Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 86 of 427
Found at i:22409819 original size:24 final size:24
Alignment explanation
Indices: 22409779--22409824 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
22409769 ACCAACCCGA
*
22409779 AAAGTTAAAAAAGAAATCGGCAGC
1 AAAGTTAAAAAAGAAATAGGCAGC
*
22409803 AAAGTTAGAAACA-AAATAGGCA
1 AAAGTTA-AAAAAGAAATAGGCA
22409825 CTCAGTTAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.57, C:0.11, G:0.20, T:0.13
Consensus pattern (24 bp):
AAAGTTAAAAAAGAAATAGGCAGC
Found at i:22414068 original size:24 final size:25
Alignment explanation
Indices: 22414035--22414096 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
22414025 ATAAAAACAT
*
22414035 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
22414060 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
22414084 TACATAATATATA
1 TACATAATATATA
22414097 CATAACATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:22414499 original size:23 final size:23
Alignment explanation
Indices: 22414468--22414530 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
22414458 ATATGTATAC
*
22414468 ATAAAAATATAT-TAGGAACAACA
1 ATAAAAATATATATA-AAACAACA
* *
22414491 ATAATAATATATATAAAACAACT
1 ATAAAAATATATATAAAACAACA
*
22414514 ATAAGAATATATATAAA
1 ATAAAAATATATATAAA
22414531 GTATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 33 0.94
24 2 0.06
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (23 bp):
ATAAAAATATATATAAAACAACA
Found at i:22414539 original size:23 final size:23
Alignment explanation
Indices: 22414484--22414530 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
22414474 ATATATTAGG
* *
22414484 AACAACAATAATAATATATATAA
1 AACAACTATAAGAATATATATAA
22414507 AACAACTATAAGAATATATATAA
1 AACAACTATAAGAATATATATAA
22414530 A
1 A
22414531 GTATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.26
Consensus pattern (23 bp):
AACAACTATAAGAATATATATAA
Found at i:22414591 original size:19 final size:20
Alignment explanation
Indices: 22414554--22414595 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
22414544 TAGTATTAAT
22414554 TAAAAATGTCTAAATAATAA
1 TAAAAATGTCTAAATAATAA
22414574 TAAAATATGT-TAAA-AATAA
1 TAAAA-ATGTCTAAATAATAA
22414593 TAA
1 TAA
22414596 TACAAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 9 0.43
21 4 0.19
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
TAAAAATGTCTAAATAATAA
Found at i:22416280 original size:44 final size:44
Alignment explanation
Indices: 22416178--22416281 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
22416168 ATATGCTCCA
* *
22416178 CTACTGCTTAGGGAG-ATAAGATCTATAAATTTAGCTTGTCACC
1 CTACTGCTTAGGGGGTTTAAGATCTATAAATTTAGCTTGTCACC
** * * *
22416221 CTACTTATTTA-GGGGTTTAAGGTCTGTAAATTTAGCTTGTTACC
1 CTAC-TGCTTAGGGGGTTTAAGATCTATAAATTTAGCTTGTCACC
22416265 CTACTGCTTAGGGGGTT
1 CTACTGCTTAGGGGGTT
22416282 AAGCCCATCA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
43 11 0.22
44 38 0.78
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (44 bp):
CTACTGCTTAGGGGGTTTAAGATCTATAAATTTAGCTTGTCACC
Found at i:22416490 original size:44 final size:44
Alignment explanation
Indices: 22416440--22416681 Score: 161
Period size: 44 Copynumber: 5.5 Consensus size: 44
22416430 TGATCTGCTT
* *
22416440 CCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTATGAACTTTAGCTTGTTA
* * * ** * * * * *
22416484 CCCTACTACTTAGGGGGTTAA-AGCT-CGTCCCCTTCGATCCGTTT
1 CCCTACTGCTTAGGGGGTTAAGATCTATG-AACTTTAGCT-TGTTA
* * * *
22416528 CCCTACTGCTTAGGGTGATAAGATCTTATGAACTTCAACTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATC-TATGAACTTTAGCTTGTTA
* * * * * * * *
22416573 CCCTACTGCTTAGGGAGTTAA-AGCT-CGTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGATCTATG-AACTTTAGCT-TGTTA
* *
22416617 CCCTACTGCTTAGGGGGTTAAGATCTATGAA-TTCAACTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTATGAACTTTAGCTTGTTA
*
22416660 CCCTACTGCTTAGGTGGTTAAG
1 CCCTACTGCTTAGGGGGTTAAG
22416682 GTCTGGTGAA
Statistics
Matches: 141, Mismatches: 48, Indels: 19
0.68 0.23 0.09
Matches are distributed among these distances:
42 2 0.01
43 38 0.27
44 67 0.48
45 28 0.20
46 5 0.04
47 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGATCTATGAACTTTAGCTTGTTA
Found at i:22416593 original size:89 final size:88
Alignment explanation
Indices: 22416438--22416673 Score: 384
Period size: 89 Copynumber: 2.7 Consensus size: 88
22416428 TTTGATCTGC
* * * *
22416438 TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTACCCTACTACTTAGGGGGTT
1 TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAACTTGTTACCCTACTGCTTAGGGAGTT
*
22416503 AAAGCTCGTCCCCTTCGATCCGT
66 AAAGCTCGTCACCTTCGATCCGT
22416526 TTCCCTACTGCTTAGGGTGATAAGATCTTATGAACTTCAACTTGTTACCCTACTGCTTAGGGAGT
1 TTCCCTACTGCTTAGGGTGATAAGATC-TATGAACTTCAACTTGTTACCCTACTGCTTAGGGAGT
*
22416591 TAAAGCTCGTCACCTTCGATCTGT
65 TAAAGCTCGTCACCTTCGATCCGT
* *
22416615 TTCCCTACTGCTTAGGGGGTTAAGATCTATGAA-TTCAACTTGTTACCCTACTGCTTAGG
1 TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAACTTGTTACCCTACTGCTTAGG
22416674 TGGTTAAGGT
Statistics
Matches: 139, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
87 26 0.19
88 33 0.24
89 80 0.58
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (88 bp):
TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAACTTGTTACCCTACTGCTTAGGGAGTT
AAAGCTCGTCACCTTCGATCCGT
Found at i:22417251 original size:55 final size:55
Alignment explanation
Indices: 22417190--22417309 Score: 222
Period size: 55 Copynumber: 2.2 Consensus size: 55
22417180 ACAAAATTTG
* *
22417190 AAGGGAATAGATTAATCATAGTCAACAAACATTGCTGGAATACAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGCCAACAAACATTGCTGGAATACAAAATGAATAAA
22417245 AAGGGAATAGATTAATCACAGCCAACAAACATTGCTGGAATACAAAATGAATAAA
1 AAGGGAATAGATTAATCACAGCCAACAAACATTGCTGGAATACAAAATGAATAAA
22417300 AAGGGAATAG
1 AAGGGAATAG
22417310 GTGCCCCAGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (55 bp):
AAGGGAATAGATTAATCACAGCCAACAAACATTGCTGGAATACAAAATGAATAAA
Found at i:22421471 original size:40 final size:40
Alignment explanation
Indices: 22421397--22421607 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
22421387 CCTTTGGAAT
** * *
22421397 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * * *
22421435 TTATCCCGGATATGGTTACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
22421475 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
22421515 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
22421555 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
22421595 TTAGCCCAGATAT
1 TTAGCCCGGATAT
22421608 CATTCAAATA
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
38 3 0.02
39 15 0.10
40 124 0.87
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:22429545 original size:25 final size:24
Alignment explanation
Indices: 22429517--22429564 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
22429507 GATCAATCAT
*
22429517 ATAACTCATGATAATGATTAATAAC
1 ATAACTCATCATAATGA-TAATAAC
* *
22429542 ATAATTCTTCATAATGATAATAA
1 ATAACTCATCATAATGATAATAA
22429565 TAAAGATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (24 bp):
ATAACTCATCATAATGATAATAAC
Found at i:22441327 original size:29 final size:29
Alignment explanation
Indices: 22441235--22441306 Score: 144
Period size: 29 Copynumber: 2.5 Consensus size: 29
22441225 TGACGAGATC
22441235 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
22441264 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
22441293 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
22441307 AAGCTAGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:22446866 original size:31 final size:31
Alignment explanation
Indices: 22446828--22446891 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
22446818 CCTTTTCATA
*
22446828 TTTCATATTTCATAACATTAGGCCGAAGCCT
1 TTTCATATTTCATAACATTAGGCCAAAGCCT
** *
22446859 TTTCATATTTCATATTATTGGGCCAAAGCCT
1 TTTCATATTTCATAACATTAGGCCAAAGCCT
22446890 TT
1 TT
22446892 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACATTAGGCCAAAGCCT
Found at i:22447159 original size:23 final size:23
Alignment explanation
Indices: 22447083--22447198 Score: 162
Period size: 23 Copynumber: 5.0 Consensus size: 23
22447073 GCTTTATCGT
*
22447083 ATAACTGGAGGC-TTAGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
*
22447107 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
* *
22447131 ACAACTGTGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
22447154 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
22447177 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
22447199 TGCACTTCCT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
23 51 0.61
24 32 0.39
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:22447274 original size:20 final size:20
Alignment explanation
Indices: 22447249--22447315 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
22447239 TTATGAATAC
22447249 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
22447269 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22447289 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22447309 ACCATGT
1 ATCATGT
22447316 TTATCAAGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22447280 original size:11 final size:11
Alignment explanation
Indices: 22447249--22447304 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
22447239 TTATGAATAC
22447249 ATCATGTGCAT
1 ATCATGTGCAT
*
22447260 ATCA--TACAT
1 ATCATGTGCAT
22447269 ATCATGTGCAT
1 ATCATGTGCAT
*
22447280 ATCA--TACAT
1 ATCATGTGCAT
*
22447289 GTCATGTGCAT
1 ATCATGTGCAT
22447300 ATCAT
1 ATCAT
22447305 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:22453848 original size:31 final size:31
Alignment explanation
Indices: 22453785--22453848 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
22453775 CCTTTTCATA
* * *
22453785 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAACCT
**
22453816 TTTCATATTTCATATTACTGGGCCAAAACCT
1 TTTCATATTTCATAACACTGGGCCAAAACCT
22453847 TT
1 TT
22453849 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCAAAACCT
Found at i:22454114 original size:23 final size:23
Alignment explanation
Indices: 22454052--22454175 Score: 169
Period size: 23 Copynumber: 5.3 Consensus size: 23
22454042 CTAGAGGCCT
*
22454052 AGCCTCTTTAATAACTGGGGCAAA
1 AGCC-CTTTAATAACTGGGGCATA
* *
22454076 AGTCCTTTTAACAACTGGGGCATA
1 AG-CCCTTTAATAACTGGGGCATA
22454100 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
* *
22454123 AGCCCTTTAAT-AGTTGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
*
22454145 AGCCCTTTAATAACTAGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
22454168 AGCCCTTT
1 AGCCCTTT
22454176 TGCACTTCCT
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
22 20 0.22
23 47 0.53
24 20 0.22
25 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AGCCCTTTAATAACTGGGGCATA
Found at i:22454144 original size:22 final size:23
Alignment explanation
Indices: 22454038--22454175 Score: 154
Period size: 23 Copynumber: 6.0 Consensus size: 23
22454028 TGCTTTATCT
*
22454038 ATAACTAGAGGCCT-AGCCTCTTTA
1 ATAACTAG-GGCATAAGCC-CTTTA
* * *
22454062 ATAACTGGGGCAAAAGTCCTTTTA
1 ATAACTAGGGCATAAG-CCCTTTA
* *
22454086 ACAACTGGGGCATAAGCCCTTTA
1 ATAACTAGGGCATAAGCCCTTTA
*
22454109 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTAGGGCATAAGCCCTTTA
* *
22454132 AT-AGTTGGGCATAAGCCCTTTA
1 ATAACTAGGGCATAAGCCCTTTA
22454154 ATAACTAGGGCATAAGCCCTTT
1 ATAACTAGGGCATAAGCCCTTT
22454176 TGCACTTCCT
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
22 20 0.20
23 50 0.51
24 27 0.27
25 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
ATAACTAGGGCATAAGCCCTTTA
Found at i:22454157 original size:45 final size:46
Alignment explanation
Indices: 22454052--22454175 Score: 169
Period size: 45 Copynumber: 2.7 Consensus size: 46
22454042 CTAGAGGCCT
* *
22454052 AGCCTCTTTAATAACTGGGGCAAAAGTCCTTTTAACAACTGGGGCATA
1 AGCC-CTTTAATAACTGGGGCATAAG-CCCTTTAACAACTGGGGCATA
* * *
22454100 AGCCCTTTAATAACTGGGGCATAAGCCCTTTAA-TAGTTGGGCATA
1 AGCCCTTTAATAACTGGGGCATAAGCCCTTTAACAACTGGGGCATA
*
22454145 AGCCCTTTAATAACTAGGGCATAAGCCCTTT
1 AGCCCTTTAATAACTGGGGCATAAGCCCTTT
22454176 TGCACTTCCT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
45 39 0.56
46 7 0.10
47 20 0.29
48 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (46 bp):
AGCCCTTTAATAACTGGGGCATAAGCCCTTTAACAACTGGGGCATA
Found at i:22454252 original size:20 final size:20
Alignment explanation
Indices: 22454227--22454265 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
22454217 TATGAATACA
22454227 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
22454247 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
22454266 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:22454271 original size:20 final size:20
Alignment explanation
Indices: 22454228--22454272 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
22454218 ATGAATACAT
**
22454228 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
22454248 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
22454268 CATGT
1 CATGT
22454273 TTATCAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:22456269 original size:28 final size:28
Alignment explanation
Indices: 22456208--22456305 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
22456198 TCACAAATTG
** * *
22456208 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
22456237 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
22456265 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
22456293 GCACTAAGTGTGC
1 GCACTAAGTGTGC
22456306 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:22463947 original size:28 final size:28
Alignment explanation
Indices: 22463886--22463983 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
22463876 TCACAAATTG
** * *
22463886 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
22463915 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
22463943 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
22463971 GCACTAAGTGTGC
1 GCACTAAGTGTGC
22463984 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:22466985 original size:23 final size:24
Alignment explanation
Indices: 22466955--22467004 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
22466945 CTCTACGTGA
22466955 TAAGCAACTATT-GCGAAACTCAG
1 TAAGCAACTATTCGCGAAACTCAG
*
22466978 TAAGCAACTATTCGCGAAATTCAG
1 TAAGCAACTATTCGCGAAACTCAG
22467002 TAA
1 TAA
22467005 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
TAAGCAACTATTCGCGAAACTCAG
Found at i:22468565 original size:43 final size:44
Alignment explanation
Indices: 22468457--22468565 Score: 125
Period size: 43 Copynumber: 2.5 Consensus size: 44
22468447 GCGGATAGCT
* * *
22468457 CAGAAAGGGTCTTACATGT-AATCAAATATCGATGCCATTGTCC
1 CAGACAGGGTCTTACATGTAAATCAAATATCGATGCCACTATCC
* *
22468500 CAGATAGGGTCTTACATG-AAATCAAATA-CGATGCCACTATTC
1 CAGACAGGGTCTTACATGTAAATCAAATATCGATGCCACTATCC
* * *
22468542 TAGACATGGTCTTACACGTAAATC
1 CAGACAGGGTCTTACATGTAAATC
22468566 TCAAATCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 25 0.45
43 31 0.55
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (44 bp):
CAGACAGGGTCTTACATGTAAATCAAATATCGATGCCACTATCC
Found at i:22475593 original size:78 final size:81
Alignment explanation
Indices: 22475485--22475666 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
22475475 TACTCGTTCA
* *
22475485 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
22475548 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
22475564 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
22475627 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
22475643 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
22475667 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:22475666 original size:40 final size:40
Alignment explanation
Indices: 22475464--22475666 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
22475454 TCGGATTTAA
** *
22475464 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22475504 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22475544 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22475582 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
22475622 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22475662 CCGGA
1 CCGGA
22475667 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22483611 original size:78 final size:81
Alignment explanation
Indices: 22483491--22483672 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
22483481 TACTCGTTCA
* *
22483491 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
22483554 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
22483570 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
22483633 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
22483649 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
22483673 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:22483672 original size:40 final size:40
Alignment explanation
Indices: 22483470--22483672 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
22483460 CGGAGTTTAA
** *
22483470 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22483510 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22483550 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22483588 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
22483628 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22483668 CCGGA
1 CCGGA
22483673 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22486736 original size:23 final size:23
Alignment explanation
Indices: 22486674--22486821 Score: 224
Period size: 23 Copynumber: 6.3 Consensus size: 23
22486664 CTAGAGGCCT
*
22486674 AGCCTCTTTAATAACTGGGGCAAA
1 AGCC-CTTTAATAACTGGGGCATA
*
22486698 AGCCCTTTTAACAACTGGGGCATA
1 AGCCC-TTTAATAACTGGGGCATA
22486722 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
* *
22486745 AGCCTTTTAATAACTAGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
*
22486768 AGCCCTTTAATAACTTGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
22486791 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
*
22486814 AGTCCTTT
1 AGCCCTTT
22486822 TGCACTTCCT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
23 89 0.78
24 25 0.22
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AGCCCTTTAATAACTGGGGCATA
Found at i:22495727 original size:28 final size:27
Alignment explanation
Indices: 22495664--22495733 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
22495654 ATAGTGAGTC
22495664 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
22495691 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
22495719 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22495734 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:22500314 original size:31 final size:31
Alignment explanation
Indices: 22500276--22500342 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
22500266 AAGCCGTAGC
22500276 CCTTTTCATATTTCATAACACT-GGCGCGAAG
1 CCTTTTCATATTTCATAACACTAGGC-CGAAG
**
22500307 CCTTTTCATATTTCATATTACTAGGCCGAAG
1 CCTTTTCATATTTCATAACACTAGGCCGAAG
22500338 CCTTT
1 CCTTT
22500343 ACTGTAAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 30 0.91
32 3 0.09
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.37
Consensus pattern (31 bp):
CCTTTTCATATTTCATAACACTAGGCCGAAG
Found at i:22500610 original size:23 final size:23
Alignment explanation
Indices: 22500534--22500672 Score: 208
Period size: 23 Copynumber: 6.0 Consensus size: 23
22500524 GCTTTATCGT
*
22500534 ATAACTGGAGGCCT-AGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
*
22500558 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
*
22500582 ACAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
22500605 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
22500628 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
*
22500651 ATAACTAGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
22500673 TGCACTTCCT
Statistics
Matches: 107, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 74 0.69
24 33 0.31
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:22500748 original size:20 final size:20
Alignment explanation
Indices: 22500723--22500789 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
22500713 TTATGAATAC
22500723 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
22500743 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22500763 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22500783 ACCATGT
1 ATCATGT
22500790 TTATCAAGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22500754 original size:11 final size:11
Alignment explanation
Indices: 22500723--22500778 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
22500713 TTATGAATAC
22500723 ATCATGTGCAT
1 ATCATGTGCAT
*
22500734 ATCA--TACAT
1 ATCATGTGCAT
22500743 ATCATGTGCAT
1 ATCATGTGCAT
*
22500754 ATCA--TACAT
1 ATCATGTGCAT
*
22500763 GTCATGTGCAT
1 ATCATGTGCAT
22500774 ATCAT
1 ATCAT
22500779 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:22509990 original size:17 final size:18
Alignment explanation
Indices: 22509968--22510003 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
22509958 CACATTGAAG
22509968 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
22509985 TGTTTTCATTGAAAACCT
1 TGTTTTCAGTGAAAACCT
22510003 T
1 T
22510004 TCCTTAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:22511809 original size:49 final size:49
Alignment explanation
Indices: 22511748--22511883 Score: 168
Period size: 50 Copynumber: 2.8 Consensus size: 49
22511738 GTACGCATAC
* * **
22511748 TAGCCTGCACTTAATACTACACATGTGACCAACAGTTTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCAACAGTTTAATACACGTAG
* * *
22511797 TAGCTTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTTTAATACACGTAG
*
22511847 TAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTT
1 TAGCCTGCACTTAGTACTACACACGTGACCAACAGTTT
22511884 TCGGGTACGC
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
47 2 0.03
48 3 0.04
49 25 0.34
50 39 0.53
51 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAACAGTTTAATACACGTAG
Found at i:22511928 original size:101 final size:99
Alignment explanation
Indices: 22511748--22511931 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 99
22511738 GTACGCATAC
* * * *
22511748 TAGCCTGCACTTAATACTACACATGTGACCAACAGTTTGGTACACGTAGTAGCTTGCACTTAGTA
1 TAGCCTGCACTTAATACTACACACGTGACCAACAGTTTGGTACACATAGTAGCCTACACTTAGTA
*
22511813 CTACACACGTGACCTCACCATCTAATACACGTAG
66 CTACACACGCGACCTCACCATCTAATACACGTAG
* * * *
22511847 TAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTACATTTA
1 TAGCCTGCACTTAATACTACACACGTGACCAACAG-TTT--GGTACACATAGTAGCCTACACTTA
*
22511911 GTACTACACATGCGACCTCAC
63 GTACTACACACGCGACCTCAC
22511932 AATAGATCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
98 4 0.06
99 30 0.42
101 38 0.53
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (99 bp):
TAGCCTGCACTTAATACTACACACGTGACCAACAGTTTGGTACACATAGTAGCCTACACTTAGTA
CTACACACGCGACCTCACCATCTAATACACGTAG
Found at i:22515064 original size:40 final size:40
Alignment explanation
Indices: 22515008--22515238 Score: 338
Period size: 40 Copynumber: 5.8 Consensus size: 40
22514998 CGGATGATAA
*
22515008 CCGGGCTAAGTACCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
22515048 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
22515088 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * * *
22515128 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
22515168 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
22515208 CCGGGCTATGTCCTGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
22515239 AGCTATATCC
Statistics
Matches: 177, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 8 0.05
40 169 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:22516960 original size:15 final size:15
Alignment explanation
Indices: 22516904--22516968 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 15
22516894 TAAAGATAAC
* *
22516904 AAGAAAACC-GAATA
1 AAGAAATCCAGAACA
22516918 AAGAAATCCA-AGACA
1 AAGAAATCCAGA-ACA
*
22516933 GAA-AAACCCAGAACA
1 -AAGAAATCCAGAACA
*
22516948 AAGAAATCCAGAATA
1 AAGAAATCCAGAACA
22516963 AAGAAA
1 AAGAAA
22516969 CCCAAGATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 11 0.27
15 27 0.66
16 3 0.07
ACGTcount: A:0.63, C:0.17, G:0.14, T:0.06
Consensus pattern (15 bp):
AAGAAATCCAGAACA
Found at i:22520118 original size:27 final size:26
Alignment explanation
Indices: 22520087--22520139 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
22520077 ATTCAGCACC
* *
22520087 TAGGGGTATTTTGGTCATTTTCACCTT
1 TAGGGGCATTTTGGTAATTTTC-CCTT
22520114 TAGGGGCATTTTGGTAATTTTCCCTT
1 TAGGGGCATTTTGGTAATTTTCCCTT
22520140 ATTACAGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.47
Consensus pattern (26 bp):
TAGGGGCATTTTGGTAATTTTCCCTT
Found at i:22522897 original size:48 final size:48
Alignment explanation
Indices: 22522826--22522967 Score: 257
Period size: 48 Copynumber: 3.0 Consensus size: 48
22522816 CAAGATAAAT
* *
22522826 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
22522874 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
22522922 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
22522968 GATGTGTGTG
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 90 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:22523152 original size:37 final size:37
Alignment explanation
Indices: 22523102--22523222 Score: 215
Period size: 37 Copynumber: 3.3 Consensus size: 37
22523092 ACATGAAACT
22523102 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
22523139 TGGAGATTATGTCCGGGTAAGACCCGACGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
22523176 TGGAGATTTTGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
22523213 TGGGGATTAT
1 TGGAGATTAT
22523223 TCGAGCTAAG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:22524354 original size:28 final size:28
Alignment explanation
Indices: 22524311--22524399 Score: 108
Period size: 28 Copynumber: 3.1 Consensus size: 28
22524301 CTTATATATA
* * *
22524311 TATATAGCCCACTAGGCCCAATCTC-TT
1 TATATGGCCCAATAGGCCCAATCACATT
*
22524338 TCATATGGCCCAATAGGCCCATTCACATT
1 T-ATATGGCCCAATAGGCCCAATCACATT
*
22524367 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCAATAGGCCC-AATCACATT
22524396 TATA
1 TATA
22524400 GTCATTGTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.02
28 37 0.70
29 15 0.28
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (28 bp):
TATATGGCCCAATAGGCCCAATCACATT
Found at i:22525817 original size:16 final size:16
Alignment explanation
Indices: 22525796--22525826 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22525786 CAAATATGGG
22525796 CATGACATTCTGCATA
1 CATGACATTCTGCATA
22525812 CATGACATTCTGCAT
1 CATGACATTCTGCAT
22525827 GGGATATGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (16 bp):
CATGACATTCTGCATA
Found at i:22525892 original size:25 final size:25
Alignment explanation
Indices: 22525858--22525927 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
22525848 AGGAAGTGCT
22525858 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACCG
*
22525883 AAAAGGGCTCTGCCCCAGTTTATCG
1 AAAAGGGCTCTGCCCCAGTTTACCG
* * *
22525908 GAAAGGGCTTTGTCCCAGTT
1 AAAAGGGCTCTGCCCCAGTT
22525928 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACCG
Found at i:22526133 original size:42 final size:42
Alignment explanation
Indices: 22526074--22526165 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
22526064 TAGTCTCCCC
* **
22526074 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTTCATGTGATATTG
22526116 AAATGGGCTTGCATACATCCATTGACATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTTCATGTGATATTG
22526158 AAATGGGC
1 AAATGGGC
22526166 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTTCATGTGATATTG
Found at i:22526273 original size:29 final size:30
Alignment explanation
Indices: 22526189--22526297 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 30
22526179 CGTTTACAAT
* *
22526189 AAAGGCTTCGGCCCAGTGATATGATT-TATGA
1 AAAGGCTTCGGCCCAGT-ATATG-TTAAACGA
* *
22526220 AAAGGCTTTGGCCCAGTA-ACCGTTAAACG-
1 AAAGGCTTCGGCCCAGTATA-TGTTAAACGA
*
22526249 AAAGGCTTCGGCCCAGTATATGTTAAGACTA
1 AAAGGCTTCGGCCCAGTATATGTTAA-ACGA
*
22526280 AATAGGGCTTTGGCCCAG
1 AA-A-GGCTTCGGCCCAG
22526298 ATTGTACTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
29 25 0.40
30 7 0.11
31 18 0.29
32 1 0.02
33 12 0.19
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGTTAAACGA
Found at i:22529022 original size:24 final size:25
Alignment explanation
Indices: 22528954--22529014 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
22528944 AGGAAGTACT
22528954 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
22528979 AAAAGGGCTCTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
22529003 GAAAGGGCTTTG
1 AAAAGGGCTTTG
22529015 TCCTAGTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:22529229 original size:42 final size:42
Alignment explanation
Indices: 22529170--22529261 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
22529160 TAGTCTCCCC
* **
22529170 AAATGGGCTTGCATACATTCATTGGTATTTAATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTTAATGTGATATTG
*
22529212 AAATGGGCTTGCATACATCCATTGACATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTTAATGTGATATTG
22529254 AAATGGGC
1 AAATGGGC
22529262 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTTAATGTGATATTG
Found at i:22529320 original size:31 final size:31
Alignment explanation
Indices: 22529285--22529363 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
22529275 CATTTACAGT
* *
22529285 AAAGGCTTCGACCTAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATAA
*
22529316 AAAGGCTTCGGCCCAGTGATATGATTTATAA
1 AAAGGCTTCGACCCAGTGATATGATTTATAA
*
22529347 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGACCCAGT
22529364 AACTGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTTATAA
Found at i:22531069 original size:21 final size:21
Alignment explanation
Indices: 22531045--22531086 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
22531035 CGGCACAAGA
*
22531045 AAAGAAAGTAACGCGAAGGGT
1 AAAGAAAGTAAAGCGAAGGGT
22531066 AAAGAAAGTAAAGCGAAGGGT
1 AAAGAAAGTAAAGCGAAGGGT
22531087 TTTTGGCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (21 bp):
AAAGAAAGTAAAGCGAAGGGT
Found at i:22545635 original size:48 final size:43
Alignment explanation
Indices: 22545546--22545669 Score: 126
Period size: 48 Copynumber: 2.8 Consensus size: 43
22545536 TGGGATTACT
* * * *
22545546 TATCGATGCCATATCTCAGATATGGTCTTATA-CGAAGCCTCA
1 TATCGATGCCATGTCCCAGACATGGTCTTATATGGAAGCCTCA
*
22545588 TACTGGTGCCGATGCCATGTCCCAGACATGGTCTTATATGGGA-CCTCA
1 TA----T--CGATGCCATGTCCCAGACATGGTCTTATATGGAAGCCTCA
*
22545636 TATCGATGCCATGTCCCAGACATGGTCGTATATG
1 TATCGATGCCATGTCCCAGACATGGTCTTATATG
22545670 AAATCACTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
42 32 0.46
44 1 0.01
46 1 0.01
48 33 0.48
49 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (43 bp):
TATCGATGCCATGTCCCAGACATGGTCTTATATGGAAGCCTCA
Found at i:22547997 original size:90 final size:95
Alignment explanation
Indices: 22547881--22548102 Score: 267
Period size: 90 Copynumber: 2.4 Consensus size: 95
22547871 TGAGACCAGC
* * *
22547881 GCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGAT-C-TAAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATACGAAAGCCAGTGTAAGACATGT
22547944 CTAGGACATGCATCA-ACTACGA-GATG-T-
66 CTAGGACATGCATCAGACT-CGATGATGATA
* * * *
22547971 GCTAGTGTAAGACATGTCTGGGACATGCATCTGCATGGATATACGAAAGCTAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATACGAAAGCCAGTGTAAGACATGT
* *
22548036 CTGGGACATGCATCAGCCTCGATGATGATA
66 CTAGGACATGCATCAGACTCGATGATGATA
* * *
22548066 TCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
22548103 ACTTATCCCA
Statistics
Matches: 111, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
90 37 0.33
91 1 0.01
92 35 0.32
93 6 0.05
94 1 0.01
95 10 0.09
96 14 0.13
97 7 0.06
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATACGAAAGCCAGTGTAAGACATGT
CTAGGACATGCATCAGACTCGATGATGATA
Found at i:22548033 original size:48 final size:47
Alignment explanation
Indices: 22547786--22548093 Score: 215
Period size: 48 Copynumber: 6.6 Consensus size: 47
22547776 CATTCGTGTG
* * * *
22547786 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCA-C-ATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGATGATGAA
* * * * ** *
22547832 AGCCAGTATAAGACCATAG-CTGGGATATGGTATCAGCAAT-GA-GACCAG
1 AGCTAGTGTAAGA-CAT-GTCTGGGACAT-GCATCAGC-ATCGATGATGAA
* * * * **
22547880 CGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA-GATCTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGATGATGAA
* * *
22547926 AGCCAGTGTAAGACATGTCTAGGACATGCATCAAC-TACGA-GATG--
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-CGATGATGAA
* * *
22547970 TGCTAGTGTAAGACATGTCTGGGACATGCATCTGCATGGAT-ATACGAA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGATGAT--GAA
* *
22548018 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGATGATGAA
* *
22548065 ATCCAGTGTAAGACCATGTCTGGGACATG
1 AGCTAGTGTAAGA-CATGTCTGGGACATG
22548094 GCATTGGCAA
Statistics
Matches: 207, Mismatches: 38, Indels: 32
0.75 0.14 0.12
Matches are distributed among these distances:
44 34 0.16
45 3 0.01
46 60 0.29
47 35 0.17
48 72 0.35
49 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGATGATGAA
Found at i:22549518 original size:47 final size:46
Alignment explanation
Indices: 22549435--22549530 Score: 149
Period size: 47 Copynumber: 2.1 Consensus size: 46
22549425 CCTAGCCTCT
*
22549435 TTTAGTAACTGGGGAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
*
22549481 TTTAATAACTGGGGCATAAGCCC-TTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGG-A-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
22549528 TTT
1 TTT
22549531 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 13 0.28
47 27 0.59
48 6 0.13
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (46 bp):
TTTAATAACTGGGGAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:22549532 original size:24 final size:24
Alignment explanation
Indices: 22549414--22549531 Score: 154
Period size: 23 Copynumber: 5.0 Consensus size: 24
22549404 GCTTTATCAT
*
22549414 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
22549439 GTAACTGGGG-A-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
22549462 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
22549485 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
22549509 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22549532 GCACTTCCTC
Statistics
Matches: 84, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
22 1 0.01
23 41 0.49
24 29 0.35
25 13 0.15
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22549610 original size:20 final size:20
Alignment explanation
Indices: 22549585--22549646 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
22549575 GAACATCTCG
22549585 TGTGCATATCATACAGATCA
1 TGTGCATATCATACAGATCA
*
22549605 TGTGCATAT-AAACATG-TCA
1 TGTGCATATCATACA-GATCA
*
22549624 TGTGCATATCATACATATCA
1 TGTGCATATCATACAGATCA
22549644 TGT
1 TGT
22549647 TTATCAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 16 0.44
20 20 0.56
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (20 bp):
TGTGCATATCATACAGATCA
Found at i:22549711 original size:25 final size:25
Alignment explanation
Indices: 22549683--22549730 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
22549673 ATATATAAAC
* *
22549683 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
22549708 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
22549731 CGTATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:22557580 original size:24 final size:24
Alignment explanation
Indices: 22557476--22557594 Score: 131
Period size: 23 Copynumber: 5.0 Consensus size: 24
22557466 GCTTTATCAT
*
22557476 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
22557500 AGTAACTGGGG--TAAACCCTTTTTA
1 A-TAACTGGGGCATAAGCCC-TTTTG
*
22557524 ATAACTGGGGCATAAGCCCTTTAG
1 ATAACTGGGGCATAAGCCCTTTTG
22557548 -TAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22557571 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
22557595 CACTTCCTCC
Statistics
Matches: 83, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
22 2 0.02
23 38 0.46
24 30 0.36
25 13 0.16
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:22557584 original size:47 final size:46
Alignment explanation
Indices: 22557497--22557592 Score: 149
Period size: 47 Copynumber: 2.1 Consensus size: 46
22557487 CCTAGCCTCT
22557497 TTTAGTAACTGGGGTAAACCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAGTAACTGGGGTAAACCCTTTTTAATAACTGGGGCATAAGCCC
* *
22557543 TTTAGTAACTGGGGCATAAGCCC-TTTTGATAACTGGGGCATAAGCCC
1 TTTAGTAACTGGGG--TAAACCCTTTTTAATAACTGGGGCATAAGCCC
22557590 TTT
1 TTT
22557593 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 14 0.30
47 26 0.57
48 6 0.13
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (46 bp):
TTTAGTAACTGGGGTAAACCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:22557670 original size:20 final size:20
Alignment explanation
Indices: 22557647--22557709 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
22557637 GAACATCTCG
22557647 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
22557667 TGTGCATATAATACATGTCA
1 TGTGCATATCATACATATCA
22557687 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
22557707 TGT
1 TGT
22557710 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:22560237 original size:21 final size:21
Alignment explanation
Indices: 22560189--22560242 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
22560179 CGGGTAGGGG
* *
22560189 ACACGGGCATGTTTCCCTTCC
1 ACACGGGCGTGTTACCCTTCC
22560210 ACACGGGCGTGTTACCCTTCC
1 ACACGGGCGTGTTACCCTTCC
**
22560231 ATGCGGGCGTGT
1 ACACGGGCGTGT
22560243 GCCTTGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (21 bp):
ACACGGGCGTGTTACCCTTCC
Found at i:22568905 original size:46 final size:46
Alignment explanation
Indices: 22568843--22569061 Score: 199
Period size: 46 Copynumber: 4.7 Consensus size: 46
22568833 CGTGTGAGCT
* * *
22568843 AGTATAAGGCATGTCTGGGACATGTATCGGCCTCAAAATGTAAGCC
1 AGTATAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGCC
* * **
22568889 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCC
1 AGTATAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCC
* * * * * *** *
22568935 AGTATAAGACCATATCTGGGATATAGCATCAGCAAT-GAGATGCGCGCT
1 AGTATAAGA-CATGTCTGGGACAT-GCATCGGC-CTCAAGATGTAAGCC
* *
22568983 AGTATAAGACATGTCTGGTACATGCATCGGCCTCGAGATGTAAGCC
1 AGTATAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGCC
*
22569029 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTATAAGA-CATGTCTGGGACAT-GCATCGGC
22569062 AACTTATCCC
Statistics
Matches: 136, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.01
46 69 0.51
47 36 0.26
48 29 0.21
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTATAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGCC
Found at i:22569008 original size:94 final size:94
Alignment explanation
Indices: 22568893--22569063 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 94
22568883 TAAGCCAGTG
*
22568893 TAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCCAGTATAAGACCATATCTGGGA
1 TAAGACATGTCTGGGACATGCATCGGCCACGA-GATGTA-AGCCAGTATAAGACCATATCTGGGA
*
22568956 TATAGCATCAGCAATGAGATGCGCGCTAGTA
64 CATAGCATCAGCAATGAGATGCGCGCTAGTA
* * * *
22568987 TAAGACATGTCTGGTACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGCCACGAGATGTAAGCCAGTATAAGACCATATCTGGGACA
* *
22569052 TGGCATCGGCAA
66 TAGCATCAGCAA
22569064 CTTATCCCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
94 65 0.97
95 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (94 bp):
TAAGACATGTCTGGGACATGCATCGGCCACGAGATGTAAGCCAGTATAAGACCATATCTGGGACA
TAGCATCAGCAATGAGATGCGCGCTAGTA
Found at i:22571397 original size:13 final size:13
Alignment explanation
Indices: 22571379--22571403 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22571369 AGCCCGTGTG
22571379 AGGGACACGGGCC
1 AGGGACACGGGCC
22571392 AGGGACACGGGC
1 AGGGACACGGGC
22571404 GTGCGTCCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:22574618 original size:28 final size:28
Alignment explanation
Indices: 22574581--22574645 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
22574571 AAGTCTACAT
* *
22574581 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATCGCCCACTAGGCCCAATC
* * * *
22574609 TCTTTCATATCGCCCATTAGGGCCAATC
1 ACATTCATATCGCCCACTAGGCCCAATC
22574637 ACATTCATA
1 ACATTCATA
22574646 GTCATGGAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATCGCCCACTAGGCCCAATC
Found at i:22575171 original size:20 final size:21
Alignment explanation
Indices: 22575143--22575181 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
22575133 ACTAAACAAA
*
22575143 AAGTGACTC-AAAATCATCTT
1 AAGTCACTCTAAAATCATCTT
*
22575163 AAGTCACTCTTAAATCATC
1 AAGTCACTCTAAAATCATC
22575182 CATGACCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (21 bp):
AAGTCACTCTAAAATCATCTT
Found at i:22577430 original size:43 final size:44
Alignment explanation
Indices: 22577381--22577590 Score: 259
Period size: 43 Copynumber: 4.9 Consensus size: 44
22577371 GATTACCGAG
* * *
22577381 ATGTGATTACATGTAAGACTATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * *
22577425 -TGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* *
22577467 ATATGATTTCATGTAAGACCATGTCTAGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * *
22577510 ATATGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * *
22577553 ATGTGATAACATGTAAGACCATATCTAGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCAT
22577591 TGTACGAGCT
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
42 7 0.05
43 141 0.95
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
Found at i:22580731 original size:15 final size:15
Alignment explanation
Indices: 22580711--22580788 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
22580701 AGAAAACTGA
22580711 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
**
22580726 ATAAAGAAA-CCCGG
1 ATAAAGAAATCCAAG
22580740 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
22580755 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
22580771 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
22580786 ATA
1 ATA
22580789 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 3 0.06
15 46 0.88
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22580745 original size:30 final size:31
Alignment explanation
Indices: 22580709--22580788 Score: 103
Period size: 30 Copynumber: 2.6 Consensus size: 31
22580699 CAAGAAAACT
*
22580709 GAATAAAGAAATCCAAGATAAAGA-AACCCG
1 GAATAAAGAAATCCAAGATAAAGAGAACCAG
*
22580739 GAATAAAGAAATCC-AGAATAAAGAGATCCAG
1 GAATAAAGAAATCCAAG-ATAAAGAGAACCAG
*
22580770 G-ATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
22580789 TGATACTATG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
29 2 0.05
30 35 0.80
31 7 0.16
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (31 bp):
GAATAAAGAAATCCAAGATAAAGAGAACCAG
Found at i:22582711 original size:31 final size:31
Alignment explanation
Indices: 22582673--22582736 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
22582663 CCTTTTCATA
22582673 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
22582704 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
22582735 TT
1 TT
22582737 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:22582979 original size:24 final size:24
Alignment explanation
Indices: 22582928--22583046 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
22582918 ACTTTATCAT
*
22582928 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
22582953 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
22582977 ATAACTAGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
22583000 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
22583024 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22583047 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.26
24 51 0.60
25 12 0.14
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22583005 original size:47 final size:48
Alignment explanation
Indices: 22582942--22583046 Score: 158
Period size: 47 Copynumber: 2.2 Consensus size: 48
22582932 CTGGAGGCCT
22582942 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
* ** *
22582991 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
22583038 AGCCCTTTT
1 AGCCCTTTT
22583047 TCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 43 0.83
48 5 0.10
49 4 0.08
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
Found at i:22583122 original size:20 final size:20
Alignment explanation
Indices: 22583097--22583156 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
22583087 TATGATTACC
22583097 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
22583117 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
22583137 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
22583157 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:22583127 original size:11 final size:11
Alignment explanation
Indices: 22583097--22583151 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
22583087 TATGATTACC
22583097 TCATGTGCATA
1 TCATGTGCATA
*
22583108 TCA--TACATA
1 TCATGTGCATA
22583117 TCATGTGCATA
1 TCATGTGCATA
* *
22583128 TCA--TACATT
1 TCATGTGCATA
22583137 TCATGTGCATA
1 TCATGTGCATA
22583148 TCAT
1 TCAT
22583152 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:22585692 original size:38 final size:35
Alignment explanation
Indices: 22585633--22585750 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
22585623 TCAATCATGC
*
22585633 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
22585672 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
22585703 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
22585734 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
22585751 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:22585694 original size:31 final size:31
Alignment explanation
Indices: 22585656--22585750 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
22585646 CCTTTTCATA
*
22585656 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
22585687 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
22585718 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
22585749 TT
1 TT
22585751 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:22585992 original size:24 final size:24
Alignment explanation
Indices: 22585941--22586059 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
22585931 GCTTTATCAT
*
22585941 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
22585966 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
22585990 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
22586013 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
22586037 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22586060 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22586020 original size:47 final size:48
Alignment explanation
Indices: 22585941--22586059 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
22585931 GCTTTATCAT
*
22585941 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
22585990 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
22586037 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22586060 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:22586135 original size:20 final size:20
Alignment explanation
Indices: 22586110--22586169 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
22586100 TATGATTACC
22586110 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
22586130 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
22586150 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
22586170 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:22586140 original size:11 final size:11
Alignment explanation
Indices: 22586110--22586164 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
22586100 TATGATTACC
22586110 TCATGTGCATA
1 TCATGTGCATA
*
22586121 TCA--TACATA
1 TCATGTGCATA
22586130 TCATGTGCATA
1 TCATGTGCATA
* *
22586141 TCA--TACATT
1 TCATGTGCATA
22586150 TCATGTGCATA
1 TCATGTGCATA
22586161 TCAT
1 TCAT
22586165 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:22586244 original size:25 final size:25
Alignment explanation
Indices: 22586212--22586259 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22586202 ATACATAAAC
* * *
22586212 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
22586237 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
22586260 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:22592582 original size:12 final size:12
Alignment explanation
Indices: 22592565--22592595 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
22592555 TATGTTATGG
*
22592565 CACACGGCTTAC
1 CACACGGCCTAC
22592577 CACACGGCCTAC
1 CACACGGCCTAC
22592589 CACACGG
1 CACACGG
22592596 TCGTGTGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.45, G:0.19, T:0.10
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:22609438 original size:40 final size:40
Alignment explanation
Indices: 22609260--22609445 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
22609250 TCGAATGATG
* * *
22609260 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
22609300 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22609340 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * **
22609380 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGCAACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
22609421 T-CGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22609446 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 11 0.09
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22617095 original size:40 final size:40
Alignment explanation
Indices: 22617038--22617223 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
22617028 TCGAATGATG
* * * *
22617038 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
22617078 TCCGGACTAAGAT-CCGAAAGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22617118 TCCGGACCAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** **
22617158 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCAACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
22617199 T-CGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
22617224 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.91
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22626733 original size:29 final size:28
Alignment explanation
Indices: 22626677--22626734 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
22626667 GTGATAATGA
*
22626677 ATATAAGGTGATTTGAGCCTAACGGGCC
1 ATATAAGGTGATTTGAGCCTAACAGGCC
*
22626705 ATATAAAGGTGATTT-AGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGA-GCCTAACAGGCC
22626734 A
1 A
22626735 AATGTATATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (28 bp):
ATATAAGGTGATTTGAGCCTAACAGGCC
Found at i:22626800 original size:29 final size:29
Alignment explanation
Indices: 22626684--22626800 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
22626674 TGAATATAAG
* * * * *
22626684 GTGATTTGAGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * * * *
22626713 GTGATTTAGGCCTAATAGGCCAAATGTAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * *
22626742 ATGAATTGGGCCTGATGGGCCAGATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
22626771 GTGAATTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
22626800 G
1 G
22626801 AGGTGGGCCA
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:22632744 original size:48 final size:48
Alignment explanation
Indices: 22632637--22632785 Score: 201
Period size: 48 Copynumber: 3.1 Consensus size: 48
22632627 CACATGGTAG
* * * *
22632637 GATGCCAATGCCATATCCCGAATATGGTCTTAGAT-GGATCACATATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTAGATGGGATCACAGATC
*** *
22632684 GATGCCAATGCCATGTCCCAAACATGGTCTTAGATGGGATTGTAGGTC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTAGATGGGATCACAGATC
* *
22632732 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTAGATGGGATCACAGATC
22632780 GATGCC
1 GATGCC
22632786 GATAGCCTAG
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 32 0.37
48 55 0.63
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAAACATGGTCTTAGATGGGATCACAGATC
Found at i:22637338 original size:9 final size:9
Alignment explanation
Indices: 22637326--22637382 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
22637316 TTTGATAAAC
22637326 ATGATATGT
1 ATGATATGT
*
22637335 ATGATATGCAC
1 ATGATATG--T
*
22637346 ATGACATGT
1 ATGATATGT
*
22637355 ATGATATGCAC
1 ATGATATG--T
22637366 ATGATATGT
1 ATGATATGT
22637375 ATGATATG
1 ATGATATG
22637383 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:22637349 original size:20 final size:20
Alignment explanation
Indices: 22637324--22637394 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
22637314 ATTTTGATAA
22637324 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22637344 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
22637364 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22637384 ACATGAGATGT
1 ACATGATATGT
22637395 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22637371 original size:11 final size:11
Alignment explanation
Indices: 22637335--22637389 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
22637325 CATGATATGT
22637335 ATGATATGCAC
1 ATGATATGCAC
* *
22637346 ATGACATG--T
1 ATGATATGCAC
22637355 ATGATATGCAC
1 ATGATATGCAC
*
22637366 ATGATATG--T
1 ATGATATGCAC
22637375 ATGATATGCAC
1 ATGATATGCAC
22637386 ATGA
1 ATGA
22637390 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22637496 original size:24 final size:24
Alignment explanation
Indices: 22637439--22637568 Score: 208
Period size: 24 Copynumber: 5.4 Consensus size: 24
22637429 GGAGGAAGTG
22637439 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
22637463 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
22637486 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
22637510 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
22637534 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
22637558 TAAAAGAGGCT
1 CAAAAG-GGCT
22637569 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 22 0.22
24 74 0.74
25 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:22646309 original size:53 final size:53
Alignment explanation
Indices: 22646127--22646329 Score: 199
Period size: 53 Copynumber: 3.8 Consensus size: 53
22646117 ACAAGGGTTT
* * * * * * *
22646127 AAGGATACCAAGTAAGACCATGACAAGGCATGCCATTGGTAAGTTTTACAAGGC
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAA-TTTCATAAGGC
* * * * ** * *
22646181 ATGGAAATCACGTAAGACCATGTCAAGACATGGCATTTATAAACTACTATAAGGC
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AATTTC-ATAAGGC
* * * * *
22646236 AAAGATCCCATGTAAGACCATGCCAAGACATGGCAATGGTGATTTCATAAGGC
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAATTTCATAAGGC
22646289 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTA
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTA
22646330 TGTTTAAAAA
Statistics
Matches: 116, Mismatches: 31, Indels: 5
0.76 0.20 0.03
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 38 0.33
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAATTTCATAAGGC
Found at i:22651201 original size:80 final size:80
Alignment explanation
Indices: 22651117--22651265 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
22651107 TATGGTAACC
* * * *
22651117 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
22651181 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
22651197 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
22651262 CCGG
66 CCGG
22651266 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:22651207 original size:40 final size:38
Alignment explanation
Indices: 22651158--22651265 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
22651148 ATCACGATTT
*
22651158 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
22651198 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
22651238 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
22651266 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:22659303 original size:80 final size:80
Alignment explanation
Indices: 22659219--22659367 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
22659209 TATGGTAACC
* * * *
22659219 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
22659283 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
22659299 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
22659364 CCGG
66 CCGG
22659368 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:22659309 original size:40 final size:38
Alignment explanation
Indices: 22659260--22659367 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
22659250 ATCACGATTT
*
22659260 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
22659300 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
22659340 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
22659368 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:22668910 original size:29 final size:28
Alignment explanation
Indices: 22668824--22668924 Score: 105
Period size: 29 Copynumber: 3.6 Consensus size: 28
22668814 TACTCAATCA
* *
22668824 CGCACACTTAGTGCCAT-GATTCAAGCC
1 CGCACACTTAGTGCCATACATTCAAGCT
* * * *
22668851 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
22668880 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
22668909 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
22668925 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 16 0.27
28 2 0.03
29 41 0.69
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:22676868 original size:29 final size:28
Alignment explanation
Indices: 22676782--22676882 Score: 105
Period size: 29 Copynumber: 3.6 Consensus size: 28
22676772 TACTCAATCA
* *
22676782 CGCACACTTAGTGCCAT-GATTCAAGCC
1 CGCACACTTAGTGCCATACATTCAAGCT
* * * *
22676809 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
22676838 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
22676867 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
22676883 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 16 0.27
28 2 0.03
29 41 0.69
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:22683476 original size:29 final size:29
Alignment explanation
Indices: 22683454--22683522 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
22683444 CACCAACTCA
* *
22683454 GGTCCAAGAATCTGTCGTTCACCCAACTT
1 GGTCCAACAACCTGTCGTTCACCCAACTT
22683483 GGTCCAACAACCTGTCGTTCACCCAACTT
1 GGTCCAACAACCTGTCGTTCACCCAACTT
22683512 GGTCCAACAAC
1 GGTCCAACAAC
22683523 TAGGTGTACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (29 bp):
GGTCCAACAACCTGTCGTTCACCCAACTT
Found at i:22684946 original size:29 final size:29
Alignment explanation
Indices: 22684907--22684981 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
22684897 GGTTGAGAGA
* *
22684907 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
22684936 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
22684965 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
22684982 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:22692089 original size:29 final size:29
Alignment explanation
Indices: 22692050--22692124 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
22692040 GGTTGAGAGA
* *
22692050 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
22692079 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
22692108 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
22692125 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:22692165 original size:2 final size:2
Alignment explanation
Indices: 22692160--22692186 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22692150 GCGAACCCAC
22692160 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22692187 TTTCTATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22702421 original size:21 final size:21
Alignment explanation
Indices: 22702397--22702466 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
22702387 CGATCTGAAC
22702397 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* **
22702418 TCA-TGATATATGTGGCATCTGAAC
1 TCATTGA-GT-TGTGG--TCTGAGT
*
22702442 TCATTGAGTCGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
22702463 TCAT
1 TCAT
22702467 GATATATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.35
22 5 0.14
23 4 0.11
24 9 0.24
25 3 0.08
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:22702439 original size:24 final size:22
Alignment explanation
Indices: 22702406--22702476 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 22
22702396 CTCATTGAGT
22702406 TGTGGTCTGAGTTCATGATATA
1 TGTGGTCTGAGTTCATGATATA
** *
22702428 TGTGGCATCTGAACTCATTGA-GT-
1 TGTGG--TCTGAGTTCA-TGATATA
*
22702451 CGTGGTCTGAGTTCATGATATA
1 TGTGGTCTGAGTTCATGATATA
22702473 TGTG
1 TGTG
22702477 ACACATGTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.08
21 9 0.25
22 8 0.22
23 4 0.11
24 9 0.25
25 3 0.08
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (22 bp):
TGTGGTCTGAGTTCATGATATA
Found at i:22702456 original size:45 final size:45
Alignment explanation
Indices: 22702389--22702476 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
22702379 GAATTATGCG
*
22702389 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGGC
1 ATCTGAACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGGC
22702434 ATCTGAACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTG
1 ATCTGAACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTG
22702477 ACACATGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGGC
Found at i:22709468 original size:21 final size:21
Alignment explanation
Indices: 22709444--22709513 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
22709434 CGATCTGAAC
22709444 TCATTAAGTTGTGGTCTGAGT
1 TCATTAAGTTGTGGTCTGAGT
* * **
22709465 TCATGATA-TATGTGGCATCTAAAC
1 TCATTA-AGT-TGTGG--TCTGAGT
*
22709489 TCATTGAGTTGTGGTCTGAGT
1 TCATTAAGTTGTGGTCTGAGT
22709510 TCAT
1 TCAT
22709514 GATATATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
21 14 0.40
22 6 0.17
23 6 0.17
24 9 0.26
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (21 bp):
TCATTAAGTTGTGGTCTGAGT
Found at i:22709505 original size:45 final size:45
Alignment explanation
Indices: 22709436--22709523 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
22709426 GAACTATGCG
*
22709436 ATCTGAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGGC
1 ATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGGC
*
22709481 ATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTG
1 ATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTG
22709524 ACACATGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (45 bp):
ATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGGC
Found at i:22711522 original size:14 final size:14
Alignment explanation
Indices: 22711503--22711533 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
22711493 TGTATGCTTG
22711503 TTTCTTCTATTTTA
1 TTTCTTCTATTTTA
22711517 TTTCTTCTATTTTA
1 TTTCTTCTATTTTA
22711531 TTT
1 TTT
22711534 ATTATCTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCTTCTATTTTA
Found at i:22715512 original size:39 final size:39
Alignment explanation
Indices: 22715458--22715623 Score: 199
Period size: 39 Copynumber: 4.3 Consensus size: 39
22715448 GTATGAGATT
* * *
22715458 AAAAATAT-CATGACATAAGGTCCGCAGGCTATATGCTGG
1 AAAAATATCCA-GACATGAGATCCGCAGGCTATATGCTAG
22715497 AAAAATATCCAGACATGAGATCCGCAGGCTATATGCTAG
1 AAAAATATCCAGACATGAGATCCGCAGGCTATATGCTAG
* **
22715536 AAATATATCTGGACATGAGATCCGCAGGCTATATGCTAG
1 AAAAATATCCAGACATGAGATCCGCAGGCTATATGCTAG
* ** * * * *
22715575 AAACATATCTGGACTTGAGGTCCGCAGGCTACATGCTGG
1 AAAAATATCCAGACATGAGATCCGCAGGCTATATGCTAG
22715614 AAAAATATCC
1 AAAAATATCC
22715624 GGGTTAAAGA
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 111 0.98
40 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (39 bp):
AAAAATATCCAGACATGAGATCCGCAGGCTATATGCTAG
Found at i:22722915 original size:46 final size:46
Alignment explanation
Indices: 22722865--22723040 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
22722855 TGGTTGAGCA
22722865 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22722911 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22722956 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22723004 CCCGAGCTCGTTCAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22723041 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22723021 original size:93 final size:93
Alignment explanation
Indices: 22722862--22723033 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
22722852 GGATGGTTGA
* * *
22722862 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
22722927 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22722955 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
22723020 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22723034 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22725882 original size:40 final size:40
Alignment explanation
Indices: 22725808--22725953 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
22725798 CCGCACCAAG
* * * * * *
22725808 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
22725848 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
22725888 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
22725928 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
22725954 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:22725968 original size:40 final size:40
Alignment explanation
Indices: 22725840--22725991 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
22725830 ATCACGATTT
* * * **
22725840 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
22725880 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
22725920 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
22725960 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
22725992 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:22732061 original size:81 final size:79
Alignment explanation
Indices: 22731928--22732088 Score: 304
Period size: 81 Copynumber: 2.0 Consensus size: 79
22731918 TAGAGAAATT
22731928 GTTAGATTACACGAATACCATGTCGATTATTTCAGATAGAGATCCAAGGTTTACCTCGCGGTTTT
1 GTTAGATTACACGAATACCATGTCGATTATTTCAGATAGAGATCCAAGGTTTACCTCGCGGTTTT
22731993 GGCAAATTTTGCAA
66 GGCAAATTTTGCAA
22732007 GTTAGATTACACGGAATACCATTGTCGATTATTTCAGATAGAGATCCAAGGTTTACCTCGCGGTT
1 GTTAGATTACAC-GAATACCA-TGTCGATTATTTCAGATAGAGATCCAAGGTTTACCTCGCGGTT
22732072 TTGGCAAATTTTGCAA
64 TTGGCAAATTTTGCAA
22732088 G
1 G
22732089 ACGCGTTAGG
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
79 12 0.15
80 8 0.10
81 60 0.75
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (79 bp):
GTTAGATTACACGAATACCATGTCGATTATTTCAGATAGAGATCCAAGGTTTACCTCGCGGTTTT
GGCAAATTTTGCAA
Found at i:22734275 original size:46 final size:45
Alignment explanation
Indices: 22734225--22734392 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
22734215 TGGTTGAGCA
22734225 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
22734271 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
22734316 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
22734364 CCCGAGCTCGTTCAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
22734393 GCTTGTGGGC
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.53
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:22734381 original size:93 final size:93
Alignment explanation
Indices: 22734222--22734393 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
22734212 GGATGGTTGA
* * *
22734222 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
22734287 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
22734315 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
22734380 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22734394 CTTGTGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22737343 original size:39 final size:39
Alignment explanation
Indices: 22737300--22737467 Score: 221
Period size: 39 Copynumber: 4.3 Consensus size: 39
22737290 GTATGAGATT
* *
22737300 AAAAATATCCGGACATGAGGTCCGCAAGCTAGATGCTAG
1 AAAAATATCCGGACATGAGATCCGCAGGCTAGATGCTAG
* *
22737339 AAAAATATCCAGACATGAGATCCGCAGGCTATATGCTAG
1 AAAAATATCCGGACATGAGATCCGCAGGCTAGATGCTAG
* * *
22737378 AAATATATCCGGACATGAGATCCGCATGCTATATGCTAG
1 AAAAATATCCGGACATGAGATCCGCAGGCTAGATGCTAG
* * * *
22737417 AAATATATCCGGACTTGAGGTCCGCAGGCTACG-TGCTGG
1 AAAAATATCCGGACATGAGATCCGCAGGCTA-GATGCTAG
22737456 AAAAATATCCGG
1 AAAAATATCCGG
22737468 TTTAAAGACC
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (39 bp):
AAAAATATCCGGACATGAGATCCGCAGGCTAGATGCTAG
Done.