Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr11 124536837 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 124536837 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 312 characters in sequence are not A, C, G, or T File 85 of 427 Found at i:22113109 original size:14 final size:14 Alignment explanation
Indices: 22113090--22113116 Score: 54 Period size: 14 Copynumber: 1.9 Consensus size: 14 22113080 GGGGAGACTT 22113090 TAACTAATAAACTG 1 TAACTAATAAACTG 22113104 TAACTAATAAACT 1 TAACTAATAAACT 22113117 TTTAGTAGAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.52, C:0.15, G:0.04, T:0.30 Consensus pattern (14 bp): TAACTAATAAACTG Found at i:22117494 original size:40 final size:39 Alignment explanation
Indices: 22117449--22117616 Score: 147 Period size: 40 Copynumber: 4.2 Consensus size: 39 22117439 CGGAATATAA * 22117449 CCGGATTTAATCACGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * * * 22117489 CCGGATAGATTAACTTGCACGAATGCCTTCGGGCCTTAGC 1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC ** * * 22117529 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC ** * * * * * 22117569 CCGGATATAAATTTCAGCATAATTGTCTTCGGGGCTTAGC 1 CCGGATAT-AATCACTGCACAAATGCCTTCGGGTCTTAGC 22117609 CCGGATAT 1 CCGGATAT 22117617 CATTCAATTT Statistics Matches: 102, Mismatches: 24, Indels: 4 0.78 0.18 0.03 Matches are distributed among these distances: 39 1 0.01 40 99 0.97 41 2 0.02 ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27 Consensus pattern (39 bp): CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC Found at i:22121317 original size:1 final size:1 Alignment explanation
Indices: 22121311--22121356 Score: 92 Period size: 1 Copynumber: 46.0 Consensus size: 1 22121301 CTCAACATCC 22121311 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22121357 GGAGTAGTTT Statistics Matches: 45, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 45 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Found at i:22125387 original size:40 final size:39 Alignment explanation
Indices: 22125342--22125508 Score: 147 Period size: 40 Copynumber: 4.2 Consensus size: 39 22125332 CGGAATATAA * 22125342 CCGGATTTAATCACGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * * * 22125382 CCGGATAGATTAACTTGCACGAATGCCTTCGGGCCTTAGC 1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC ** * * 22125422 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC ** * * * * 22125462 CCGGATATAAATTTCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATAT-AATCACTGCACAAATGCCTTCGGGTCTTAGC 22125501 CCGGATAT 1 CCGGATAT 22125509 CATTCAATTT Statistics Matches: 102, Mismatches: 23, Indels: 5 0.78 0.18 0.04 Matches are distributed among these distances: 39 14 0.14 40 86 0.84 41 2 0.02 ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28 Consensus pattern (39 bp): CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC Found at i:22134320 original size:53 final size:53 Alignment explanation
Indices: 22134143--22134349 Score: 175 Period size: 53 Copynumber: 3.8 Consensus size: 53 22134133 ATTAGGGTTT * * * * * * 22134143 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAGGTTTTACAAGGC 1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC * * * * * * * * 22134197 AAGGAAATCATG-ATAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC 1 AAGGATACCACGTA-AGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC * * * * * 22134252 AAAGAT-CCCCTGTAAGACCATGCCAAGGCATGGAAATGGTGAGTTCATAAGGC 1 AAGGATACCAC-GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC * 22134305 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT 1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT 22134350 TAAAAAAGAA Statistics Matches: 117, Mismatches: 30, Indels: 13 0.73 0.19 0.08 Matches are distributed among these distances: 53 43 0.37 54 40 0.34 55 33 0.28 56 1 0.01 ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20 Consensus pattern (53 bp): AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC Found at i:22138399 original size:39 final size:39 Alignment explanation
Indices: 22138327--22138402 Score: 98 Period size: 39 Copynumber: 1.9 Consensus size: 39 22138317 TTTAAGCCCG * * 22138327 GATATAGTACCAGTACGAAGGCTACAGACCTTAAGTCTC 1 GATATAGTACCAGCACGAAGCCTACAGACCTTAAGTCTC * * * * 22138366 GATATAGTACCAGCATGAAGCCTGCGGATCTTAAGTC 1 GATATAGTACCAGCACGAAGCCTACAGACCTTAAGTC 22138403 CGGATACAAT Statistics Matches: 31, Mismatches: 6, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 39 31 1.00 ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24 Consensus pattern (39 bp): GATATAGTACCAGCACGAAGCCTACAGACCTTAAGTCTC Found at i:22138446 original size:40 final size:40 Alignment explanation
Indices: 22138383--22138609 Score: 296 Period size: 40 Copynumber: 5.7 Consensus size: 40 22138373 TACCAGCATG * * * 22138383 AAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGAACA 1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA 22138422 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA 1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA * * * * * 22138462 AAGCCTAC-GGACCTTAAGTCCGGATACAATTCCAGCACG 1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA * * * 22138501 AAGCCTGCGGGTCTTTAAGCCCAGATATAATTGCAGCACA 1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA * * * * 22138541 AAGCCTGTGGGTCTTTAAGCACGGATACAATTCCAGTATA 1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA * 22138581 TAGCCTGCGGGTCTTTAAGCCCGGATACA 1 AAGCCTGCGGGTCTTTAAGCCCGGATACA 22138610 CATCAAATAT Statistics Matches: 160, Mismatches: 26, Indels: 3 0.85 0.14 0.02 Matches are distributed among these distances: 39 46 0.29 40 114 0.71 ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22 Consensus pattern (40 bp): AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACA Found at i:22138458 original size:79 final size:79 Alignment explanation
Indices: 22138383--22138609 Score: 321 Period size: 79 Copynumber: 2.9 Consensus size: 79 22138373 TACCAGCATG 22138383 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT 1 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT 22138448 ACAATTCCAGCACA 66 ACAATTCCAGCACA * * * * * 22138462 AAGCCTACGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGAT 1 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT * * 22138527 ATAATTGCAGCACA 66 ACAATTCCAGCACA * * * * * 22138541 AAGCCTGTGGGTCTTTAAG-CACGGATACAATTCCAGTATATAGCCTGCGGGTCTTTAAGCCCGG 1 AAGCCTGCGGATC-TTAAGTC-CGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGG 22138605 ATACA 64 ATACA 22138610 CATCAAATAT Statistics Matches: 129, Mismatches: 17, Indels: 3 0.87 0.11 0.02 Matches are distributed among these distances: 79 82 0.64 80 47 0.36 ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22 Consensus pattern (79 bp): AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGAACAAAGCCTGCGGGTCTTTAAGCCCGGAT ACAATTCCAGCACA Found at i:22156855 original size:24 final size:24 Alignment explanation
Indices: 22156803--22156922 Score: 179 Period size: 24 Copynumber: 5.0 Consensus size: 24 22156793 GCTTTATCAT * * 22156803 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTG * * 22156828 ATAACTAGGGCAAAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTG 22156852 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTG 22156876 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTG 22156900 ATAACTGGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTT 22156923 TCACTTCCTC Statistics Matches: 88, Mismatches: 6, Indels: 3 0.91 0.06 0.03 Matches are distributed among these distances: 24 77 0.88 25 11 0.12 ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTG Found at i:22156998 original size:20 final size:20 Alignment explanation
Indices: 22156973--22157032 Score: 102 Period size: 20 Copynumber: 3.0 Consensus size: 20 22156963 TATGATTACC * 22156973 TCATGTGCATATCATATATA 1 TCATGTGCATATCATACATA * 22156993 TCATGTGCATATCATACATT 1 TCATGTGCATATCATACATA 22157013 TCATGTGCATATCATACATA 1 TCATGTGCATATCATACATA 22157033 CCATATTTAT Statistics Matches: 37, Mismatches: 3, Indels: 0 0.93 0.08 0.00 Matches are distributed among these distances: 20 37 1.00 ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38 Consensus pattern (20 bp): TCATGTGCATATCATACATA Found at i:22157004 original size:11 final size:11 Alignment explanation
Indices: 22156973--22157027 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 22156963 TATGATTACC 22156973 TCATGTGCATA 1 TCATGTGCATA * 22156984 TCATAT--ATA 1 TCATGTGCATA 22156993 TCATGTGCATA 1 TCATGTGCATA * * 22157004 TCA--TACATT 1 TCATGTGCATA 22157013 TCATGTGCATA 1 TCATGTGCATA 22157024 TCAT 1 TCAT 22157028 ACATACCATA Statistics Matches: 34, Mismatches: 6, Indels: 8 0.71 0.12 0.17 Matches are distributed among these distances: 9 15 0.44 11 19 0.56 ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40 Consensus pattern (11 bp): TCATGTGCATA Found at i:22157107 original size:25 final size:25 Alignment explanation
Indices: 22157075--22157122 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 22157065 ATACATAAAC * * * 22157075 CCTAGGGGTATAATGGTCATTTTTA 1 CCTAGGGGCAAAACGGTCATTTTTA 22157100 CCTAGGGGCAAAACGGTCATTTT 1 CCTAGGGGCAAAACGGTCATTTT 22157123 CATATTATAA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33 Consensus pattern (25 bp): CCTAGGGGCAAAACGGTCATTTTTA Found at i:22158328 original size:27 final size:27 Alignment explanation
Indices: 22158298--22158369 Score: 81 Period size: 27 Copynumber: 2.7 Consensus size: 27 22158288 TACCATACAG * ** 22158298 GGGTATTTTGGTAGTTTTACAAATTAA 1 GGGTATTTTGGTAATTTTACAAACCAA ** * 22158325 GGGTATTGCGGTAATTTCACAAACCAA 1 GGGTATTTTGGTAATTTTACAAACCAA * 22158352 GGGTATTTTAGTAATTTT 1 GGGTATTTTGGTAATTTT 22158370 GTAAATCGAG Statistics Matches: 35, Mismatches: 10, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 27 35 1.00 ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40 Consensus pattern (27 bp): GGGTATTTTGGTAATTTTACAAACCAA Found at i:22158547 original size:27 final size:27 Alignment explanation
Indices: 22158361--22158556 Score: 236 Period size: 27 Copynumber: 7.3 Consensus size: 27 22158351 AGGGTATTTT * * 22158361 AGTAATTTTGTAAATCGAGGGTAAAAT 1 AGTAATTCTGTAAATCGAGGGTAAAAC 22158388 AGTAATTCTGTAAATC-AGGGGTAAAAC 1 AGTAATTCTGTAAATCGA-GGGTAAAAC * * 22158415 AGTAATTCTATAAATCGAGGGTAAAAT 1 AGTAATTCTGTAAATCGAGGGTAAAAC * 22158442 GGTAATTCTGTAAATCGAGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAAC * 22158469 GGTAATTCTGTAAATCGAGGGTAAAA- 1 AGTAATTCTGTAAATCGAGGGTAAAAC * * * 22158495 TGATAATTATGTAAATCGGGGGTAAAAC 1 AG-TAATTCTGTAAATCGAGGGTAAAAC * * 22158523 AGTAATTATGTAAAT-TAGGGATAAAAC 1 AGTAATTCTGTAAATCGAGGG-TAAAAC * 22158550 GGTAATT 1 AGTAATT 22158557 GTAACACCCC Statistics Matches: 150, Mismatches: 14, Indels: 10 0.86 0.08 0.06 Matches are distributed among these distances: 26 5 0.03 27 143 0.95 28 2 0.01 ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29 Consensus pattern (27 bp): AGTAATTCTGTAAATCGAGGGTAAAAC Found at i:22158556 original size:54 final size:54 Alignment explanation
Indices: 22158361--22158556 Score: 277 Period size: 54 Copynumber: 3.6 Consensus size: 54 22158351 AGGGTATTTT * * * 22158361 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAGGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC * * 22158415 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC * * * 22158469 GGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCGGGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC * * * 22158523 AGTAATTATGTAAAT-TAGGGATAAAACGGTAATT 1 AGTAATTCTGTAAATCGAGGG-TAAAATGGTAATT 22158557 GTAACACCCC Statistics Matches: 126, Mismatches: 15, Indels: 2 0.88 0.10 0.01 Matches are distributed among these distances: 53 4 0.03 54 122 0.97 ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29 Consensus pattern (54 bp): AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAAC Found at i:22159962 original size:40 final size:40 Alignment explanation
Indices: 22159917--22160046 Score: 142 Period size: 40 Copynumber: 3.2 Consensus size: 40 22159907 CGGAATATAA 22159917 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC * * * 22159957 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC * * * 22159997 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC 22160037 CCGGATATAA 1 CCGGATATAA 22160047 TTTCCAGCAT Statistics Matches: 74, Mismatches: 9, Indels: 13 0.77 0.09 0.14 Matches are distributed among these distances: 38 1 0.01 39 1 0.01 40 69 0.93 41 3 0.04 ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24 Consensus pattern (40 bp): CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC Found at i:22160061 original size:40 final size:40 Alignment explanation
Indices: 22159933--22160084 Score: 155 Period size: 40 Copynumber: 3.8 Consensus size: 40 22159923 ATAAGCATGT * * * 22159933 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA ** * * 22159973 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA * ** 22160013 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA * * * 22160053 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 22160085 CATTCAATTT Statistics Matches: 93, Mismatches: 16, Indels: 6 0.81 0.14 0.05 Matches are distributed among these distances: 39 2 0.02 40 89 0.96 41 2 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA Found at i:22160067 original size:80 final size:80 Alignment explanation
Indices: 22159933--22160084 Score: 200 Period size: 80 Copynumber: 1.9 Consensus size: 80 22159923 ATAAGCATGT * * 22159933 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC 22159998 CGGATATAGCCGCTA 66 CGGATATAGCCGCTA * * ** * * 22160013 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG 22160076 CCCGGATAT 64 CCCGGATAT 22160085 CATTCAATTT Statistics Matches: 62, Mismatches: 8, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 79 3 0.05 80 59 0.95 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26 Consensus pattern (80 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC CGGATATAGCCGCTA Found at i:22169501 original size:40 final size:40 Alignment explanation
Indices: 22169456--22169585 Score: 142 Period size: 40 Copynumber: 3.2 Consensus size: 40 22169446 CGGAATATAA 22169456 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC * * * 22169496 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC * * * 22169536 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC 22169576 CCGGATATAA 1 CCGGATATAA 22169586 TTTCCAGCAT Statistics Matches: 74, Mismatches: 9, Indels: 13 0.77 0.09 0.14 Matches are distributed among these distances: 38 1 0.01 39 1 0.01 40 69 0.93 41 3 0.04 ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24 Consensus pattern (40 bp): CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC Found at i:22169600 original size:40 final size:40 Alignment explanation
Indices: 22169472--22169623 Score: 155 Period size: 40 Copynumber: 3.8 Consensus size: 40 22169462 ATAAGCATGT * * * 22169472 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA ** * * 22169512 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA * ** 22169552 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA * * * 22169592 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 22169624 CATTCAATTT Statistics Matches: 93, Mismatches: 16, Indels: 6 0.81 0.14 0.05 Matches are distributed among these distances: 39 2 0.02 40 89 0.96 41 2 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA Found at i:22169606 original size:80 final size:80 Alignment explanation
Indices: 22169472--22169623 Score: 200 Period size: 80 Copynumber: 1.9 Consensus size: 80 22169462 ATAAGCATGT * * 22169472 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC 22169537 CGGATATAGCCGCTA 66 CGGATATAGCCGCTA * * ** * * 22169552 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG 22169615 CCCGGATAT 64 CCCGGATAT 22169624 CATTCAATTT Statistics Matches: 62, Mismatches: 8, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 79 3 0.05 80 59 0.95 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26 Consensus pattern (80 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC CGGATATAGCCGCTA Found at i:22172696 original size:30 final size:30 Alignment explanation
Indices: 22172660--22172790 Score: 171 Period size: 30 Copynumber: 4.5 Consensus size: 30 22172650 GACAAGATTG * * * * * 22172660 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGCTGAAAATTATATA * 22172690 GCACTAAGTGTGCGAGTTTG---ATTATATA 1 GCACTAAGTGTGCGAG-CTGAAAATTATATA 22172718 GCACTAAGTGTGCGAGCTGAAAATTATATA 1 GCACTAAGTGTGCGAGCTGAAAATTATATA 22172748 GCACTAAGTGTGCGAGCTGAAAA-TATATA 1 GCACTAAGTGTGCGAGCTGAAAATTATATA 22172777 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 22172791 GATTCACTAT Statistics Matches: 92, Mismatches: 5, Indels: 9 0.87 0.05 0.08 Matches are distributed among these distances: 27 2 0.02 28 22 0.24 29 20 0.22 30 46 0.50 31 2 0.02 ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28 Consensus pattern (30 bp): GCACTAAGTGTGCGAGCTGAAAATTATATA Found at i:22172751 original size:58 final size:58 Alignment explanation
Indices: 22172660--22172790 Score: 174 Period size: 58 Copynumber: 2.2 Consensus size: 58 22172650 GACAAGATTG * * * * * * 22172660 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA 1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA * 22172718 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA 1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA 22172777 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 22172791 GATTCACTAT Statistics Matches: 64, Mismatches: 7, Indels: 3 0.86 0.09 0.04 Matches are distributed among these distances: 57 2 0.03 58 41 0.64 59 21 0.33 ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28 Consensus pattern (58 bp): GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA Found at i:22180475 original size:30 final size:30 Alignment explanation
Indices: 22180439--22180536 Score: 128 Period size: 30 Copynumber: 3.3 Consensus size: 30 22180429 GACAAGATTG * * * 22180439 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTTAAAATTATATA * 22180469 GCACTAAGTGTGCGAGTTT--GATTATATA 1 GCACTAAGTGTGCGAGTTTAAAATTATATA * * 22180497 GCACTAAGTGTGCGAGCTGAAAATTATATA 1 GCACTAAGTGTGCGAGTTTAAAATTATATA 22180527 GCACTAAGTG 1 GCACTAAGTG 22180537 CTGAAAATAT Statistics Matches: 59, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 28 23 0.39 30 36 0.61 ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30 Consensus pattern (30 bp): GCACTAAGTGTGCGAGTTTAAAATTATATA Found at i:22180551 original size:23 final size:24 Alignment explanation
Indices: 22180512--22180559 Score: 89 Period size: 23 Copynumber: 2.0 Consensus size: 24 22180502 AAGTGTGCGA 22180512 GCTGAAAATTATATAGCACTAAGT 1 GCTGAAAATTATATAGCACTAAGT 22180536 GCTGAAAA-TATATAGCACTAAGT 1 GCTGAAAATTATATAGCACTAAGT 22180559 G 1 G 22180560 TGCGGATTCA Statistics Matches: 24, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 23 16 0.67 24 8 0.33 ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27 Consensus pattern (24 bp): GCTGAAAATTATATAGCACTAAGT Found at i:22182201 original size:27 final size:27 Alignment explanation
Indices: 22182161--22182370 Score: 273 Period size: 27 Copynumber: 7.8 Consensus size: 27 22182151 TTGGGCTGTC 22182161 ACAGTAATTCTGTAAATCGAGGGTAAA 1 ACAGTAATTCTGTAAATCGAGGGTAAA * 22182188 ATAGTAATTCTGTAAA-CTGAGGGTAAA 1 ACAGTAATTCTGTAAATC-GAGGGTAAA * 22182215 ACGGTAATTCTGTAAATCGAGGGTAAA 1 ACAGTAATTCTGTAAATCGAGGGTAAA * * ** 22182242 ACGGTAATTTTACAAATCGAGGGTAAA 1 ACAGTAATTCTGTAAATCGAGGGTAAA * * 22182269 AC-GATAATTCTATAAATCAAGGGTAAA 1 ACAG-TAATTCTGTAAATCGAGGGTAAA * 22182296 ACAGTAATTCTGTAAATCAAGGGTAAA 1 ACAGTAATTCTGTAAATCGAGGGTAAA * 22182323 ACAATAATTCTGTAAA-CTGAGGGTAAA 1 ACAGTAATTCTGTAAATC-GAGGGTAAA * 22182350 ACGGTAATTCTGTAAATCGAG 1 ACAGTAATTCTGTAAATCGAG 22182371 AGTACTTTGG Statistics Matches: 163, Mismatches: 14, Indels: 12 0.86 0.07 0.06 Matches are distributed among these distances: 26 3 0.02 27 157 0.96 28 3 0.02 ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27 Consensus pattern (27 bp): ACAGTAATTCTGTAAATCGAGGGTAAA Found at i:22185304 original size:24 final size:24 Alignment explanation
Indices: 22185252--22185347 Score: 140 Period size: 24 Copynumber: 4.0 Consensus size: 24 22185242 GCTTTATCAT * * 22185252 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTG * 22185277 ATAACTGGGGCAAAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTG 22185301 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTG 22185325 ATAACTGGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTT 22185348 TCACTTCCTC Statistics Matches: 66, Mismatches: 4, Indels: 3 0.90 0.05 0.04 Matches are distributed among these distances: 24 54 0.82 25 12 0.18 ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTG Found at i:22185423 original size:20 final size:20 Alignment explanation
Indices: 22185398--22185457 Score: 111 Period size: 20 Copynumber: 3.0 Consensus size: 20 22185388 TATGATTACC 22185398 TCATGTGCATATCATACATA 1 TCATGTGCATATCATACATA * 22185418 TCATGTGCATATCATACATT 1 TCATGTGCATATCATACATA 22185438 TCATGTGCATATCATACATA 1 TCATGTGCATATCATACATA 22185458 CCATATTTAT Statistics Matches: 38, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 38 1.00 ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37 Consensus pattern (20 bp): TCATGTGCATATCATACATA Found at i:22185428 original size:11 final size:11 Alignment explanation
Indices: 22185398--22185452 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 22185388 TATGATTACC 22185398 TCATGTGCATA 1 TCATGTGCATA * 22185409 TCA--TACATA 1 TCATGTGCATA 22185418 TCATGTGCATA 1 TCATGTGCATA * * 22185429 TCA--TACATT 1 TCATGTGCATA 22185438 TCATGTGCATA 1 TCATGTGCATA 22185449 TCAT 1 TCAT 22185453 ACATACCATA Statistics Matches: 34, Mismatches: 6, Indels: 8 0.71 0.12 0.17 Matches are distributed among these distances: 9 15 0.44 11 19 0.56 ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38 Consensus pattern (11 bp): TCATGTGCATA Found at i:22185532 original size:25 final size:25 Alignment explanation
Indices: 22185500--22185547 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 22185490 ATACATAAAC * * * 22185500 CCTAGGGGTATAATGGTCATTTTTA 1 CCTAGGGGCAAAACGGTCATTTTTA 22185525 CCTAGGGGCAAAACGGTCATTTT 1 CCTAGGGGCAAAACGGTCATTTT 22185548 CATATTATAA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33 Consensus pattern (25 bp): CCTAGGGGCAAAACGGTCATTTTTA Found at i:22186805 original size:27 final size:27 Alignment explanation
Indices: 22186786--22187179 Score: 364 Period size: 27 Copynumber: 14.6 Consensus size: 27 22186776 AAGGGTATTT * 22186786 TAGTAATTTTGTAAATCAAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * 22186813 TAGTAATTCTGTAAATCAGGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * * * 22186840 CAGTAATTCTATAAATCGAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * * * 22186867 TGGTAATTTTGTAAATCGAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA ** * 22186894 CGGTAATTCTGTAAATCGAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * ** 22186921 T-GATAATTATGTAAATCGGGGGTAAAA 1 TAG-TAATTCTGTAAATCAAGGGTAAAA ** * * * 22186948 CGGTAATTATGTAAATTAGGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA ** * 22186975 CGGTAATTCTGTAAATCGAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * 22187002 TAGTAATTCTGTAAA-CTGAGGGTAAAA 1 TAGTAATTCTGTAAATC-AAGGGTAAAA ** * 22187029 CGGTAATTCTGTAAATCGAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA ** * ** * 22187056 CGGTAATTTTACAAATCGAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA ** * 22187083 CGGTAATTCTATAAATCAAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * 22187110 CAGTAATTCTGT-AATCAAGGGTAAAA 1 TAGTAATTCTGTAAATCAAGGGTAAAA * * * 22187136 CAATAATTCTGTAAA-CTGAGGGTAAAA 1 TAGTAATTCTGTAAATC-AAGGGTAAAA ** 22187163 CGGTAATTCTGTAAATC 1 TAGTAATTCTGTAAATC 22187180 GAGAGTACTT Statistics Matches: 322, Mismatches: 38, Indels: 13 0.86 0.10 0.03 Matches are distributed among these distances: 26 28 0.09 27 291 0.90 28 3 0.01 ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28 Consensus pattern (27 bp): TAGTAATTCTGTAAATCAAGGGTAAAA Found at i:22186836 original size:54 final size:54 Alignment explanation
Indices: 22186787--22187182 Score: 487 Period size: 54 Copynumber: 7.4 Consensus size: 54 22186777 AGGGTATTTT * * ** 22186787 AGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATC-AGGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAAC * * * 22186841 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC * * * * * 22186895 GGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTAAATCGGGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC * * * * 22186949 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT 1 AGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC 22187003 AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC 1 AGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC * * ** * * 22187057 GGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC * ** 22187111 AGTAATTCTGT-AATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAAC 1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAC * 22187164 GGTAATTCTGTAAATCGAG 1 AGTAATTCTGTAAATCGAG 22187183 AGTACTTTGG Statistics Matches: 297, Mismatches: 38, Indels: 14 0.85 0.11 0.04 Matches are distributed among these distances: 52 1 0.00 53 46 0.15 54 247 0.83 55 3 0.01 ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28 Consensus pattern (54 bp): AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC Found at i:22186873 original size:81 final size:81 Alignment explanation
Indices: 22186788--22187182 Score: 494 Period size: 81 Copynumber: 4.9 Consensus size: 81 22186778 GGGTATTTTA * ** * 22186788 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATC-AGGGGTAAAACAGTAATTCTAT 1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAACAGTAATTCTGT * 22186852 AAATCGAGGGTAAAATG 65 AAATCGAGGGTAAAACG * * * * 22186869 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TGATAATTATGT 1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGT * 22186933 AAATCGGGGGTAAAACG 65 AAATCGAGGGTAAAACG * * * * 22186950 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA 1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA 22187015 AA-CTGAGGGTAAAACG 66 AATC-GAGGGTAAAACG * * ** * * 22187031 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA 1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA * * 22187096 AATCAAGGGTAAAACA 66 AATCGAGGGTAAAACG ** * 22187112 GTAATTCTGT-AATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT 1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGT 22187175 AAATCGAG 65 AAATCGAG 22187183 AGTACTTTGG Statistics Matches: 273, Mismatches: 35, Indels: 13 0.85 0.11 0.04 Matches are distributed among these distances: 79 1 0.00 80 53 0.19 81 216 0.79 82 3 0.01 ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28 Consensus pattern (81 bp): GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA AATCGAGGGTAAAACG Found at i:22188280 original size:39 final size:39 Alignment explanation
Indices: 22188223--22188418 Score: 149 Period size: 39 Copynumber: 5.0 Consensus size: 39 22188213 AAAGCCTATG * * * * * 22188223 GGACTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGC 1 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC 22188262 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC 1 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC * * * * * * * 22188301 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC 1 -GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC * * * * * * 22188341 GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC 1 GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC * * * * * * * 22188380 GAGTCTTTAAGCCCGGATATAATTCCAGCACAAAGCCTG 1 G-GACGTTAAGACCAGATATAGTACCAGCACGAAGCCTG 22188419 TGGGTCTTTA Statistics Matches: 135, Mismatches: 20, Indels: 3 0.85 0.13 0.02 Matches are distributed among these distances: 39 71 0.53 40 64 0.47 ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20 Consensus pattern (39 bp): GGACGTTAAGACCAGATATAGTACCAGCACGAAGCCTGC Found at i:22188318 original size:79 final size:79 Alignment explanation
Indices: 22188226--22188478 Score: 319 Period size: 79 Copynumber: 3.2 Consensus size: 79 22188216 GCCTATGGGA * * * * * * * * * 22188226 CTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGCGGACGTTAAGACCAGATATAGTACCAGCA 1 CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGACCGGATACAATTCCAGCA 22188291 CGAAGCCTGCGGGT 66 CGAAGCCTGCGGGT * * 22188305 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA 1 CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGACCGGATACAATTCCAGCA * 22188370 CGAAGCCTGCGAGT 66 CGAAGCCTGCGGGT * * * * * 22188384 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGC 1 CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTG-CGGACCTTAAGACCGGATACAATTCCAGC * 22188449 A-TATAGCCTGCGGGT 65 ACGA-AGCCTGCGGGT 22188464 CTTTAAGCCCGGATA 1 CTTTAAGCCCGGATA 22188479 CACATCAAAT Statistics Matches: 152, Mismatches: 20, Indels: 3 0.87 0.11 0.02 Matches are distributed among these distances: 79 101 0.66 80 51 0.34 ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22 Consensus pattern (79 bp): CTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGACCGGATACAATTCCAGCA CGAAGCCTGCGGGT Found at i:22188410 original size:119 final size:119 Alignment explanation
Indices: 22188222--22188480 Score: 324 Period size: 119 Copynumber: 2.2 Consensus size: 119 22188212 CAAAGCCTAT * * * * * * * 22188222 GGGACTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGCGGACGTTAAGACCAGATATAGTACC 1 GGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACGTTAAGACCAGATATAATACC * 22188287 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC 66 AGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-GATAGCCTGC * * * * * * 22188341 -GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATATAATTC 1 GGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG-GACGTTAAGACCAGATATAATAC * * 22188405 CAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTGC 65 CAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAGATAGCCTGC * * 22188460 GGGTCTTTAAGCCCGGATACA 1 GGGACCTTAAGCCCGGATACA 22188481 CATCAAATAT Statistics Matches: 118, Mismatches: 19, Indels: 5 0.83 0.13 0.04 Matches are distributed among these distances: 118 34 0.29 119 67 0.57 120 17 0.14 ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21 Consensus pattern (119 bp): GGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACGTTAAGACCAGATATAATACC AGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAGATAGCCTGC Found at i:22188479 original size:40 final size:40 Alignment explanation
Indices: 22188226--22188480 Score: 300 Period size: 40 Copynumber: 6.4 Consensus size: 40 22188216 GCCTATGGGA * * * * * * 22188226 CTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGC-GGA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT * * * * * * 22188265 CGTTAAGACCAGATATAGTACCAGCACGAAGCCTGCGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT * 22188305 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT * * * 22188344 CCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT * * * 22188384 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT * 22188424 CTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGCGGGT 22188464 CTTTAAGCCCGGATACA 1 CTTTAAGCCCGGATACA 22188481 CATCAAATAT Statistics Matches: 187, Mismatches: 26, Indels: 5 0.86 0.12 0.02 Matches are distributed among these distances: 39 68 0.36 40 119 0.64 ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22 Consensus pattern (40 bp): CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGT Found at i:22195066 original size:39 final size:39 Alignment explanation
Indices: 22195023--22195250 Score: 131 Period size: 39 Copynumber: 5.8 Consensus size: 39 22195013 CTATGGGACT * * * 22195023 TTAAGCCCGGATATAGTACTAGTACGAAACCTGCGAACC 1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC ** * * * * 22195062 TTAAGTCTAGATATAGTACCAGCACGAAGCCTGTGGATC 1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC * * * * ** * 22195101 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCT 1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGC-GAACC * * * * * 22195141 TTAAG-CCGGATACAAT-TCAGCACGAAGCCTGCGGACC 1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC * * * * * 22195178 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-AATTCT 1 TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAA--CC * * * 22195218 TTAAGCCCGGATATAATTCCAGCAC-AAAGCCTG 1 TTAAGTCCGGATATAGTACCAGCACGAAA-CCTG 22195251 TGGGTCTTTA Statistics Matches: 156, Mismatches: 27, Indels: 11 0.80 0.14 0.06 Matches are distributed among these distances: 37 8 0.05 38 27 0.17 39 86 0.55 40 35 0.22 ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22 Consensus pattern (39 bp): TTAAGTCCGGATATAGTACCAGCACGAAACCTGCGAACC Found at i:22195183 original size:77 final size:79 Alignment explanation
Indices: 22195080--22195312 Score: 319 Period size: 77 Copynumber: 3.0 Consensus size: 79 22195070 AGATATAGTA * * 22195080 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA 1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA 22195145 G-CCGGATACAATT 66 GCCCGGATACAATT *** 22195158 -CAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCAATTCTTTAA 1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA * 22195222 GCCCGGATATAATT 66 GCCCGGATACAATT * * * * * * 22195236 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGTCTTT 1 CCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGGTCTTT 22195300 AAGCCCGGATACA 64 AAGCCCGGATACA 22195313 CATCAAATAT Statistics Matches: 135, Mismatches: 16, Indels: 6 0.86 0.10 0.04 Matches are distributed among these distances: 77 60 0.44 78 11 0.08 79 14 0.10 80 50 0.37 ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22 Consensus pattern (79 bp): CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA GCCCGGATACAATT Found at i:22195236 original size:40 final size:40 Alignment explanation
Indices: 22195080--22195312 Score: 280 Period size: 40 Copynumber: 5.9 Consensus size: 40 22195070 AGATATAGTA * * 22195080 CCAGCACGAAGCCTGTG-GATC-TTAAGTCCGGATACAATT 1 CCAGCACGAAGCCTGCGAG-TCTTTAAGCCCGGATACAATT * 22195119 CCAGCACGAAGCCTGCGGGTCTTTAAG-CCGGATACAATT 1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT * * * 22195158 -CAGCACGAAGCCTGCG-GACCTTAAGTCCGGATACAATT 1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT * * * 22195196 CCAGCACGAAGCCTGCAATTCTTTAAGCCCGGATATAATT 1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT * * * 22195236 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT 1 CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT * * 22195276 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACA 1 CCAGCACGA-AGCCTGCGAGTCTTTAAGCCCGGATACA 22195313 CATCAAATAT Statistics Matches: 171, Mismatches: 17, Indels: 11 0.86 0.09 0.06 Matches are distributed among these distances: 37 7 0.04 38 28 0.16 39 46 0.27 40 90 0.53 ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22 Consensus pattern (40 bp): CCAGCACGAAGCCTGCGAGTCTTTAAGCCCGGATACAATT Found at i:22202011 original size:39 final size:39 Alignment explanation
Indices: 22201954--22202188 Score: 175 Period size: 39 Copynumber: 6.0 Consensus size: 39 22201944 AAAGCCTATG * * * * * 22201954 GGACTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGC 1 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC * 22201993 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGT 1 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC * * * * 22202032 GGATCTTAAGTCC-GAATACAATTCCAGCACGAAGCCTGC 1 GGACCTTAAGTCCAG-ATATAGTACCAGCACGAAGCCTGC * * * * * * * * 22202071 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCCGC 1 -GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC * * * * 22202111 GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC 1 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC * * * * * * * 22202150 GAGTCTTTAAGCCCGGATATAATTCCAGCACAAAGCCTG 1 G-GACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTG 22202189 TGGGTCTTTA Statistics Matches: 167, Mismatches: 25, Indels: 7 0.84 0.13 0.04 Matches are distributed among these distances: 38 1 0.01 39 101 0.60 40 64 0.38 41 1 0.01 ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20 Consensus pattern (39 bp): GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGC Found at i:22202101 original size:79 final size:79 Alignment explanation
Indices: 22202016--22202250 Score: 355 Period size: 79 Copynumber: 3.0 Consensus size: 79 22202006 AGATATAGTA * 22202016 CCAGCACGAAGCCTGTGGATCTTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA 1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA 22202081 GCCCGGATACAATT 66 GCCCGGATACAATT * * * * 22202095 CCAGCACGAAGCCCGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGTCTTTAA 1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA * 22202160 GCCCGGATATAATT 66 GCCCGGATACAATT * * * * 22202174 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGTCTTT 1 CCAGCACGAAGCCTGTGGATC-TTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGGTCTTT 22202238 AAGCCCGGATACA 64 AAGCCCGGATACA 22202251 CATCAAATAT Statistics Matches: 139, Mismatches: 15, Indels: 3 0.89 0.10 0.02 Matches are distributed among these distances: 79 90 0.65 80 49 0.35 ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21 Consensus pattern (79 bp): CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA GCCCGGATACAATT Found at i:22202188 original size:40 final size:39 Alignment explanation
Indices: 22201957--22202250 Score: 313 Period size: 40 Copynumber: 7.4 Consensus size: 39 22201947 GCCTATGGGA * * * * * * 22201957 CTTTAAGCCCGGATATAGTACTAGTACGAAGCCTGCGGA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT * * * * * * * 22201996 CCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGTGGAT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGG-T * * 22202036 C-TTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGT * * 22202075 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCCGCGGA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT * * 22202114 CCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG-GT * * * 22202154 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGT * 22202194 CTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC-GGT 22202234 CTTTAAGCCCGGATACA 1 CTTTAAGCCCGGATACA 22202251 CATCAAATAT Statistics Matches: 219, Mismatches: 29, Indels: 13 0.84 0.11 0.05 Matches are distributed among these distances: 39 99 0.45 40 119 0.54 41 1 0.00 ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22 Consensus pattern (39 bp): CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT Found at i:22208953 original size:39 final size:39 Alignment explanation
Indices: 22208905--22209079 Score: 125 Period size: 39 Copynumber: 4.5 Consensus size: 39 22208895 AAAGCCTATG * * * * 22208905 GGACTTTAAGCCCGGATATAGTACTAGTACAAAACCTGC 1 GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC * * * * 22208944 GGACCTTAAGTCCAGATATAGTACCAGCACGAAGCCTGT 1 GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC * * * * * * * 22208983 GGATCTTAAGTCCGGATACAATTCTAGCACGAAGCCTGC 1 GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC * * * * * * * * * 22209022 GGGTCTTTAAGACCGGATACAATCCCAGCACGAAGCCTGT 1 -GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC 22209062 GGACCTTAAGTCCGGATA 1 GGACCTTAAGTCCGGATA 22209080 CAATTCCAGC Statistics Matches: 110, Mismatches: 25, Indels: 2 0.80 0.18 0.01 Matches are distributed among these distances: 39 78 0.71 40 32 0.29 ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22 Consensus pattern (39 bp): GGACCTTAAGTCCGGATATAGTACCAGCACAAAACCTGC Found at i:22209041 original size:40 final size:40 Alignment explanation
Indices: 22208967--22209201 Score: 287 Period size: 40 Copynumber: 5.9 Consensus size: 40 22208957 AGATATAGTA * * * 22208967 CCAGCACGAAGCCTGTGGATC-TTAAGTCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * * * 22209006 CTAGCACGAAGCCTGCGGGTCTTTAAGACCGGATACAATC 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * * * * 22209046 CCAGCACGAAGCCTG-TGGACCTTAAGTCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT *** * 22209085 CCAGCACGAAGCCTGCAATTCTTTAAGCCCGGATATAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * * 22209125 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * 22209165 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACA 1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACA 22209202 CATCAAATAT Statistics Matches: 167, Mismatches: 26, Indels: 5 0.84 0.13 0.03 Matches are distributed among these distances: 39 53 0.32 40 114 0.68 ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22 Consensus pattern (40 bp): CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT Found at i:22209053 original size:79 final size:79 Alignment explanation
Indices: 22208967--22209201 Score: 337 Period size: 79 Copynumber: 3.0 Consensus size: 79 22208957 AGATATAGTA * 22208967 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCTAGCACGAAGCCTGCGGGTCTTTAA 1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA * 22209032 GACCGGATACAATC 66 GCCCGGATACAATC * *** 22209046 CCAGCACGAAGCCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCAATTCTTTAA 1 CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA * * 22209111 GCCCGGATATAATT 66 GCCCGGATACAATC * * * * 22209125 CCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGTCTTT 1 CCAGCACGAAGCCTGTGGATC-TTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGGTCTTT 22209189 AAGCCCGGATACA 64 AAGCCCGGATACA 22209202 CATCAAATAT Statistics Matches: 137, Mismatches: 17, Indels: 3 0.87 0.11 0.02 Matches are distributed among these distances: 79 90 0.66 80 47 0.34 ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22 Consensus pattern (79 bp): CCAGCACGAAGCCTGTGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA GCCCGGATACAATC Found at i:22209082 original size:39 final size:39 Alignment explanation
Indices: 22208939--22209170 Score: 232 Period size: 40 Copynumber: 5.9 Consensus size: 39 22208929 TAGTACAAAA * * * * * 22208939 CCTGCGGACCTTAAGTCCAGATATAGTACCAGCACGAAG 1 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG * * 22208978 CCTGTGGATCTTAAGTCCGGATACAATTCTAGCACGAAG 1 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG * * * * * 22209017 CCTGCGGGTCTTTAAGACCGGATACAATCCCAGCACGAAG 1 CCTG-TGGACCTTAAGTCCGGATACAATTCCAGCACGAAG 22209057 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG 1 CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG ** * * * * 22209096 CCTG-CAATTCTTTAAGCCCGGATATAATTCCAGCACAAAG 1 CCTGTGGA--CCTTAAGTCCGGATACAATTCCAGCACGAAG * * * 22209136 CCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA 1 CCTGT-GGACCTTAAGTCCGGATACAATTCCAGCA 22209171 TATAGCCTGC Statistics Matches: 159, Mismatches: 29, Indels: 9 0.81 0.15 0.05 Matches are distributed among these distances: 38 1 0.01 39 70 0.44 40 88 0.55 ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22 Consensus pattern (39 bp): CCTGTGGACCTTAAGTCCGGATACAATTCCAGCACGAAG Found at i:22215992 original size:78 final size:79 Alignment explanation
Indices: 22215861--22216114 Score: 298 Period size: 78 Copynumber: 3.2 Consensus size: 79 22215851 GCATATGGGA * * * * * * 22215861 CTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGCA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCA 22215926 CGAAGCCTGC-AGAT 66 CGAAGCCTGCGAG-T ** * 22215940 C-TTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCA 22216004 CGAAGCCTGCGAGT 66 CGAAGCCTGCGAGT * * * * * * * 22216018 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGC 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATACCAGC * * 22216083 A-TATAGCCTGCGGGT 65 ACGA-AGCCTGCGAGT 22216098 CTTTAAGCCCGGATACA 1 CTTTAAGCCCGGATACA 22216115 CATCAAATAT Statistics Matches: 151, Mismatches: 20, Indels: 7 0.85 0.11 0.04 Matches are distributed among these distances: 78 66 0.44 79 33 0.22 80 52 0.34 ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22 Consensus pattern (79 bp): CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCA CGAAGCCTGCGAGT Found at i:22216038 original size:40 final size:39 Alignment explanation
Indices: 22215861--22216114 Score: 269 Period size: 39 Copynumber: 6.4 Consensus size: 39 22215851 GCATATGGGA * * * * * 22215861 CTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT * * * * * * 22215900 CCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGCAGAT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGT ** * 22215940 C-TTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGA 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT * * 22215978 CCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGAGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG-GT * * * 22216018 CTTTAAGCCCGGATATAATTCCAGCACAAAGCCTGTGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGT * 22216058 CTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGCGGGT 1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC-GGT 22216098 CTTTAAGCCCGGATACA 1 CTTTAAGCCCGGATACA 22216115 CATCAAATAT Statistics Matches: 188, Mismatches: 21, Indels: 11 0.85 0.10 0.05 Matches are distributed among these distances: 38 2 0.01 39 98 0.52 40 87 0.46 41 1 0.01 ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22 Consensus pattern (39 bp): CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGT Found at i:22222817 original size:39 final size:39 Alignment explanation
Indices: 22222752--22222988 Score: 186 Period size: 39 Copynumber: 6.1 Consensus size: 39 22222742 AAATCCTACA * * * * 22222752 GGACTTTAAGCCCGGATATAGTACCAGTACGAAGCTTGT 1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT * * 22222791 GGACCTTATGTCCGGATATAGTACCAGCACGAAGCCTGC 1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT * * * * 22222830 GGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGT 1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT *** * * * * * * 22222869 GGGTTTTAAGCCCGGATACAATTCCAACACGAAGCCTGC 1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT * * * * * 22222908 AGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCG 1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTG-T * * * * * * * 22222948 GGTCTTTAAGCCCGGATATAATTCTAGCACAAAGCCTGT 1 GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT 22222987 GG 1 GG 22222989 GTCTTTAAGC Statistics Matches: 165, Mismatches: 32, Indels: 2 0.83 0.16 0.01 Matches are distributed among these distances: 39 134 0.81 40 31 0.19 ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22 Consensus pattern (39 bp): GGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGT Found at i:22222886 original size:78 final size:79 Alignment explanation
Indices: 22222802--22223045 Score: 330 Period size: 78 Copynumber: 3.1 Consensus size: 79 22222792 GACCTTATGT * * 22222802 CCGGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT 1 CCGGATATAATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT * 22222867 GTGGGT-TTTAAGC 66 GCGGGTCTTTAAGC * * * * 22222880 CCGGATACAATTCCAACACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCT 1 CCGGATATAATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT 22222945 GCGGGTCTTTAAGC 66 GCGGGTCTTTAAGC * * * * * * 22222959 CCGGATATAATTCTAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGC 1 CCGGATATAATTCCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACGA-AGC 22223023 CTGCGGGTCTTTAAGC 64 CTGCGGGTCTTTAAGC * 22223039 CCTGATA 1 CCGGATA 22223046 CACATCAAAT Statistics Matches: 145, Mismatches: 18, Indels: 4 0.87 0.11 0.02 Matches are distributed among these distances: 78 64 0.44 79 33 0.23 80 48 0.33 ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23 Consensus pattern (79 bp): CCGGATATAATTCCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCT GCGGGTCTTTAAGC Found at i:22222971 original size:40 final size:40 Alignment explanation
Indices: 22222814--22223047 Score: 305 Period size: 40 Copynumber: 5.9 Consensus size: 40 22222804 GGATATAGTA * * 22222814 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * 22222853 CCAGCACGAAGCCTGTGGGT-TTTAAGCCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * * * * * 22222892 CCAACACGAAGCCTGC-AGACCTTAAGTCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * 22222931 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * * * 22222971 CTAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATT 1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT * * 22223011 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCTGATACA 1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACA 22223048 CATCAAATAT Statistics Matches: 168, Mismatches: 23, Indels: 7 0.85 0.12 0.04 Matches are distributed among these distances: 38 1 0.01 39 82 0.49 40 85 0.51 ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22 Consensus pattern (40 bp): CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT Found at i:22229151 original size:31 final size:31 Alignment explanation
Indices: 22229108--22229171 Score: 92 Period size: 31 Copynumber: 2.1 Consensus size: 31 22229098 CCTTTTCATA * 22229108 TTTCATAATTCATAACACTGGGCTGAAGCCT 1 TTTCATAATTCATAACACTGGGCCGAAGCCT * ** 22229139 TTTCATATTTCATATTACTGGGCCGAAGCCT 1 TTTCATAATTCATAACACTGGGCCGAAGCCT 22229170 TT 1 TT 22229172 ACTGTAAACG Statistics Matches: 29, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 31 29 1.00 ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38 Consensus pattern (31 bp): TTTCATAATTCATAACACTGGGCCGAAGCCT Found at i:22229412 original size:25 final size:26 Alignment explanation
Indices: 22229384--22229459 Score: 115 Period size: 23 Copynumber: 3.1 Consensus size: 26 22229374 GCCTAGCCTC 22229384 TTTTAATAACTGGGGCA-AAGCCCTT 1 TTTTAATAACTGGGGCATAAGCCCTT * 22229409 TTTTAATAACTAGGGCATAAGCCC-- 1 TTTTAATAACTGGGGCATAAGCCCTT 22229433 -TTTAATAACTGGGGCATAAGCCCTT 1 TTTTAATAACTGGGGCATAAGCCCTT 22229458 TT 1 TT 22229460 GCACTTCCTC Statistics Matches: 45, Mismatches: 2, Indels: 7 0.83 0.04 0.13 Matches are distributed among these distances: 23 22 0.49 25 16 0.36 26 7 0.16 ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33 Consensus pattern (26 bp): TTTTAATAACTGGGGCATAAGCCCTT Found at i:22229536 original size:20 final size:20 Alignment explanation
Indices: 22229513--22229573 Score: 104 Period size: 20 Copynumber: 3.0 Consensus size: 20 22229503 GAACATCTTG 22229513 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA * * 22229533 TGTGCATGTCATACATGTCA 1 TGTGCATATCATACATATCA 22229553 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA 22229573 T 1 T 22229574 ATTTATCAAA Statistics Matches: 37, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 20 37 1.00 ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36 Consensus pattern (20 bp): TGTGCATATCATACATATCA Found at i:22236576 original size:30 final size:31 Alignment explanation
Indices: 22236540--22236602 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 22236530 CCTTTTCATA 22236540 TTTCATA-TTCATAACACTGGGCCGAAGCCT 1 TTTCATATTTCATAACACTGGGCCGAAGCCT ** 22236570 TTTCATATTTCATATTACTGGGCCGAAGCCT 1 TTTCATATTTCATAACACTGGGCCGAAGCCT 22236601 TT 1 TT 22236603 ACTGTAAACG Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 30 7 0.23 31 23 0.77 ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37 Consensus pattern (31 bp): TTTCATATTTCATAACACTGGGCCGAAGCCT Found at i:22236843 original size:25 final size:26 Alignment explanation
Indices: 22236815--22236890 Score: 124 Period size: 23 Copynumber: 3.1 Consensus size: 26 22236805 GCCTAGCCTC 22236815 TTTTAATAACTGGGGCA-AAGCCCTT 1 TTTTAATAACTGGGGCATAAGCCCTT 22236840 TTTTAATAACTGGGGCATAAGCCC-- 1 TTTTAATAACTGGGGCATAAGCCCTT 22236864 -TTTAATAACTGGGGCATAAGCCCTT 1 TTTTAATAACTGGGGCATAAGCCCTT 22236889 TT 1 TT 22236891 GCACTTCCTC Statistics Matches: 47, Mismatches: 0, Indels: 7 0.87 0.00 0.13 Matches are distributed among these distances: 23 23 0.49 25 17 0.36 26 7 0.15 ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33 Consensus pattern (26 bp): TTTTAATAACTGGGGCATAAGCCCTT Found at i:22236962 original size:9 final size:9 Alignment explanation
Indices: 22236948--22237004 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 22236938 ATCTCGTGTG 22236948 CATATCATA 1 CATATCATA * 22236957 CATATCATGTG 1 CATATCA--TA 22236968 CATATCATA 1 CATATCATA * * 22236977 CATGTCATGTG 1 CATATCA--TA 22236988 CATATCATA 1 CATATCATA 22236997 CATATCAT 1 CATATCAT 22237005 CTTTATCAAA Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35 Consensus pattern (9 bp): CATATCATA Found at i:22236967 original size:20 final size:20 Alignment explanation
Indices: 22236944--22237004 Score: 113 Period size: 20 Copynumber: 3.0 Consensus size: 20 22236934 GAACATCTCG 22236944 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA * 22236964 TGTGCATATCATACATGTCA 1 TGTGCATATCATACATATCA 22236984 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA 22237004 T 1 T 22237005 CTTTATCAAA Statistics Matches: 39, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 39 1.00 ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36 Consensus pattern (20 bp): TGTGCATATCATACATATCA Found at i:22237071 original size:25 final size:25 Alignment explanation
Indices: 22237043--22237090 Score: 78 Period size: 25 Copynumber: 1.9 Consensus size: 25 22237033 ATATATAAAC * * 22237043 CCTAGGGGTATAATGGTCATTTTTA 1 CCTAGGGGCAAAATGGTCATTTTTA 22237068 CCTAGGGGCAAAATGGTCATTTT 1 CCTAGGGGCAAAATGGTCATTTT 22237091 CTTATTATAA Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 25 21 1.00 ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35 Consensus pattern (25 bp): CCTAGGGGCAAAATGGTCATTTTTA Found at i:22248553 original size:28 final size:28 Alignment explanation
Indices: 22248521--22248619 Score: 112 Period size: 28 Copynumber: 3.5 Consensus size: 28 22248511 GCAATAAGCC * 22248521 CGCACACTTAGTGCTTAATAGTCGAACT 1 CGCACACTTAGTGCTTAATAATCGAACT * 22248549 CGCACACTTAGTGC-TATATAATCAAACT 1 CGCACACTTAGTGCTTA-ATAATCGAACT * * * 22248577 TGCACACTTAGTGCTGT-ATAATTTGAACC 1 CGCACACTTAGTGCT-TAATAA-TCGAACT 22248606 CGCACACTTAGTGC 1 CGCACACTTAGTGC 22248620 CAATTTGTGA Statistics Matches: 60, Mismatches: 7, Indels: 7 0.81 0.09 0.09 Matches are distributed among these distances: 27 2 0.03 28 40 0.67 29 17 0.28 30 1 0.02 ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29 Consensus pattern (28 bp): CGCACACTTAGTGCTTAATAATCGAACT Found at i:22259471 original size:29 final size:28 Alignment explanation
Indices: 22259438--22259510 Score: 128 Period size: 28 Copynumber: 2.6 Consensus size: 28 22259428 CCTTCGAGCT 22259438 CGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATAT-TTTCCAGCA * 22259467 TGCACACTTAGTGCCATATTTTCCAGCA 1 CGCACACTTAGTGCCATATTTTCCAGCA 22259495 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 22259511 ATCTCGTCAC Statistics Matches: 42, Mismatches: 2, Indels: 1 0.93 0.04 0.02 Matches are distributed among these distances: 28 24 0.57 29 18 0.43 ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27 Consensus pattern (28 bp): CGCACACTTAGTGCCATATTTTCCAGCA Found at i:22259499 original size:28 final size:29 Alignment explanation
Indices: 22259380--22259510 Score: 131 Period size: 29 Copynumber: 4.6 Consensus size: 29 22259370 TACTCGATTT ** * * 22259380 CGCACACTTAGTGCCATGCGATTT-AAGCC 1 CGCACACTTAGTGCCAT-ATATTTCCAGCA * **** * * 22259409 CGCACACATAGTGCCATGCCCTTCGAGCT 1 CGCACACTTAGTGCCATATATTTCCAGCA 22259438 CGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA * 22259467 TGCACACTTAGTGCCATAT-TTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 22259495 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 22259511 ATCTCGTCAC Statistics Matches: 85, Mismatches: 16, Indels: 3 0.82 0.15 0.03 Matches are distributed among these distances: 28 26 0.31 29 59 0.69 ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25 Consensus pattern (29 bp): CGCACACTTAGTGCCATATATTTCCAGCA Found at i:22268999 original size:93 final size:93 Alignment explanation
Indices: 22268887--22269057 Score: 299 Period size: 93 Copynumber: 1.8 Consensus size: 93 22268877 GCCCCTAAGT * 22268887 GAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGCATCCATAAGTGAACTAGGACTCAACTCA 1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCA 22268951 ACGAGTTCGGATGCCTAGTTACATTTCAC 65 ACGAGTTCGGATGCCTAGTTACATTTCAC * * 22268980 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTGGGACTCAATTCAA 1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA 22269045 CGAGTTCGGATGC 66 CGAGTTCGGATGC 22269058 TCAACCATCC Statistics Matches: 74, Mismatches: 3, Indels: 2 0.94 0.04 0.03 Matches are distributed among these distances: 92 2 0.03 93 72 0.97 ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATTTCAC Found at i:22269051 original size:46 final size:46 Alignment explanation
Indices: 22268882--22269054 Score: 185 Period size: 46 Copynumber: 3.7 Consensus size: 46 22268872 AACCCGCCCC * 22268882 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA * * * 22268928 TAAGTGAACTAGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA * * 22268976 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA * * 22269021 TAAGTGAACTGGGACTCAATTCAACGAGTTCGGA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 22269055 TGCTCAACCA Statistics Matches: 104, Mismatches: 13, Indels: 20 0.76 0.09 0.15 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 1 0.01 45 4 0.04 46 56 0.54 47 28 0.27 48 2 0.02 49 1 0.01 50 4 0.04 51 2 0.02 ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23 Consensus pattern (46 bp): TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA Found at i:22269509 original size:30 final size:30 Alignment explanation
Indices: 22269475--22269534 Score: 93 Period size: 30 Copynumber: 2.0 Consensus size: 30 22269465 ATTTAATACG 22269475 AACTTTGGAAAAATTACACTTTTGCCCCTA 1 AACTTTGGAAAAATTACACTTTTGCCCCTA * * * 22269505 AACTTTTGCATAATTACACTTTTGCCCCTA 1 AACTTTGGAAAAATTACACTTTTGCCCCTA 22269535 GGCTCGGGAA Statistics Matches: 27, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 30 27 1.00 ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37 Consensus pattern (30 bp): AACTTTGGAAAAATTACACTTTTGCCCCTA Found at i:22279592 original size:27 final size:27 Alignment explanation
Indices: 22279562--22279636 Score: 98 Period size: 27 Copynumber: 2.8 Consensus size: 27 22279552 CAATTTGATG 22279562 AAATGACTAG-TTTACCCTTATGTGGCA 1 AAATGACT-GTTTTACCCTTATGTGGCA * * 22279589 AAATGACTGTTTTGCTCTTATGTGGCA 1 AAATGACTGTTTTACCCTTATGTGGCA * * 22279616 AAATGATTGTTTTGCCCTTAT 1 AAATGACTGTTTTACCCTTAT 22279637 ATGGTTAGCT Statistics Matches: 43, Mismatches: 4, Indels: 2 0.88 0.08 0.04 Matches are distributed among these distances: 26 1 0.02 27 42 0.98 ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40 Consensus pattern (27 bp): AAATGACTGTTTTACCCTTATGTGGCA Found at i:22281181 original size:3 final size:3 Alignment explanation
Indices: 22281173--22281207 Score: 52 Period size: 3 Copynumber: 11.3 Consensus size: 3 22281163 ATAATATGAC * 22281173 ATA ATA ATA ATA ATA ATA ATA ATT ATA AGTA ATA A 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA A 22281208 GTAAATATCT Statistics Matches: 29, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 3 26 0.90 4 3 0.10 ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34 Consensus pattern (3 bp): ATA Found at i:22284238 original size:24 final size:24 Alignment explanation
Indices: 22284208--22284253 Score: 74 Period size: 24 Copynumber: 1.9 Consensus size: 24 22284198 TATAATGTGA * * 22284208 AAATGACCATTTTTCCCCTAGGTG 1 AAATGACCATTATACCCCTAGGTG 22284232 AAATGACCATTATACCCCTAGG 1 AAATGACCATTATACCCCTAGG 22284254 GATGTGCTAT Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 20 1.00 ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28 Consensus pattern (24 bp): AAATGACCATTATACCCCTAGGTG Found at i:22284308 original size:10 final size:10 Alignment explanation
Indices: 22284293--22284331 Score: 69 Period size: 10 Copynumber: 3.8 Consensus size: 10 22284283 CTGATTTGTA 22284293 CATGATATGC 1 CATGATATGC 22284303 CATGATATGC 1 CATGATATGC 22284313 ACATGATATGC 1 -CATGATATGC 22284324 CATGATAT 1 CATGATAT 22284332 ATTCATATAT Statistics Matches: 28, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 10 18 0.64 11 10 0.36 ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31 Consensus pattern (10 bp): CATGATATGC Found at i:22284308 original size:21 final size:21 Alignment explanation
Indices: 22284292--22284331 Score: 80 Period size: 21 Copynumber: 1.9 Consensus size: 21 22284282 ACTGATTTGT 22284292 ACATGATATGCCATGATATGC 1 ACATGATATGCCATGATATGC 22284313 ACATGATATGCCATGATAT 1 ACATGATATGCCATGATAT 22284332 ATTCATATAT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 19 1.00 ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30 Consensus pattern (21 bp): ACATGATATGCCATGATATGC Found at i:22290170 original size:23 final size:23 Alignment explanation
Indices: 22290126--22290171 Score: 56 Period size: 23 Copynumber: 2.0 Consensus size: 23 22290116 TTTCCATTAT * * 22290126 ATCATCAATGATAGATCCAATAA 1 ATCATCAATGAGAGATCAAATAA ** 22290149 ATCATCAATGAGATTTCAAATAA 1 ATCATCAATGAGAGATCAAATAA 22290172 CTCACGAACC Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 23 19 1.00 ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28 Consensus pattern (23 bp): ATCATCAATGAGAGATCAAATAA Found at i:22297006 original size:30 final size:30 Alignment explanation
Indices: 22296970--22297031 Score: 106 Period size: 30 Copynumber: 2.1 Consensus size: 30 22296960 CTTAACAAGA * 22296970 AAATGTCTCTAAAATAATAACAAAATTAAC 1 AAATGTCTCTAAAATAATAAAAAAATTAAC * 22297000 AAATGTCTTTAAAATAATAAAAAAATTAAC 1 AAATGTCTCTAAAATAATAAAAAAATTAAC 22297030 AA 1 AA 22297032 TAAAATAAGT Statistics Matches: 30, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 30 30 1.00 ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27 Consensus pattern (30 bp): AAATGTCTCTAAAATAATAAAAAAATTAAC Found at i:22297116 original size:22 final size:22 Alignment explanation
Indices: 22297074--22297138 Score: 62 Period size: 22 Copynumber: 3.0 Consensus size: 22 22297064 ACAACAAAGT * 22297074 AGTAGCAACATAATAGTAAAAC 1 AGTAGCAAAATAATAGTAAAAC * 22297096 AGTAGCAAAATAGGTAG-AAAAC 1 AGTAGCAAAATA-ATAGTAAAAC * * 22297118 AATAAG-AAAATAATATTAAAA 1 AGT-AGCAAAATAATAGTAAAA 22297139 AATAGATTTG Statistics Matches: 35, Mismatches: 5, Indels: 6 0.76 0.11 0.13 Matches are distributed among these distances: 21 2 0.06 22 28 0.80 23 5 0.14 ACGTcount: A:0.60, C:0.08, G:0.14, T:0.18 Consensus pattern (22 bp): AGTAGCAAAATAATAGTAAAAC Found at i:22306134 original size:46 final size:45 Alignment explanation
Indices: 22306082--22306242 Score: 150 Period size: 46 Copynumber: 3.5 Consensus size: 45 22306072 TATTTGGGCA 22306082 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGTGAACG 1 TCCGAACTCGTTGAGTTGAGTC-GAGTTCACTCATGGATGTGAACG * * 22306128 TCCGAACTCGTTGAGTTTAGTCCGAGTTCA-TGA--GATGT-AACTAGG 1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTCATGGATGTGAAC---G * * * 22306173 CATCCGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACG 1 --TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTCATGGATGTGAACG * * * 22306221 CCCTAGCTCGTTGAGTTGAGTC 1 TCCGAACTCGTTGAGTTGAGTC 22306243 CGGGTTTGCT Statistics Matches: 96, Mismatches: 9, Indels: 21 0.76 0.07 0.17 Matches are distributed among these distances: 42 3 0.03 43 5 0.05 45 4 0.04 46 46 0.48 47 28 0.29 48 3 0.03 50 4 0.04 51 3 0.03 ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30 Consensus pattern (45 bp): TCCGAACTCGTTGAGTTGAGTCGAGTTCACTCATGGATGTGAACG Found at i:22307659 original size:47 final size:47 Alignment explanation
Indices: 22307603--22308051 Score: 682 Period size: 47 Copynumber: 9.6 Consensus size: 47 22307593 CACATCCACG * * * * 22307603 TTCATCACATTGGCCATCCTGCCTTATCACATGTATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * * 22307650 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * 22307697 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCAGGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA 22307744 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * * 22307791 TTCATCACATTGGCCATTTGGCCTTATCACATATATGCAGGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * * 22307838 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * * 22307885 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * * * 22307932 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA ** * * * * 22307979 TTCATCACATTTCCCATTCGGCCTTAGCACACAAATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA * * 22308026 TTCATCACATTTGTCATTCGGCCTTA 1 TTCATCACATTGGCCATTCGGCCTTA 22308052 GCTCATGTAT Statistics Matches: 380, Mismatches: 22, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 47 380 1.00 ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35 Consensus pattern (47 bp): TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA Found at i:22307679 original size:22 final size:22 Alignment explanation
Indices: 22307651--22307728 Score: 70 Period size: 22 Copynumber: 3.4 Consensus size: 22 22307641 ATGTTCACAT 22307651 TTATCACATTGGCCATTCGGCC 1 TTATCACATTGGCCATTCGGCC * * * 22307673 TTATCACATATATG-CATGTTC-ACA 1 TTATCACAT-T-GGCCA--TTCGGCC 22307697 TTCATCACATTGGCCATTCGGCC 1 TT-ATCACATTGGCCATTCGGCC 22307720 TTATCACAT 1 TTATCACAT 22307729 ATATGCAGGT Statistics Matches: 43, Mismatches: 6, Indels: 14 0.68 0.10 0.22 Matches are distributed among these distances: 22 19 0.44 23 7 0.16 24 7 0.16 25 10 0.23 ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35 Consensus pattern (22 bp): TTATCACATTGGCCATTCGGCC Found at i:22307866 original size:22 final size:22 Alignment explanation
Indices: 22307841--22307962 Score: 58 Period size: 22 Copynumber: 5.3 Consensus size: 22 22307831 GTTCATATTC 22307841 ATCACATTGGCCATTCAGCCTT 1 ATCACATTGGCCATTCAGCCTT ** 22307863 ATCACACATAT-G-CATGTTCA-TATT 1 AT--CACAT-TGGCCA--TTCAGCCTT 22307887 CATCACATTGGCCATTCAGCCTT 1 -ATCACATTGGCCATTCAGCCTT ** 22307910 ATCACACATAT-G-CATGTTCA-TATT 1 AT--CACAT-TGGCCA--TTCAGCCTT 22307934 CATCACATTGGCCATTCAGCCTT 1 -ATCACATTGGCCATTCAGCCTT 22307957 ATCACA 1 ATCACA 22307963 CATATGCATG Statistics Matches: 74, Mismatches: 8, Indels: 36 0.63 0.07 0.31 Matches are distributed among these distances: 22 20 0.27 23 20 0.27 24 20 0.27 25 14 0.19 ACGTcount: A:0.28, C:0.29, G:0.11, T:0.33 Consensus pattern (22 bp): ATCACATTGGCCATTCAGCCTT Found at i:22307891 original size:25 final size:25 Alignment explanation
Indices: 22307863--22307940 Score: 69 Period size: 25 Copynumber: 3.2 Consensus size: 25 22307853 ATTCAGCCTT 22307863 ATCACACATATGCATGTTCATATTC 1 ATCACACATATGCATGTTCATATTC ** 22307888 AT--CACAT-TGGCCA--TTCAGCCTT- 1 ATCACACATAT-G-CATGTTCA-TATTC 22307910 ATCACACATATGCATGTTCATATTC 1 ATCACACATATGCATGTTCATATTC 22307935 ATCACA 1 ATCACA 22307941 TTGGCCATTC Statistics Matches: 40, Mismatches: 4, Indels: 18 0.65 0.06 0.29 Matches are distributed among these distances: 22 7 0.17 23 10 0.25 24 10 0.25 25 13 0.32 ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33 Consensus pattern (25 bp): ATCACACATATGCATGTTCATATTC Found at i:22307985 original size:25 final size:25 Alignment explanation
Indices: 22307863--22307987 Score: 76 Period size: 24 Copynumber: 5.2 Consensus size: 25 22307853 ATTCAGCCTT * 22307863 ATCACACATATGCATGTTCATATTC 1 ATCACACATATGCATGTTCACATTC * 22307888 AT--CACAT-TGGCCA--TTCAGCCTT- 1 ATCACACATAT-G-CATGTTCA-CATTC * 22307910 ATCACACATATGCATGTTCATATTC 1 ATCACACATATGCATGTTCACATTC * 22307935 AT--CACAT-TGGCCA--TTCAGCCTT- 1 ATCACACATAT-G-CATGTTCA-CATTC 22307957 ATCACACATATGCATGTTCACATTC 1 ATCACACATATGCATGTTCACATTC 22307982 ATCACA 1 ATCACA 22307988 TTTCCCATTC Statistics Matches: 75, Mismatches: 7, Indels: 36 0.64 0.06 0.31 Matches are distributed among these distances: 22 14 0.19 23 20 0.27 24 21 0.28 25 20 0.27 ACGTcount: A:0.30, C:0.28, G:0.10, T:0.33 Consensus pattern (25 bp): ATCACACATATGCATGTTCACATTC Found at i:22310896 original size:48 final size:48 Alignment explanation
Indices: 22310838--22311242 Score: 625 Period size: 48 Copynumber: 8.4 Consensus size: 48 22310828 ATATACACAC * * 22310838 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT * * 22310886 ATCTCATACATATTTCACATTAGCCATTCGGC-TTACCACATGTACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT * 22310933 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT * 22310981 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT * 22311029 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCAC--ATATACAT * * * 22311079 TTCTCATGCATATTTCACA-TTGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT * * 22311126 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT * * 22311174 ATCTCATATATTTTTCACAGTAGCCATTCGGCTTTACCACATATATACAT 1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCAC--ATATACAT * 22311224 TTCTCATACATATTTCACA 1 ATCTCATACATATTTCACA 22311243 TATTCACTAC Statistics Matches: 331, Mismatches: 20, Indels: 10 0.92 0.06 0.03 Matches are distributed among these distances: 47 70 0.21 48 194 0.59 49 19 0.06 50 48 0.15 ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36 Consensus pattern (48 bp): ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT Found at i:22311157 original size:193 final size:192 Alignment explanation
Indices: 22310823--22311242 Score: 646 Period size: 193 Copynumber: 2.2 Consensus size: 192 22310813 GGTCATTCGG * * 22310823 CCACAATATACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT 1 CCACAATAT--ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT * * 22310888 CTCATACATATTTCACATTAGCCATTCGGCTTACCACATGTACATATCTCATACATATTTCACAT 64 CTCATACATATTTCACATTAGCCATTCGGCTTACCACATATACATATCTCATACATATTTCACAG * 22310953 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA 129 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA * * * 22311017 CCAC-ATATACATATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATATACATTT 1 CCACAATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATACATAT * * 22311081 CTCATGCATATTTCACATT-GCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACA 64 CTCATACATATTTCACATTAGCCATTCGGC-TTACCACATATACATATCTCATACATATTTCACA * * * 22311145 GTAGCCATTCGGCTTTGCCACATATACATATCTCATATATTTTTCACAGTAGCCATTCGGCTTTA 128 GTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA * 22311210 CCACATATATACATTTCTCATACATATTTCACA 1 CCACA-ATATACATATCTCATACATATTTCACA 22311243 TATTCACTAC Statistics Matches: 206, Mismatches: 15, Indels: 9 0.90 0.07 0.04 Matches are distributed among these distances: 191 40 0.19 192 10 0.05 193 127 0.62 194 4 0.02 195 25 0.12 ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35 Consensus pattern (192 bp): CCACAATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT CATACATATTTCACATTAGCCATTCGGCTTACCACATATACATATCTCATACATATTTCACAGTA GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA Found at i:22311166 original size:145 final size:146 Alignment explanation
Indices: 22310838--22311243 Score: 685 Period size: 145 Copynumber: 2.8 Consensus size: 146 22310828 ATATACACAC * * 22310838 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA * * * 22310903 CATTAGCCATTCGGC-TTACCAC--ATGTACATATCTCATACATATTTCACATTAGCCATTCGGC 66 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC 22310965 TTTACCACATATACAT 131 TTTACCACATATACAT * 22310981 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA * 22311046 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATGCATATTTCACATT-GCCATTCGGC 66 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC 22311110 TTTACCACATATACAT 131 TTTACCACATATACAT * * * * 22311126 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACATATCTCATATATTTTTCA 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA 22311191 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACAT 66 CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACAT 22311244 ATTCACTACA Statistics Matches: 248, Mismatches: 12, Indels: 4 0.94 0.05 0.02 Matches are distributed among these distances: 143 76 0.31 144 7 0.03 145 139 0.56 146 26 0.10 ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36 Consensus pattern (146 bp): ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA CAGTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC TTTACCACATATACAT Found at i:22315006 original size:40 final size:40 Alignment explanation
Indices: 22314948--22315226 Score: 414 Period size: 40 Copynumber: 7.0 Consensus size: 40 22314938 GAATACACAT * 22314948 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * * * * 22314988 CATCGGCACGAATACCCTTCGAGATTTAGCCCGGATATAA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * * * * 22315028 CATCGGCACGAATGCCCTTCGGGATTTTGCCCGGACATAA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * 22315068 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * 22315108 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * 22315148 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * 22315188 CATCGGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA 1 CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATA 22315227 TAAATCTCAA Statistics Matches: 222, Mismatches: 17, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 40 222 1.00 ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21 Consensus pattern (40 bp): CACCGGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA Found at i:22316797 original size:22 final size:22 Alignment explanation
Indices: 22316769--22316846 Score: 68 Period size: 22 Copynumber: 3.4 Consensus size: 22 22316759 ATGTTCACAT 22316769 TTATCACATTGGCCTTTCGGCC 1 TTATCACATTGGCCTTTCGGCC * * * * 22316791 TTATCACATATATGCATGTTC-ACA 1 TTATCACAT-T-GGCCT-TTCGGCC * 22316815 TTCATCACATTGGCCATTCGGCC 1 TT-ATCACATTGGCCTTTCGGCC 22316838 TTATCACAT 1 TTATCACAT 22316847 ATATACATGT Statistics Matches: 42, Mismatches: 9, Indels: 10 0.69 0.15 0.16 Matches are distributed among these distances: 22 19 0.45 23 6 0.14 24 7 0.17 25 10 0.24 ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36 Consensus pattern (22 bp): TTATCACATTGGCCTTTCGGCC Found at i:22316893 original size:22 final size:22 Alignment explanation
Indices: 22316769--22316893 Score: 67 Period size: 22 Copynumber: 5.4 Consensus size: 22 22316759 ATGTTCACAT * 22316769 TTATCACATTGGCCTTTCGGCC 1 TTATCACATTGGCCATTCGGCC * * * 22316791 TTATCACATATATG-CATGTTC-ACA 1 TTATCACAT-T-GGCCA--TTCGGCC 22316815 TTCATCACATTGGCCATTCGGCC 1 TT-ATCACATTGGCCATTCGGCC *** * * 22316838 TTATCACATATATACATGTTC-ACA 1 TTATCACAT-TGGCCA--TTCGGCC 22316862 TTCATCACATTGGCCATTCGGCC 1 TT-ATCACATTGGCCATTCGGCC 22316885 TTATCACAT 1 TTATCACAT 22316894 ATATGCATGT Statistics Matches: 74, Mismatches: 17, Indels: 24 0.64 0.15 0.21 Matches are distributed among these distances: 22 29 0.39 23 12 0.16 24 13 0.18 25 20 0.27 ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35 Consensus pattern (22 bp): TTATCACATTGGCCATTCGGCC Found at i:22317033 original size:22 final size:22 Alignment explanation
Indices: 22317006--22317081 Score: 66 Period size: 22 Copynumber: 3.3 Consensus size: 22 22316996 GTTCATATTC 22317006 ATCACATTGGCCATTCGGCCTT 1 ATCACATTGGCCATTCGGCCTT * * * 22317028 ATCACATATATG-CATGTTC-ACATT 1 ATCACAT-T-GGCCA--TTCGGCCTT 22317052 CATCACATTGGCCATTCGGCCTT 1 -ATCACATTGGCCATTCGGCCTT 22317075 ATCACAT 1 ATCACAT 22317082 ATATGCAGGT Statistics Matches: 41, Mismatches: 6, Indels: 14 0.67 0.10 0.23 Matches are distributed among these distances: 22 17 0.41 23 7 0.17 24 7 0.17 25 10 0.24 ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33 Consensus pattern (22 bp): ATCACATTGGCCATTCGGCCTT Found at i:22317265 original size:47 final size:47 Alignment explanation
Indices: 22316721--22317263 Score: 888 Period size: 47 Copynumber: 11.6 Consensus size: 47 22316711 CACATCCACG * * 22316721 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * 22316768 TTTATCACATTGGCCTTTCGGCCTTATCACATATATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * 22316815 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * 22316862 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * 22316909 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * 22316956 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA 22317003 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * 22317050 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCAGGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * 22317097 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * 22317144 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * * * * * 22317191 TTCATCATATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA 1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA * 22317238 TTCATCACATTTGCCATTCGGCCTTA 1 TTCATCACATTGGCCATTCGGCCTTA 22317264 GCTCATGTAT Statistics Matches: 472, Mismatches: 24, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 47 472 1.00 ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35 Consensus pattern (47 bp): TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA Found at i:22320234 original size:2 final size:2 Alignment explanation
Indices: 22320227--22320254 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 22320217 AAAGTTTAAG 22320227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 22320255 CTGATAACAT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:22323771 original size:39 final size:39 Alignment explanation
Indices: 22323727--22323963 Score: 402 Period size: 39 Copynumber: 6.1 Consensus size: 39 22323717 ATGCAAGACA * 22323727 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 22323766 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG * * * 22323805 TTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 22323844 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG * * 22323883 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG * * 22323922 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 22323961 CTG 1 CTG 22323964 ATAATATAAT Statistics Matches: 185, Mismatches: 13, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 39 185 1.00 ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24 Consensus pattern (39 bp): CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG Found at i:22332476 original size:39 final size:39 Alignment explanation
Indices: 22332419--22332568 Score: 254 Period size: 39 Copynumber: 3.9 Consensus size: 39 22332409 ATGCAAGACA 22332419 CTGG-AAT-TATCC-GGCTAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 22332455 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC-TCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG * * 22332493 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG 22332532 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCG 1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCG 22332569 GCTTTGTGCT Statistics Matches: 106, Mismatches: 4, Indels: 5 0.92 0.03 0.04 Matches are distributed among these distances: 36 4 0.04 37 3 0.03 38 41 0.39 39 58 0.55 ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22 Consensus pattern (39 bp): CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG Found at i:22332523 original size:77 final size:74 Alignment explanation
Indices: 22332419--22332565 Score: 258 Period size: 77 Copynumber: 1.9 Consensus size: 74 22332409 ATGCAAGACA * 22332419 CTGGAATTATCCGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC 1 CTGGAATTATCCGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC 22332484 AGGCTCGTG 66 AGGCTCGTG 22332493 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC 1 CTGG-AAT-TATCC-GGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC 22332558 CGCAGGCT 63 CGCAGGCT 22332566 TCGGCTTTGT Statistics Matches: 69, Mismatches: 1, Indels: 3 0.95 0.01 0.04 Matches are distributed among these distances: 74 4 0.06 75 3 0.04 76 5 0.07 77 57 0.83 ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22 Consensus pattern (74 bp): CTGGAATTATCCGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGC AGGCTCGTG Found at i:22338525 original size:40 final size:40 Alignment explanation
Indices: 22338481--22338745 Score: 401 Period size: 40 Copynumber: 6.6 Consensus size: 40 22338471 CCTACTCGCT * * 22338481 CAAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTCA-CA 1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACT-AGCA * * 22338521 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA * * 22338561 CAAATGCCTTCGGGACTTATCCCGGAATTAGTCACCAGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA * 22338601 CAAATGCCTTTGGGACTTAGCCCGGAATTAGTCACTAGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA * 22338641 CAAATGCCTTCGGGACTTAGCCCGGAATTTGTCACTAGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA * 22338681 CAAATGCCTTCGGGATTTAGCCCGGAATTAGTCACTAGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA 22338721 CAAATGCCTTCGGGACTTAGCCCGG 1 CAAATGCCTTCGGGACTTAGCCCGG 22338746 TTACTATCCG Statistics Matches: 209, Mismatches: 14, Indels: 4 0.92 0.06 0.02 Matches are distributed among these distances: 40 207 0.99 41 2 0.01 ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA Found at i:22346360 original size:40 final size:40 Alignment explanation
Indices: 22346281--22346540 Score: 384 Period size: 40 Copynumber: 6.5 Consensus size: 40 22346271 CTAAACCAAG * * * 22346281 TGCCTTCGGGATTTAG-CC-GAATATAG-CTACTCGCTCAAA 1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTC-ACTAGCACAAA * * * 22346320 TGCCTTCAGGACTTAGCCCGG-ATATAGTAACTCGCACAAA 1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAA * * 22346360 TGCCTTCGAGACTTAGCCCGGAATTAGTCACCAGCACAAA 1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA 22346400 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA 1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA 22346440 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA 1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA * 22346480 TGCCTTCGGGATTTAGCCCGGAATTAGTCACTAGCACAAA 1 TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA 22346520 TGCCTTCGGGACTTAGCCCGG 1 TGCCTTCGGGACTTAGCCCGG 22346541 TTACCATCCA Statistics Matches: 204, Mismatches: 13, Indels: 7 0.91 0.06 0.03 Matches are distributed among these distances: 39 14 0.07 40 187 0.92 41 3 0.01 ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23 Consensus pattern (40 bp): TGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAA Found at i:22347890 original size:30 final size:30 Alignment explanation
Indices: 22347855--22347916 Score: 115 Period size: 30 Copynumber: 2.1 Consensus size: 30 22347845 TTTTCTTTTA * 22347855 TTATCCTTATTATTTGTTTTATTTATTTCC 1 TTATCCTTATTATTTCTTTTATTTATTTCC 22347885 TTATCCTTATTATTTCTTTTATTTATTTCC 1 TTATCCTTATTATTTCTTTTATTTATTTCC 22347915 TT 1 TT 22347917 TCTTTTACAT Statistics Matches: 31, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 30 31 1.00 ACGTcount: A:0.16, C:0.15, G:0.02, T:0.68 Consensus pattern (30 bp): TTATCCTTATTATTTCTTTTATTTATTTCC Found at i:22352369 original size:29 final size:29 Alignment explanation
Indices: 22352336--22352438 Score: 120 Period size: 29 Copynumber: 3.6 Consensus size: 29 22352326 GCCCACTAAG * * 22352336 CCAAATCATATTCATATGGCCTATTAGGC 1 CCAAATCACATTCATATGGCCCATTAGGC * * 22352365 CCAAATCACCTGT-ATATAGCCCATTAGGC 1 CCAAATCACAT-TCATATGGCCCATTAGGC * * 22352394 CCAAATCACATTTACATGGCCCATTAGGC 1 CCAAATCACATTCATATGGCCCATTAGGC * 22352423 CC-AGTCACATTCATAT 1 CCAAATCACATTCATAT 22352439 TCATACTCAC Statistics Matches: 62, Mismatches: 10, Indels: 5 0.81 0.13 0.06 Matches are distributed among these distances: 28 12 0.19 29 49 0.79 30 1 0.02 ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27 Consensus pattern (29 bp): CCAAATCACATTCATATGGCCCATTAGGC Found at i:22354993 original size:26 final size:26 Alignment explanation
Indices: 22354964--22355023 Score: 66 Period size: 28 Copynumber: 2.2 Consensus size: 26 22354954 TCCCTTTGAA * * * 22354964 TCATTCGATATTTTGCACACTAAGTG 1 TCATTCAATATCTCGCACACTAAGTG 22354990 TCATTCTCAATATCTCGCACACTAAGTG 1 TCA-T-TCAATATCTCGCACACTAAGTG * 22355018 CCATTC 1 TCATTC 22355024 TCAATATTTC Statistics Matches: 28, Mismatches: 4, Indels: 4 0.78 0.11 0.11 Matches are distributed among these distances: 26 5 0.18 27 2 0.07 28 21 0.75 ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35 Consensus pattern (26 bp): TCATTCAATATCTCGCACACTAAGTG Found at i:22355009 original size:28 final size:28 Alignment explanation
Indices: 22354978--22355049 Score: 99 Period size: 28 Copynumber: 2.6 Consensus size: 28 22354968 TCGATATTTT * 22354978 GCACACTAAGTGTCATTCTCAATATCTC 1 GCACACTAAGTGCCATTCTCAATATCTC * 22355006 GCACACTAAGTGCCATTCTCAATATTTC 1 GCACACTAAGTGCCATTCTCAATATCTC * * * 22355034 GTACACTGAGTACCAT 1 GCACACTAAGTGCCAT 22355050 ATTTGATTGC Statistics Matches: 39, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 28 39 1.00 ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31 Consensus pattern (28 bp): GCACACTAAGTGCCATTCTCAATATCTC Found at i:22360016 original size:56 final size:56 Alignment explanation
Indices: 22359954--22360245 Score: 445 Period size: 54 Copynumber: 5.3 Consensus size: 56 22359944 TGATCTCATT ** * * 22359954 TCACACACTTAGTGCCCCAACAACCGATCTTGCA-ACACAGTGCTTGGTTACGGAAC 1 TCACACACACAGTGCCTCAACAACCGATC-TGCACACACAGTGCTCGGTTACGGAAC 22360010 T--CACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC 1 TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC * * 22360064 TCGCACACACAGTACCTCAACAACCGATCTGCACACACAGTGCT-GGTTACGGAAC 1 TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC * 22360119 TCGCACACACAGTGCCTCAACAA-CGATCTCGCACACACAGTGCTCGGTTACGGAAC 1 TCACACACACAGTGCCTCAACAACCGATCT-GCACACACAGTGCTCGGTTACGGAAC * 22360175 TCACACACACAGTGCCTCAACAACCG-TC-ACACACACAGTGCTCGGTTACGGAAC 1 TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC 22360229 TCACACACACAGTGCCT 1 TCACACACACAGTGCCT 22360246 ATGTTCACTT Statistics Matches: 222, Mismatches: 8, Indels: 14 0.91 0.03 0.06 Matches are distributed among these distances: 53 4 0.02 54 93 0.42 55 47 0.21 56 76 0.34 57 2 0.01 ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17 Consensus pattern (56 bp): TCACACACACAGTGCCTCAACAACCGATCTGCACACACAGTGCTCGGTTACGGAAC Found at i:22360069 original size:28 final size:28 Alignment explanation
Indices: 22359988--22360243 Score: 174 Period size: 28 Copynumber: 9.3 Consensus size: 28 22359978 CGATCTTGCA * 22359988 ACACAGTGCTTGGTTACGGAACT--CAC 1 ACACAGTGCTCGGTTACGGAACTCGCAC **** * * 22360014 ACACAGTGCCTCAACAACCGATCT-GCAC 1 ACACAGTG-CTCGGTTACGGAACTCGCAC 22360042 ACACAGTGCTCGGTTACGGAACTCGCAC 1 ACACAGTGCTCGGTTACGGAACTCGCAC * **** * * 22360070 ACACAGTACCTCAACAACCGATCT-GCAC 1 ACACAGT-GCTCGGTTACGGAACTCGCAC 22360098 ACACAGTGCT-GGTTACGGAACTCGCAC 1 ACACAGTGCTCGGTTACGGAACTCGCAC **** * 22360125 ACACAGTGCCTCAACAAC-GATCTCGCAC 1 ACACAGTG-CTCGGTTACGGAACTCGCAC * 22360153 ACACAGTGCTCGGTTACGGAACTCACAC 1 ACACAGTGCTCGGTTACGGAACTCGCAC * * 22360181 ACACAGTGC-C--TCAAC--AACCGTCACAC 1 ACACAGTGCTCGGT-TACGGAA-C-TCGCAC * 22360207 ACACAGTGCTCGGTTACGGAACTCACAC 1 ACACAGTGCTCGGTTACGGAACTCGCAC 22360235 ACACAGTGC 1 ACACAGTGC 22360244 CTATGTTCAC Statistics Matches: 174, Mismatches: 40, Indels: 30 0.71 0.16 0.12 Matches are distributed among these distances: 24 2 0.01 25 2 0.01 26 31 0.18 27 38 0.22 28 86 0.49 29 13 0.07 30 2 0.01 ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16 Consensus pattern (28 bp): ACACAGTGCTCGGTTACGGAACTCGCAC Found at i:22362235 original size:26 final size:26 Alignment explanation
Indices: 22362206--22362265 Score: 66 Period size: 28 Copynumber: 2.2 Consensus size: 26 22362196 TCCCTTTGAA * * * 22362206 TCATTCGATATTTTGCACACTAAGTG 1 TCATTCAATATCTCGCACACTAAGTG 22362232 TCATTCTCAATATCTCGCACACTAAGTG 1 TCA-T-TCAATATCTCGCACACTAAGTG * 22362260 CCATTC 1 TCATTC 22362266 TCAATATTTC Statistics Matches: 28, Mismatches: 4, Indels: 4 0.78 0.11 0.11 Matches are distributed among these distances: 26 5 0.18 27 2 0.07 28 21 0.75 ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35 Consensus pattern (26 bp): TCATTCAATATCTCGCACACTAAGTG Found at i:22362251 original size:28 final size:28 Alignment explanation
Indices: 22362220--22362291 Score: 99 Period size: 28 Copynumber: 2.6 Consensus size: 28 22362210 TCGATATTTT * 22362220 GCACACTAAGTGTCATTCTCAATATCTC 1 GCACACTAAGTGCCATTCTCAATATCTC * 22362248 GCACACTAAGTGCCATTCTCAATATTTC 1 GCACACTAAGTGCCATTCTCAATATCTC * * * 22362276 GTACACTGAGTACCAT 1 GCACACTAAGTGCCAT 22362292 ATTTGATTGC Statistics Matches: 39, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 28 39 1.00 ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31 Consensus pattern (28 bp): GCACACTAAGTGCCATTCTCAATATCTC Found at i:22367254 original size:29 final size:29 Alignment explanation
Indices: 22367174--22367264 Score: 105 Period size: 29 Copynumber: 3.2 Consensus size: 29 22367164 GGACCACTAA * * * 22367174 GCCC-AATCATATTCATATGGCCAATTAG 1 GCCCAAATCACATTTATATGGCCCATTAG * * * 22367202 GCCCAAGTCACCTATATATGGCCCATTAG 1 GCCCAAATCACATTTATATGGCCCATTAG 22367231 GCCCAAATCACATTTATATGGCCCGA-TAG 1 GCCCAAATCACATTTATATGGCCC-ATTAG 22367260 GCCCA 1 GCCCA 22367265 GTCATGTTCA Statistics Matches: 52, Mismatches: 9, Indels: 3 0.81 0.14 0.05 Matches are distributed among these distances: 28 4 0.08 29 47 0.90 30 1 0.02 ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24 Consensus pattern (29 bp): GCCCAAATCACATTTATATGGCCCATTAG Found at i:22368731 original size:43 final size:43 Alignment explanation
Indices: 22368666--22368811 Score: 220 Period size: 43 Copynumber: 3.4 Consensus size: 43 22368656 ATTTGAAAAC * ** * 22368666 AACGCCGCTAAAGGTCCTGACCTTTAGCGGTGCTTTTCCCACA 1 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA 22368709 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA 1 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA * * * 22368752 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGGTTTTCCAAAA 1 AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA * 22368795 AACGCCGCTAAAGGTCA 1 AACGCCGCCAAAGGTCA 22368812 TAAAAATTAA Statistics Matches: 95, Mismatches: 8, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 43 95 1.00 ACGTcount: A:0.25, C:0.32, G:0.23, T:0.20 Consensus pattern (43 bp): AACGCCGCCAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACA Found at i:22373992 original size:23 final size:22 Alignment explanation
Indices: 22373973--22374035 Score: 67 Period size: 23 Copynumber: 2.8 Consensus size: 22 22373963 TAAAAAATGC 22373973 TAATACAATTACATATAAAATTT 1 TAATACAATTACATATAAAA-TT * 22373996 TAATA-AATATAAAT-TAAAAATT 1 TAATACAAT-TACATAT-AAAATT 22374018 TAAATACAATTACATATA 1 T-AATACAATTACATATA 22374036 TAGGATATTA Statistics Matches: 33, Mismatches: 2, Indels: 10 0.73 0.04 0.22 Matches are distributed among these distances: 22 7 0.21 23 22 0.67 24 4 0.12 ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37 Consensus pattern (22 bp): TAATACAATTACATATAAAATT Found at i:22374526 original size:21 final size:21 Alignment explanation
Indices: 22374500--22374561 Score: 74 Period size: 21 Copynumber: 3.0 Consensus size: 21 22374490 TCTAAACTCT * 22374500 AAACCCTTAACCCTTAACCCC 1 AAACCCTTAACCCTTAAACCC * 22374521 AAACCCTT-ACACCTTAAACTC 1 AAACCCTTAAC-CCTTAAACCC * 22374542 TAA-CCTTAACCCTTAAACCC 1 AAACCCTTAACCCTTAAACCC 22374562 TAAATTATAA Statistics Matches: 35, Mismatches: 4, Indels: 5 0.80 0.09 0.11 Matches are distributed among these distances: 20 15 0.43 21 20 0.57 ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23 Consensus pattern (21 bp): AAACCCTTAACCCTTAAACCC Found at i:22374651 original size:21 final size:21 Alignment explanation
Indices: 22374625--22374709 Score: 89 Period size: 21 Copynumber: 3.9 Consensus size: 21 22374615 ACTCCTAAAC * 22374625 CTTAAACCCTAAACCATATAT 1 CTTAAACCATAAACCATATAT * * 22374646 CTTAAACCATAGTTAACTCAAAAAT 1 CTTAAACCATA---AAC-CATATAT * * 22374671 CTTAAACCCTAAACTATATAT 1 CTTAAACCATAAACCATATAT 22374692 CTTAAACCATAAACCATA 1 CTTAAACCATAAACCATA 22374710 AACTATAATG Statistics Matches: 51, Mismatches: 9, Indels: 8 0.75 0.13 0.12 Matches are distributed among these distances: 21 30 0.59 22 3 0.06 24 3 0.06 25 15 0.29 ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28 Consensus pattern (21 bp): CTTAAACCATAAACCATATAT Found at i:22374662 original size:46 final size:46 Alignment explanation
Indices: 22374609--22374702 Score: 152 Period size: 46 Copynumber: 2.0 Consensus size: 46 22374599 CTTCAAATAC ** 22374609 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA 1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA * * 22374655 TAGTTAACTCAAAAATCTTAAACCCTAAACTATATATCTTAAACCA 1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA 22374701 TA 1 TA 22374703 AACCATAAAC Statistics Matches: 44, Mismatches: 4, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 46 44 1.00 ACGTcount: A:0.44, C:0.24, G:0.02, T:0.30 Consensus pattern (46 bp): TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA Found at i:22374939 original size:41 final size:41 Alignment explanation
Indices: 22374874--22375133 Score: 357 Period size: 41 Copynumber: 6.4 Consensus size: 41 22374864 GTTATATGAC * 22374874 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT 1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT * 22374915 TTTTAGCGGCGTTTTTCCACAAGCGCCGCTAATGCTCTGGT 1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT * * * 22374956 TTTTAGCGGCATTTTGCCAAAAGCGCCACTAATGCTCTGGT 1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT * * * 22374997 TTTTAGCAGCGTTTTTCCACAAGTGCCGCTAATGCTCTGG- 1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT * * 22375037 TTTTAGCGGCATTTTGCCAAAAGCGCCGCTAATGCTC-GGT 1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT * * 22375077 TTTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT 1 TTTTAGCGGCG-TTTTT-CCAAAAGCGCCGCTAATGCTCTGGT * 22375118 TTTTAGTGGCGTTTTT 1 TTTTAGCGGCGTTTTT 22375134 TGATAAAACG Statistics Matches: 193, Mismatches: 22, Indels: 9 0.86 0.10 0.04 Matches are distributed among these distances: 39 2 0.01 40 47 0.24 41 139 0.72 42 5 0.03 ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36 Consensus pattern (41 bp): TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT Found at i:22377726 original size:40 final size:40 Alignment explanation
Indices: 22377670--22377746 Score: 127 Period size: 40 Copynumber: 1.9 Consensus size: 40 22377660 GATACATAAT * * 22377670 GACTCTACAGGAAAAGTGTTACTGTGTACTAAATTCAGTA 1 GACTCTACAGGAAAAGTCTTACTATGTACTAAATTCAGTA * 22377710 GACTCTACAGGCAAAGTCTTACTATGTACTAAATTCA 1 GACTCTACAGGAAAAGTCTTACTATGTACTAAATTCA 22377747 TATAGATATA Statistics Matches: 34, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 40 34 1.00 ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30 Consensus pattern (40 bp): GACTCTACAGGAAAAGTCTTACTATGTACTAAATTCAGTA Found at i:22380490 original size:42 final size:42 Alignment explanation
Indices: 22380432--22380540 Score: 114 Period size: 43 Copynumber: 2.6 Consensus size: 42 22380422 TCGACGCCTC * * * 22380432 TGTCTCAGACAGGGTCTTACACGAAAT-T-AGATATGATGCCAA 1 TGTCCCAGACACGGTCTTACACGAAATCTCA-AT-TGAGGCCAA * * ** 22380474 TGTCCCAGACATGGTCTTATACGTAAATCTCAATTGAGGCCTG 1 TGTCCCAGACACGGTCTTACACG-AAATCTCAATTGAGGCCAA 22380517 TGTCCCAGACACGGTCTTACACGA 1 TGTCCCAGACACGGTCTTACACGA 22380541 TGTCTCAAAT Statistics Matches: 56, Mismatches: 8, Indels: 6 0.80 0.11 0.09 Matches are distributed among these distances: 42 21 0.38 43 31 0.55 44 3 0.05 45 1 0.02 ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27 Consensus pattern (42 bp): TGTCCCAGACACGGTCTTACACGAAATCTCAATTGAGGCCAA Found at i:22382779 original size:2 final size:2 Alignment explanation
Indices: 22382766--22382796 Score: 53 Period size: 2 Copynumber: 15.5 Consensus size: 2 22382756 CAATTGTATC * 22382766 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 22382797 AAGCAGTTAA Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (2 bp): AT Found at i:22386450 original size:40 final size:41 Alignment explanation
Indices: 22386367--22386474 Score: 132 Period size: 40 Copynumber: 2.7 Consensus size: 41 22386357 TCGAATGATG * 22386367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA * * ** 22386407 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAA * 22386447 TCCGGGTTAAGTCCCGAAGGCATTTGTG 1 TCCGGGCTAAGTCCCGAAGGCATTTGTG 22386475 TGAGCTATTA Statistics Matches: 58, Mismatches: 7, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 39 1 0.02 40 49 0.84 41 8 0.14 ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25 Consensus pattern (41 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA Found at i:22396819 original size:24 final size:24 Alignment explanation
Indices: 22396792--22396838 Score: 76 Period size: 24 Copynumber: 2.0 Consensus size: 24 22396782 TATAATATGA * * 22396792 AAAATGACTATTTTACCCCTAGGT 1 AAAATGACCATTATACCCCTAGGT 22396816 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 22396839 GTTTAATTAT Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 21 1.00 ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28 Consensus pattern (24 bp): AAAATGACCATTATACCCCTAGGT Found at i:22396901 original size:11 final size:11 Alignment explanation
Indices: 22396885--22396922 Score: 53 Period size: 11 Copynumber: 3.6 Consensus size: 11 22396875 ACACGATTGG 22396885 ACATGATATGC 1 ACATGATATGC 22396896 ACATGATATG- 1 ACATGATATGC * 22396906 -TATGATATGC 1 ACATGATATGC 22396916 ACATGAT 1 ACATGAT 22396923 GTATTCATTT Statistics Matches: 23, Mismatches: 2, Indels: 4 0.79 0.07 0.14 Matches are distributed among these distances: 9 8 0.35 11 15 0.65 ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32 Consensus pattern (11 bp): ACATGATATGC Found at i:22397008 original size:24 final size:25 Alignment explanation
Indices: 22396970--22397039 Score: 88 Period size: 24 Copynumber: 2.8 Consensus size: 25 22396960 GAGGAAGTGC * 22396970 AAAAGGGCTTTTGCCCCAGTTTACCG 1 AAAAGGGC-TTTGCCCCAGTTTACCA * * * 22396996 AAAA-GGCTTTGCCCTAATTTATCA 1 AAAAGGGCTTTGCCCCAGTTTACCA 22397020 AAAAGGGCTTTGCCCCAGTT 1 AAAAGGGCTTTGCCCCAGTT 22397040 ATTAAAAGAG Statistics Matches: 37, Mismatches: 6, Indels: 3 0.80 0.13 0.07 Matches are distributed among these distances: 24 17 0.46 25 16 0.43 26 4 0.11 ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29 Consensus pattern (25 bp): AAAAGGGCTTTGCCCCAGTTTACCA Found at i:22397052 original size:24 final size:24 Alignment explanation
Indices: 22397020--22397066 Score: 60 Period size: 25 Copynumber: 2.0 Consensus size: 24 22397010 TAATTTATCA ** 22397020 AAAAGGGCTTTGCC-CCAGTTATT 1 AAAAGGGCTAGGCCTCCAGTTATT 22397043 AAAAGAGGCTAGGCCTCCAGTTAT 1 AAAAG-GGCTAGGCCTCCAGTTAT 22397067 ATGATAAAGT Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 23 5 0.25 24 7 0.35 25 8 0.40 ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26 Consensus pattern (24 bp): AAAAGGGCTAGGCCTCCAGTTATT Found at i:22397293 original size:30 final size:31 Alignment explanation
Indices: 22397259--22397341 Score: 125 Period size: 30 Copynumber: 2.7 Consensus size: 31 22397249 CGTTTACAGT 22397259 AAAGGCTTCGGCCCAGTGATATG-ATAATGA 1 AAAGGCTTCGGCCCAGTGATATGAATAATGA * * * 22397289 AAAGGCTTCGGCCTAGTGACATGAATAATGC 1 AAAGGCTTCGGCCCAGTGATATGAATAATGA 22397320 AAAGGCTTCGGCCCAGT-ATATG 1 AAAGGCTTCGGCCCAGTGATATG 22397342 TTGAGATTGA Statistics Matches: 47, Mismatches: 5, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 30 25 0.53 31 22 0.47 ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGAATAATGA Found at i:22397324 original size:31 final size:30 Alignment explanation
Indices: 22397259--22397336 Score: 120 Period size: 31 Copynumber: 2.6 Consensus size: 30 22397249 CGTTTACAGT * 22397259 AAAGGCTTCGGCCCAGTGATATGATAATGA 1 AAAGGCTTCGGCCCAGTGACATGATAATGA * * 22397289 AAAGGCTTCGGCCTAGTGACATGAATAATGC 1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA 22397320 AAAGGCTTCGGCCCAGT 1 AAAGGCTTCGGCCCAGT 22397337 ATATGTTGAG Statistics Matches: 43, Mismatches: 4, Indels: 1 0.90 0.08 0.02 Matches are distributed among these distances: 30 21 0.49 31 22 0.51 ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22 Consensus pattern (30 bp): AAAGGCTTCGGCCCAGTGACATGATAATGA Found at i:22403604 original size:40 final size:40 Alignment explanation
Indices: 22403549--22403726 Score: 297 Period size: 40 Copynumber: 4.5 Consensus size: 40 22403539 CGGATGATAA 22403549 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT 22403589 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * 22403629 CCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 22403669 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT * 22403709 CC-GGCTAAATCCCGAAGG 1 CCGGGCTAAGTCCCGAAGG 22403727 TACTCGGTTT Statistics Matches: 131, Mismatches: 6, Indels: 3 0.94 0.04 0.02 Matches are distributed among these distances: 39 17 0.13 40 114 0.87 ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT Done.