCGGGT
65 ACGA-AGCCTGCGAGT
22216098 CTTTAAGCCCGGATACA
1 CTTTAAGCCCGGATACA
22216115 CATCAAATAT
Statistics
Matches: 151, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
78 66 0.44
79 33 0.22
80 52 0.34
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (79 bp):
CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCA
CGAAGCCTGCGAGT
Found at i:22216038 original size:40 final size:39
Alignment explanation
Indices: 22215861--22216114 Score: 269
Period size: 39 Copynumber: 6.4 Consensus size: 39
22215851 GCATATGGGA
* * * * *
22215861 CTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT
* * * * * *
22215900 CCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGCAGAT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGT
** *
22215940 C-TTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT
* *
22215978 CCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG-GT
* * *
22216018 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGT
*
22216058 CTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGT
1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC-GGT
22216098 CTTTAAGCCCGGATACA
1 CTTTAAGCCCGGATACA
22216115 CATCAAATAT
Statistics
Matches: 188, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 98 0.52
40 87 0.46
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (39 bp):
CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT
Found at i:22222817 original size:39 final size:39
Alignment explanation
Indices: 22222752--22222988 Score: 186
Period size: 39 Copynumber: 6.1 Consensus size: 39
22222742 AAATCCTACA
* * * *
22222752 GGACTTTAAGCCCGGATATAGTACCAGTACGAAGCTTGT
1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT
* *
22222791 GGACCTTATGTCCGGATATAGTACCAGCACGAAGCCTGC
1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT
* * * *
22222830 GGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGT
1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT
*** * * * * * *
22222869 GGGTTTTAAGCCCGGATACAATTCCAACACGAAGCCTGC
1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT
* * * * *
22222908 AGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCG
1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTG-T
* * * * * * *
22222948 GGTCTTTAAGCCCGGATATAATTCTAGCACAAAGCCTGT
1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT
22222987 GG
1 GG
22222989 GTCTTTAAGC
Statistics
Matches: 165, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 134 0.81
40 31 0.19
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (39 bp):
GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT
Found at i:22222886 original size:78 final size:79
Alignment explanation
Indices: 22222802--22223045 Score: 330
Period size: 78 Copynumber: 3.1 Consensus size: 79
22222792 GACCTTATGT
* *
22222802 CCGGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT
*
22222867 GTGGGT-TTTAAGC
66 GCGGGTCTTTAAGC
* * * *
22222880 CCGGATACAATTCCAACACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT
22222945 GCGGGTCTTTAAGC
66 GCGGGTCTTTAAGC
* * * * * *
22222959 CCGGATATAATTCTAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGC
1 CCGGATATAATTCCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACGA-AGC
22223023 CTGCGGGTCTTTAAGC
64 CTGCGGGTCTTTAAGC
*
22223039 CCTGATA
1 CCGGATA
22223046 CACATCAAAT
Statistics
Matches: 145, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
78 64 0.44
79 33 0.23
80 48 0.33
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (79 bp):
CCGGATATAATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT
GCGGGTCTTTAAGC
Found at i:22222971 original size:40 final size:40
Alignment explanation
Indices: 22222814--22223047 Score: 305
Period size: 40 Copynumber: 5.9 Consensus size: 40
22222804 GGATATAGTA
* *
22222814 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
22222853 CCAGCACGAAGCCTGTGGGT-TTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * * *
22222892 CCAACACGAAGCCTGC-AGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
22222931 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * *
22222971 CTAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
22223011 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCTGATACA
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACA
22223048 CATCAAATAT
Statistics
Matches: 168, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 82 0.49
40 85 0.51
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:22229151 original size:31 final size:31
Alignment explanation
Indices: 22229108--22229171 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
22229098 CCTTTTCATA
*
22229108 TTTCATAATTCATAACACTGGGCTGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
22229139 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
22229170 TT
1 TT
22229172 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:22229412 original size:25 final size:26
Alignment explanation
Indices: 22229384--22229459 Score: 115
Period size: 23 Copynumber: 3.1 Consensus size: 26
22229374 GCCTAGCCTC
22229384 TTTTAATAACTGGGGCA-AAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
*
22229409 TTTTAATAACTAGGGCATAAGCCC--
1 TTTTAATAACTGGGGCATAAGCCCTT
22229433 -TTTAATAACTGGGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
22229458 TT
1 TT
22229460 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
23 22 0.49
25 16 0.36
26 7 0.16
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
TTTTAATAACTGGGGCATAAGCCCTT
Found at i:22229536 original size:20 final size:20
Alignment explanation
Indices: 22229513--22229573 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
22229503 GAACATCTTG
22229513 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
22229533 TGTGCATGTCATACATGTCA
1 TGTGCATATCATACATATCA
22229553 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
22229573 T
1 T
22229574 ATTTATCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:22236576 original size:30 final size:31
Alignment explanation
Indices: 22236540--22236602 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
22236530 CCTTTTCATA
22236540 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
22236570 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
22236601 TT
1 TT
22236603 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:22236843 original size:25 final size:26
Alignment explanation
Indices: 22236815--22236890 Score: 124
Period size: 23 Copynumber: 3.1 Consensus size: 26
22236805 GCCTAGCCTC
22236815 TTTTAATAACTGGGGCA-AAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
22236840 TTTTAATAACTGGGGCATAAGCCC--
1 TTTTAATAACTGGGGCATAAGCCCTT
22236864 -TTTAATAACTGGGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
22236889 TT
1 TT
22236891 GCACTTCCTC
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
23 23 0.49
25 17 0.36
26 7 0.15
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
TTTTAATAACTGGGGCATAAGCCCTT
Found at i:22236962 original size:9 final size:9
Alignment explanation
Indices: 22236948--22237004 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
22236938 ATCTCGTGTG
22236948 CATATCATA
1 CATATCATA
*
22236957 CATATCATGTG
1 CATATCA--TA
22236968 CATATCATA
1 CATATCATA
* *
22236977 CATGTCATGTG
1 CATATCA--TA
22236988 CATATCATA
1 CATATCATA
22236997 CATATCAT
1 CATATCAT
22237005 CTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:22236967 original size:20 final size:20
Alignment explanation
Indices: 22236944--22237004 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
22236934 GAACATCTCG
22236944 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
22236964 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
22236984 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
22237004 T
1 T
22237005 CTTTATCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:22237071 original size:25 final size:25
Alignment explanation
Indices: 22237043--22237090 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
22237033 ATATATAAAC
* *
22237043 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
22237068 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
22237091 CTTATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:22248553 original size:28 final size:28
Alignment explanation
Indices: 22248521--22248619 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
22248511 GCAATAAGCC
*
22248521 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
22248549 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
22248577 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
22248606 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22248620 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:22259471 original size:29 final size:28
Alignment explanation
Indices: 22259438--22259510 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
22259428 CCTTCGAGCT
22259438 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
*
22259467 TGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCA
22259495 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22259511 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:22259499 original size:28 final size:29
Alignment explanation
Indices: 22259380--22259510 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
22259370 TACTCGATTT
** * *
22259380 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
22259409 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
22259438 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
22259467 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
22259495 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22259511 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:22268999 original size:93 final size:93
Alignment explanation
Indices: 22268887--22269057 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
22268877 GCCCCTAAGT
*
22268887 GAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGCATCCATAAGTGAACTAGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCA
22268951 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
22268980 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTGGGACTCAATTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
22269045 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22269058 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:22269051 original size:46 final size:46
Alignment explanation
Indices: 22268882--22269054 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
22268872 AACCCGCCCC
*
22268882 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* * *
22268928 TAAGTGAACTAGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
22268976 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
22269021 TAAGTGAACTGGGACTCAATTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22269055 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 56 0.54
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:22269509 original size:30 final size:30
Alignment explanation
Indices: 22269475--22269534 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22269465 ATTTAATACG
22269475 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
22269505 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
22269535 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:22279592 original size:27 final size:27
Alignment explanation
Indices: 22279562--22279636 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
22279552 CAATTTGATG
22279562 AAATGACTAG-TTTACCCTTATGTGGCA
1 AAATGACT-GTTTTACCCTTATGTGGCA
* *
22279589 AAATGACTGTTTTGCTCTTATGTGGCA
1 AAATGACTGTTTTACCCTTATGTGGCA
* *
22279616 AAATGATTGTTTTGCCCTTAT
1 AAATGACTGTTTTACCCTTAT
22279637 ATGGTTAGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTACCCTTATGTGGCA
Found at i:22281181 original size:3 final size:3
Alignment explanation
Indices: 22281173--22281207 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
22281163 ATAATATGAC
*
22281173 ATA ATA ATA ATA ATA ATA ATA ATT ATA AGTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA A
22281208 GTAAATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22284238 original size:24 final size:24
Alignment explanation
Indices: 22284208--22284253 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
22284198 TATAATGTGA
* *
22284208 AAATGACCATTTTTCCCCTAGGTG
1 AAATGACCATTATACCCCTAGGTG
22284232 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
22284254 GATGTGCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTG
Found at i:22284308 original size:10 final size:10
Alignment explanation
Indices: 22284293--22284331 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
22284283 CTGATTTGTA
22284293 CATGATATGC
1 CATGATATGC
22284303 CATGATATGC
1 CATGATATGC
22284313 ACATGATATGC
1 -CATGATATGC
22284324 CATGATAT
1 CATGATAT
22284332 ATTCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:22284308 original size:21 final size:21
Alignment explanation
Indices: 22284292--22284331 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
22284282 ACTGATTTGT
22284292 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
22284313 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
22284332 ATTCATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:22290170 original size:23 final size:23
Alignment explanation
Indices: 22290126--22290171 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22290116 TTTCCATTAT
* *
22290126 ATCATCAATGATAGATCCAATAA
1 ATCATCAATGAGAGATCAAATAA
**
22290149 ATCATCAATGAGATTTCAAATAA
1 ATCATCAATGAGAGATCAAATAA
22290172 CTCACGAACC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (23 bp):
ATCATCAATGAGAGATCAAATAA
Found at i:22297006 original size:30 final size:30
Alignment explanation
Indices: 22296970--22297031 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
22296960 CTTAACAAGA
*
22296970 AAATGTCTCTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAAAAAAATTAAC
*
22297000 AAATGTCTTTAAAATAATAAAAAAATTAAC
1 AAATGTCTCTAAAATAATAAAAAAATTAAC
22297030 AA
1 AA
22297032 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAAAAAAATTAAC
Found at i:22297116 original size:22 final size:22
Alignment explanation
Indices: 22297074--22297138 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
22297064 ACAACAAAGT
*
22297074 AGTAGCAACATAATAGTAAAAC
1 AGTAGCAAAATAATAGTAAAAC
*
22297096 AGTAGCAAAATAGGTAG-AAAAC
1 AGTAGCAAAATA-ATAGTAAAAC
* *
22297118 AATAAG-AAAATAATATTAAAA
1 AGT-AGCAAAATAATAGTAAAA
22297139 AATAGATTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 2 0.06
22 28 0.80
23 5 0.14
ACGTcount: A:0.60, C:0.08, G:0.14, T:0.18
Consensus pattern (22 bp):
AGTAGCAAAATAATAGTAAAAC
Found at i:22306134 original size:46 final size:45
Alignment explanation
Indices: 22306082--22306242 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 45
22306072 TATTTGGGCA
22306082 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTC-GAGTTCACTCATGGATGTGAACG
* *
22306128 TCCGAACTCGTTGAGTTTAGTCCGAGTTCA-TGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTCATGGATGTGAAC---G
* * *
22306173 CATCCGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTCATGGATGTGAACG
* * *
22306221 CCCTAGCTCGTTGAGTTGAGTC
1 TCCGAACTCGTTGAGTTGAGTC
22306243 CGGGTTTGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
45 4 0.04
46 46 0.48
47 28 0.29
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCGAGTTCACTCATGGATGTGAACG
Found at i:22307659 original size:47 final size:47
Alignment explanation
Indices: 22307603--22308051 Score: 682
Period size: 47 Copynumber: 9.6 Consensus size: 47
22307593 CACATCCACG
* * * *
22307603 TTCATCACATTGGCCATCCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
* *
22307650 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
*
22307697 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCAGGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
22307744 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
* *
22307791 TTCATCACATTGGCCATTTGGCCTTATCACATATATGCAGGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
* *
22307838 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
* *
22307885 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
* * *
22307932 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
** * * * *
22307979 TTCATCACATTTCCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
* *
22308026 TTCATCACATTTGTCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
22308052 GCTCATGTAT
Statistics
Matches: 380, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 380 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
Found at i:22307679 original size:22 final size:22
Alignment explanation
Indices: 22307651--22307728 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
22307641 ATGTTCACAT
22307651 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
* * *
22307673 TTATCACATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGGCC
22307697 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
22307720 TTATCACAT
1 TTATCACAT
22307729 ATATGCAGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
22 19 0.44
23 7 0.16
24 7 0.16
25 10 0.23
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:22307866 original size:22 final size:22
Alignment explanation
Indices: 22307841--22307962 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
22307831 GTTCATATTC
22307841 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
**
22307863 ATCACACATAT-G-CATGTTCA-TATT
1 AT--CACAT-TGGCCA--TTCAGCCTT
22307887 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTCAGCCTT
**
22307910 ATCACACATAT-G-CATGTTCA-TATT
1 AT--CACAT-TGGCCA--TTCAGCCTT
22307934 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTCAGCCTT
22307957 ATCACA
1 ATCACA
22307963 CATATGCATG
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 20 0.27
23 20 0.27
24 20 0.27
25 14 0.19
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:22307891 original size:25 final size:25
Alignment explanation
Indices: 22307863--22307940 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
22307853 ATTCAGCCTT
22307863 ATCACACATATGCATGTTCATATTC
1 ATCACACATATGCATGTTCATATTC
**
22307888 AT--CACAT-TGGCCA--TTCAGCCTT-
1 ATCACACATAT-G-CATGTTCA-TATTC
22307910 ATCACACATATGCATGTTCATATTC
1 ATCACACATATGCATGTTCATATTC
22307935 ATCACA
1 ATCACA
22307941 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 7 0.17
23 10 0.25
24 10 0.25
25 13 0.32
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (25 bp):
ATCACACATATGCATGTTCATATTC
Found at i:22307985 original size:25 final size:25
Alignment explanation
Indices: 22307863--22307987 Score: 76
Period size: 24 Copynumber: 5.2 Consensus size: 25
22307853 ATTCAGCCTT
*
22307863 ATCACACATATGCATGTTCATATTC
1 ATCACACATATGCATGTTCACATTC
*
22307888 AT--CACAT-TGGCCA--TTCAGCCTT-
1 ATCACACATAT-G-CATGTTCA-CATTC
*
22307910 ATCACACATATGCATGTTCATATTC
1 ATCACACATATGCATGTTCACATTC
*
22307935 AT--CACAT-TGGCCA--TTCAGCCTT-
1 ATCACACATAT-G-CATGTTCA-CATTC
22307957 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
22307982 ATCACA
1 ATCACA
22307988 TTTCCCATTC
Statistics
Matches: 75, Mismatches: 7, Indels: 36
0.64 0.06 0.31
Matches are distributed among these distances:
22 14 0.19
23 20 0.27
24 21 0.28
25 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.33
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:22310896 original size:48 final size:48
Alignment explanation
Indices: 22310838--22311242 Score: 625
Period size: 48 Copynumber: 8.4 Consensus size: 48
22310828 ATATACACAC
* *
22310838 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
* *
22310886 ATCTCATACATATTTCACATTAGCCATTCGGC-TTACCACATGTACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
22310933 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
22310981 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
22311029 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCAC--ATATACAT
* * *
22311079 TTCTCATGCATATTTCACA-TTGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
* *
22311126 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
* *
22311174 ATCTCATATATTTTTCACAGTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCAC--ATATACAT
*
22311224 TTCTCATACATATTTCACA
1 ATCTCATACATATTTCACA
22311243 TATTCACTAC
Statistics
Matches: 331, Mismatches: 20, Indels: 10
0.92 0.06 0.03
Matches are distributed among these distances:
47 70 0.21
48 194 0.59
49 19 0.06
50 48 0.15
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
Found at i:22311157 original size:193 final size:192
Alignment explanation
Indices: 22310823--22311242 Score: 646
Period size: 193 Copynumber: 2.2 Consensus size: 192
22310813 GGTCATTCGG
* *
22310823 CCACAATATACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CCACAATAT--ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
* *
22310888 CTCATACATATTTCACATTAGCCATTCGGCTTACCACATGTACATATCTCATACATATTTCACAT
64 CTCATACATATTTCACATTAGCCATTCGGCTTACCACATATACATATCTCATACATATTTCACAG
*
22310953 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
129 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA
* * *
22311017 CCAC-ATATACATATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATATACATTT
1 CCACAATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATACATAT
* *
22311081 CTCATGCATATTTCACATT-GCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACA
64 CTCATACATATTTCACATTAGCCATTCGGC-TTACCACATATACATATCTCATACATATTTCACA
* * *
22311145 GTAGCCATTCGGCTTTGCCACATATACATATCTCATATATTTTTCACAGTAGCCATTCGGCTTTA
128 GTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA
*
22311210 CCACATATATACATTTCTCATACATATTTCACA
1 CCACA-ATATACATATCTCATACATATTTCACA
22311243 TATTCACTAC
Statistics
Matches: 206, Mismatches: 15, Indels: 9
0.90 0.07 0.04
Matches are distributed among these distances:
191 40 0.19
192 10 0.05
193 127 0.62
194 4 0.02
195 25 0.12
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (192 bp):
CCACAATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
CATACATATTTCACATTAGCCATTCGGCTTACCACATATACATATCTCATACATATTTCACAGTA
GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA
Found at i:22311166 original size:145 final size:146
Alignment explanation
Indices: 22310838--22311243 Score: 685
Period size: 145 Copynumber: 2.8 Consensus size: 146
22310828 ATATACACAC
* *
22310838 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* * *
22310903 CATTAGCCATTCGGC-TTACCAC--ATGTACATATCTCATACATATTTCACATTAGCCATTCGGC
66 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC
22310965 TTTACCACATATACAT
131 TTTACCACATATACAT
*
22310981 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
*
22311046 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATGCATATTTCACATT-GCCATTCGGC
66 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC
22311110 TTTACCACATATACAT
131 TTTACCACATATACAT
* * * *
22311126 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACATATCTCATATATTTTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
22311191 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACAT
66 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACAT
22311244 ATTCACTACA
Statistics
Matches: 248, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
143 76 0.31
144 7 0.03
145 139 0.56
146 26 0.10
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (146 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC
TTTACCACATATACAT
Found at i:22315006 original size:40 final size:40
Alignment explanation
Indices: 22314948--22315226 Score: 414
Period size: 40 Copynumber: 7.0 Consensus size: 40
22314938 GAATACACAT
*
22314948 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
22314988 CATCGGCACGAATACCCTTCGAGATTTAGCCCGGATATAA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
22315028 CATCGGCACGAATGCCCTTCGGGATTTTGCCCGGACATAA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
22315068 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
22315108 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
22315148 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
22315188 CATCGGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
22315227 TAAATCTCAA
Statistics
Matches: 222, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:22316797 original size:22 final size:22
Alignment explanation
Indices: 22316769--22316846 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
22316759 ATGTTCACAT
22316769 TTATCACATTGGCCTTTCGGCC
1 TTATCACATTGGCCTTTCGGCC
* * * *
22316791 TTATCACATATATGCATGTTC-ACA
1 TTATCACAT-T-GGCCT-TTCGGCC
*
22316815 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCTTTCGGCC
22316838 TTATCACAT
1 TTATCACAT
22316847 ATATACATGT
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
22 19 0.45
23 6 0.14
24 7 0.17
25 10 0.24
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
TTATCACATTGGCCTTTCGGCC
Found at i:22316893 original size:22 final size:22
Alignment explanation
Indices: 22316769--22316893 Score: 67
Period size: 22 Copynumber: 5.4 Consensus size: 22
22316759 ATGTTCACAT
*
22316769 TTATCACATTGGCCTTTCGGCC
1 TTATCACATTGGCCATTCGGCC
* * *
22316791 TTATCACATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGGCC
22316815 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
*** * *
22316838 TTATCACATATATACATGTTC-ACA
1 TTATCACAT-TGGCCA--TTCGGCC
22316862 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
22316885 TTATCACAT
1 TTATCACAT
22316894 ATATGCATGT
Statistics
Matches: 74, Mismatches: 17, Indels: 24
0.64 0.15 0.21
Matches are distributed among these distances:
22 29 0.39
23 12 0.16
24 13 0.18
25 20 0.27
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:22317033 original size:22 final size:22
Alignment explanation
Indices: 22317006--22317081 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
22316996 GTTCATATTC
22317006 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
22317028 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
22317052 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
22317075 ATCACAT
1 ATCACAT
22317082 ATATGCAGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:22317265 original size:47 final size:47
Alignment explanation
Indices: 22316721--22317263 Score: 888
Period size: 47 Copynumber: 11.6 Consensus size: 47
22316711 CACATCCACG
* *
22316721 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
22316768 TTTATCACATTGGCCTTTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
22316815 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
22316862 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
22316909 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
22316956 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
22317003 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
22317050 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCAGGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
22317097 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
22317144 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * *
22317191 TTCATCATATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
22317238 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
22317264 GCTCATGTAT
Statistics
Matches: 472, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 472 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:22320234 original size:2 final size:2
Alignment explanation
Indices: 22320227--22320254 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22320217 AAAGTTTAAG
22320227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22320255 CTGATAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22323771 original size:39 final size:39
Alignment explanation
Indices: 22323727--22323963 Score: 402
Period size: 39 Copynumber: 6.1 Consensus size: 39
22323717 ATGCAAGACA
*
22323727 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
22323766 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
22323805 TTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
22323844 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
22323883 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
22323922 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
22323961 CTG
1 CTG
22323964 ATAATATAAT
Statistics
Matches: 185, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 185 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:22332476 original size:39 final size:39
Alignment explanation
Indices: 22332419--22332568 Score: 254
Period size: 39 Copynumber: 3.9 Consensus size: 39
22332409 ATGCAAGACA
22332419 CTGG-AAT-TATCC-GGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
22332455 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC-TCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
22332493 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
22332532 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCG
22332569 GCTTTGTGCT
Statistics
Matches: 106, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
36 4 0.04
37 3 0.03
38 41 0.39
39 58 0.55
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:22332523 original size:77 final size:74
Alignment explanation
Indices: 22332419--22332565 Score: 258
Period size: 77 Copynumber: 1.9 Consensus size: 74
22332409 ATGCAAGACA
*
22332419 CTGGAATTATCCGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC
1 CTGGAATTATCCGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC
22332484 AGGCTCGTG
66 AGGCTCGTG
22332493 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGG-AAT-TATCC-GGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
22332558 CGCAGGCT
63 CGCAGGCT
22332566 TCGGCTTTGT
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 4 0.06
75 3 0.04
76 5 0.07
77 57 0.83
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (74 bp):
CTGGAATTATCCGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC
AGGCTCGTG
Found at i:22338525 original size:40 final size:40
Alignment explanation
Indices: 22338481--22338745 Score: 401
Period size: 40 Copynumber: 6.6 Consensus size: 40
22338471 CCTACTCGCT
* *
22338481 CAAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACT-AGCA
* *
22338521 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA
* *
22338561 CAAATGCCTTCGGGACTTATCCCGGAATTAGTCACCAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
*
22338601 CAAATGCCTTTGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
*
22338641 CAAATGCCTTCGGGACTTAGCCCGGAATTTGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
*
22338681 CAAATGCCTTCGGGATTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
22338721 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
22338746 TTACTATCCG
Statistics
Matches: 209, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 207 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
Found at i:22346360 original size:40 final size:40
Alignment explanation
Indices: 22346281--22346540 Score: 384
Period size: 40 Copynumber: 6.5 Consensus size: 40
22346271 CTAAACCAAG
* * *
22346281 TGCCTTCGGGATTTAG-CC-GAATATAG-CTACTCGCTCAAA
1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTC-ACTAGCACAAA
* * *
22346320 TGCCTTCAGGACTTAGCCCGG-ATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAA
* *
22346360 TGCCTTCGAGACTTAGCCCGGAATTAGTCACCAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
22346400 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
22346440 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
*
22346480 TGCCTTCGGGATTTAGCCCGGAATTAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
22346520 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
22346541 TTACCATCCA
Statistics
Matches: 204, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.07
40 187 0.92
41 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA
Found at i:22347890 original size:30 final size:30
Alignment explanation
Indices: 22347855--22347916 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
22347845 TTTTCTTTTA
*
22347855 TTATCCTTATTATTTGTTTTATTTATTTCC
1 TTATCCTTATTATTTCTTTTATTTATTTCC
22347885 TTATCCTTATTATTTCTTTTATTTATTTCC
1 TTATCCTTATTATTTCTTTTATTTATTTCC
22347915 TT
1 TT
22347917 TCTTTTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.15, G:0.02, T:0.68
Consensus pattern (30 bp):
TTATCCTTATTATTTCTTTTATTTATTTCC
Found at i:22352369 original size:29 final size:29
Alignment explanation
Indices: 22352336--22352438 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
22352326 GCCCACTAAG
* *
22352336 CCAAATCATATTCATATGGCCTATTAGGC
1 CCAAATCACATTCATATGGCCCATTAGGC
* *
22352365 CCAAATCACCTGT-ATATAGCCCATTAGGC
1 CCAAATCACAT-TCATATGGCCCATTAGGC
* *
22352394 CCAAATCACATTTACATGGCCCATTAGGC
1 CCAAATCACATTCATATGGCCCATTAGGC
*
22352423 CC-AGTCACATTCATAT
1 CCAAATCACATTCATAT
22352439 TCATACTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
28 12 0.19
29 49 0.79
30 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
CCAAATCACATTCATATGGCCCATTAGGC
Found at i:22354993 original size:26 final size:26
Alignment explanation
Indices: 22354964--22355023 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
22354954 TCCCTTTGAA
* * *
22354964 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
22354990 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
22355018 CCATTC
1 TCATTC
22355024 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:22355009 original size:28 final size:28
Alignment explanation
Indices: 22354978--22355049 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
22354968 TCGATATTTT
*
22354978 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
22355006 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
22355034 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
22355050 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:22360016 original size:56 final size:56
Alignment explanation
Indices: 22359954--22360245 Score: 445
Period size: 54 Copynumber: 5.3 Consensus size: 56
22359944 TGATCTCATT
** * *
22359954 TCACACACTTAGTGCCCCAACAACCGATCTTGCA-ACACAGTGCTTGGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATC-TGCACACACAGTGCTCGGTTACGGAAC
22360010 T--CACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC
* *
22360064 TCGCACACACAGTACCTCAACAACCGATCTGCACACACAGTGCT-GGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC
*
22360119 TCGCACACACAGTGCCTCAACAA-CGATCTCGCACACACAGTGCTCGGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATCT-GCACACACAGTGCTCGGTTACGGAAC
*
22360175 TCACACACACAGTGCCTCAACAACCG-TC-ACACACACAGTGCTCGGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC
22360229 TCACACACACAGTGCCT
1 TCACACACACAGTGCCT
22360246 ATGTTCACTT
Statistics
Matches: 222, Mismatches: 8, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
53 4 0.02
54 93 0.42
55 47 0.21
56 76 0.34
57 2 0.01
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17
Consensus pattern (56 bp):
TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC
Found at i:22360069 original size:28 final size:28
Alignment explanation
Indices: 22359988--22360243 Score: 174
Period size: 28 Copynumber: 9.3 Consensus size: 28
22359978 CGATCTTGCA
*
22359988 ACACAGTGCTTGGTTACGGAACT--CAC
1 ACACAGTGCTCGGTTACGGAACTCGCAC
**** * *
22360014 ACACAGTGCCTCAACAACCGATCT-GCAC
1 ACACAGTG-CTCGGTTACGGAACTCGCAC
22360042 ACACAGTGCTCGGTTACGGAACTCGCAC
1 ACACAGTGCTCGGTTACGGAACTCGCAC
* **** * *
22360070 ACACAGTACCTCAACAACCGATCT-GCAC
1 ACACAGT-GCTCGGTTACGGAACTCGCAC
22360098 ACACAGTGCT-GGTTACGGAACTCGCAC
1 ACACAGTGCTCGGTTACGGAACTCGCAC
**** *
22360125 ACACAGTGCCTCAACAAC-GATCTCGCAC
1 ACACAGTG-CTCGGTTACGGAACTCGCAC
*
22360153 ACACAGTGCTCGGTTACGGAACTCACAC
1 ACACAGTGCTCGGTTACGGAACTCGCAC
* *
22360181 ACACAGTGC-C--TCAAC--AACCGTCACAC
1 ACACAGTGCTCGGT-TACGGAA-C-TCGCAC
*
22360207 ACACAGTGCTCGGTTACGGAACTCACAC
1 ACACAGTGCTCGGTTACGGAACTCGCAC
22360235 ACACAGTGC
1 ACACAGTGC
22360244 CTATGTTCAC
Statistics
Matches: 174, Mismatches: 40, Indels: 30
0.71 0.16 0.12
Matches are distributed among these distances:
24 2 0.01
25 2 0.01
26 31 0.18
27 38 0.22
28 86 0.49
29 13 0.07
30 2 0.01
ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16
Consensus pattern (28 bp):
ACACAGTGCTCGGTTACGGAACTCGCAC
Found at i:22362235 original size:26 final size:26
Alignment explanation
Indices: 22362206--22362265 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
22362196 TCCCTTTGAA
* * *
22362206 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
22362232 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
22362260 CCATTC
1 TCATTC
22362266 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:22362251 original size:28 final size:28
Alignment explanation
Indices: 22362220--22362291 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
22362210 TCGATATTTT
*
22362220 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
22362248 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
22362276 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
22362292 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:22367254 original size:29 final size:29
Alignment explanation
Indices: 22367174--22367264 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
22367164 GGACCACTAA
* * *
22367174 GCCC-AATCATATTCATATGGCCAATTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
* * *
22367202 GCCCAAGTCACCTATATATGGCCCATTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
22367231 GCCCAAATCACATTTATATGGCCCGA-TAG
1 GCCCAAATCACATTTATATGGCCC-ATTAG
22367260 GCCCA
1 GCCCA
22367265 GTCATGTTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
28 4 0.08
29 47 0.90
30 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (29 bp):
GCCCAAATCACATTTATATGGCCCATTAG
Found at i:22368731 original size:43 final size:43
Alignment explanation
Indices: 22368666--22368811 Score: 220
Period size: 43 Copynumber: 3.4 Consensus size: 43
22368656 ATTTGAAAAC
* ** *
22368666 AACGCCGCTAAAGGTCCTGACCTTTAGCGGTGCTTTTCCCACA
1 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA
22368709 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA
1 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA
* * *
22368752 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGGTTTTCCAAAA
1 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA
*
22368795 AACGCCGCTAAAGGTCA
1 AACGCCGCCAAAGGTCA
22368812 TAAAAATTAA
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 95 1.00
ACGTcount: A:0.25, C:0.32, G:0.23, T:0.20
Consensus pattern (43 bp):
AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA
Found at i:22373992 original size:23 final size:22
Alignment explanation
Indices: 22373973--22374035 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
22373963 TAAAAAATGC
22373973 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAA-TT
*
22373996 TAATA-AATATAAAT-TAAAAATT
1 TAATACAAT-TACATAT-AAAATT
22374018 TAAATACAATTACATATA
1 T-AATACAATTACATATA
22374036 TAGGATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 7 0.21
23 22 0.67
24 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATACAATTACATATAAAATT
Found at i:22374526 original size:21 final size:21
Alignment explanation
Indices: 22374500--22374561 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
22374490 TCTAAACTCT
*
22374500 AAACCCTTAACCCTTAACCCC
1 AAACCCTTAACCCTTAAACCC
*
22374521 AAACCCTT-ACACCTTAAACTC
1 AAACCCTTAAC-CCTTAAACCC
*
22374542 TAA-CCTTAACCCTTAAACCC
1 AAACCCTTAACCCTTAAACCC
22374562 TAAATTATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (21 bp):
AAACCCTTAACCCTTAAACCC
Found at i:22374651 original size:21 final size:21
Alignment explanation
Indices: 22374625--22374709 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
22374615 ACTCCTAAAC
*
22374625 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
22374646 CTTAAACCATAGTTAACTCAAAAAT
1 CTTAAACCATA---AAC-CATATAT
* *
22374671 CTTAAACCCTAAACTATATAT
1 CTTAAACCATAAACCATATAT
22374692 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
22374710 AACTATAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 30 0.59
22 3 0.06
24 3 0.06
25 15 0.29
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:22374662 original size:46 final size:46
Alignment explanation
Indices: 22374609--22374702 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
22374599 CTTCAAATAC
**
22374609 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
* *
22374655 TAGTTAACTCAAAAATCTTAAACCCTAAACTATATATCTTAAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
22374701 TA
1 TA
22374703 AACCATAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:22374939 original size:41 final size:41
Alignment explanation
Indices: 22374874--22375133 Score: 357
Period size: 41 Copynumber: 6.4 Consensus size: 41
22374864 GTTATATGAC
*
22374874 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
*
22374915 TTTTAGCGGCGTTTTTCCACAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * *
22374956 TTTTAGCGGCATTTTGCCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * *
22374997 TTTTAGCAGCGTTTTTCCACAAGTGCCGCTAATGCTCTGG-
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* *
22375037 TTTTAGCGGCATTTTGCCAAAAGCGCCGCTAATGCTC-GGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* *
22375077 TTTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT
1 TTTTAGCGGCG-TTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
*
22375118 TTTTAGTGGCGTTTTT
1 TTTTAGCGGCGTTTTT
22375134 TGATAAAACG
Statistics
Matches: 193, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 47 0.24
41 139 0.72
42 5 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:22377726 original size:40 final size:40
Alignment explanation
Indices: 22377670--22377746 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
22377660 GATACATAAT
* *
22377670 GACTCTACAGGAAAAGTGTTACTGTGTACTAAATTCAGTA
1 GACTCTACAGGAAAAGTCTTACTATGTACTAAATTCAGTA
*
22377710 GACTCTACAGGCAAAGTCTTACTATGTACTAAATTCA
1 GACTCTACAGGAAAAGTCTTACTATGTACTAAATTCA
22377747 TATAGATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (40 bp):
GACTCTACAGGAAAAGTCTTACTATGTACTAAATTCAGTA
Found at i:22380490 original size:42 final size:42
Alignment explanation
Indices: 22380432--22380540 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
22380422 TCGACGCCTC
* * *
22380432 TGTCTCAGACAGGGTCTTACACGAAAT-T-AGATATGATGCCAA
1 TGTCCCAGACACGGTCTTACACGAAATCTCA-AT-TGAGGCCAA
* * **
22380474 TGTCCCAGACATGGTCTTATACGTAAATCTCAATTGAGGCCTG
1 TGTCCCAGACACGGTCTTACACG-AAATCTCAATTGAGGCCAA
22380517 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
22380541 TGTCTCAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 21 0.38
43 31 0.55
44 3 0.05
45 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCTCAATTGAGGCCAA
Found at i:22382779 original size:2 final size:2
Alignment explanation
Indices: 22382766--22382796 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
22382756 CAATTGTATC
*
22382766 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22382797 AAGCAGTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:22386450 original size:40 final size:41
Alignment explanation
Indices: 22386367--22386474 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 41
22386357 TCGAATGATG
*
22386367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
* * **
22386407 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAA
*
22386447 TCCGGGTTAAGTCCCGAAGGCATTTGTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG
22386475 TGAGCTATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.02
40 49 0.84
41 8 0.14
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
Found at i:22396819 original size:24 final size:24
Alignment explanation
Indices: 22396792--22396838 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
22396782 TATAATATGA
* *
22396792 AAAATGACTATTTTACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
22396816 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
22396839 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:22396901 original size:11 final size:11
Alignment explanation
Indices: 22396885--22396922 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
22396875 ACACGATTGG
22396885 ACATGATATGC
1 ACATGATATGC
22396896 ACATGATATG-
1 ACATGATATGC
*
22396906 -TATGATATGC
1 ACATGATATGC
22396916 ACATGAT
1 ACATGAT
22396923 GTATTCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:22397008 original size:24 final size:25
Alignment explanation
Indices: 22396970--22397039 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
22396960 GAGGAAGTGC
*
22396970 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
* * *
22396996 AAAA-GGCTTTGCCCTAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
22397020 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
22397040 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 17 0.46
25 16 0.43
26 4 0.11
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:22397052 original size:24 final size:24
Alignment explanation
Indices: 22397020--22397066 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
22397010 TAATTTATCA
**
22397020 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
22397043 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
22397067 ATGATAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:22397293 original size:30 final size:31
Alignment explanation
Indices: 22397259--22397341 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
22397249 CGTTTACAGT
22397259 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
22397289 AAAGGCTTCGGCCTAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
22397320 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
22397342 TTGAGATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:22397324 original size:31 final size:30
Alignment explanation
Indices: 22397259--22397336 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
22397249 CGTTTACAGT
*
22397259 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
* *
22397289 AAAGGCTTCGGCCTAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
22397320 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
22397337 ATATGTTGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 21 0.49
31 22 0.51
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:22403604 original size:40 final size:40
Alignment explanation
Indices: 22403549--22403726 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
22403539 CGGATGATAA
22403549 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
22403589 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22403629 CCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22403669 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
22403709 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22403727 TACTCGGTTT
Statistics
Matches: 131, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 17 0.13
40 114 0.87
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.