Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 91 of 427
Found at i:23919500 original size:40 final size:40
Alignment explanation
Indices: 23919456--23919565 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
23919446 TTCACAATTT
* *
23919456 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
23919496 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
23919536 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
23919566 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:23921596 original size:80 final size:80
Alignment explanation
Indices: 23921512--23921660 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
23921502 TATGGTAACC
* * * *
23921512 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
23921576 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
23921592 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
23921657 CCGG
66 CCGG
23921661 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:23921602 original size:40 final size:38
Alignment explanation
Indices: 23921553--23921660 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
23921543 ATCACGATTT
*
23921553 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
23921593 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
23921633 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
23921661 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:23930518 original size:21 final size:22
Alignment explanation
Indices: 23930492--23930532 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23930482 CACTTGACAT
23930492 AGGGGC-ACACGCCCGTGTGGA
1 AGGGGCAACACGCCCGTGTGGA
23930513 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
23930533 ACCAATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGA
Found at i:23937104 original size:39 final size:39
Alignment explanation
Indices: 23937024--23937174 Score: 230
Period size: 39 Copynumber: 3.8 Consensus size: 39
23937014 TGGTAATCCT
* *
23937024 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCG
* ***
23937064 CACAATTGCCTTCGGGCTTAGCCCAGATATCATGGCTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
*
23937103 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
23937142 CACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCAC
23937175 TCGAACATTC
Statistics
Matches: 100, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 85 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
Found at i:23937145 original size:78 final size:79
Alignment explanation
Indices: 23937024--23937173 Score: 257
Period size: 78 Copynumber: 1.9 Consensus size: 79
23937014 TGGTAATCCT
23937024 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCA
1 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCA
23937089 GATATCATGGCTCG
66 GATATCATGGCTCG
* * * *
23937103 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCA
23937167 GATATCA
66 GATATCA
23937174 CTCGAACATT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
78 52 0.78
79 15 0.22
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (79 bp):
CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCA
GATATCATGGCTCG
Found at i:23941034 original size:3 final size:3
Alignment explanation
Indices: 23941026--23941095 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
23941016 ACCTACTTCT
23941026 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
23941074 TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
23941096 TATTATTATT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:23941100 original size:3 final size:3
Alignment explanation
Indices: 23941094--23941128 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
23941084 AATAATAATA
*
23941094 ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
23941129 CATTTTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:23943822 original size:39 final size:39
Alignment explanation
Indices: 23943778--23943930 Score: 261
Period size: 39 Copynumber: 3.9 Consensus size: 39
23943768 GTGCTGAGAT
* *
23943778 TGTATCCGGGTTAGAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
*
23943817 TGTATCCGGGATAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
23943856 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
* *
23943895 TGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
23943931 TGCTGGTAAT
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:23958941 original size:9 final size:9
Alignment explanation
Indices: 23958927--23958951 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23958917 TTTGTGATAT
23958927 TTTTGAGCC
1 TTTTGAGCC
23958936 TTTTGAGCC
1 TTTTGAGCC
23958945 TTTTGAG
1 TTTTGAG
23958952 TATCTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.16, G:0.24, T:0.48
Consensus pattern (9 bp):
TTTTGAGCC
Found at i:23962220 original size:40 final size:40
Alignment explanation
Indices: 23962137--23962228 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
23962127 TAGTGGCTAC
* * * **
23962137 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCAAAGGCATTCGTGCAAATCATGAT
* *
23962177 ATCCGGGCTAAGACCCAAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCAAAGGCATTCGTGCAAATCATGAT
*
23962217 ATCCGGGTTAAG
1 ATCCGGGCTAAG
23962229 TCCCGTAGGC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCAAAGGCATTCGTGCAAATCATGAT
Found at i:23981729 original size:40 final size:40
Alignment explanation
Indices: 23981649--23981788 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
23981639 CACAAACGCG
* * *
23981649 CTTC-GGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGC
1 CTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGC
*
23981688 CTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGC
1 CTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATTGC
** ** * *
23981728 CTTCGGGTCTTAATCCGGATA-AA-TTTTCAGCATAATTGT
1 CTTCGGGTCTTAGCCCGGATATAACTACT-AGCACAATTGC
*
23981767 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
23981789 CATTCAATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.41
40 47 0.57
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATTGC
Found at i:23984705 original size:18 final size:16
Alignment explanation
Indices: 23984681--23984758 Score: 75
Period size: 18 Copynumber: 4.5 Consensus size: 16
23984671 TCCTCCTATT
23984681 TTTTTATTTATTATATTA
1 TTTTTATTT-TTAT-TTA
* *
23984699 GTTTTATTTTATTTTTA
1 TTTTTATTTT-TATTTA
23984716 TTTTTATTTTTATTTTTA
1 TTTTTATTTTTA--TTTA
23984734 TTTTTATTTTTATTTCA
1 TTTTTATTTTTATTT-A
*
23984751 ATTTTATT
1 TTTTTATT
23984759 ATTTTGAAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
16 4 0.08
17 21 0.41
18 26 0.51
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.77
Consensus pattern (16 bp):
TTTTTATTTTTATTTA
Found at i:23984716 original size:6 final size:6
Alignment explanation
Indices: 23984681--23984748 Score: 95
Period size: 6 Copynumber: 11.5 Consensus size: 6
23984671 TCCTCCTATT
* *
23984681 TTTTTA TTTATTA -TATTA GTTTTA -TTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
23984728 TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTT
23984749 CAATTTTATT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
5 8 0.14
6 46 0.81
7 3 0.05
ACGTcount: A:0.19, C:0.00, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:23990036 original size:93 final size:93
Alignment explanation
Indices: 23989929--23990099 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
23989919 GCCCCTAAGT
* *
23989929 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23989994 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
23990022 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23990087 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23990100 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:23990096 original size:46 final size:46
Alignment explanation
Indices: 23989924--23990096 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
23989914 AACCCGCCCC
* * *
23989924 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
23989970 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
23990018 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
23990063 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23990097 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:23990553 original size:30 final size:30
Alignment explanation
Indices: 23990519--23990578 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23990509 ATTTAATACG
23990519 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
23990549 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
23990579 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:23997592 original size:93 final size:93
Alignment explanation
Indices: 23997485--23997655 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
23997475 GCCCCTAAGT
* *
23997485 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23997550 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
23997578 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23997643 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23997656 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:23997652 original size:46 final size:46
Alignment explanation
Indices: 23997480--23997652 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
23997470 AACCCGCCCC
* * *
23997480 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
23997526 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
23997574 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
23997619 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23997653 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:23998109 original size:30 final size:30
Alignment explanation
Indices: 23998075--23998134 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23998065 ATTTAATACG
23998075 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
23998105 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
23998135 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:24003923 original size:46 final size:46
Alignment explanation
Indices: 24003856--24004025 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
24003846 AACCCGCCCC
*
24003856 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
24003902 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
24003950 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
24003995 TAGGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
24004026 AGATGCTCAA
Statistics
Matches: 105, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 58 0.55
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:24003968 original size:93 final size:93
Alignment explanation
Indices: 24003861--24004031 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
24003851 GCCCCTAAGT
* *
24003861 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
24003926 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* *
24003954 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24004019 CGAGTTCAGATGC
66 CGAGTTCAGATGC
24004032 TCAACCGTCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:24004485 original size:30 final size:30
Alignment explanation
Indices: 24004451--24004510 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
24004441 ATTTAATACG
24004451 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
24004481 AACTTTTGCATAATTACACTTTTGTCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
24004511 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:24008540 original size:16 final size:14
Alignment explanation
Indices: 24008508--24008560 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
24008498 CGATGTCCTT
24008508 TTTGCATTCATGCA
1 TTTGCATTCATGCA
24008522 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
24008538 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
24008551 TTTGCATTCA
1 TTTGCATTCA
24008561 AAGTTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:24019308 original size:43 final size:43
Alignment explanation
Indices: 24019260--24019364 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
24019250 GATCCAAGAT
* *
24019260 GATTTGGCATATCTGTATTGTCAGAGAACAAATCGAAGAAACA
1 GATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAACA
*
24019303 GATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAATA
1 GATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAACA
24019346 GATTTGGCATCTCTGTATT
1 GATTTGGCATCTCTGTATT
24019365 CGACAGGGAG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAACA
Found at i:24019587 original size:132 final size:131
Alignment explanation
Indices: 24019303--24019626 Score: 468
Period size: 132 Copynumber: 2.5 Consensus size: 131
24019293 CGAAGAAACA
* * * *
24019303 GATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAATAGATTTGGCATCTCTGTATTCGA
1 GATTTGGCGTCTCTGTATTGTCAGAGAACAGATCGAAGAAACAGATTTGGCATCTCTGTATTCGA
24019368 CAGGGAGCAGATCAAAGACATAGCTGATTTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
66 CAGGGAGCAGATCAAAGACATAGCTGATTTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
24019433 T
131 T
* * * * *
24019434 GATTTAGCGTCTCTATTTTGTCAGAGAACAGATCGAAGATAGCAGATTTGGCATCTTTGTATTCG
1 GATTTGGCGTCTCTGTATTGTCAGAGAACAGATCGAAGA-AACAGATTTGGCATCTCTGTATTCG
* *
24019499 ACAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG
65 ACAGGGAGCAGATCAAAGACATAGCTGATTTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG
24019564 AT
130 AT
* * ** * * *
24019566 GATTTGGCGTCTTTGCATTGTCAGAGAGTAGATCGAAAACAACAAATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAACAGATCGAAGA-AACAGATTTGGCATCTCTGTA
24019627 CTATCAGAGA
Statistics
Matches: 168, Mismatches: 24, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
131 33 0.20
132 135 0.80
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (131 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAACAGATCGAAGAAACAGATTTGGCATCTCTGTATTCGA
CAGGGAGCAGATCAAAGACATAGCTGATTTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
T
Found at i:24019634 original size:44 final size:44
Alignment explanation
Indices: 24019567--24019670 Score: 127
Period size: 44 Copynumber: 2.4 Consensus size: 44
24019557 ATCTAAGATG
* * * *
24019567 ATTTGGCGTCTTTGCATTGTCAGAGAGTAGATCGAAAACAACAA
1 ATTTGGCGTCTCTGTACTATCAGAGAGTAGATCGAAAACAACAA
* * * *
24019611 ATTTGGCGTCTCTGTACTATCAGAGAGTAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTACTATCAGAGAGTAGATCGAAAACAACAA
*
24019655 ATTTGGCATCTCTGTA
1 ATTTGGCGTCTCTGTA
24019671 TTCGACAGGG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTACTATCAGAGAGTAGATCGAAAACAACAA
Found at i:24019636 original size:176 final size:176
Alignment explanation
Indices: 24019454--24019866 Score: 625
Period size: 176 Copynumber: 2.4 Consensus size: 176
24019444 CTCTATTTTG
* * *
24019454 TCAGAGAACAGATCGAAGATAGCAGATTTGGCATCTTTGTATTCGACAGGGAGCAGATCGAAGAC
1 TCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTCGACAGGGAGAAGATCGAAGAC
* *
24019519 ATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTTTGCAT
66 ATAGCTGATTTGGCTTTCACCTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTTGCAT
* *
24019584 TGTCAGAGAGTAGATCGAAA-ACAACAAATTTGGCGTCTCTGTACTA
131 TGTCAGAGAGCAGATC-AAAGACAACAAATTTGGCGTATCTGTACTA
* *
24019630 TCAGAGAGTAGATCGAAGATAGCAGATTTGGCATCTCTGTATTCGACAGGGAGTAGATCGAAGAC
1 TCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTCGACAGGGAGAAGATCGAAGAC
*
24019695 ATAGCTGATTTGGCTTTCACCTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTTGTAT
66 ATAGCTGATTTGGCTTTCACCTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTTGCAT
** * * *
24019760 TGTCAGAGAGCAGATCAAAGATGACAGATTTGGCGTATCTGTATTG
131 TGTCAGAGAGCAGATCAAAGACAACAAATTTGGCGTATCTGTACTA
* * *
24019806 TCAGAGAGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGTATTAG-CAGAGAGAAGATCGAA
1 TCAGAGAGCAGATCGAAGATAG-CAGATTTGGCATCTCTGTATTCGACAGGGAGAAGATCGAA
24019867 AATAACAGAT
Statistics
Matches: 216, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
175 18 0.08
176 198 0.92
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (176 bp):
TCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTCGACAGGGAGAAGATCGAAGAC
ATAGCTGATTTGGCTTTCACCTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTTGCAT
TGTCAGAGAGCAGATCAAAGACAACAAATTTGGCGTATCTGTACTA
Found at i:24019705 original size:47 final size:47
Alignment explanation
Indices: 24019587--24019708 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 47
24019577 TTTGCATTGT
* * * *
24019587 CAGAGAGTAGATCGAAAACA-A-CAAATTTGGCGTCTCTGTA--CTA
1 CAGAGAGTAGATCGAAGACATAGCAGATTTGGCATCTCTGTATTCGA
24019630 TCAGAGAGTAGATCGAAG--ATAGCAGATTTGGCATCTCTGTATTCGA
1 -CAGAGAGTAGATCGAAGACATAGCAGATTTGGCATCTCTGTATTCGA
* *
24019676 CAGGGAGTAGATCGAAGACATAGCTGATTTGGC
1 CAGAGAGTAGATCGAAGACATAGCAGATTTGGC
24019709 TTTCACCTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
42 1 0.02
43 1 0.02
44 33 0.50
45 16 0.24
46 2 0.03
47 13 0.20
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (47 bp):
CAGAGAGTAGATCGAAGACATAGCAGATTTGGCATCTCTGTATTCGA
Found at i:24019746 original size:88 final size:88
Alignment explanation
Indices: 24019478--24019760 Score: 303
Period size: 88 Copynumber: 3.2 Consensus size: 88
24019468 GAAGATAGCA
* *
24019478 GATTTGGCATCTTTGTATTCGACAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTTTGTATTCGACAGGGAGTAGATCGAAGACATAGCTGATTTGGCTTTCACCTGT
24019543 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * * * * ** * *
24019566 GATTTGGCGTCTTTGCATT-GTCAGAGAGTAGATCGAAAACA-A-CAAATTTGGC-GTC-TCTG-
1 GATTTGGCATCTTTGTATTCGACAGGGAGTAGATCGAAGACATAGCTGATTTGGCTTTCACCTGT
* * *
24019625 -TAC-TATCAGAGAGTAGATCGAAGAT
66 TTACGT-T--GA-AGCAAATCTAAGAT
*
24019650 AGCAGATTTGGCATCTCTGTATTCGACAGGGAGTAGATCGAAGACATAGCTGATTTGGCTTTCAC
1 ----GATTTGGCATCTTTGTATTCGACAGGGAGTAGATCGAAGACATAGCTGATTTGGCTTTCAC
24019715 CTGTTTACGTTGAAGCAAATCTAAGAT
62 CTGTTTACGTTGAAGCAAATCTAAGAT
24019742 GATTTGGCATCTTTGTATT
1 GATTTGGCATCTTTGTATT
24019761 GTCAGAGAGC
Statistics
Matches: 151, Mismatches: 28, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
80 1 0.01
81 4 0.03
83 4 0.03
84 13 0.09
85 8 0.05
86 1 0.01
87 18 0.12
88 51 0.34
89 19 0.13
90 1 0.01
91 8 0.05
92 13 0.09
93 5 0.03
95 4 0.03
96 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (88 bp):
GATTTGGCATCTTTGTATTCGACAGGGAGTAGATCGAAGACATAGCTGATTTGGCTTTCACCTGT
TTACGTTGAAGCAAATCTAAGAT
Found at i:24019803 original size:44 final size:44
Alignment explanation
Indices: 24019755--24019877 Score: 178
Period size: 44 Copynumber: 2.8 Consensus size: 44
24019745 TTGGCATCTT
24019755 TGTATTGTCAGAGAGCAGATCAAAGATGACAGATTTGGCGTATC
1 TGTATTGTCAGAGAGCAGATCAAAGATGACAGATTTGGCGTATC
* *
24019799 TGTATTGTCAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTC
1 TGTATTGTCAGAGAGCAGATCAAAGATGACAGATTTGGCGTATC
* *
24019843 TGTATTAG-CAGAGAGAAGATCGAAA-ATAACAGATT
1 TGTATT-GTCAGAGAGCAGATC-AAAGATGACAGATT
24019878 GTTGTTCTTG
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
44 69 0.96
45 3 0.04
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (44 bp):
TGTATTGTCAGAGAGCAGATCAAAGATGACAGATTTGGCGTATC
Found at i:24020997 original size:24 final size:25
Alignment explanation
Indices: 24020940--24021079 Score: 71
Period size: 24 Copynumber: 5.4 Consensus size: 25
24020930 AAAAAAACTT
*
24020940 TATTTA-TATATTATTATTTACCTA
1 TATTTATTATATTATTATTTACATA
24020964 TATCTATATTATATT-TTA-TTACATAA
1 TAT-T-TATTATATTATTATTTACAT-A
* *
24020990 TATTTATTATACTA-T-TTTATAT-
1 TATTTATTATATTATTATTTACATA
*
24021012 TTTATTATTATATTATTTTACACTTTA-ATA
1 TAT-TTATTATATTA--TT--A-TTTACATA
24021042 TATGTTATTTTATATTATTA-TTACATCA
1 TAT-TTA--TTATATTATTATTTACAT-A
24021070 TATTTATTAT
1 TATTTATTAT
24021080 GTATTTTAGT
Statistics
Matches: 90, Mismatches: 7, Indels: 37
0.67 0.05 0.28
Matches are distributed among these distances:
22 2 0.02
23 10 0.11
24 17 0.19
25 11 0.12
26 13 0.14
27 11 0.12
28 5 0.06
29 2 0.02
30 11 0.12
32 8 0.09
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (25 bp):
TATTTATTATATTATTATTTACATA
Found at i:24021023 original size:23 final size:23
Alignment explanation
Indices: 24020993--24021064 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
24020983 TACATAATAT
*
24020993 TTATTATACTATTTTATATTTTA
1 TTATTATATTATTTTATATTTTA
* *
24021016 TTATTATATTATTTTACACTTTA
1 TTATTATATTATTTTATATTTTA
* *
24021039 ATA-TATGTTATTTTATATTATTA
1 TTATTATATTATTTTATATT-TTA
24021062 TTA
1 TTA
24021065 CATCATATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 13 0.32
23 27 0.68
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (23 bp):
TTATTATATTATTTTATATTTTA
Found at i:24021112 original size:35 final size:35
Alignment explanation
Indices: 24021013--24021112 Score: 88
Period size: 34 Copynumber: 2.9 Consensus size: 35
24021003 ATTTTATATT
*
24021013 TTATTATTATATTATT-TTACA-CTTTAA-TA-TATG
1 TTATT-TTATATTATTATTACATC-ATAATTATTATG
*
24021046 TTATTTTATATTATTATTACATCATATTTATTATG
1 TTATTTTATATTATTATTACATCATAATTATTATG
24021081 -TATTTTAGTA-TATTATTATCTAT-ATAATTATT
1 TTATTTTA-TATTATTATTA-C-ATCATAATTATT
24021113 TTGATAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
32 10 0.18
33 12 0.21
34 18 0.32
35 15 0.26
36 2 0.04
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (35 bp):
TTATTTTATATTATTATTACATCATAATTATTATG
Found at i:24031517 original size:32 final size:33
Alignment explanation
Indices: 24031473--24031577 Score: 127
Period size: 32 Copynumber: 3.4 Consensus size: 33
24031463 AATATTAATC
24031473 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
* *
24031506 TGGGCC-TAG-CCCATATCAGTATC--A--AT-C
1 TGGGCCATAGCCCCTTA-CAGTATCAGAGTATAT
24031533 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
24031566 TGGGCC-TAGCCC
1 TGGGCCATAGCCC
24031578 ATATCAGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
27 6 0.10
28 12 0.20
29 5 0.08
30 2 0.03
31 5 0.08
32 18 0.30
33 12 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (33 bp):
TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
Found at i:24031523 original size:60 final size:60
Alignment explanation
Indices: 24031452--24031754 Score: 455
Period size: 60 Copynumber: 5.2 Consensus size: 60
24031442 AACTGAGCCT
* *
24031452 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
24031512 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
*
24031572 TAGCCCATATCAGTATCTATCT--G-----GCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
24031625 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
* *
24031685 TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA--AGTC-GAGATATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCC-CTTACAGTA-TCAGAG-TATATTGGGCC
*
24031745 TTGCCCATAT
1 TAGCCCATAT
24031755 TAACACAGTT
Statistics
Matches: 226, Mismatches: 7, Indels: 20
0.89 0.03 0.08
Matches are distributed among these distances:
53 51 0.23
55 1 0.00
58 1 0.00
59 4 0.02
60 164 0.73
61 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (60 bp):
TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
Found at i:24031639 original size:32 final size:32
Alignment explanation
Indices: 24031603--24031702 Score: 122
Period size: 32 Copynumber: 3.2 Consensus size: 32
24031593 TGGCCCCTTA
24031603 CAGTATCAGAGTATATTGGGCCTAGCCCATAT
1 CAGTATCAGAGTATATTGGGCCTAGCCCATAT
* *
24031635 CAGTATC--A--AT-CTGGGCCATAGCCCCT-T
1 CAGTATCAGAGTATATTGGGCC-TAGCCCATAT
24031662 ACAGTATCAGAGTATATTGGGCCTAGCCCATAT
1 -CAGTATCAGAGTATATTGGGCCTAGCCCATAT
24031695 CAGTATCA
1 CAGTATCA
24031703 ATCTGGGCCG
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
27 7 0.12
28 16 0.29
30 2 0.04
32 24 0.43
33 7 0.12
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (32 bp):
CAGTATCAGAGTATATTGGGCCTAGCCCATAT
Found at i:24031657 original size:113 final size:113
Alignment explanation
Indices: 24031482--24031708 Score: 445
Period size: 113 Copynumber: 2.0 Consensus size: 113
24031472 CTGGGCCATA
24031482 GCCCCTTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCC
1 GCCCCTTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCC
*
24031547 TTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCTATCTG
66 TTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTG
24031595 GCCCCTTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCC
1 GCCCCTTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCC
24031660 TTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTG
66 TTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTG
24031708 G
1 G
24031709 GCCGTAGCCC
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (113 bp):
GCCCCTTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCC
TTACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTG
Found at i:24040697 original size:40 final size:40
Alignment explanation
Indices: 24040589--24040798 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24040579 CGGGATTTAA
* * * * *
24040589 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24040629 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24040669 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24040709 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24040749 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24040789 CCGGATATAT
1 CCGGATATAT
24040799 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24050981 original size:40 final size:40
Alignment explanation
Indices: 24050873--24051082 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24050863 CGGGATTTAA
* * * * *
24050873 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24050913 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24050953 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24050993 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24051033 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24051073 CCGGATATAT
1 CCGGATATAT
24051083 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24059111 original size:40 final size:40
Alignment explanation
Indices: 24059003--24059212 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24058993 CGGGATTTAA
* * * * *
24059003 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24059043 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24059083 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24059123 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24059163 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24059203 CCGGATATAT
1 CCGGATATAT
24059213 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24069026 original size:39 final size:39
Alignment explanation
Indices: 24068972--24069126 Score: 247
Period size: 39 Copynumber: 3.9 Consensus size: 39
24068962 TGTGAATGAA
24068972 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
24069011 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** * *
24069050 TGTGCGAGCTATGATATCCGAGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24069089 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
24069127 TTTGAGCGGG
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.91
40 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24076196 original size:39 final size:39
Alignment explanation
Indices: 24076142--24076296 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
24076132 TGTGAATGAA
24076142 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
24076181 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
24076220 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24076259 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
24076297 TTTGAGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 99 0.91
40 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24076320 original size:40 final size:39
Alignment explanation
Indices: 24076142--24076334 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
24076132 TGTGAATGAA
* *
24076142 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24076181 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
24076220 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
24076259 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * *
24076299 TGAGCGGGTTACT-ATAACCGGGCTACGTCCCGAAGG
1 TGTGCGAGTTA-TGATATCCGGGCTAAG-CCCGAAGG
24076335 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 99 0.71
40 39 0.28
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24078992 original size:78 final size:80
Alignment explanation
Indices: 24078849--24079029 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 80
24078839 TCGAATGATG
* * * *
24078849 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCAAAGTGACTAAATCCGGACTAAGATCCAAAGGAATTT
24078914 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
24078928 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCAAAGGAAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCAAAGTGACTAAATCCGGACTAAGAT-CCAAAGGAAT
24078990 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
24079007 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
24079030 TTGAACGAGT
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 49 0.56
79 26 0.30
80 11 0.13
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCAAAGTGACTAAATCCGGACTAAGATCCAAAGGAATTT
GTGCGAGTTACTATA
Found at i:24079039 original size:40 final size:39
Alignment explanation
Indices: 24078850--24079032 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
24078840 CGAATGATGT
* *
24078850 CCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
24078889 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
24078930 CCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
24078967 TCCGGGTTAAGTCCCAAAGGAATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24079008 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24079033 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 23 0.19
39 17 0.14
40 68 0.58
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24080721 original size:29 final size:31
Alignment explanation
Indices: 24080673--24080730 Score: 102
Period size: 29 Copynumber: 1.9 Consensus size: 31
24080663 AGATTACAAG
24080673 ATCATATCTTCAAGATTGCATATCATATCAT
1 ATCATATCTTCAAGATTGCATATCATATCAT
24080704 ATCATATC-T-AAGATTGCATATCATATC
1 ATCATATCTTCAAGATTGCATATCATATC
24080731 TAAGATTGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 18 0.67
30 1 0.04
31 8 0.30
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (31 bp):
ATCATATCTTCAAGATTGCATATCATATCAT
Found at i:24080725 original size:19 final size:19
Alignment explanation
Indices: 24080701--24080744 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
24080691 CATATCATAT
24080701 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
24080720 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
24080739 CATATC
1 CATATC
24080745 CTTAAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:24087825 original size:17 final size:18
Alignment explanation
Indices: 24087803--24087844 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
24087793 GTAAAAACAT
24087803 AAAATA-AAAAATTAAAA
1 AAAATATAAAAATTAAAA
* *
24087820 AAAATATATAAGTTAAAA
1 AAAATATAAAAATTAAAA
*
24087838 AATATAT
1 AAAATAT
24087845 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
AAAATATAAAAATTAAAA
Found at i:24087862 original size:26 final size:28
Alignment explanation
Indices: 24087819--24087877 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
24087809 AAAAATTAAA
*
24087819 AAAAATATATAAGTTAAAAA-ATATATTT
1 AAAAATATATAAGATAAAAAGATAT-TTT
*
24087847 AAAAATA-A-AAGATAAAAAGATGTTTT
1 AAAAATATATAAGATAAAAAGATATTTT
24087873 AAAAA
1 AAAAA
24087878 CTATTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 17 0.61
27 4 0.14
28 7 0.25
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAAATATATAAGATAAAAAGATATTTT
Found at i:24093733 original size:3 final size:3
Alignment explanation
Indices: 24093665--24093717 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
24093655 TTAGTAACTC
* * * *
24093665 TAT TAT TTT TAC TAT TAT TAT TAT TAT GAA TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24093712 TAT TAT
1 TAT TAT
24093718 CAGCGTTAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:24093785 original size:15 final size:14
Alignment explanation
Indices: 24093765--24093819 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
24093755 TTTCTCTGTT
24093765 TTATTACTATTATTA
1 TTATTAC-ATTATTA
24093780 TTATTAACATTATTA
1 TTATT-ACATTATTA
*
24093795 CTATTA-ATT-TTA
1 TTATTACATTATTA
24093807 TTTATTACTATTA
1 -TTATTAC-ATTA
24093820 CCTTTTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
12 3 0.09
13 8 0.24
14 1 0.03
15 19 0.58
16 2 0.06
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (14 bp):
TTATTACATTATTA
Found at i:24093830 original size:19 final size:18
Alignment explanation
Indices: 24093788--24093835 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
24093778 TATTATTAAC
24093788 ATTATTACTATTAATTTT
1 ATTATTACTATTAATTTT
*
24093806 ATTTATTACTATTACCTTTT
1 A-TTATTACTATTA-ATTTT
*
24093826 ATTATCACTA
1 ATTATTACTA
24093836 CTACTATTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 1 0.04
19 20 0.77
20 5 0.19
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTATTACTATTAATTTT
Found at i:24093948 original size:3 final size:3
Alignment explanation
Indices: 24093940--24094294 Score: 241
Period size: 3 Copynumber: 118.0 Consensus size: 3
24093930 TATCTTAATG
24093940 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
24093988 TAT TAT TAT TAT TAT TAT TAC TAT TGT TGT T-T TAC TAT TAT TAT GTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * * *
24094036 T-T TAT TAT CAT TAAT TA- TATT TAT TAC TAC TAT TAT TTT TGT TAA
1 TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
24094081 CA- TAT TAT T-T CT-T TTT TAC CA- TAT TAT TAT T-T CCTAT TCT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT
* * * *
24094124 ATAT TAT TAT TGT TAT TAT CAT ATAT TAT TAT TAAT GTAC TAT TAT TTT
1 -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT -TAT TAT TAT TAT
* * * * *
24094173 CTAT TAT TAT TAT TAC TAA TAT CAC TAT TAT TAT CAT T-T ATAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
*
24094219 TAT TA- TAT TAT TAT TGT TAT TAT TAT TA- TACCT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT
* * *
24094263 TAC TAT T-G TAT TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24094295 ATTTTCTTTC
Statistics
Matches: 280, Mismatches: 46, Indels: 52
0.74 0.12 0.14
Matches are distributed among these distances:
2 19 0.07
3 238 0.85
4 20 0.07
5 3 0.01
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:24094261 original size:44 final size:43
Alignment explanation
Indices: 24094209--24094291 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 43
24094199 ATTATTATCA
* **
24094209 TTTATATTATTATTATAT-TATTATTGTTATTATTATTATACCT
1 TTTATATTATTACTAT-TGTATTATTACTATTATTATTATACCT
24094252 TTTATTATTATTACTATTGTATTATTACTATTATTATTAT
1 TTTA-TATTATTACTATTGTATTATTACTATTATTATTAT
24094292 TATATTTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
43 5 0.14
44 30 0.86
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (43 bp):
TTTATATTATTACTATTGTATTATTACTATTATTATTATACCT
Found at i:24094582 original size:3 final size:3
Alignment explanation
Indices: 24094574--24094629 Score: 58
Period size: 3 Copynumber: 18.7 Consensus size: 3
24094564 TTCTATTCCC
* * * * * *
24094574 ATT ATT ATT ATT ATT ATT ACT AAT ATT AAT ATT CTT ATT ATG ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24094622 ATT ATT AT
1 ATT ATT AT
24094630 CCTTATTGAC
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:24094768 original size:25 final size:24
Alignment explanation
Indices: 24094739--24094790 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
24094729 CCTTTTTTAC
*
24094739 TTATTCTTATTATTCTTATTTATTT
1 TTATTCTTATCATTCTTA-TTATTT
* *
24094764 TTATTGTTATCATTTTTATTATTT
1 TTATTCTTATCATTCTTATTATTT
24094788 TTA
1 TTA
24094791 CCTATTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (24 bp):
TTATTCTTATCATTCTTATTATTT
Found at i:24094787 original size:9 final size:9
Alignment explanation
Indices: 24094732--24094790 Score: 50
Period size: 9 Copynumber: 6.7 Consensus size: 9
24094722 TAAGTTTCCT
24094732 TTTTTACTTA
1 TTTTTA-TTA
*
24094742 TTCTTATTA
1 TTTTTATTA
*
24094751 TTCTTATT-
1 TTTTTATTA
*
24094759 TATTT-TTA
1 TTTTTATTA
* *
24094767 TTGTTATCA
1 TTTTTATTA
24094776 TTTTTATTA
1 TTTTTATTA
24094785 TTTTTA
1 TTTTTA
24094791 CCTATTATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
7 2 0.05
8 6 0.15
9 26 0.67
10 5 0.13
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTTATTA
Found at i:24097149 original size:30 final size:30
Alignment explanation
Indices: 24097108--24097166 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
24097098 ATGGGATTGA
* * *
24097108 GAAGTCTAGATATCTCGTTTAGGAGCTTGT
1 GAAGACTAGATATCGCCTTTAGGAGCTTGT
24097138 GAAGACTAGATATCGCCTTTAGGAGCTTG
1 GAAGACTAGATATCGCCTTTAGGAGCTTG
24097167 GGATTGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (30 bp):
GAAGACTAGATATCGCCTTTAGGAGCTTGT
Found at i:24102969 original size:39 final size:39
Alignment explanation
Indices: 24102888--24103050 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
24102878 TATGGTAACC
* *
24102888 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
24102928 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24102967 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24103006 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
24103045 CGCACA
1 CGCACA
24103051 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:24110896 original size:39 final size:39
Alignment explanation
Indices: 24110815--24110977 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
24110805 TATGGTAACC
* *
24110815 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
24110855 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24110894 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24110933 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
24110972 CGCACA
1 CGCACA
24110978 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:24114203 original size:19 final size:19
Alignment explanation
Indices: 24114156--24114234 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
24114146 AATCTTTACG
24114156 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
24114175 GATA--CAATCTTAGACAT
1 GATATGCAATCTTAGATAT
24114192 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24114211 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
24114232 GAT
1 GAT
24114235 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24120209 original size:28 final size:28
Alignment explanation
Indices: 24120140--24120240 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
24120130 GACAAGATTG
* * * *
24120140 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
24120170 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
24120198 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
24120227 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24120241 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:24120234 original size:29 final size:28
Alignment explanation
Indices: 24120169--24120240 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
24120159 AAAATTGTAC
*
24120169 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
24120197 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
24120226 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24120241 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:24123249 original size:7 final size:7
Alignment explanation
Indices: 24123239--24123299 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
24123229 AAAAAAAAGG
24123239 GAAAAAA
1 GAAAAAA
*
24123246 GAAAATA
1 GAAAAAA
*
24123253 -AAAAGA
1 GAAAAAA
24123259 GAAAAAA
1 GAAAAAA
24123266 -ATAAAAA
1 GA-AAAAA
*
24123273 -AAAAGA
1 GAAAAAA
24123279 GAAAAAA
1 GAAAAAA
24123286 GAAAAAA
1 GAAAAAA
24123293 GAAAAAA
1 GAAAAAA
24123300 TAGAGAAGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
6 10 0.22
7 36 0.78
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (7 bp):
GAAAAAA
Found at i:24123257 original size:20 final size:19
Alignment explanation
Indices: 24123228--24123292 Score: 94
Period size: 19 Copynumber: 3.3 Consensus size: 19
24123218 CTTCTATTTC
*
24123228 AAAAAAAAAGGGAAAAAAG
1 AAAAAAAAAGAGAAAAAAG
*
24123247 AAAATAAAAAGAGAAAAAAAT
1 AAAA-AAAAAGAG-AAAAAAG
24123268 AAAAAAAAAGAGAAAAAAG
1 AAAAAAAAAGAGAAAAAAG
24123287 AAAAAA
1 AAAAAA
24123293 GAAAAAATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
19 16 0.39
20 15 0.37
21 10 0.24
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAGAGAAAAAAG
Found at i:24123264 original size:9 final size:9
Alignment explanation
Indices: 24123231--24123306 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
24123221 CTATTTCAAA
*
24123231 AAAAAAGGG
1 AAAAAAGAG
*
24123240 AAAAAAGAAA
1 AAAAAAG-AG
24123250 ATAAAAAGAG
1 A-AAAAAGAG
*
24123260 AAAAAA-ATA
1 AAAAAAGA-G
*
24123269 AAAAAAAAG
1 AAAAAAGAG
24123278 AGAAAAA-AG
1 A-AAAAAGAG
24123287 AAAAAAGA-
1 AAAAAAGAG
24123295 AAAAATAGAG
1 AAAAA-AGAG
24123305 AA
1 AA
24123307 GCCAAGGTGA
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
8 11 0.20
9 26 0.48
10 11 0.20
11 6 0.11
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (9 bp):
AAAAAAGAG
Found at i:24123266 original size:16 final size:15
Alignment explanation
Indices: 24123247--24123299 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
24123237 GGGAAAAAAG
24123247 AAAATAAAAAGAGAAA
1 AAAATAAAAA-AGAAA
24123263 AAAATAAAAAAAAAGAGAA
1 AAAAT---AAAAAAGA-AA
*
24123282 AAAAGAAAAAAGAAA
1 AAAATAAAAAAGAAA
24123297 AAA
1 AAA
24123300 TAGAGAAGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
15 5 0.16
16 13 0.41
18 3 0.09
19 11 0.34
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (15 bp):
AAAATAAAAAAGAAA
Found at i:24124511 original size:132 final size:131
Alignment explanation
Indices: 24124346--24124692 Score: 518
Period size: 132 Copynumber: 2.6 Consensus size: 131
24124336 GAAGACAACA
24124346 GATTTGGCATATCTGTATTGGCAGAGAGCAGATCGAAGATGACTAATTTGGCATCTCTGTATTTG
1 GATTTGGCATATCTGTATTGGCAGAGAGCAGATCGAAGATGAC-AATTTGGCATCTCTGTATTTG
* * * * *
24124411 GCGGAGAGAAGATCGAAGACATAGCTTATTTGGCTTTCATGTGTTTACGTTGAAGTAAATCTAAG
65 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAATCTAAG
24124476 AT
130 AT
* * * * *
24124478 GATTTGGCATTTCTGTATTGGCAGAGAGTAGATCAAAGATGACAGATTTGACATCTCTGTATTCG
1 GATTTGGCATATCTGTATTGGCAGAGAGCAGATCGAAGATGACA-ATTTGGCATCTCTGTATTTG
*
24124543 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
65 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAATCTAAG
24124608 AT
130 AT
*
24124610 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ATCAAATTTGGCATCTCTGTA-TT
1 GATTTGGCATATCTGTATTGGCAGAGAGCAGATCGAAGATGA-C-AATTTGGCATCTCTGTATTT
* *
24124673 GGCAGAGAGCAGATCAAAGA
64 GGCGGAGAGCAGATCGAAGA
24124693 TGACAGATTT
Statistics
Matches: 194, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
131 21 0.11
132 172 0.89
133 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (131 bp):
GATTTGGCATATCTGTATTGGCAGAGAGCAGATCGAAGATGACAATTTGGCATCTCTGTATTTGG
CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAATCTAAGA
T
Found at i:24124661 original size:176 final size:176
Alignment explanation
Indices: 24124479--24124912 Score: 692
Period size: 176 Copynumber: 2.5 Consensus size: 176
24124469 ATCTAAGATG
* * *
24124479 ATTTGGCATTTCTGTATTGGCAGAGAGTAGATCAAAGATGACAGATTTGACATCTCTGTATTCGG
1 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGG
*
24124544 CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGA
66 CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGA
* *
24124609 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ATCAA
131 TGATTTGGAATCTCTGTATTGGCAGAGAGCAAATCGAAGATAAT-AA
24124655 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGG
1 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGG
24124720 CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGA
66 CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGA
* *
24124785 TGATTTGGAATCTCTGTATTGGCAGAGAGCAAATGGAAGATAATAG
131 TGATTTGGAATCTCTGTATTGGCAGAGAGCAAATCGAAGATAATAA
* * ** * * * *
24124831 ATTTGACATCTCTGTATTGGCAGAGAGCAAATTGAAGATAATAGATTTGGCGTATCTGTATT-GG
1 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGG
*
24124895 CAGAGAGCAGATCGAAGA
66 CGGAGAGCAGATCGAAGA
24124913 TAGAAGATTT
Statistics
Matches: 240, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
175 19 0.08
176 219 0.91
177 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (176 bp):
ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGG
CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGA
TGATTTGGAATCTCTGTATTGGCAGAGAGCAAATCGAAGATAATAA
Found at i:24124843 original size:308 final size:307
Alignment explanation
Indices: 24124297--24124868 Score: 894
Period size: 308 Copynumber: 1.9 Consensus size: 307
24124287 AAGCAGATCC
* *
24124297 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGACAACAGATTTGGCATATCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAACAAATTTGGCATATCTGT
* *
24124362 ATTGGCAGAGAGCAGATCGAAGATGACTAATTTGGCATCTCTGTATTTGGCGGAGAGAAGATCGA
66 ATTGGCAGAGAGCAGATCAAAGATGACTAATTTGGCATCTCTGTATTCGGCGGAGAGAAGATCGA
* * * * * * *
24124427 AGACATAGCTTATTTGGCTTTCATGTGTTTACGTTGAAGTAAATCTAAGATGATTTGGCATTTCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGAATCTCT
* * * * *
24124492 GTATTGGCAGAGAGTAGATCAAAGATGACAGATTTGACATCTCTGTATTCGGCGGAGAGCAGATC
196 GTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATT-GGCAGAGAGCAAATC
24124557 GAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
260 GAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
* * *
24124605 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATATCAAATTTGGCATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAACAAATTTGGCATATCTGT
*
24124670 ATTGGCAGAGAGCAGATCAAAGATGAC-AGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCG
66 ATTGGCAGAGAGCAGATCAAAGATGACTA-ATTTGGCATCTCTGTATTCGGCGGAGAGAAGATCG
*
24124734 AAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGAATCTC
130 AAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGAATCTC
** * *
24124799 TGTATTGGCAGAGAGCAAATGGAAGATAATAGATTTGACATCTCTGTATTGGCAGAGAGCAAATT
195 TGTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATTGGCAGAGAGCAAATC
24124864 GAAGA
260 GAAGA
24124869 TAATAGATTT
Statistics
Matches: 238, Mismatches: 25, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
307 18 0.08
308 220 0.92
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (307 bp):
AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAACAAATTTGGCATATCTGT
ATTGGCAGAGAGCAGATCAAAGATGACTAATTTGGCATCTCTGTATTCGGCGGAGAGAAGATCGA
AGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGAATCTCT
GTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATTGGCAGAGAGCAAATCG
AAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
Found at i:24124924 original size:308 final size:305
Alignment explanation
Indices: 24124297--24124977 Score: 840
Period size: 308 Copynumber: 2.2 Consensus size: 305
24124287 AAGCAGATCC
* * * *
24124297 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGACAACAGATTTGGCATATCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAAATTTGGCATCTCTGT
* *
24124362 ATTGGCAGAGAGCAGATCGAAGATGACTAATTTGGCATCTCTGTATTTGGCGGAGAGAAGATCGA
66 ATTGGCAGAGAGCAGATCAAAGATGACTAATTTGGCATCTCTGTATTCGGCGGAGAGAAGATCGA
* * * * * * *
24124427 AGACATAGCTTATTTGGCTTTCATGTGTTTACGTTGAAGTAAATCTAAGATGATTTGGCATTTCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGAATCTCT
* * * * *
24124492 GTATTGGCAGAGAGTAGATCAAAGATGACAGATTTGACATCTCTGTATTCGGCGGAGAGCAGATC
196 GTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATTCGGCAGAGAGCAAATC
* * ** *
24124557 GAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
261 GAAGAAATA-C-GATTTGGCGT-CACGTGTTTACGCAGAAGCAAGTCG
*
24124605 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATATCAAATTTGGCATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAAATTTGGCATCTCTGT
*
24124670 ATTGGCAGAGAGCAGATCAAAGATGAC-AGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCG
66 ATTGGCAGAGAGCAGATCAAAGATGACTA-ATTTGGCATCTCTGTATTCGGCGGAGAGAAGATCG
*
24124734 AAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGAATCTC
130 AAGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGAATCTC
** *
24124799 TGTATTGGCAGAGAGCAAATGGAAGATAATAGATTTGACATCTCTGTATT-GGCAGAGAGCAAAT
195 TGTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATTCGGCAGAGAGCAAAT
* *
24124863 TGAAGATAATA-GATTTGGCGT-ATC-TGTATT-GGCAGAGAGC-AGATCG
260 CGAAGA-AATACGATTTGGCGTCA-CGTGT-TTACGCAGA-AGCAAG-TCG
* * * *
24124909 AAGATAGAAGATTTGGCGTCTCTGTATTGTCAGAGAGCA-AGTTGAAGATAGCAGAA-TTGGCAT
1 AAGAT----GATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATAACA-AATTTGGCAT
*
24124972 CCCTGT
60 CTCTGT
24124978 GTTTACAGGG
Statistics
Matches: 325, Mismatches: 36, Indels: 24
0.84 0.09 0.06
Matches are distributed among these distances:
303 9 0.03
304 13 0.04
305 9 0.03
307 19 0.06
308 273 0.84
309 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (305 bp):
AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAAATTTGGCATCTCTGT
ATTGGCAGAGAGCAGATCAAAGATGACTAATTTGGCATCTCTGTATTCGGCGGAGAGAAGATCGA
AGACATAGCTGATTTGGCTTCCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGAATCTCT
GTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATTCGGCAGAGAGCAAATC
GAAGAAATACGATTTGGCGTCACGTGTTTACGCAGAAGCAAGTCG
Found at i:24124946 original size:44 final size:44
Alignment explanation
Indices: 24124302--24125000 Score: 405
Period size: 44 Copynumber: 15.9 Consensus size: 44
24124292 GATCCAAGAT
* *
24124302 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGACA-ACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
*
24124346 GATTTGGCATATCTGTATTGGCAGAGAGCAGATCGAAGAT-GACTA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA--A
* * **
24124391 -ATTTGGCATCTCTGTATTTGGCGGAGAGAAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTA-TTGGCAGAGAGCAGATCGAAG--ATAGAA
* * * ** * * * *
24124437 TATTTGGC-TTTCATGTGTTTAC-GTTGAAGTAAATCTAAGAT----
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATAGAA
* * *
24124478 GATTTGGCATTTCTGTATTGGCAGAGAGTAGATCAAAGAT-GACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
* * **
24124522 GATTTGACATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAGAA
* * * ** *
24124569 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAGAA
*
24124610 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATATCAA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-GAA
*
24124655 -ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGAT-GACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
* **
24124698 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAGAA
* * * *
24124745 GATTTGGCTTCCACGTGT-TT-ACATTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATTGGCA--GAGAGCAGA-TCGAAGATAGAA
* * *
24124786 GATTTGGAATCTCTGTATTGGCAGAGAGCAAATGGAAGATA-ATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
* * *
24124830 GATTTGACATCTCTGTATTGGCAGAGAGCAAATTGAAGATA-ATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
* *
24124874 GATTTGGCGTATCTGTATTGGCAGAGAGCAGATCGAAGATAGAA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGAA
* * * *
24124918 GATTTGGCGTCTCTGTATTGTCAGAGAGCA-AGTTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATAGAA
* * * ** * *
24124962 GAATTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
24125001 CATAGCAGAT
Statistics
Matches: 519, Mismatches: 83, Indels: 106
0.73 0.12 0.15
Matches are distributed among these distances:
39 11 0.02
40 41 0.08
41 35 0.07
42 6 0.01
43 2 0.00
44 270 0.52
45 62 0.12
46 10 0.02
47 60 0.12
48 16 0.03
49 6 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGAA
Found at i:24125023 original size:46 final size:47
Alignment explanation
Indices: 24124956--24125047 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 47
24124946 CAAGTTGAAG
* * *
24124956 ATAGCAGAATTGGCATCCCTGTGTTTACAGGGAA-CAGATCGAAGAC
1 ATAGCAGAATTGACATCCCTGTGCTTACAGCGAAGCAGATCGAAGAC
* * *
24125002 ATAGCAG-ATCTGACATTCCTGTGCTTATAGCGAAGCAGATTGAAGA
1 ATAGCAGAAT-TGACATCCCTGTGCTTACAGCGAAGCAGATCGAAGA
24125048 TTTCAGCATG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.05
46 26 0.68
47 10 0.26
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (47 bp):
ATAGCAGAATTGACATCCCTGTGCTTACAGCGAAGCAGATCGAAGAC
Found at i:24125251 original size:45 final size:46
Alignment explanation
Indices: 24125187--24125369 Score: 189
Period size: 45 Copynumber: 4.1 Consensus size: 46
24125177 CCAAGCTGAT
* * *
24125187 AGATTTGGCATCTTTGTATTAAACGAGGAGCAAATCAG-AGATAAC
1 AGATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAGAAGATAAC
* * * *
24125232 AGATTTGGCATATCTGTATTAGAC-AGAGAACAGAT-TGAAGA-AGC
1 AGATTTGGCATCTCTGTATTAGACGAG-GAGCAGATCAGAAGATAAC
* * *
24125276 AAATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAAC
1 AGATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAGAAGATAAC
* * * *
24125321 AGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCA-AAGATAGC
1 AGATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAGAAGATAAC
24125366 AGAT
1 AGAT
24125370 ATCGCCTTCC
Statistics
Matches: 116, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
44 38 0.33
45 78 0.67
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (46 bp):
AGATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAGAAGATAAC
Found at i:24125292 original size:44 final size:45
Alignment explanation
Indices: 24125225--24125343 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 45
24125215 AGCAAATCAG
* * * *
24125225 AGATAACAGATTTGGCATATCTGTATTAGACAGAGAACAGATTGA
1 AGATAACAAATTTGGCGTCTCTGTATTAGACAGAGAACAGATCGA
* * * *
24125270 AGA-AGCAAATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGA
1 AGATAACAAATTTGGCGTCTCTGTATTAGACAGAGAACAGATCGA
*
24125314 AGATAACAGATTTGGCGTCTCTGTATTAGA
1 AGATAACAAATTTGGCGTCTCTGTATTAGA
24125344 TGGGGAGCAG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 36 0.57
45 27 0.43
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (45 bp):
AGATAACAAATTTGGCGTCTCTGTATTAGACAGAGAACAGATCGA
Found at i:24125735 original size:19 final size:19
Alignment explanation
Indices: 24125711--24125786 Score: 107
Period size: 19 Copynumber: 3.8 Consensus size: 19
24125701 AATCTTTAAG
24125711 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24125730 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24125749 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
24125770 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
24125787 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
19 32 0.62
20 3 0.06
21 9 0.17
22 8 0.15
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24128054 original size:66 final size:66
Alignment explanation
Indices: 24127892--24128070 Score: 200
Period size: 66 Copynumber: 2.7 Consensus size: 66
24127882 GTTTAAGAAC
* * * ** * *
24127892 TTGAGAAGACCTGATATCTTGTTCAGGAGTTTGTAAAGACTCAATATCTCGTTCAGGATCTTGGG
1 TTGAGAAGACATGATATCTTGTTCAGGAGCTTGTGAAGACTTGATATCACGTTCAGGAGCTTGGG
24127957 A
66 A
* ** * *
24127958 TGGAGAAGACCA-GATATCTCATTCAAGAGCTTGTGAAGACTTGATATCACGTTTAGGAGCTTGG
1 TTGAGAAGA-CATGATATCTTGTTCAGGAGCTTGTGAAGACTTGATATCACGTTCAGGAGCTTGG
24128022 GA
65 GA
* *
24128024 TTGAGAAGACATGATATCTTGTTTAGGAGCTTGAGAAGA-TCTGATAT
1 TTGAGAAGACATGATATCTTGTTCAGGAGCTTGTGAAGACT-TGATAT
24128071 TCGATTTTTC
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
65 3 0.03
66 88 0.96
67 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (66 bp):
TTGAGAAGACATGATATCTTGTTCAGGAGCTTGTGAAGACTTGATATCACGTTCAGGAGCTTGGG
A
Found at i:24130224 original size:21 final size:21
Alignment explanation
Indices: 24130198--24130252 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
24130188 TTAAAGCATA
24130198 GGTATCGATACCTATACCTTT
1 GGTATCGATACCTATACCTTT
24130219 GGTATCGATACCTATACCTTT
1 GGTATCGATACCTATACCTTT
*
24130240 GGTATCAATACCT
1 GGTATCGATACCT
24130253 TGGGTAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (21 bp):
GGTATCGATACCTATACCTTT
Found at i:24143851 original size:40 final size:40
Alignment explanation
Indices: 24143807--24143989 Score: 157
Period size: 40 Copynumber: 4.6 Consensus size: 40
24143797 GCTACTCGTT
* *
24143807 CAAATGCCTTCGGGACATAGCTCGGTTAAAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTAAAGTAACTCGCA
* * *
24143847 CAAATGCCTTCGGAACTTAACCCGGATTTAA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTAAAGTAACTCGCA
*
24143887 C-CATGCCTTCGGG-CTTAGCCCGG--AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTAA--AGTAACTCGCA
* * * * *
24143925 CAAATGCCTTC-GGATCTTAGTCCAGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGGTTAAAGTAAC-TCGCA
24143966 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
24143990 ACATCATTCG
Statistics
Matches: 114, Mismatches: 17, Indels: 25
0.73 0.11 0.16
Matches are distributed among these distances:
35 1 0.01
37 1 0.01
38 21 0.18
39 21 0.18
40 52 0.46
41 18 0.16
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTAAAGTAACTCGCA
Found at i:24143938 original size:78 final size:80
Alignment explanation
Indices: 24143836--24143990 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 80
24143826 GCTCGGTTAA
* * * *
24143836 AGTAACTCGCACAAATGCCTTCGGAACTTAACCCGGATTTAATAAC-TCGCACCATGCCTTCGGG
1 AGTAACTCGCACAAATGCCTTCGGAACTTAACCCAGATTTAATAACTTAGCACAAAGCCTTCGGG
24143900 -CTTAGCCCGGAATT
66 ACTTAGCCCGGAATT
* ** * *
24143914 AGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGATTTAGTCACTTAGCACAAAGCCTTCGGG
1 AGTAACTCGCACAAATGCCTTCGGAACTTAACCCAGATTTAATAACTTAGCACAAAGCCTTCGGG
24143979 ACTTAGCCCGGA
66 ACTTAGCCCGGA
24143991 CATCATTCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 40 0.61
79 15 0.23
80 11 0.17
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AGTAACTCGCACAAATGCCTTCGGAACTTAACCCAGATTTAATAACTTAGCACAAAGCCTTCGGG
ACTTAGCCCGGAATT
Found at i:24152904 original size:38 final size:40
Alignment explanation
Indices: 24152729--24152908 Score: 163
Period size: 38 Copynumber: 4.6 Consensus size: 40
24152719 CCGCACCAAG
* * * * * * * *
24152729 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
24152769 GCCTTCGGGTCTTAGCCCGGATTTAA-AACT-GCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
24152807 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
24152847 GCCTTCGGGTCTTAACCCGG-TATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
24152885 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
24152909 CATTCAATTT
Statistics
Matches: 117, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 54 0.46
39 18 0.15
40 45 0.38
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:24160899 original size:38 final size:40
Alignment explanation
Indices: 24160724--24160903 Score: 163
Period size: 38 Copynumber: 4.6 Consensus size: 40
24160714 CCGCACCAAG
* * * * * * * *
24160724 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
24160764 GCCTTCGGGTCTTAGCCCGGATTTAACAACT--CACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
24160802 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
24160842 GCCTTCGGGTCTTAACCCGG-TATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
24160880 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
24160904 CATTCAATTT
Statistics
Matches: 117, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 57 0.49
39 13 0.11
40 47 0.40
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:24164312 original size:43 final size:43
Alignment explanation
Indices: 24164264--24164415 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 43
24164254 CCGGCATTAC
24164264 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
24164307 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
24164350 GCCTGCTAGACA-GAA-GCCCGAATATACATCACC-GCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
24164390 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
24164416 TAATACCAGC
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
40 17 0.17
41 20 0.20
42 12 0.12
43 53 0.52
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:24164406 original size:83 final size:86
Alignment explanation
Indices: 24164251--24164415 Score: 273
Period size: 83 Copynumber: 2.0 Consensus size: 86
24164241 ACATATCATT
* * *
24164251 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 TCACCGGCATGAAGCCTGCTAGACACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
24164316 GCACGAAGGCCCGAATACACA
66 GCACGAAGGCCCGAATACACA
*
24164337 TCACCGGCATGAAGCCTGCTAGACA-GAA-GCCCGAATATACATCACC-GCACGAAGCCTGCTAG
1 TCACCGGCATGAAGCCTGCTAGACACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
24164399 GCACGAAGGCCCGAATA
66 GCACGAAGGCCCGAATA
24164416 TAATACCAGC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
83 33 0.44
84 17 0.23
85 3 0.04
86 22 0.29
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.12
Consensus pattern (86 bp):
TCACCGGCATGAAGCCTGCTAGACACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
GCACGAAGGCCCGAATACACA
Found at i:24164497 original size:37 final size:38
Alignment explanation
Indices: 24164413--24164513 Score: 134
Period size: 37 Copynumber: 2.7 Consensus size: 38
24164403 GAAGGCCCGA
* * *
24164413 ATATAATACCAGCAC-TAGGCTGCGGGATTTATCCCTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCTG
24164450 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCC-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCTG
* **
24164487 GTATTTTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
24164514 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 40 0.70
38 17 0.30
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCTG
Found at i:24169926 original size:43 final size:43
Alignment explanation
Indices: 24169847--24169952 Score: 205
Period size: 43 Copynumber: 2.5 Consensus size: 43
24169837 CCGGCATTAC
24169847 GCCTGCTAGGCACGAAGG-CCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
24169889 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
24169932 GCCTGCTAGGCACGAAGGCCC
1 GCCTGCTAGGCACGAAGGCCC
24169953 CATACGAAGC
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 18 0.29
43 45 0.71
ACGTcount: A:0.28, C:0.35, G:0.27, T:0.09
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:24169945 original size:16 final size:16
Alignment explanation
Indices: 24169924--24169977 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
24169914 ACACATCACC
24169924 GGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
*
24169940 GGCACGAAGGCC--CCA
1 GGCACGAA-GCCTGCTA
*
24169955 --TACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
24169969 GGCACGAAG
1 GGCACGAAG
24169978 GCCCAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
12 3 0.10
13 5 0.17
14 2 0.07
15 2 0.07
16 14 0.48
17 3 0.10
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.09
Consensus pattern (16 bp):
GGCACGAAGCCTGCTA
Found at i:24169971 original size:72 final size:70
Alignment explanation
Indices: 24169884--24170022 Score: 251
Period size: 72 Copynumber: 2.0 Consensus size: 70
24169874 CATCACCGGC
24169884 ACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAG
1 ACGAAGCCTGCTAGGCACGAAGGCCC-AATACACATCACCGGCACGAAG-CTGCTAGGCACGAAG
24169949 GCCCCAT
64 GCCCCAT
*
24169956 ACGAAGCCTGCTAGGCACGAAGGCCCAATATACATCACCGGCACGAAGCTGCTAGGCACGAAGGC
1 ACGAAGCCTGCTAGGCACGAAGGCCCAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGC
24170021 CC
66 CC
24170023 GAATATAATA
Statistics
Matches: 66, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
70 19 0.29
71 21 0.32
72 26 0.39
ACGTcount: A:0.29, C:0.34, G:0.27, T:0.10
Consensus pattern (70 bp):
ACGAAGCCTGCTAGGCACGAAGGCCCAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGC
CCCAT
Found at i:24170109 original size:36 final size:37
Alignment explanation
Indices: 24170025--24170141 Score: 132
Period size: 36 Copynumber: 3.2 Consensus size: 37
24170015 GAAGGCCCGA
* * *
24170025 ATATAATACCAGCACTAGGCCT--GGGATTTATCCTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTG
24170060 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCT-
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTG
** * *
24170096 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCTG
24170135 ATATAAT
1 ATATAAT
24170142 CATATGCATA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
35 20 0.29
36 25 0.37
37 16 0.24
38 2 0.03
39 5 0.07
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (37 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTG
Found at i:24174422 original size:18 final size:18
Alignment explanation
Indices: 24174401--24174459 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
24174391 AAAATTCAAA
24174401 AAAAATATTTTTAAAAAT
1 AAAAATATTTTTAAAAAT
* *
24174419 AAAAATAATTATAAAAA-
1 AAAAATATTTTTAAAAAT
* * *
24174436 ATAAGATCTTTTTAAAATT
1 A-AAAATATTTTTAAAAAT
24174455 AAAAA
1 AAAAA
24174460 ATTAAAAAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATATTTTTAAAAAT
Found at i:24174809 original size:100 final size:100
Alignment explanation
Indices: 24174696--24174894 Score: 344
Period size: 100 Copynumber: 2.0 Consensus size: 100
24174686 TCCCAATAAC
*
24174696 TATAAATGAAATGGTGTAATTAATCAAAACTTAAATCTTTTGATTATTGGTCAAGAGTCATATTA
1 TATAAATGAAATGGTGTAATTAATCAAAACTTAAATCTTTTGATTATTGGTCAAGAGTCATATCA
* * *
24174761 CTTGGTTTTTGTTAAAATTATAATTATTCAAACAG
66 CTTGATTCTTGATAAAATTATAATTATTCAAACAG
* *
24174796 TATAAATGAAATGGTGTAATTAATTAAAAGTTAAATCTTTTGATTATTGGTCAAGAGTCATATCA
1 TATAAATGAAATGGTGTAATTAATCAAAACTTAAATCTTTTGATTATTGGTCAAGAGTCATATCA
24174861 CTTGATTCTTGATAAAATTATAATTATTCAAACA
66 CTTGATTCTTGATAAAATTATAATTATTCAAACA
24174895 ATATTGTTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (100 bp):
TATAAATGAAATGGTGTAATTAATCAAAACTTAAATCTTTTGATTATTGGTCAAGAGTCATATCA
CTTGATTCTTGATAAAATTATAATTATTCAAACAG
Found at i:24176910 original size:41 final size:41
Alignment explanation
Indices: 24176792--24176941 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 41
24176782 CGCTGACTCA
* *
24176792 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
24176833 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGATACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
24176873 AAAAGCCCTTCGGGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
24176914 AAAAGCCCTTCGAGACCAAGCTCTGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
24176942 TAAACCCCGA
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 30 0.34
41 59 0.66
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:24184077 original size:41 final size:41
Alignment explanation
Indices: 24184024--24184173 Score: 185
Period size: 41 Copynumber: 3.7 Consensus size: 41
24184014 CGCTGACTCA
* *
24184024 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
24184065 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGATACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
24184105 AAACGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
24184146 AAAAGCCCTACGAGACCAAGCTCTGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
24184174 TAAACCCCGA
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 31 0.35
41 58 0.65
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:24187675 original size:3 final size:3
Alignment explanation
Indices: 24187667--24187712 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
24187657 GATTTTACAA
24187667 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
24187713 TATCGATTAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24193655 original size:17 final size:19
Alignment explanation
Indices: 24193633--24193708 Score: 97
Period size: 19 Copynumber: 4.2 Consensus size: 19
24193623 ATGGAAATAT
24193633 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
24193650 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
24193669 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
24193686 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
24193705 AATC
1 AATC
24193709 CTAGAAGATA
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 23 0.43
18 1 0.02
19 30 0.56
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:24193720 original size:17 final size:19
Alignment explanation
Indices: 24193641--24193713 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
24193631 ATAATCTTCA
24193641 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24193660 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24193679 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
24193696 ATGATATGCAATCCTAGA
1 ATGATATGCAATCTTAGA
24193714 AGATATGAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.33
19 34 0.67
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:24193739 original size:22 final size:23
Alignment explanation
Indices: 24193692--24193749 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
24193682 ATACAATCTT
* *
24193692 AGATATG-ATATGCAATCCTAGA
1 AGATATGAATTTGTAATCCTAGA
*
24193714 AGATATGAATTTGTAATCTTAG-
1 AGATATGAATTTGTAATCCTAGA
*
24193736 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
24193750 GATACCTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 9 0.29
22 11 0.35
23 11 0.35
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (23 bp):
AGATATGAATTTGTAATCCTAGA
Found at i:24196820 original size:12 final size:12
Alignment explanation
Indices: 24196803--24196827 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24196793 TAAAGTTATT
24196803 AAAAAGAGAAAG
1 AAAAAGAGAAAG
24196815 AAAAAGAGAAAG
1 AAAAAGAGAAAG
24196827 A
1 A
24196828 GAGAAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:24199365 original size:1 final size:1
Alignment explanation
Indices: 24199359--24199443 Score: 53
Period size: 1 Copynumber: 85.0 Consensus size: 1
24199349 TTCTATTTCG
* * * * * * * * * *
24199359 AAAAAAAGAAAAGAAAAAGAGAAAAAAAAGAAAAAAAGAGAAAAAAAAAAAAAGAAAAAAGAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
24199424 AAGAGAAAAAAATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAA
24199444 TGGAGAGGCC
Statistics
Matches: 58, Mismatches: 26, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.01
Consensus pattern (1 bp):
A
Found at i:24199377 original size:11 final size:10
Alignment explanation
Indices: 24199359--24199435 Score: 84
Period size: 10 Copynumber: 7.5 Consensus size: 10
24199349 TTCTATTTCG
24199359 AAAAAAAGAA
1 AAAAAAAGAA
24199369 AAGAAAAAGAGA
1 AA-AAAAAGA-A
24199381 AAAAAAAGAA
1 AAAAAAAGAA
*
24199391 AAAAAGAGAA
1 AAAAAAAGAA
*
24199401 AAAAAAAAAA
1 AAAAAAAGAA
24199411 AGAAAAAAG-A
1 A-AAAAAAGAA
* *
24199421 GAAAAGAGAA
1 AAAAAAAGAA
24199431 AAAAA
1 AAAAA
24199436 TAAAAAAATG
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
9 6 0.11
10 27 0.48
11 20 0.36
12 3 0.05
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:24199384 original size:21 final size:20
Alignment explanation
Indices: 24199358--24199425 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 20
24199348 CTTCTATTTC
24199358 GAAAAAAAGAAAAGAAAAAGA
1 GAAAAAAA-AAAAGAAAAAGA
24199379 GAAAAAAAAGAAA-AAAAGAGA
1 GAAAAAAAA-AAAGAAAA-AGA
*
24199400 AAAAAAAAAAAAGAAAAAAGA
1 GAAAAAAAAAAAG-AAAAAGA
24199421 GAAAA
1 GAAAA
24199426 GAGAAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 8 0.20
21 29 0.71
22 4 0.10
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (20 bp):
GAAAAAAAAAAAGAAAAAGA
Found at i:24199390 original size:9 final size:9
Alignment explanation
Indices: 24199362--24199443 Score: 71
Period size: 9 Copynumber: 8.8 Consensus size: 9
24199352 TATTTCGAAA
24199362 AAAAGAAAAG
1 AAAA-AAAAG
*
24199372 -AAAAAGAG
1 AAAAAAAAG
24199380 AAAAAAAAG
1 AAAAAAAAG
24199389 AAAAAAAGAG
1 AAAAAAA-AG
24199399 AAAAAAAA-
1 AAAAAAAAG
24199407 AAAAAGAAA-
1 AAAAA-AAAG
24199416 AAAGAGAAAAG
1 AAA-A-AAAAG
*
24199427 AGAAAAAAAT
1 A-AAAAAAAG
24199437 AAAAAAA
1 AAAAAAA
24199444 TGGAGAGGCC
Statistics
Matches: 62, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
8 9 0.15
9 30 0.48
10 18 0.29
11 3 0.05
12 2 0.03
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:24199394 original size:30 final size:28
Alignment explanation
Indices: 24199358--24199442 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 28
24199348 CTTCTATTTC
24199358 GAAAAAAAGAAAAGAAAAAGAGAAAAAAAA
1 GAAAAAAAGAAAAGAAAAA-A-AAAAAAAA
24199388 GAAAAAAAG---AG-AAAAAAAAAAAAA
1 GAAAAAAAGAAAAGAAAAAAAAAAAAAA
24199412 GAAAAAAGAGAAAAGAGAAAAAAATAAAAAA
1 GAAAAAA-AGAAAAGA-AAAAAAA-AAAAAA
24199443 ATGGAGAGGC
Statistics
Matches: 48, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
24 15 0.31
25 3 0.06
26 4 0.08
27 2 0.04
28 2 0.04
30 16 0.33
31 6 0.12
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (28 bp):
GAAAAAAAGAAAAGAAAAAAAAAAAAAA
Found at i:24199402 original size:40 final size:39
Alignment explanation
Indices: 24199358--24199443 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
24199348 CTTCTATTTC
*
24199358 GAAAAAAAGAAAAGAAAAAGAGAAAAAAAAGAAAAAAAGA
1 GAAAAAAAAAAAAGAAAAA-AGAAAAAAAAGAAAAAAAGA
* * *
24199398 GAAAAAAAAAAAAAGAAAAAAGAGAAAAGAGAAAAAAATA
1 G-AAAAAAAAAAAAGAAAAAAGAAAAAAAAGAAAAAAAGA
24199438 -AAAAAA
1 GAAAAAA
24199444 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
38 6 0.15
40 18 0.44
41 17 0.41
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (39 bp):
GAAAAAAAAAAAAGAAAAAAGAAAAAAAAGAAAAAAAGA
Found at i:24199435 original size:32 final size:33
Alignment explanation
Indices: 24199361--24199443 Score: 96
Period size: 32 Copynumber: 2.5 Consensus size: 33
24199351 CTATTTCGAA
24199361 AAAAAGAAAAGAAAAAGAGAAAAAAAAGAAAAAAAG
1 AAAAA-AAAA-AAAAA-AGAAAAAAAAGAAAAAAAG
* * *
24199397 AGAAAAAAAAAAAAAGAAAAAAGAG-AAAAGAG
1 AAAAAAAAAAAAAAAGAAAAAAAAGAAAAAAAG
*
24199429 AAAAAAATAAAAAAA
1 AAAAAAAAAAAAAAA
24199444 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 19 0.45
33 10 0.24
34 5 0.12
35 4 0.10
36 4 0.10
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.01
Consensus pattern (33 bp):
AAAAAAAAAAAAAAAGAAAAAAAAGAAAAAAAG
Found at i:24199441 original size:23 final size:22
Alignment explanation
Indices: 24199358--24199435 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 22
24199348 CTTCTATTTC
*
24199358 GAAAAAAAGAAAAGA-AAAAGA
1 GAAAAAAAAAAAAGAGAAAAGA
*
24199379 G-AAAAAAAAGAA-A-AAAAGA
1 GAAAAAAAAAAAAGAGAAAAGA
*
24199398 GAAAAAAAAAAAAAGAAAAAAGA
1 G-AAAAAAAAAAAAGAGAAAAGA
24199421 GAAAAGAGAAAAAAA
1 GAAAA-A-AAAAAAA
24199436 TAAAAAAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
19 8 0.17
20 9 0.19
21 11 0.23
22 5 0.10
23 8 0.17
24 7 0.15
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
GAAAAAAAAAAAAGAGAAAAGA
Found at i:24199444 original size:8 final size:8
Alignment explanation
Indices: 24199367--24199443 Score: 86
Period size: 8 Copynumber: 9.5 Consensus size: 8
24199357 CGAAAAAAAG
24199367 AAAAGAAA
1 AAAAGAAA
*
24199375 AAGAGAAAA
1 AAAAG-AAA
24199384 AAAAGAAA
1 AAAAGAAA
24199392 AAAAGAGAA
1 AAAAGA-AA
24199401 AAAA-AAA
1 AAAAGAAA
24199408 AAAAG-AA
1 AAAAGAAA
24199415 AAAAGAGAA
1 AAAAGA-AA
*
24199424 AAGAGAAA
1 AAAAGAAA
*
24199432 AAAATAAA
1 AAAAGAAA
24199440 AAAA
1 AAAA
24199444 TGGAGAGGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
7 13 0.22
8 26 0.44
9 20 0.34
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.01
Consensus pattern (8 bp):
AAAAGAAA
Found at i:24200749 original size:78 final size:78
Alignment explanation
Indices: 24200653--24200988 Score: 422
Period size: 78 Copynumber: 4.2 Consensus size: 78
24200643 CGAAGAAACA
* * * * *
24200653 GATTTGGCATCTCCATATTCGATGGAGATCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
24200718 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
24200731 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
24200796 GCAAATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
24200809 GTTTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAACAAAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
24200873 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
24200887 GATTTGGCATGATTTGGCATCTCGGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCTGAT
1 GATTTGGC---A--T--C-TCT--ATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGAC
24200952 CTTCATTGAAGCAGATCCAAGAT
56 CTTCATTGAAGCAGATCCAAGAT
24200975 GATTTGGCATCTCT
1 GATTTGGCATCTCT
24200989 GTACTGTCAG
Statistics
Matches: 224, Mismatches: 22, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.00
78 145 0.65
80 3 0.01
81 2 0.01
83 2 0.01
85 2 0.01
86 3 0.01
88 65 0.29
89 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:24200960 original size:88 final size:88
Alignment explanation
Indices: 24200811--24200984 Score: 278
Period size: 88 Copynumber: 2.0 Consensus size: 88
24200801 TCCAAGATGT
* *
24200811 TTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAAGC
1 TTTGGCATCTCGGTATTAGACGGGGAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAAGC
24200876 AGATCCAAGATGATTTGGCATGA
66 AGATCCAAGATGATTTGGCATGA
** * *
24200899 TTTGGCATCTCGGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCT-GATCTTCATTGAAG
1 TTTGGCATCTCGGTATTAGACGGGGAGCAGATCGAAGACATAACAAAT-TGGACCTTCATTGAAG
24200963 CAGATCCAAGATGATTTGGCAT
65 CAGATCCAAGATGATTTGGCAT
24200985 CTCTGTACTG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 78 0.99
89 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (88 bp):
TTTGGCATCTCGGTATTAGACGGGGAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAAGC
AGATCCAAGATGATTTGGCATGA
Found at i:24201293 original size:87 final size:88
Alignment explanation
Indices: 24201186--24201351 Score: 237
Period size: 87 Copynumber: 1.9 Consensus size: 88
24201176 TCCAAGATGA
* *
24201186 CAGATTTGGCATCTCAGTATTAGACGGGGAGAAAATCGGAGATAACAGATTTGGCATCTC-TATT
1 CAGATTTGGCATCTCAGTATTAGACGGGGAGAAAATCGAAGATAACAAATTTGGCATCTCGTATT
24201250 AGAC-GGAGAGCAGATTGAAGAAG
66 AGACAGG-GAGCAGATTGAAGAAG
* * * * *
24201273 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCAGTATTAGACGGGGAGAAAATCGAAGATAACAAATTTGGCATCTC-GTAT
24201338 TAGACAGGGAGCAG
65 TAGACAGGGAGCAG
24201352 GTCAAAGATA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 53 0.77
89 14 0.20
90 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (88 bp):
CAGATTTGGCATCTCAGTATTAGACGGGGAGAAAATCGAAGATAACAAATTTGGCATCTCGTATT
AGACAGGGAGCAGATTGAAGAAG
Found at i:24201340 original size:45 final size:45
Alignment explanation
Indices: 24201096--24201367 Score: 232
Period size: 45 Copynumber: 6.1 Consensus size: 45
24201086 GATCCAAGAT
* * *
24201096 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
24201143 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * * *
24201188 GATTTGGCATCTCAGTATTAGACGGGGAGAAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
24201233 GATTTGGCATCTC--TATTAGACGGAGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
24201275 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * * * *
24201320 AATTTGGCGTCTCTGTATTAGACAGGGAGCAGGTCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
24201365 GAT
1 GAT
24201368 ATCGCCTTCT
Statistics
Matches: 177, Mismatches: 39, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
42 15 0.08
43 21 0.12
44 27 0.15
45 84 0.47
46 4 0.02
47 21 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:24201721 original size:14 final size:15
Alignment explanation
Indices: 24201702--24201757 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
24201692 AATCTTCAAT
24201702 GATATG-CAATCTTA
1 GATATGACAATCTTA
24201716 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
24201733 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
24201751 GATATGA
1 GATATGA
24201758 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:24201746 original size:35 final size:37
Alignment explanation
Indices: 24201700--24201778 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
24201690 ATAATCTTCA
24201700 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
24201736 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
24201772 A-GATATG
1 ATGATATG
24201779 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:24201778 original size:17 final size:19
Alignment explanation
Indices: 24201700--24201771 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
24201690 ATAATCTTCA
24201700 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24201719 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24201736 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24201754 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
24201772 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:24201797 original size:22 final size:22
Alignment explanation
Indices: 24201700--24201794 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
24201690 ATAATCTTCA
24201700 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24201719 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24201736 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24201754 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
24201776 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
24201795 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:24206334 original size:19 final size:20
Alignment explanation
Indices: 24206297--24206334 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
24206287 AAAAACCGTC
**
24206297 AAAACTTTTTATTTTCTCCT
1 AAAACTTTTTATTCCCTCCT
24206317 AAAA-TTTTTATTCCCTCC
1 AAAACTTTTTATTCCCTCC
24206335 AACTTTCCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (20 bp):
AAAACTTTTTATTCCCTCCT
Found at i:24210578 original size:48 final size:48
Alignment explanation
Indices: 24210507--24210938 Score: 675
Period size: 48 Copynumber: 9.0 Consensus size: 48
24210497 TGTTACAACC
* * * * *
24210507 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
24210555 TTCACATTTGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24210603 TTCACATTCGCCATTCGGCTTTACCACAGATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24210651 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24210699 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** *
24210747 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCGTATGTAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
24210795 TTCACATTCGCCATTCGGCTTTACCATATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
24210843 TTCACATTAGCCATTCGGGTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24210891 TTCACATTCACCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
24210939 ATTTATCTTG
Statistics
Matches: 353, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 353 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:24212036 original size:2 final size:2
Alignment explanation
Indices: 24212029--24212073 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
24212019 TTAATCGTTG
24212029 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24212071 AT A
1 AT A
24212074 CAGCATTAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24214874 original size:21 final size:17
Alignment explanation
Indices: 24214831--24214870 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 17
24214821 TAGGGGAAGG
24214831 AAGAAAGAAAAAGAGAA
1 AAGAAAGAAAAAGAGAA
24214848 AAGAAAGAAGAAAGAAGAA
1 AAGAAAGAA-AAAG-AGAA
24214867 AAGA
1 AAGA
24214871 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 9 0.43
18 4 0.19
19 8 0.38
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAAAAGAGAA
Done.