Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 89 of 427
Found at i:23333342 original size:30 final size:31
Alignment explanation
Indices: 23333308--23333382 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 31
23333298 GCTGTGTGGG
*
23333308 CCACACGGGCATGTGGGC-CACATAGGT-GAA
1 CCACATGGGCATGTGGGCTCACATAGGTAG-A
* * *
23333338 CCACATGGGC-GGTGGGCTCACATGGGTAGG
1 CCACATGGGCATGTGGGCTCACATAGGTAGA
23333368 CCACATGGGCATGTG
1 CCACATGGGCATGTG
23333383 AGCCTATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
29 6 0.16
30 27 0.73
31 4 0.11
ACGTcount: A:0.21, C:0.25, G:0.37, T:0.16
Consensus pattern (31 bp):
CCACATGGGCATGTGGGCTCACATAGGTAGA
Found at i:23336046 original size:45 final size:44
Alignment explanation
Indices: 23335983--23336072 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 44
23335973 CTTTTGCCTC
23335983 CATTTCATCTTTTTGGATATAAAATTTGTCTCAATATTATTTTT
1 CATTTCATCTTTTTGGATATAAAATTTGTCTCAATATTATTTTT
23336027 CATTTCATCATTTTTGGATATAAAATTTGTCTCAATATTATTTTT
1 CATTTCATC-TTTTTGGATATAAAATTTGTCTCAATATTATTTTT
23336072 C
1 C
23336073 TTCCCTTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 9 0.20
45 36 0.80
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (44 bp):
CATTTCATCTTTTTGGATATAAAATTTGTCTCAATATTATTTTT
Found at i:23339758 original size:26 final size:26
Alignment explanation
Indices: 23339729--23339810 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
23339719 TGATAAAAAT
*
23339729 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23339755 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23339781 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23339807 TGAT
1 TGAT
23339811 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23341443 original size:27 final size:26
Alignment explanation
Indices: 23341397--23341534 Score: 134
Period size: 27 Copynumber: 5.1 Consensus size: 26
23341387 AAGCGTCCTT
* *
23341397 GTGGCTATGCCATAATTATCTGATCTG
1 GTGGCTCTGCCA-CATTATCTGATCTG
* *
23341424 GTGGCTCTACCACATGTATCT-CTCCTG
1 GTGGCTCTGCCACAT-TATCTGAT-CTG
* *
23341451 GTGGCTATGCCACAATTATCTAATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
23341478 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* *
23341505 GTGGCTCTGCCACAATATTTGTATCTG
1 GTGGCTCTGCCACATTATCTG-ATCTG
23341532 GTG
1 GTG
23341535 ACTTCGTCAC
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
26 10 0.11
27 79 0.86
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:23341531 original size:54 final size:54
Alignment explanation
Indices: 23341392--23341534 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 54
23341382 GGAGGAAGCG
* * *
23341392 TCCTTGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTACCACATGTATCTC
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTC
* * *
23341446 TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTC
* * *
23341500 TTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
23341535 ACTTCGTCAC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.05
54 74 0.95
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTC
Found at i:23345375 original size:42 final size:42
Alignment explanation
Indices: 23345328--23345412 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
23345318 CTCAATTGGC
23345328 AGATAAAACTATAAGATTTCCTAGGGGTATTATTGAAGATGT
1 AGATAAAACTATAAGATTTCCTAGGGGTATTATTGAAGATGT
23345370 AGATAAAACTATAAGATTTCCTAGGGGTATTATTGAAGATGT
1 AGATAAAACTATAAGATTTCCTAGGGGTATTATTGAAGATGT
23345412 A
1 A
23345413 CTAGTGAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (42 bp):
AGATAAAACTATAAGATTTCCTAGGGGTATTATTGAAGATGT
Found at i:23348534 original size:6 final size:6
Alignment explanation
Indices: 23348523--23348561 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
23348513 TCCTCTTATC
23348523 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
23348562 CAAATTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:23352621 original size:50 final size:50
Alignment explanation
Indices: 23352509--23352734 Score: 251
Period size: 50 Copynumber: 4.5 Consensus size: 50
23352499 TCTGTACGCA
* * *
23352509 TAGTAGCCTGCACTTAGTATTACACATGCGACC-AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
* *
23352558 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
* * * * *
23352608 TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACTCAT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAAC-CATCTGA-TACACG
* * * * *
23352659 TAGTAGCCTGTACTTAGTACTACACATGCGACTTAA-TAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCA-TCTGATACACG
**
23352709 TAGTAGCCTATACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
23352735 CGTGTATTCA
Statistics
Matches: 152, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 32 0.21
50 80 0.53
51 40 0.26
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
Found at i:23352684 original size:101 final size:99
Alignment explanation
Indices: 23352509--23352738 Score: 266
Period size: 101 Copynumber: 2.3 Consensus size: 99
23352499 TCTGTACGCA
* * * *
23352509 TAGTAGCCTGCACTTAGTATTACACATGCGACCAACAATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTGGTACACATAGTAGCCTGCACTTA
* * *
23352574 GTACTACACATGTGACCTCACCA-TCTGATACACG
66 GTACTACACATGCGA-CTCAACAGTATGATACACG
* * * *
23352608 TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACTCAT-TGAGTACGCATAGTAGCCTGTAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAAC-AATCTG-GTACACATAGTAGCCTGCAC
* * *
23352672 TTAGTACTACACATGCGACTTAATAGTATGGTACACG
63 TTAGTACTACACATGCGACTCAACAGTATGATACACG
**
23352709 TAGTAGCCTATACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
23352739 TATTCACAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
99 28 0.25
100 10 0.09
101 73 0.66
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACTCAACAGTATGATACACG
Found at i:23360125 original size:51 final size:50
Alignment explanation
Indices: 23359998--23360179 Score: 208
Period size: 51 Copynumber: 3.6 Consensus size: 50
23359988 ATCTGGTATG
* * * * **
23359998 CATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAGTATGGTACA
* * *
23360047 CGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGA-AGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAGT-A-TG-GTACA
* *
23360098 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAGTATGGTACA
*
23360148 CGTAGTAGCCTGCACTTAGTACTACACACGTG
1 CATAGTAGCCTGCACTTAGTACTACACACGTG
23360180 TATTCACAAT
Statistics
Matches: 110, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
48 2 0.02
49 31 0.28
50 34 0.31
51 36 0.33
52 4 0.04
53 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAGTATGGTACA
Found at i:23360176 original size:101 final size:100
Alignment explanation
Indices: 23359997--23360179 Score: 321
Period size: 101 Copynumber: 1.8 Consensus size: 100
23359987 TATCTGGTAT
*
23359997 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAGTAGCCTGCAC
23360062 TTAGTACTACACACGTGATTGAAGTCATTGAGTAC
66 TTAGTACTACACACGTGATTGAAGTCATTGAGTAC
* * *
23360097 GCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATACGGTACACGTAGTAGCCTGCA
23360162 CTTAGTACTACACACGTG
65 CTTAGTACTACACACGTG
23360180 TATTCACAAT
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
100 35 0.45
101 43 0.55
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATTGAAGTCATTGAGTAC
Found at i:23361818 original size:34 final size:34
Alignment explanation
Indices: 23361780--23361848 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
23361770 AACCCTCATT
23361780 TGTAACCCATTAACCTATTATTGTTGAAATCCTC
1 TGTAACCCATTAACCTATTATTGTTGAAATCCTC
23361814 TGTAACCCATTAACCTATTATTGTTGAAATCCTC
1 TGTAACCCATTAACCTATTATTGTTGAAATCCTC
23361848 T
1 T
23361849 TACTTAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (34 bp):
TGTAACCCATTAACCTATTATTGTTGAAATCCTC
Found at i:23363898 original size:10 final size:10
Alignment explanation
Indices: 23363883--23363910 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
23363873 TCAAAATTCA
23363883 ACTAGTTATT
1 ACTAGTTATT
23363893 ACTAGTTATT
1 ACTAGTTATT
23363903 ACTAGTTA
1 ACTAGTTA
23363911 ATTGTCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (10 bp):
ACTAGTTATT
Found at i:23365071 original size:23 final size:23
Alignment explanation
Indices: 23365023--23365076 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
23365013 GTGCCATTAA
* * *
23365023 CACTTGCATCGTAGTGTCGCTTT
1 CACTTGCAACGTAGTGTCACTAT
23365046 CACTTGCAACGTAGT-TCCACTAT
1 CACTTGCAACGTAGTGT-CACTAT
23365069 CACTTGCA
1 CACTTGCA
23365077 CATATAGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (23 bp):
CACTTGCAACGTAGTGTCACTAT
Found at i:23370019 original size:37 final size:37
Alignment explanation
Indices: 23369969--23370118 Score: 237
Period size: 37 Copynumber: 4.1 Consensus size: 37
23369959 CTTTAGCTCA
* *
23369969 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
23370006 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* * *
23370043 GACATAATCTTCACACGTAGTCATCGGGTCTTACCTG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
23370080 GACATAATCTCCACATGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
23370117 GA
1 GA
23370119 ATATATTTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:23370331 original size:47 final size:47
Alignment explanation
Indices: 23370280--23370417 Score: 213
Period size: 47 Copynumber: 2.9 Consensus size: 47
23370270 TTCACACTAT
* * *
23370280 CCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* *
23370327 CCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
**
23370374 CCATTCGGCCTTATCACATATATGCACATTCACATTCATCACAT
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
23370418 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:23370343 original size:22 final size:22
Alignment explanation
Indices: 23370317--23370392 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
23370307 GTTCATATTC
23370317 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
23370339 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
23370363 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
23370386 ATCACAT
1 ATCACAT
23370393 ATATGCACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:23374494 original size:40 final size:40
Alignment explanation
Indices: 23374462--23374812 Score: 488
Period size: 40 Copynumber: 8.8 Consensus size: 40
23374452 CCAGCATGAT
* * * *
23374462 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * * *
23374502 TGCTCTTTGGGGTTTAGCACGGATATATGACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
23374542 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
23374581 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
23374621 TGCTCTTCGGGACTTAATCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
23374661 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
23374701 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
23374741 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
23374781 TGCTCTTCGGGATTTAGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
23374813 CTCAATTCTC
Statistics
Matches: 280, Mismatches: 30, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
39 35 0.12
40 245 0.88
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:23376140 original size:37 final size:37
Alignment explanation
Indices: 23376080--23376226 Score: 231
Period size: 37 Copynumber: 4.0 Consensus size: 37
23376070 TAGCTCAGAA
* * *
23376080 AAAATCTCCACGCGAAGTTATCGGGTCTTACCCGGAC
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
23376117 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
* * *
23376154 ATAATCTTCACATGTAGTCATCGGGTCTTACCCGGAC
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
23376191 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23376227 ATATATTTCC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:23376441 original size:47 final size:47
Alignment explanation
Indices: 23376390--23376527 Score: 213
Period size: 47 Copynumber: 2.9 Consensus size: 47
23376380 TTCACACTAT
* * *
23376390 CCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* *
23376437 CCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
**
23376484 CCATTCGGCCTTATCACATATATGCACATTCACATTCATCACAT
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
23376528 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:23376453 original size:22 final size:22
Alignment explanation
Indices: 23376427--23376502 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
23376417 GTTCATATTC
23376427 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
23376449 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
23376473 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
23376496 ATCACAT
1 ATCACAT
23376503 ATATGCACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:23380901 original size:41 final size:41
Alignment explanation
Indices: 23380811--23380901 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
23380801 TCCATGAAAT
* * *
23380811 GGTTG-AAAGGAAGCTATCCGAAAAGGATAACACTTGAAAA
1 GGTTGAAAAGAAAGCTATCCGAAAAGGATAACACATAAAAA
* * *
23380851 TGTTAAAAAGAAAGTTATCCGAAAAGGATAACACATAAAAA
1 GGTTGAAAAGAAAGCTATCCGAAAAGGATAACACATAAAAA
23380892 GGTTGAAAAG
1 GGTTGAAAAG
23380902 GATATATTCG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 3 0.07
41 39 0.93
ACGTcount: A:0.49, C:0.10, G:0.22, T:0.19
Consensus pattern (41 bp):
GGTTGAAAAGAAAGCTATCCGAAAAGGATAACACATAAAAA
Found at i:23380973 original size:41 final size:41
Alignment explanation
Indices: 23380825--23380974 Score: 144
Period size: 41 Copynumber: 3.7 Consensus size: 41
23380815 GAAAGGAAGC
** * * * *
23380825 TATCCGAAAAGGATAACACTTGAAAATG-TTAAAAAGAAAGT
1 TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATA-T
* * *
23380866 TATCCGAAAAGGATAACACATAAAAAGGTTGAAAAGGATA-
1 TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATAT
* * * *
23380906 TATTCGAAAATGATATCAAATGAAAAGGCTGGAAAGGATAT
1 TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATAT
23380947 TATCC-AGAAAGGATAACAAATGAAAAGG
1 TATCCGA-AAAGGATAACAAATGAAAAGG
23380975 GATGTGTTTA
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
40 34 0.38
41 48 0.53
42 8 0.09
ACGTcount: A:0.51, C:0.09, G:0.20, T:0.20
Consensus pattern (41 bp):
TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATAT
Found at i:23381567 original size:38 final size:38
Alignment explanation
Indices: 23381521--23381615 Score: 154
Period size: 38 Copynumber: 2.5 Consensus size: 38
23381511 TTTTATCCTA
23381521 GAAAAAAGAATTTAAAAAGAAGATAACCTTGAATTGTT
1 GAAAAAAGAATTTAAAAAGAAGATAACCTTGAATTGTT
* *
23381559 GAAAAAAGAATTTAAAAAGAAGATAATCTTGGATTGTT
1 GAAAAAAGAATTTAAAAAGAAGATAACCTTGAATTGTT
*
23381597 TAAAAAAGAATTTTAAAAA
1 GAAAAAAGAA-TTTAAAAA
23381616 AAAAGGTGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 45 0.85
39 8 0.15
ACGTcount: A:0.55, C:0.03, G:0.15, T:0.27
Consensus pattern (38 bp):
GAAAAAAGAATTTAAAAAGAAGATAACCTTGAATTGTT
Found at i:23389868 original size:45 final size:44
Alignment explanation
Indices: 23389804--23390009 Score: 220
Period size: 45 Copynumber: 4.6 Consensus size: 44
23389794 AGGCATTGGA
**
23389804 TCTTTCAAAAATGGTCTTATTCATTTCCTTCAT-GTTGCCATAGTG
1 TCTTTCAACTATGGTCTTATTCATTTCCTT-ATAG-TGCCATAGTG
* *
23389849 TCTTTCAACTAAGGTCTTATTCATTTCCCTTATAGTGTCATAGTG
1 TCTTTCAACTATGGTCTTATTCATTT-CCTTATAGTGCCATAGTG
* * *
23389894 TCTTTCAACTATGGTTTTATTCATTT-CTGGTATAGTGCCACAATG
1 TCTTTCAACTATGGTCTTATTCATTTCCT--TATAGTGCCATAGTG
* ** *
23389939 TCTTTCAACTATGGTTTTATTCATTT-CTGGTATAGTGTTACAGTG
1 TCTTTCAACTATGGTCTTATTCATTTCCT--TATAGTGCCATAGTG
*
23389984 TCTTTCCACTATGGTCTTATTCATTT
1 TCTTTCAACTATGGTCTTATTCATTT
23390010 TTTCAAGCAA
Statistics
Matches: 143, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
43 2 0.01
45 136 0.95
46 5 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (44 bp):
TCTTTCAACTATGGTCTTATTCATTTCCTTATAGTGCCATAGTG
Found at i:23391022 original size:3 final size:3
Alignment explanation
Indices: 23391014--23391071 Score: 66
Period size: 3 Copynumber: 19.3 Consensus size: 3
23391004 CAATAGATGT
* *
23391014 TTA TTA TTA TAA TTA TTAA TTA TTA TTG TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA
23391060 TTA TTA -TA TTA T
1 TTA TTA TTA TTA T
23391072 GGAATAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
2 3 0.06
3 41 0.85
4 4 0.08
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:23394768 original size:41 final size:41
Alignment explanation
Indices: 23394678--23394768 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
23394668 TCCATGAAAT
* * *
23394678 GGTTG-AAAGGAAGCTATCCGAAAAGGATAACACTTGAAAA
1 GGTTGAAAAGAAAGCTATCCGAAAAGGATAACACATAAAAA
* * *
23394718 TGTTAAAAAGAAAGTTATCCGAAAAGGATAACACATAAAAA
1 GGTTGAAAAGAAAGCTATCCGAAAAGGATAACACATAAAAA
23394759 GGTTGAAAAG
1 GGTTGAAAAG
23394769 GATATATTCG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 3 0.07
41 39 0.93
ACGTcount: A:0.49, C:0.10, G:0.22, T:0.19
Consensus pattern (41 bp):
GGTTGAAAAGAAAGCTATCCGAAAAGGATAACACATAAAAA
Found at i:23394840 original size:41 final size:41
Alignment explanation
Indices: 23394692--23394841 Score: 144
Period size: 41 Copynumber: 3.7 Consensus size: 41
23394682 GAAAGGAAGC
** * * * *
23394692 TATCCGAAAAGGATAACACTTGAAAATG-TTAAAAAGAAAGT
1 TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATA-T
* * *
23394733 TATCCGAAAAGGATAACACATAAAAAGGTTGAAAAGGATA-
1 TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATAT
* * * *
23394773 TATTCGAAAATGATATCAAATGAAAAGGCTGGAAAGGATAT
1 TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATAT
23394814 TATCC-AGAAAGGATAACAAATGAAAAGG
1 TATCCGA-AAAGGATAACAAATGAAAAGG
23394842 GATGTGTTTA
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
40 34 0.38
41 48 0.53
42 8 0.09
ACGTcount: A:0.51, C:0.09, G:0.20, T:0.20
Consensus pattern (41 bp):
TATCCGAAAAGGATAACAAATGAAAAGGCTGAAAAGGATAT
Found at i:23396950 original size:29 final size:29
Alignment explanation
Indices: 23396849--23396942 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
23396839 GTGACGAGAT
23396849 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
23396878 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
23396907 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
23396936 CGGCACT
1 TGGCACT
23396943 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:23396967 original size:58 final size:58
Alignment explanation
Indices: 23396845--23396979 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
23396835 TACGGTGACG
* *
23396845 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
23396902 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
23396960 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
23396980 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:23398499 original size:38 final size:39
Alignment explanation
Indices: 23398444--23398519 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 39
23398434 GGGTGTTACA
23398444 AAGATAACCTTGAATTGTTGAAAAAAGAA-TTTAAAAAG
1 AAGATAACCTTGAATTGTTGAAAAAAGAATTTTAAAAAG
* * *
23398482 AAGATAATCTTGGATTGTTTAAAAAAGAATTTTAAAAA
1 AAGATAACCTTGAATTGTTGAAAAAAGAATTTTAAAAA
23398520 AAAAGGAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 26 0.76
39 8 0.24
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.30
Consensus pattern (39 bp):
AAGATAACCTTGAATTGTTGAAAAAAGAATTTTAAAAAG
Found at i:23406770 original size:45 final size:44
Alignment explanation
Indices: 23406706--23406911 Score: 229
Period size: 45 Copynumber: 4.6 Consensus size: 44
23406696 AGGCATTGGA
**
23406706 TCTTTCAAAAATGGTCTTATTCATTTCCTTCAT-GTTGCCATAGTG
1 TCTTTCAACTATGGTCTTATTCATTTCCTT-ATAG-TGCCATAGTG
* *
23406751 TCTTTCAACTAAGGTCTTATTCATTTCCCTTATAGTGTCATAGTG
1 TCTTTCAACTATGGTCTTATTCATTT-CCTTATAGTGCCATAGTG
* * *
23406796 TCTTTCAACTATGGTTTTATTCATTT-CTGGTATAGTGCCACAATG
1 TCTTTCAACTATGGTCTTATTCATTTCCT--TATAGTGCCATAGTG
** *
23406841 TCTTTCAACTATGGTCTTATTCATTT-CTGGTATAGTGTTACAGTG
1 TCTTTCAACTATGGTCTTATTCATTTCCT--TATAGTGCCATAGTG
*
23406886 TCTTTCCACTATGGTCTTATTCATTT
1 TCTTTCAACTATGGTCTTATTCATTT
23406912 TTTCAAGCAA
Statistics
Matches: 143, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
43 2 0.01
45 136 0.95
46 5 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (44 bp):
TCTTTCAACTATGGTCTTATTCATTTCCTTATAGTGCCATAGTG
Found at i:23407924 original size:3 final size:3
Alignment explanation
Indices: 23407916--23407972 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
23407906 CAATAGATGT
* *
23407916 TTA TTA TTA -TA ATA TTAA TTA TTA TTG TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA
23407961 TTA TTA -TA TTA T
1 TTA TTA TTA TTA T
23407973 GGAATAAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
2 5 0.11
3 38 0.81
4 4 0.09
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23409446 original size:18 final size:18
Alignment explanation
Indices: 23409423--23409466 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
23409413 ATTATTGGAC
*
23409423 TGAATAACTGATTGTTAT
1 TGAATAACTAATTGTTAT
23409441 TGAATAACTAATTGTTAT
1 TGAATAACTAATTGTTAT
23409459 TGAATAAC
1 TGAATAAC
23409467 AATAAACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.41
Consensus pattern (18 bp):
TGAATAACTAATTGTTAT
Found at i:23415603 original size:114 final size:114
Alignment explanation
Indices: 23415403--23415677 Score: 390
Period size: 114 Copynumber: 2.4 Consensus size: 114
23415393 TCGAAATATG
* * * * *
23415403 ATATCTGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTCC
1 ATATCTAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCGCAAGCTCC
* * *
23415468 GTGCTGGTATTATATTCGGGTTAAATCCCGCAGGATTCGTGTTGGTAAT
66 GTGCTGGTAATATATCCGGGTTAAATCCCGCAGGATTCGTGATGGTAAT
* * *
23415517 ATATCTAGGTTAAATCCTGCAGGCTTCGTGCTAGTATTATATTCGGGTTAAATCCCGCAAGCTTC
1 ATATCTAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCGCAAGCTCC
* *
23415582 GTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGATGGTATT
66 GTGCTGGTAATATATCCGGGTTAAATCCCGCAGGATTCGTGATGGTAAT
* * *
23415631 ATATCCAGGTTAAATCCCGCAGGGC-TAGTACTGGTATTATATTCGGG
1 ATATCTAGGTTAAATCCCGCA-GGCTTCGTGCTGGTATTATATTCGGG
23415678 CCTTTGAGCC
Statistics
Matches: 142, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
114 139 0.98
115 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (114 bp):
ATATCTAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCGCAAGCTCC
GTGCTGGTAATATATCCGGGTTAAATCCCGCAGGATTCGTGATGGTAAT
Found at i:23415666 original size:38 final size:38
Alignment explanation
Indices: 23415403--23415677 Score: 354
Period size: 38 Copynumber: 7.2 Consensus size: 38
23415393 TCGAAATATG
* * *
23415403 ATATCTGGGTTAAATCCCGCAAGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
23415441 ATATCCGGGTTAAATCCCGCAGGCTCCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* * * *
23415479 ATATTCGGGTTAAATCCCGCAGGATTCGTGTTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
** * *
23415517 ATATCTAGGTTAAATCCTGCAGGCTTCGTGCTAGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* * *
23415555 ATATTCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
23415593 ATATCCGGGTTAAATCCCGCAGGCTTCGTGATGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* * *
23415631 ATATCCAGGTTAAATCCCGCAGGGC-TAGTACTGGTATT
1 ATATCCGGGTTAAATCCCGCA-GGCTTCGTGCTGGTATT
*
23415669 ATATTCGGG
1 ATATCCGGG
23415678 CCTTTGAGCC
Statistics
Matches: 202, Mismatches: 34, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
38 199 0.99
39 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:23415767 original size:45 final size:45
Alignment explanation
Indices: 23415671--23415798 Score: 149
Period size: 46 Copynumber: 2.9 Consensus size: 45
23415661 CTGGTATTAT
* * * *
23415671 ATTCGGGCCTTT-GAGCCTAGCAGACTATTATGTCGGTGAGACATT
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA-ACATG
23415716 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAA-ATG
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAACATG
* *
23415760 ATATCGGG-C-TTCGAGCCTAGCAGGCGA-AATGCCAGTGAA
1 AT-TCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
23415799 TGAATAAAAG
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
42 11 0.15
43 17 0.23
44 5 0.07
45 18 0.24
46 24 0.32
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (45 bp):
ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAACATG
Found at i:23417319 original size:22 final size:23
Alignment explanation
Indices: 23417280--23417328 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
23417270 GGCTATAAAA
23417280 TATAAAATTCGATCATCTGTTAG
1 TATAAAATTCGATCATCTGTTAG
* * *
23417303 TATAAATTTTGAT-ATCTGTTCG
1 TATAAAATTCGATCATCTGTTAG
23417325 TATA
1 TATA
23417329 TTTGAGACGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (23 bp):
TATAAAATTCGATCATCTGTTAG
Found at i:23418876 original size:26 final size:26
Alignment explanation
Indices: 23418839--23418978 Score: 192
Period size: 26 Copynumber: 5.2 Consensus size: 26
23418829 TGATACAAAT
* * *
23418839 TGATAATAGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23418865 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
23418891 TGATAATAGGTTAGGTTAGGTAAATGTTCCA
1 TGATAAT--G---GGTTAGGTAAATGTTTCA
23418922 TGATAATGGGTTAGGTAAA-GTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23418947 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23418973 TGATAA
1 TGATAA
23418979 GAATATCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
25 24 0.23
26 53 0.51
28 1 0.01
29 1 0.01
31 24 0.23
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:23418880 original size:31 final size:30
Alignment explanation
Indices: 23418845--23418962 Score: 128
Period size: 31 Copynumber: 4.2 Consensus size: 30
23418835 AAATTGATAA
23418845 TAGGTTAGGCAAATGTTCCATGATAATGGGT
1 TAGGTTAGG-AAATGTTCCATGATAATGGGT
* *
23418876 TAGG-T---AAATGTTTCATGATAATAGGT
1 TAGGTTAGGAAATGTTCCATGATAATGGGT
23418902 TAGGTTAGGTAAATGTTCCATGATAATGGGT
1 TAGGTTAGG-AAATGTTCCATGATAATGGGT
*
23418933 TAGG-T---AAA-GTTTCATGATAATGGGT
1 TAGGTTAGGAAATGTTCCATGATAATGGGT
23418958 TAGGT
1 TAGGT
23418963 AAATGTTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
25 20 0.26
26 26 0.34
27 1 0.01
30 2 0.03
31 27 0.36
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.36
Consensus pattern (30 bp):
TAGGTTAGGAAATGTTCCATGATAATGGGT
Found at i:23418917 original size:57 final size:56
Alignment explanation
Indices: 23418845--23418962 Score: 209
Period size: 57 Copynumber: 2.1 Consensus size: 56
23418835 AAATTGATAA
23418845 TAGGTTAGGCAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
1 TAGGTTAGGCAAATGTTCCATGATAATGGGTTAGGTAAA-GTTTCATGATAATAGGT
* *
23418902 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCATGATAATGGGT
1 TAGGTTAGGCAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCATGATAATAGGT
23418958 TAGGT
1 TAGGT
23418963 AAATGTTTCA
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 21 0.36
57 38 0.64
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.36
Consensus pattern (56 bp):
TAGGTTAGGCAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCATGATAATAGGT
Found at i:23421006 original size:135 final size:137
Alignment explanation
Indices: 23420763--23421047 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
23420753 GAGTAGTCTC
23420763 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
23420828 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
23420892 ACTGTTA
131 ACTGTTA
*
23420899 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
23420963 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
23421028 ACTGTTA
131 ACTGTTA
**
23421035 CCTGAATGGGCTT
1 CCCAAATGGGCTT
23421048 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 95 0.66
136 49 0.34
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:23424764 original size:26 final size:26
Alignment explanation
Indices: 23424727--23424862 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
23424717 TGATACAAAT
* *
23424727 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23424753 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
23424779 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23424805 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23424831 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23424857 TGATAA
1 TGATAA
23424863 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:23426901 original size:134 final size:136
Alignment explanation
Indices: 23426646--23426928 Score: 509
Period size: 134 Copynumber: 2.1 Consensus size: 136
23426636 GAGTAGTCTC
23426646 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
23426711 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTA-CA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTACCA
23426775 CTGTTA
131 CTGTTA
*
23426781 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
23426845 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTACC
23426909 ACTGTTA
130 ACTGTTA
**
23426916 CCTGAATGGGCTT
1 CCCAAATGGGCTT
23426929 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
133 37 0.26
134 67 0.47
135 39 0.27
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTACCA
CTGTTA
Found at i:23430652 original size:26 final size:25
Alignment explanation
Indices: 23430615--23430747 Score: 205
Period size: 26 Copynumber: 5.2 Consensus size: 25
23430605 TGATACAAAT
* *
23430615 TGATAATAGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
23430641 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
*
23430666 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
23430692 TGATAATGGGTTAGGTAAAT-TTCA
1 TGATAATGGGTTAGGTAAATGTTCA
23430716 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
23430742 TGATAA
1 TGATAA
23430748 GAATATCATG
Statistics
Matches: 100, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
24 22 0.22
25 26 0.26
26 52 0.52
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:23430737 original size:50 final size:51
Alignment explanation
Indices: 23430615--23430747 Score: 232
Period size: 51 Copynumber: 2.6 Consensus size: 51
23430605 TGATACAAAT
*
23430615 TGATAATAGGTTAGGCAAATGTTCCATGATAATGGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCA
23430666 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAT-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCA
* *
23430716 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
23430748 GAATATCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
50 34 0.43
51 45 0.57
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCA
Found at i:23433326 original size:40 final size:39
Alignment explanation
Indices: 23433260--23433406 Score: 131
Period size: 39 Copynumber: 3.8 Consensus size: 39
23433250 AAATTGAATG
*
23433260 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * ****
23433299 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * *
23433339 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GA-AATT
*
23433378 CTATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
23433407 TGCACGTGAT
Statistics
Matches: 86, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 43 0.50
40 40 0.47
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAAATT
Found at i:23437113 original size:40 final size:40
Alignment explanation
Indices: 23436985--23437115 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
23436975 TATGCTGGAA
* * * *
23436985 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
23437025 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
23437065 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
23437105 ATTATATCCGG
1 ATTATATCCGG
23437116 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:23437760 original size:26 final size:26
Alignment explanation
Indices: 23437731--23437845 Score: 151
Period size: 26 Copynumber: 4.3 Consensus size: 26
23437721 ATGATCATTC
23437731 CATGATAATGGGTTAGGTAAATGTTT
1 CATGATAATGGGTTAGGTAAATGTTT
* *
23437757 CATGATAATAGGTTAGGTTAAGTAAATGTTC
1 CATGATAAT--G---GGTTAGGTAAATGTTT
*
23437788 CATGATAATGGGTTAGGT-AAGGTTT
1 CATGATAATGGGTTAGGTAAATGTTT
23437813 CATGATAATGGGTTAGGTAAATGTTT
1 CATGATAATGGGTTAGGTAAATGTTT
23437839 CATGATA
1 CATGATA
23437846 GAATATCATG
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
25 23 0.30
26 29 0.38
28 1 0.01
29 1 0.01
31 23 0.30
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
CATGATAATGGGTTAGGTAAATGTTT
Found at i:23437782 original size:31 final size:31
Alignment explanation
Indices: 23437741--23437805 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
23437731 CATGATAATG
* *
23437741 GGTTAGGTAAATGTTTCATGATAATAGGTTA
1 GGTTAAGTAAATGTTCCATGATAATAGGTTA
*
23437772 GGTTAAGTAAATGTTCCATGATAATGGGTTA
1 GGTTAAGTAAATGTTCCATGATAATAGGTTA
23437803 GGT
1 GGT
23437806 AAGGTTTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.37
Consensus pattern (31 bp):
GGTTAAGTAAATGTTCCATGATAATAGGTTA
Found at i:23440843 original size:46 final size:46
Alignment explanation
Indices: 23440788--23440968 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
23440778 TAGGATGGTT
23440788 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
23440834 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
23440880 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
23440927 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23440969 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:23440949 original size:93 final size:93
Alignment explanation
Indices: 23440790--23440960 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
23440780 GGATGGTTGA
* * *
23440790 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
23440855 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23440883 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
23440948 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23440961 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23442843 original size:40 final size:40
Alignment explanation
Indices: 23442728--23442845 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 40
23442718 GCTGGAAAGT
* * * ** *
23442728 TAAGACCCGAAGGCAATTGCGCTAGTGGCTACATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGC
* ** *
23442768 TAAGACCCGAAGGCATTCGTGCGAGACATTTTATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGC
23442808 TAAGACCCGAAGGCATTTGTGC-ACGTGATTATATCCGG
1 TAAGACCCGAAGGCATTTGTGCGA-GTGATTATATCCGG
23442846 TTATATTCCG
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGC
Found at i:23449167 original size:26 final size:26
Alignment explanation
Indices: 23449099--23449232 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
23449089 TGATACAAAT
23449099 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23449124 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23449149 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23449175 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23449201 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23449227 TGATAA
1 TGATAA
23449233 GAATTCATGT
Statistics
Matches: 104, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
24 13 0.12
25 18 0.17
26 73 0.70
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:23452232 original size:46 final size:46
Alignment explanation
Indices: 23452177--23452357 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
23452167 TAGGATGGTT
23452177 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
23452223 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
23452269 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
23452316 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23452358 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:23452338 original size:93 final size:93
Alignment explanation
Indices: 23452179--23452349 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
23452169 GGATGGTTGA
* * *
23452179 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
23452244 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23452272 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
23452337 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23452350 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23454231 original size:40 final size:40
Alignment explanation
Indices: 23454116--23454233 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 40
23454106 GCTGGAAAGT
* * * ** *
23454116 TAAGACCCGAAGGCAATTGCGCTAGTGGCTACATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGC
* ** *
23454156 TAAGACCCGAAGGCATTCGTGCGAGACATTTTATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGC
23454196 TAAGACCCGAAGGCATTTGTGC-ACGTGATTATATCCGG
1 TAAGACCCGAAGGCATTTGTGCGA-GTGATTATATCCGG
23454234 TTATATTCCG
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGC
Found at i:23456783 original size:136 final size:137
Alignment explanation
Indices: 23456538--23456823 Score: 511
Period size: 136 Copynumber: 2.1 Consensus size: 137
23456528 GAGTAGTCTC
*
23456538 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
* *
23456603 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
23456668 ACTGTTA
131 ACTGTTA
*
23456675 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
23456739 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
23456804 ACTGTTA
131 ACTGTTA
**
23456811 CCTGAATGGGCTT
1 CCCAAATGGGCTT
23456824 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 123 0.86
137 20 0.14
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGACCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:23458821 original size:16 final size:17
Alignment explanation
Indices: 23458800--23458835 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
23458790 AACCATTACG
23458800 ACAGAGAGAGAGAGA-A
1 ACAGAGAGAGAGAGAGA
*
23458816 ACAGAGAGATAGAGAGA
1 ACAGAGAGAGAGAGAGA
23458833 ACA
1 ACA
23458836 ATTGTGTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.56, C:0.08, G:0.33, T:0.03
Consensus pattern (17 bp):
ACAGAGAGAGAGAGAGA
Found at i:23462558 original size:20 final size:20
Alignment explanation
Indices: 23462533--23462578 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
23462523 GGTGTTACAG
23462533 AACACTTAACCACTGAGGCA
1 AACACTTAACCACTGAGGCA
23462553 AACACTTAACCACTGAGGCA
1 AACACTTAACCACTGAGGCA
23462573 AACACT
1 AACACT
23462579 CATTTGTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.41, C:0.30, G:0.13, T:0.15
Consensus pattern (20 bp):
AACACTTAACCACTGAGGCA
Found at i:23468986 original size:27 final size:27
Alignment explanation
Indices: 23468948--23469302 Score: 247
Period size: 27 Copynumber: 13.1 Consensus size: 27
23468938 AAGTACCCCC
* * *
23468948 ATTTACAGAATTACCGTTCTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
23468975 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
23469002 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * ***
23469029 ATTTACA-AACTTACTAAAATACCC-CTG
1 ATTTATAGAA-TTACCATTTTACCCTC-G
* * * * *** *
23469056 GTTTGTAAAATTACTAAAATACCCCCTG
1 ATTTATAGAATTACCATTTTACCCTC-G
* * * ***
23469084 ATTTGTAAAATTACTAAAATACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* ***
23469111 ACTTGTA-AAAATTACCAAAGTACCCTCG
1 A-TT-TATAGAATTACCATTTTACCCTCG
*
23469139 ATTTATAGAATTA-C-TGTTTACTCTCG
1 ATTTATAGAATTACCAT-TTTACCCTCG
* * *
23469165 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
23469192 ATTTATAGAATTACCATTTTACCATCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
23469219 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
23469246 ATTTACA-ACATTACCACTTTACCCTC-
1 ATTTATAGA-ATTACCATTTTACCCTCG
* * *
23469272 AGTTTACAAAATTACCGTTTTACCCTCG
1 A-TTTATAGAATTACCATTTTACCCTCG
23469300 ATT
1 ATT
23469303 GTGAAATTAC
Statistics
Matches: 277, Mismatches: 37, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
26 26 0.09
27 196 0.71
28 54 0.19
29 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.36
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:23469015 original size:54 final size:54
Alignment explanation
Indices: 23468948--23469302 Score: 283
Period size: 54 Copynumber: 6.6 Consensus size: 54
23468938 AAGTACCCCC
* *
23468948 ATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACCATTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCG
* * * * ***
23469002 ATTTATAGAATTACCGTTTTACCCTCGATTTACA-AACTTACTAAAATACCC-CTG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTATAGAA-TTACCATTTTACCCTC-G
* ** ***** * * * * ***
23469056 GTTTGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACTAAAATACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTC-GATTTATAGAATTACCATTTTACCCTCG
**** *
23469111 ACTTGTA-AAAATTACCAAAGTACCCTCGATTTATAGAATTA-C-TGTTTACTCTCG
1 A-TT-TACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCAT-TTTACCCTCG
*
23469165 ATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCATCG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCG
* * * *
23469219 ATTTATAGAATTACCGTTTTACCCTCGATTTACA-ACATTACCACTTTACCCTC-
1 ATTTACAAAATTACCGTTTTACCCTCGATTTATAGA-ATTACCATTTTACCCTCG
23469272 AGTTTACAAAATTACCGTTTTACCCTCGATT
1 A-TTTACAAAATTACCGTTTTACCCTCGATT
23469303 GTGAAATTAC
Statistics
Matches: 245, Mismatches: 43, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.01
53 37 0.15
54 149 0.61
55 34 0.14
56 22 0.09
57 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.36
Consensus pattern (54 bp):
ATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCG
Found at i:23469090 original size:28 final size:27
Alignment explanation
Indices: 23469021--23469153 Score: 131
Period size: 28 Copynumber: 4.9 Consensus size: 27
23469011 ATTACCGTTT
* ** *
23469021 TACCCTCGATTTACAAACTTACTAAAA
1 TACCCCCGATTTGTAAAATTACTAAAA
* *
23469048 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCCCGATTTGTAAAATTACTAAAA
23469075 TACCCCCTGATTTGTAAAATTACTAAAA
1 TACCCCC-GATTTGTAAAATTACTAAAA
* * * *
23469103 TACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCCCGATTTGT-AAAATTACTAAAA
* * *
23469131 TACCCTCGATTTATAGAATTACT
1 TACCCCCGATTTGTAAAATTACT
23469154 GTTTACTCTC
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
27 40 0.45
28 48 0.55
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCCCGATTTGTAAAATTACTAAAA
Found at i:23469117 original size:55 final size:55
Alignment explanation
Indices: 23469021--23469153 Score: 144
Period size: 55 Copynumber: 2.4 Consensus size: 55
23469011 ATTACCGTTT
* * * ** *
23469021 TACCCTCGATTTACAAACTTACTAAAATACCCCTGGTTTGT-AAAATTACTAAAA
1 TACCCCCGATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAA
* *
23469075 TACCCCCTGATTTGTAAAATTACTAAAATA-CCCTCGACTTGTAAAAATTACCAAAG
1 TACCCCC-GATTTATAAAATTACTAAAATACCCCT-GACTTGTAAAAATTACCAAAA
* *
23469131 TACCCTCGATTTATAGAATTACT
1 TACCCCCGATTTATAAAATTACT
23469154 GTTTACTCTC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
54 10 0.15
55 38 0.58
56 17 0.26
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (55 bp):
TACCCCCGATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAA
Found at i:23469324 original size:27 final size:27
Alignment explanation
Indices: 23469301--23469459 Score: 169
Period size: 27 Copynumber: 5.9 Consensus size: 27
23469291 TTACCCTCGA
**
23469301 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCAAAATACCCCTAGT
**
23469327 AGGATAGAA-TTACCAAAATACCCCTAGT
1 TTG-T-GAAATTACCAAAATACCCCTAGT
*
23469355 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* * *
23469382 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* * * *
23469409 TTGTGGAATTACCGAAATACCCTTAAT
1 TTGTGAAATTACCAAAATACCCCTAGT
*
23469436 TTGTAAAATTACCAAAATACCCCT
1 TTGTGAAATTACCAAAATACCCCT
23469460 GATTTACAAA
Statistics
Matches: 109, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.03
27 100 0.92
28 6 0.06
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
TTGTGAAATTACCAAAATACCCCTAGT
Found at i:23469474 original size:27 final size:25
Alignment explanation
Indices: 23469334--23469484 Score: 115
Period size: 27 Copynumber: 5.6 Consensus size: 25
23469324 TGTAGGATAG
*
23469334 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCT-GATT-TAA
*
23469361 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCT-GATT-TAA
* * **
23469388 AATTACCAAAATACCACTGGTTTGTGG
1 AATTACCAAAATACCCCT-GATT-TAA
* * *
23469415 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTGA-TT-TAA
23469442 AATTACCAAAATACCCCTGATTTACA
1 AATTACCAAAATACCCCTGATTTA-A
23469468 AAGTTA-CAGAAATACCC
1 AA-TTACCA-AAATACCC
23469485 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.02
26 7 0.07
27 97 0.92
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (25 bp):
AATTACCAAAATACCCCTGATTTAA
Found at i:23469480 original size:54 final size:53
Alignment explanation
Indices: 23469334--23469542 Score: 181
Period size: 54 Copynumber: 3.8 Consensus size: 53
23469324 TGTAGGATAG
* * * *
23469334 AATTACCAAAATACCCCTAGTTTGTA-AAATTACCA-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCACT-GGTT-TACAAATTA-CAGAAATACCCTTAATTTGTAA
*** *
23469388 AATTACCAAAATACCACTGGTTTGTGGAATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCACTGGTTT-ACAAATTACAGAAATACCCTTAATTTGTAA
* * * *
23469442 AATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCTAA
1 AATTACCAAAATACCACTGGTTTACAAA-TTACAGAAATACCCTT-AATTTGTAA
* * *
23469497 AACTTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTT
1 AA-TTACCA-AAATACCACTGGTTTAC-AAATTACAGAAATACCCTT
23469543 GGTTTGTAGA
Statistics
Matches: 127, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 75 0.59
55 10 0.08
56 32 0.25
57 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (53 bp):
AATTACCAAAATACCACTGGTTTACAAATTACAGAAATACCCTTAATTTGTAA
Found at i:23469547 original size:27 final size:27
Alignment explanation
Indices: 23469415--23469543 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
23469405 TGGTTTGTGG
* **
23469415 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCGAAATACCCTTGATTTACAA
* *
23469442 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTTGATTTACAA
* *
23469469 AGTTACAGAAATACCCTTGACTTT-CTAA
1 AATTACCGAAATACCCTTGA-TTTAC-AA
** * *
23469497 AACTTATAGAAATACCATTGGTTTACAA
1 AA-TTACCGAAATACCCTTGATTTACAA
*
23469525 AATTACTGAAATACCCTTG
1 AATTACCGAAATACCCTTG
23469544 GTTTGTAGAT
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
27 53 0.65
28 13 0.16
29 16 0.20
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTACAA
Found at i:23469629 original size:26 final size:26
Alignment explanation
Indices: 23469588--23469660 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 26
23469578 AAATGACTAA
*
23469588 AATACCCCTATTAGGTAAAAAGACCGT
1 AATACCCCT-GTAGGTAAAAAGACCGT
**
23469615 AA-AGCCCCTGTAGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGTAAAAAGACCGT
*
23469641 AATACCTCTGTATGGTAAAA
1 AATACCCCTGTA-GGTAAAA
23469661 TGACGAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 24 0.63
27 14 0.37
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (26 bp):
AATACCCCTGTAGGTAAAAAGACCGT
Found at i:23470395 original size:20 final size:21
Alignment explanation
Indices: 23470360--23470416 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
23470350 TGATACGTGG
23470360 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
23470378 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
23470399 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
23470417 GAATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:23470544 original size:52 final size:51
Alignment explanation
Indices: 23470466--23470588 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
23470456 GAGGATGTGC
*
23470466 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TACCCCAGTTTACCG
23470518 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTACCCCAGTTTACCG
*
23470569 AAAAGGGCTT-TCCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
23470589 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 9 0.13
51 24 0.35
52 36 0.52
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTACCCCAGTTTACCG
Found at i:23470565 original size:25 final size:26
Alignment explanation
Indices: 23470466--23470588 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
23470456 GAGGATGTGC
**
23470466 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
23470492 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
23470518 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
23470544 AAAAGGGCTT-TACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
23470569 AAAAGGGCTT-TCCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
23470589 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 31 0.35
26 58 0.65
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:23470792 original size:42 final size:42
Alignment explanation
Indices: 23470733--23470824 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
23470723 TAGTCTCCCC
*
23470733 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
* *
23470775 AAATGGGCTTGCATACATTTATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
23470817 AAATGGGC
1 AAATGGGC
23470825 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:23470883 original size:31 final size:31
Alignment explanation
Indices: 23470848--23470926 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
23470838 CGTTTACAAT
23470848 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
23470879 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
23470910 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
23470927 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:23474170 original size:18 final size:18
Alignment explanation
Indices: 23474147--23474188 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
23474137 TAAAAATGAG
*
23474147 AGAAAAGAATAAAGA-TCA
1 AGAAAACAA-AAAGAGTCA
*
23474165 AGAAAACAAAAAGAGTGA
1 AGAAAACAAAAAGAGTCA
23474183 AGAAAA
1 AGAAAA
23474189 AAAGAGTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.69, C:0.05, G:0.19, T:0.07
Consensus pattern (18 bp):
AGAAAACAAAAAGAGTCA
Found at i:23476324 original size:24 final size:23
Alignment explanation
Indices: 23476296--23476358 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 23
23476286 AACCGAATTT
* * *
23476296 GCACACATAGTGCTTATTACACTC
1 GCACACATAGTGCATAGTAAAC-C
23476320 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTG-CATAGTAAACC
23476344 GCACACATAGTGCAT
1 GCACACATAGTGCAT
23476359 TGGATTTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.09
24 25 0.71
25 7 0.20
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (23 bp):
GCACACATAGTGCATAGTAAACC
Found at i:23485034 original size:63 final size:64
Alignment explanation
Indices: 23484888--23485136 Score: 204
Period size: 63 Copynumber: 3.8 Consensus size: 64
23484878 TACAGATAGT
* ** * * * *
23484888 ATGTAGCTAGGTCACATGTATGGTGCTA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
*
23484951 TATG
62 TA-A
* * *
23484955 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGA-AGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
23485018 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
23485083 A
64 A
* * *
23485084 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
23485137 CGAACTATAT
Statistics
Matches: 149, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 43 0.29
64 5 0.03
65 39 0.26
66 14 0.09
67 29 0.19
68 17 0.11
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:23489434 original size:65 final size:63
Alignment explanation
Indices: 23489363--23489567 Score: 196
Period size: 67 Copynumber: 3.2 Consensus size: 63
23489353 CATCATGTGT
* *
23489363 ACAAGAGAGCTACAAGACATTATATAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
1 ACAAGAGAGCTACGAGATA-TAT-TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
* * * * * * * *
23489428 ACAAGAGAGCTACGGGATATACGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATA-TTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
23489493 AG
62 AG
* * * * * *
23489495 ACAAGAGAGCTACGAGATAAATTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATATTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
23489557 TACAAGAGAGC
1 -ACAAGAGAGC
23489568 CGAACTATAT
Statistics
Matches: 112, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 20 0.18
65 24 0.21
66 17 0.15
67 31 0.28
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (63 bp):
ACAAGAGAGCTACGAGATATATTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:23490655 original size:2 final size:2
Alignment explanation
Indices: 23490648--23490674 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23490638 TCATGACATG
23490648 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
23490675 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23498483 original size:21 final size:20
Alignment explanation
Indices: 23498437--23498484 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
23498427 GAGGACTAAA
23498437 TCAATAACTTATGAAATTTTT
1 TCAA-AACTTATGAAATTTTT
*
23498458 ACAAAACTT-TGAAAATTTTT
1 TCAAAACTTATG-AAATTTTT
23498478 CTCAAAA
1 -TCAAAA
23498485 TAGGGGACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 13 0.57
21 8 0.35
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (20 bp):
TCAAAACTTATGAAATTTTT
Found at i:23501242 original size:42 final size:43
Alignment explanation
Indices: 23501130--23501257 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
23501120 AGTTCGTACA
*
23501130 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
* * * *
23501173 ATGCCACTGTCCCAGATAG-GGTCTTACACGAAATCATATAT-G
1 ATGCCAATGTCCCAGA-CGTGGTCTTACATGAAATCAAATATCG
* * * * *
23501215 ATGCTAATGTCCTAGACGTGGTATTACATGAAAACACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
23501258 GAATCCTATG
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 32 0.46
43 35 0.51
44 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
Found at i:23504448 original size:20 final size:20
Alignment explanation
Indices: 23504423--23504470 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
23504413 GAGAAGGAAG
*
23504423 ATCGATACCTTAGGAAATAT
1 ATCGATACCTTAAGAAATAT
* *
23504443 ATCGATACGTTAAGAAATGT
1 ATCGATACCTTAAGAAATAT
23504463 ATCGATAC
1 ATCGATAC
23504471 TGGATCGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (20 bp):
ATCGATACCTTAAGAAATAT
Found at i:23507989 original size:20 final size:21
Alignment explanation
Indices: 23507960--23507998 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
23507950 TTATTTTTTA
23507960 ATAAAATTTTT-ATAAATTAT
1 ATAAAATTTTTAATAAATTAT
*
23507980 ATAAATTTTTTAATAAATT
1 ATAAAATTTTTAATAAATT
23507999 TTGTTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATAAAATTTTTAATAAATTAT
Found at i:23508021 original size:12 final size:11
Alignment explanation
Indices: 23507983--23508025 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
23507973 AAATTATATA
23507983 AATTTTTTAAT
1 AATTTTTTAAT
*
23507994 AAATTTTGTTTAT
1 -AATTTT-TTAAT
23508007 AATTTTTTAACT
1 AATTTTTTAA-T
23508019 AATTTTT
1 AATTTTT
23508026 AAATTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 3 0.11
12 20 0.74
13 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (11 bp):
AATTTTTTAAT
Found at i:23514732 original size:14 final size:14
Alignment explanation
Indices: 23514713--23514743 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
23514703 AATATGAAAG
23514713 ACTTGTAAATAAAT
1 ACTTGTAAATAAAT
23514727 ACTTGTAAATAAAT
1 ACTTGTAAATAAAT
23514741 ACT
1 ACT
23514744 AATAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (14 bp):
ACTTGTAAATAAAT
Found at i:23515091 original size:18 final size:18
Alignment explanation
Indices: 23515070--23515109 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
23515060 TTTCTTAATA
23515070 ATCAATTTTTATATTTTT
1 ATCAATTTTTATATTTTT
*
23515088 ATCAATTTTTTTATTTTT
1 ATCAATTTTTATATTTTT
23515106 ATCA
1 ATCA
23515110 TATGGATAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (18 bp):
ATCAATTTTTATATTTTT
Found at i:23516786 original size:23 final size:21
Alignment explanation
Indices: 23516760--23516801 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
23516750 TCTCCCAAAT
23516760 AATACAAATACAAGAAAAATTAA
1 AATAC-AATACAA-AAAAATTAA
*
23516783 AATACAATCCAAAAAAATT
1 AATACAATACAAAAAAATT
23516802 TACACAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 6 0.33
23 5 0.28
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (21 bp):
AATACAATACAAAAAAATTAA
Found at i:23516984 original size:23 final size:24
Alignment explanation
Indices: 23516942--23516988 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
23516932 ATAAATGATA
23516942 TTTTTAATCATTTTAAATTTATATT
1 TTTTTAATCA-TTTAAATTTATATT
*
23516967 TTTTTAATCA-TTACATTTATAT
1 TTTTTAATCATTTAAATTTATAT
23516989 GTGAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.52
25 10 0.48
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTTAATCATTTAAATTTATATT
Found at i:23518379 original size:20 final size:20
Alignment explanation
Indices: 23518346--23518402 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
23518336 GAAGACCAGA
* *
23518346 TTTTATATTAATTTAGCCA-T
1 TTTTATTTTAATTTA-ACATT
*
23518366 TTTTATTTTTATTTTAACATT
1 TTTTA-TTTTAATTTAACATT
23518387 TTTTATTTTAATTTAA
1 TTTTATTTTAATTTAA
23518403 TTTTTAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATTTTAATTTAACATT
Found at i:23523640 original size:26 final size:26
Alignment explanation
Indices: 23523604--23523655 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23523594 GGAACTCAAT
23523604 TTCCTTTCTTTTTAGATCAACATATG
1 TTCCTTTCTTTTTAGATCAACATATG
*
23523630 TTCCTTTCTTTTTAGATCAGCATATG
1 TTCCTTTCTTTTTAGATCAACATATG
23523656 ACTTTTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (26 bp):
TTCCTTTCTTTTTAGATCAACATATG
Found at i:23533658 original size:55 final size:55
Alignment explanation
Indices: 23533574--23533682 Score: 218
Period size: 55 Copynumber: 2.0 Consensus size: 55
23533564 CCAACGTGAG
23533574 GATACTACAGTGGGGTTAGAACAACATATAAAATCCTCAAATCAAGTTTTTATTA
1 GATACTACAGTGGGGTTAGAACAACATATAAAATCCTCAAATCAAGTTTTTATTA
23533629 GATACTACAGTGGGGTTAGAACAACATATAAAATCCTCAAATCAAGTTTTTATT
1 GATACTACAGTGGGGTTAGAACAACATATAAAATCCTCAAATCAAGTTTTTATT
23533683 GGCTTACATT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (55 bp):
GATACTACAGTGGGGTTAGAACAACATATAAAATCCTCAAATCAAGTTTTTATTA
Found at i:23537241 original size:48 final size:46
Alignment explanation
Indices: 23537087--23537412 Score: 221
Period size: 48 Copynumber: 6.8 Consensus size: 46
23537077 GGGTGACATG
* * * *
23537087 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCTTCAGCCA-TAATA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGATA
* * * * * * ** *
23537133 TGAGAGCCAGTATTAGACCATGTTTGGAACATGGCATTGATAATG-TAA
1 T--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT-A
*
23537181 TGAGAGGC-AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGATA
1 T--GA-GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
*
23537229 TGTACGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACATTG-TGA
1 TG-A-GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAT-A
* * * *
23537280 -GAGCTAGTGTAAGACCATTTCTAGGACATGGTATCGGCATTGAGA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
* * * * * *
23537325 CGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTAGGCATG
1 --TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TG-ATA
* *
23537375 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGG
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
23537413 TAAATTCACC
Statistics
Matches: 222, Mismatches: 40, Indels: 34
0.75 0.14 0.11
Matches are distributed among these distances:
45 6 0.03
46 2 0.01
47 6 0.03
48 194 0.87
49 5 0.02
50 3 0.01
51 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
Found at i:23537261 original size:96 final size:95
Alignment explanation
Indices: 23537092--23537412 Score: 294
Period size: 96 Copynumber: 3.3 Consensus size: 95
23537082 ACATGTGAGC
* * * * * *
23537092 CAGTGTAAGACCATGTCTGGGACATGGCTTCAGCCA-TAATATGAGAGCCAGTATTAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGATATGAGAGCTAGTGTAAGACCATGT
* * *
23537156 TTGGAACATGGCAT-TGATA-ATGTAATGAGAGG
65 TTGGGACATGGCATCGGACACAT-T-ATGAGA-G
* *
23537188 CAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGATATGTA-CGCTAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATG-AGAGCTAGTGTAAGACCATGT
* * * *
23537252 CTGGGACATGGCGTCGGCCACATTGTGAGAG
65 TTGGGACATGGCATCGGACACATTATGAGAG
* * * * *
23537283 CTAGTGTAAGACCATTTCTAGGACATGGTATCGGCATTGAGACGAGAGCTAGTGTAAGACCATGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGT
* * * *
23537348 TTGGGACATGGCATCAGCCTAGGCA-TGTGAG-C
65 TTGGGACATGGCATCGGAC-A--CATTATGAGAG
*
23537380 CAATGTAAGACCATGTCTGGGACATGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
23537413 TAAATTCACC
Statistics
Matches: 186, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
95 6 0.03
96 164 0.88
97 6 0.03
98 8 0.04
99 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTT
TGGGACATGGCATCGGACACATTATGAGAG
Found at i:23537353 original size:144 final size:144
Alignment explanation
Indices: 23537081--23537412 Score: 368
Period size: 144 Copynumber: 2.3 Consensus size: 144
23537071 ACATTTGGGT
* * *
23537081 GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCTTCAGCCATAATATGAGAGCCAGTAT
1 GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTAT
* * * * *
23537146 TAGACCATGTTTGGAACATGGCATTGATAATGTAATGAGAGGCAGTGTAAGACCATGTCTGGGAT
66 AAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGGCAGTGTAAGACCATGTCTGGGAC
* *
23537211 ATGGCATCGGCATT
131 ATGGCATCAGCATA
* * * * * * *
23537225 GATATGT-ACGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACATTGTGAGAGCTAGTG
1 GACATGTGA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTA
* * * *
23537289 TAAGACCAT-TTCTAGG-ACATGGTATCGGCATTG-AGACGAGA-GCTAGTGTAAGACCATGTTT
65 TAAGACCATGTT-T-GGAACATGGCATCGACAATGTA-ACGAGAGGC-AGTGTAAGACCATGTCT
*
23537350 GGGACATGGCATCAGCCTA
126 GGGACATGGCATCAGCATA
* *
23537369 GGCATGTGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGG
1 GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
23537413 TAAATTCACC
Statistics
Matches: 156, Mismatches: 26, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
143 6 0.04
144 147 0.94
145 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (144 bp):
GACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTAT
AAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGGCAGTGTAAGACCATGTCTGGGAC
ATGGCATCAGCATA
Found at i:23544561 original size:21 final size:21
Alignment explanation
Indices: 23544535--23544580 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
23544525 TTTATGCGAT
23544535 ATTATATTGTAATTTACTAGC
1 ATTATATTGTAATTTACTAGC
23544556 ATTATATTGTAATTTACTAGC
1 ATTATATTGTAATTTACTAGC
23544577 -TTAT
1 ATTAT
23544581 GTAAAAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.50
Consensus pattern (21 bp):
ATTATATTGTAATTTACTAGC
Found at i:23550951 original size:16 final size:16
Alignment explanation
Indices: 23550930--23550961 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
23550920 AGAAGGTTCC
23550930 ATCTGTGATAGTCTCA
1 ATCTGTGATAGTCTCA
23550946 ATCTGTGATAGTCTCA
1 ATCTGTGATAGTCTCA
23550962 TTGTGTACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (16 bp):
ATCTGTGATAGTCTCA
Found at i:23551931 original size:26 final size:26
Alignment explanation
Indices: 23551901--23551954 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
23551891 TTTTGATAAA
*
23551901 AACCGAGCCACTTTGGTGATTAATGT
1 AACCGAACCACTTTGGTGATTAATGT
*
23551927 AACCGAACCACTTTGGTGGTTAATGT
1 AACCGAACCACTTTGGTGATTAATGT
23551953 AA
1 AA
23551955 TCTTCCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
AACCGAACCACTTTGGTGATTAATGT
Found at i:23553441 original size:26 final size:25
Alignment explanation
Indices: 23553409--23553485 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
23553399 CTTTTTTATT
23553409 TATTTTTCTAATATTTTATATTTTTA
1 TATTTTT-TAATATTTTATATTTTTA
* * * *
23553435 TATTTTTTTTATCTTTTATAATTTTC
1 TA-TTTTTTAATATTTTATATTTTTA
*
23553461 TATTTTTTAAAATTTTGAT-TTTTTA
1 TATTTTTTAATATTTT-ATATTTTTA
23553486 GTGGGAAATC
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
25 15 0.38
26 20 0.50
27 5 0.12
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (25 bp):
TATTTTTTAATATTTTATATTTTTA
Found at i:23553442 original size:17 final size:18
Alignment explanation
Indices: 23553392--23553476 Score: 75
Period size: 17 Copynumber: 4.6 Consensus size: 18
23553382 AATACTGAGC
23553392 TTTATAACTTTTTTATTTATT
1 TTTATAA-TTTTTTA--TATT
* *
23553413 TTTCTAATATTTTATATT
1 TTTATAATTTTTTATATT
*
23553431 TTTAT-ATTTTTTTTATCT
1 TTTATAATTTTTTATAT-T
*
23553449 TTTATAATTTTCTAT-TT
1 TTTATAATTTTTTATATT
*
23553466 TTTAAAATTTT
1 TTTATAATTTT
23553477 GATTTTTTAG
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
17 20 0.37
18 15 0.28
19 7 0.13
20 6 0.11
21 6 0.11
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATAATTTTTTATATT
Found at i:23553476 original size:36 final size:36
Alignment explanation
Indices: 23553401--23553481 Score: 87
Period size: 36 Copynumber: 2.2 Consensus size: 36
23553391 CTTTATAACT
* *
23553401 TTTTTATTTATTTTTCTAATATTTTATATTTTTATA
1 TTTTTATTTATTTTTATAATATTTTATATTTTTAAA
23553437 TTTTT-TTTATCTTTTATAAT-TTTCTAT-TTTTTAAAA
1 TTTTTATTTAT-TTTTATAATATTT-TATATTTTT-AAA
*
23553473 TTTTGATTT
1 TTTTTATTT
23553482 TTTAGTGGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
35 13 0.34
36 22 0.58
37 3 0.08
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (36 bp):
TTTTTATTTATTTTTATAATATTTTATATTTTTAAA
Found at i:23553481 original size:16 final size:17
Alignment explanation
Indices: 23553448--23553485 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
23553438 TTTTTTTATC
* *
23553448 TTTTATAATTTTCTATT
1 TTTTAAAATTTTCGATT
23553465 TTTTAAAATTTT-GATT
1 TTTTAAAATTTTCGATT
23553481 TTTTA
1 TTTTA
23553486 GTGGGAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTTAAAATTTTCGATT
Found at i:23563826 original size:44 final size:42
Alignment explanation
Indices: 23563715--23563853 Score: 154
Period size: 42 Copynumber: 3.2 Consensus size: 42
23563705 TCTTACGTGT
* *
23563715 AATCAAATATGAATGCCACTATCCCAGAAAGGGTCTTACACGA
1 AATCAAATATG-ATGCCAATATCCCAGAAATGGTCTTACACGA
* * *
23563758 AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATATGATGCCAATATCCCAGAAATGGTCTTACACG-A
** *
23563801 AATCTCAAAT-TGATGCCAATATCCCAGATGTGGTCTTACACAA
1 AA--TCAAATATGATGCCAATATCCCAGAAATGGTCTTACACGA
*
23563844 AATCACATAT
1 AATCAAATAT
23563854 CGAAATCCTA
Statistics
Matches: 81, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
41 5 0.06
42 27 0.33
43 16 0.20
44 27 0.33
45 6 0.07
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (42 bp):
AATCAAATATGATGCCAATATCCCAGAAATGGTCTTACACGA
Found at i:23563827 original size:86 final size:85
Alignment explanation
Indices: 23563684--23563848 Score: 201
Period size: 86 Copynumber: 1.9 Consensus size: 85
23563674 AACTCGTACA
* * ** *
23563684 ATGCCAATGTTCCAAACGTGGTCTTACGTGTAATCAAATATGAATGCCACTATCCCAGAAAG-GG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAATATGAATGCCAATATCCCAG-AAGTGG
*
23563748 TCTTACACGAAATCAAATACG
65 TCTTACACAAAATCAAATACG
* *
23563769 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-TG-ATGCCAATATCCCAGATGT
1 ATGCCAATGTCCCAAACATGGTCTTACACGT-AA--TCAAATATGAATGCCAATATCCCAGAAGT
23563832 GGTCTTACACAAAATCA
63 GGTCTTACACAAAATCA
23563849 CATATCGAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
85 28 0.41
86 32 0.47
87 2 0.03
88 6 0.09
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (85 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAATATGAATGCCAATATCCCAGAAGTGGT
CTTACACAAAATCAAATACG
Found at i:23568333 original size:24 final size:24
Alignment explanation
Indices: 23568306--23568353 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
23568296 TACCTAAAGG
23568306 GTTCGATACTCTAATCACAAATTC
1 GTTCGATACTCTAATCACAAATTC
* *
23568330 GTTCGATACTCTAATTACAGATTC
1 GTTCGATACTCTAATCACAAATTC
23568354 AGTAGACTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.35
Consensus pattern (24 bp):
GTTCGATACTCTAATCACAAATTC
Found at i:23571482 original size:43 final size:43
Alignment explanation
Indices: 23571434--23571591 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
23571424 AGCTCGTACA
* * * *
23571434 ATGCCAACGTCCCAGACGTGGCCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAATCAAATATCG
* * * *
23571477 ATGCC-ACTATCCCAGACAAGGTCATACACGAAATCAATTAT-G
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
23571519 ATGCCAATACCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGT-AATC-AAATATCG
* **
23571563 ATGCCAACGTCCCAGATGTGGTCTTACAC
1 ATGCCAACATCCCAGACATGGTCTTACAC
23571592 AAAATCACAT
Statistics
Matches: 90, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
42 27 0.30
43 37 0.41
44 26 0.29
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:23571535 original size:42 final size:44
Alignment explanation
Indices: 23571465--23571569 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 44
23571455 CCTTACATGT
* *
23571465 AATCAAATATCGATGCCACTATCCCAGACAAGGTCATACACG-A
1 AATCAAATATCGATGCCAATACCCCAGACAAGGTCATACACGTA
* * *
23571508 AATCAATTAT-GATGCCAATACCCCAGACATGGTCTTACACGTA
1 AATCAAATATCGATGCCAATACCCCAGACAAGGTCATACACGTA
*
23571551 AATCTCAA-ATCGATGCCAA
1 AATC-AAATATCGATGCCAA
23571570 CGTCCCAGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.52
43 16 0.31
44 9 0.17
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (44 bp):
AATCAAATATCGATGCCAATACCCCAGACAAGGTCATACACGTA
Found at i:23574496 original size:20 final size:20
Alignment explanation
Indices: 23574471--23574512 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
23574461 GGCGTTATAG
23574471 AAGATAGAATGTGGATCCTA
1 AAGATAGAATGTGGATCCTA
*
23574491 AAGATAGAATGTGGATCTTA
1 AAGATAGAATGTGGATCCTA
23574511 AA
1 AA
23574513 CCTATCCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (20 bp):
AAGATAGAATGTGGATCCTA
Found at i:23575510 original size:106 final size:107
Alignment explanation
Indices: 23575310--23575513 Score: 356
Period size: 106 Copynumber: 1.9 Consensus size: 107
23575300 GCAACCAGCC
* *
23575310 CCGCCTAGAGCAATGAGGTTCTTTTGTTGGAACTGTCAAGGGCTTGGGAAACCCTGTGATAGTTC
1 CCGCCTAGAGCAATGAGGTTCTTTTGTTGGAACTGTCAAGAGCTTGGGAAACCCTGCGATAGTTC
23575375 ATGAGCTCAAGCAACCCCTTATTGCTACTAACCTGCCAGCTA
66 ATGAGCTCAAGCAACCCCTTATTGCTACTAACCTGCCAGCTA
* *
23575417 CCGCCTAGAGCAATGAGGTTTTTTTGTTGGAACTGTCAAGAGCTTGGG-AACCTTGCGATAGTTC
1 CCGCCTAGAGCAATGAGGTTCTTTTGTTGGAACTGTCAAGAGCTTGGGAAACCCTGCGATAGTTC
*
23575481 ATGAGCTCAAGCAACTCCTTATTGCTACTAACC
66 ATGAGCTCAAGCAACCCCTTATTGCTACTAACC
23575514 CAAATATTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
106 46 0.50
107 46 0.50
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (107 bp):
CCGCCTAGAGCAATGAGGTTCTTTTGTTGGAACTGTCAAGAGCTTGGGAAACCCTGCGATAGTTC
ATGAGCTCAAGCAACCCCTTATTGCTACTAACCTGCCAGCTA
Found at i:23578416 original size:118 final size:118
Alignment explanation
Indices: 23578208--23578443 Score: 445
Period size: 118 Copynumber: 2.0 Consensus size: 118
23578198 GATTGTCTCA
*
23578208 CTGCTCATGAAATCCTGGTATTAGGCGGCCTCAATAATAATCTTCTCGTTGGTGATTACTCACAA
1 CTGCTCATGAAATCCTAGTATTAGGCGGCCTCAATAATAATCTTCTCGTTGGTGATTACTCACAA
23578273 TGCATTGACTAGATAGAGGACGTGATGAGGGTGTTTGACCTTAAAACTATTTC
66 TGCATTGACTAGATAGAGGACGTGATGAGGGTGTTTGACCTTAAAACTATTTC
*
23578326 CTGCTCGTGAAATCCTAGTATTAGGCGGCCTCAATAATAATCTTCTCGTTGGTGATTACTCACAA
1 CTGCTCATGAAATCCTAGTATTAGGCGGCCTCAATAATAATCTTCTCGTTGGTGATTACTCACAA
*
23578391 TGCATTGACTAGATAGAGGACGTGATGAGGGTGTTTGACCTTAAAGCTATTTC
66 TGCATTGACTAGATAGAGGACGTGATGAGGGTGTTTGACCTTAAAACTATTTC
23578444 TGACTTCATA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 115 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (118 bp):
CTGCTCATGAAATCCTAGTATTAGGCGGCCTCAATAATAATCTTCTCGTTGGTGATTACTCACAA
TGCATTGACTAGATAGAGGACGTGATGAGGGTGTTTGACCTTAAAACTATTTC
Found at i:23579301 original size:2 final size:2
Alignment explanation
Indices: 23579294--23579326 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
23579284 GTAGGGTAAA
23579294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23579327 AAGGGGTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23583118 original size:17 final size:17
Alignment explanation
Indices: 23583096--23583129 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23583086 TCTTCCAATG
23583096 TGATACTTTTAGAAACA
1 TGATACTTTTAGAAACA
23583113 TGATACTTTTAGAAACA
1 TGATACTTTTAGAAACA
23583130 CCGTATCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
TGATACTTTTAGAAACA
Found at i:23589182 original size:13 final size:13
Alignment explanation
Indices: 23589164--23589188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23589154 GAATTGATAT
23589164 GTGTGAAAATTTC
1 GTGTGAAAATTTC
23589177 GTGTGAAAATTT
1 GTGTGAAAATTT
23589189 TAATGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:23590364 original size:44 final size:42
Alignment explanation
Indices: 23590295--23590461 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 42
23590285 TAGGATTCCG
*
23590295 ATATGTGATTTCATGTAAGACCATGTCTGAGACGTTGGCATC
1 ATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
* * * *
23590337 AATTTGTGATTTACGTGTAAGACCATGTTTGGGACATTGGCATC
1 -ATATGTGATTT-CATGTAAGACCATGTCTGGGACGTTGGCATC
* * * * *
23590381 GTATATGAGTTCGTGTAAGACCTTGTCTGGGACAG-TGGCATC
1 ATATGTGATTTCATGTAAGACCATGTCTGGGAC-GTTGGCATC
* ** *
23590423 GATATGTGATTACATGTAAGACCACATCTGGAACGTTGG
1 -ATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGG
23590462 TGTTGTACGA
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
42 28 0.28
43 44 0.44
44 27 0.27
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
ATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:23590412 original size:42 final size:43
Alignment explanation
Indices: 23590308--23590446 Score: 147
Period size: 42 Copynumber: 3.2 Consensus size: 43
23590298 TGTGATTTCA
* * * * * *
23590308 TGTAAGACCATGTCTGAGACGTTGGCATCAATTTGTGATTTACG
1 TGTAAGACCATGTCTGGGACATTGGCATC-GTATATGAGTTACG
*
23590352 TGTAAGACCATGTTTGGGACATTGGCATCGTATATGAGTT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATATGAGTTACG
* * * *
23590394 TGTAAGACCTTGTCTGGGACAGTGGCATCG-ATATGTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATATGAG-TTACG
23590437 TGTAAGACCA
1 TGTAAGACCA
23590447 CATCTGGAAC
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
41 6 0.08
42 31 0.39
43 17 0.21
44 26 0.32
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATATGAGTTACG
Found at i:23592796 original size:93 final size:93
Alignment explanation
Indices: 23592682--23592853 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
23592672 CGCCCATAAG
* * *
23592682 CGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTTGCATCCATAGGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
23592746 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
23592775 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23592840 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23592854 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23592849 original size:46 final size:46
Alignment explanation
Indices: 23592675--23592850 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
23592665 TGTAACCCGC
* * *
23592675 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGC-ATTGCAT
* * *
23592721 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTGCAT
*
23592771 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATT-GCAT
*
23592814 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23592851 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.54
47 31 0.28
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTGCAT
Found at i:23592869 original size:46 final size:44
Alignment explanation
Indices: 23592727--23592869 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 44
23592717 GCATCCATAG
23592727 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-A
* * * *
23592775 -CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AA
1 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTA
23592820 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTA
23592866 GTGA
1 GTGA
23592870 CATGTCACTT
Statistics
Matches: 79, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTA
Found at i:23598482 original size:16 final size:16
Alignment explanation
Indices: 23598463--23598502 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
23598453 TTATCCTTTT
23598463 TTTATTTTTATTTAAA
1 TTTATTTTTATTTAAA
**
23598479 TTTATTTTTATTTTGA
1 TTTATTTTTATTTAAA
23598495 TTTATTTT
1 TTTATTTT
23598503 CTTTTCCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTATTTTTATTTAAA
Found at i:23598961 original size:2 final size:2
Alignment explanation
Indices: 23598956--23598988 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
23598946 TTTCAAACTC
23598956 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23598989 AAAGTCGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23600280 original size:107 final size:107
Alignment explanation
Indices: 23600157--23600370 Score: 410
Period size: 107 Copynumber: 2.0 Consensus size: 107
23600147 TTTAATGAAG
23600157 TGTTATGATCTTATAATACATAAAATTATATTTTATCATTGTATTAAATATTAATTATTTTAAAA
1 TGTTATGATCTTATAATACATAAAATTATATTTTATCATTGTATTAAATATTAATTATTTTAAAA
*
23600222 TTATTTATTTACTGATCACATATTAATATTTTTAATACAAAC
66 TTATTTATTTACTGATCACATATTAATATATTTAATACAAAC
23600264 TGTTATGATCTTATAATACATAAAATTATATTTTATCATTGTATTAAATATTAATTATTTTAAAA
1 TGTTATGATCTTATAATACATAAAATTATATTTTATCATTGTATTAAATATTAATTATTTTAAAA
*
23600329 TTATTTATTTATTGATCACATATTAATATATTTAATACAAAC
66 TTATTTATTTACTGATCACATATTAATATATTTAATACAAAC
23600371 CCTTTAACAA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.49
Consensus pattern (107 bp):
TGTTATGATCTTATAATACATAAAATTATATTTTATCATTGTATTAAATATTAATTATTTTAAAA
TTATTTATTTACTGATCACATATTAATATATTTAATACAAAC
Done.