Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 93 of 427
Found at i:24529070 original size:47 final size:44
Alignment explanation
Indices: 24528957--24529072 Score: 110
Period size: 47 Copynumber: 2.5 Consensus size: 44
24528947 TCTTTATACT
* *
24528957 ATTATATTATTTTATACATTTTAACAATATATTATTTCATATTATT
1 ATTATATTATTTTAT--ATTTTAACAATATATCATTTCATATTATA
*
24529003 ATTAT-TTATTGTATATTATTTTTAC-ATATATACACTTTCATATTATAA
1 ATTATATTATT-T-TA-TATTTTAACAATATAT-CA-TTTCATATTAT-A
24529051 ATTATAATTATTTTATATTTTA
1 ATTAT-ATTATTTTATATTTTA
24529073 TACCTTTATA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
45 11 0.19
46 14 0.24
47 19 0.33
48 8 0.14
49 1 0.02
50 5 0.09
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (44 bp):
ATTATATTATTTTATATTTTAACAATATATCATTTCATATTATA
Found at i:24529278 original size:2 final size:2
Alignment explanation
Indices: 24529271--24529311 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
24529261 AACTTATACT
24529271 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24529312 GTTATTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24529384 original size:17 final size:17
Alignment explanation
Indices: 24529364--24529429 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
24529354 TTATATACCA
*
24529364 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
24529381 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
24529398 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
24529413 ATTATATATTATATTTT
1 A-TATATATTATATTTT
24529430 AAATATGTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:24531695 original size:2 final size:2
Alignment explanation
Indices: 24531690--24531720 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24531680 AATAAAAAAT
24531690 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24531721 TTGTTTGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24539359 original size:40 final size:40
Alignment explanation
Indices: 24539274--24539424 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
24539264 AATTGAATGA
* * *
24539274 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
24539314 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
24539355 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
24539394 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
24539425 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:24539438 original size:40 final size:40
Alignment explanation
Indices: 24539311--24539440 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
24539301 ATGCTGGAAA
* * * *
24539311 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
24539351 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
24539391 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
24539431 TTATATCCGG
1 TTATATCCGG
24539441 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:24547383 original size:40 final size:40
Alignment explanation
Indices: 24547298--24547448 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
24547288 AATTGAATGA
* * *
24547298 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
24547338 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
24547379 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
24547418 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
24547449 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:24547462 original size:40 final size:40
Alignment explanation
Indices: 24547335--24547464 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
24547325 ATGCTGGAAA
* * * *
24547335 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
24547375 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
24547415 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
24547455 TTATATCCGG
1 TTATATCCGG
24547465 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:24554551 original size:40 final size:40
Alignment explanation
Indices: 24554496--24554705 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24554486 AACATTGGAA
24554496 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24554536 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24554576 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
24554616 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
24554655 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
24554696 CTATATCCGG
1 ATATATCCGG
24554706 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:24562687 original size:40 final size:40
Alignment explanation
Indices: 24562632--24562841 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24562622 AACATTGGAA
24562632 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24562672 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24562712 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
24562752 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
24562791 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
24562832 CTATATCCGG
1 ATATATCCGG
24562842 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:24565231 original size:46 final size:46
Alignment explanation
Indices: 24565164--24565335 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
24565154 AACCCGCCCC
*
24565164 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
24565210 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
24565258 TCA-CGAACTCGGATTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
24565303 TAGGGGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
24565336 ATAGTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 59 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:24565279 original size:93 final size:93
Alignment explanation
Indices: 24565169--24565337 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
24565159 GCCCCTAAGT
* * *
24565169 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
24565234 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
24565262 GAACTCGGATTCAACTCAACGAGTTCGGACATTCGCATCCATAGGGGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
24565327 CGAGTTCGGAT
66 CGAGTTCGGAT
24565338 AGTCAACCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24565794 original size:30 final size:30
Alignment explanation
Indices: 24565760--24565819 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
24565750 ATTTAATACG
*
24565760 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTAAACTTTTGCCCCTA
* * *
24565790 AACTTTTGCATAATTAAACTTTTGCCCCTA
1 AACTTTGGAAAAATTAAACTTTTGCCCCTA
24565820 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTAAACTTTTGCCCCTA
Found at i:24567964 original size:66 final size:66
Alignment explanation
Indices: 24567841--24567995 Score: 159
Period size: 66 Copynumber: 2.3 Consensus size: 66
24567831 TTTTTCAAGG
* * ** *
24567841 TCCTAAACAAGATATCAT-GTCTTTTCAATCCCAAGCTCCTGAACGCGATAACGAGTCTTCACAA
1 TCCTGAACAAGATATC-TGGTCTTTTCAATCCCAAGATCCTGAACAAGATAACAAGTCTTCACAA
*
24567905 GC
65 AC
** * *** *
24567907 TCCTGAATGAGATATCTGGTCTTTTCAATCCCAAGATCTTGAACAAGATGTTAAGTCTTTACAAA
1 TCCTGAACAAGATATCTGGTCTTTTCAATCCCAAGATCCTGAACAAGATAACAAGTCTTCACAAA
24567972 C
66 C
* *
24567973 TCTTGAACAAGATATCGGGTCTT
1 TCCTGAACAAGATATCTGGTCTT
24567996 CTCAGTTCTT
Statistics
Matches: 71, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
65 1 0.01
66 70 0.99
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (66 bp):
TCCTGAACAAGATATCTGGTCTTTTCAATCCCAAGATCCTGAACAAGATAACAAGTCTTCACAAA
C
Found at i:24572464 original size:31 final size:31
Alignment explanation
Indices: 24572422--24572483 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
24572412 AGACCTTGAG
24572422 AAAAAACGAAGTCTCCCACAAAATACTCTAT
1 AAAAAACGAAGTCTCCCACAAAATACTCTAT
*
24572453 AAAAAATGAAGTCTCCCACAAAATACTCTAT
1 AAAAAACGAAGTCTCCCACAAAATACTCTAT
24572484 CTCTCGACGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.21
Consensus pattern (31 bp):
AAAAAACGAAGTCTCCCACAAAATACTCTAT
Found at i:24581755 original size:2 final size:2
Alignment explanation
Indices: 24581748--24581785 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
24581738 GGAAACTGGT
24581748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24581786 AAAGAAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24583571 original size:2 final size:2
Alignment explanation
Indices: 24583564--24583596 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
24583554 TTTGAATGTG
*
24583564 TA TA TA TA TA TA AA TA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24583597 CACAATTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:24588030 original size:29 final size:28
Alignment explanation
Indices: 24587942--24588043 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
24587932 TACTCAATCA
* *
24587942 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
24587971 CGCACACATAGTGCCATATAGTCCCAA-CT
1 CGCACACTTAGTGCCGTACA-T-TCAAGCT
24588000 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
24588029 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
24588044 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.03
28 6 0.10
29 47 0.81
30 3 0.05
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:24600086 original size:40 final size:40
Alignment explanation
Indices: 24600041--24600207 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24600031 CGGAATATAA
24600041 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24600081 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
24600121 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24600161 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24600200 CCGGATAT
1 CCGGATAT
24600208 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24600191 original size:80 final size:79
Alignment explanation
Indices: 24600041--24600207 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
24600031 CGGAATATAA
* *
24600041 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
24600106 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
24600121 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
24600183 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
24600200 CCGGATAT
1 CCGGATAT
24600208 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:24601053 original size:17 final size:19
Alignment explanation
Indices: 24601030--24601075 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
24601020 AAGAAGCATG
24601030 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
24601048 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
24601066 AATCATGCTC
1 AATCATGCTC
24601076 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:24603423 original size:29 final size:28
Alignment explanation
Indices: 24603335--24603436 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
24603325 TACTCAATCA
* *
24603335 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
24603364 CGCACACATAGTGCCATATAGTCCCAA-CT
1 CGCACACTTAGTGCCGTACA-T-TCAAGCT
24603393 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
24603422 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
24603437 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.03
28 6 0.10
29 47 0.81
30 3 0.05
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:24606496 original size:2 final size:2
Alignment explanation
Indices: 24606491--24606517 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24606481 AATAAAAAAT
24606491 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24606518 TTGTTTGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24619065 original size:18 final size:18
Alignment explanation
Indices: 24619042--24619078 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24619032 CAACCTTACC
24619042 AATATTTCATCATTTATA
1 AATATTTCATCATTTATA
24619060 AATATTTCATCATTTATA
1 AATATTTCATCATTTATA
24619078 A
1 A
24619079 CTAGTTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.49
Consensus pattern (18 bp):
AATATTTCATCATTTATA
Found at i:24625373 original size:26 final size:26
Alignment explanation
Indices: 24625342--24625449 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
24625332 TGAAATGCCC
*
24625342 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
24625368 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
24625394 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
24625420 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24625446 ATCA
1 ATCA
24625450 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24627051 original size:119 final size:112
Alignment explanation
Indices: 24626829--24627042 Score: 266
Period size: 119 Copynumber: 1.8 Consensus size: 112
24626819 AAAATACTTG
* * * * ** *
24626829 ATACATACTTTAACATTTTATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACAT
1 ATACATACATTAACATTTCATGCAAATACAACATAGAAAACAATAAATAACAACATAAATTACAT
* *
24626894 AATATACATTAACATTTCATGCAGATATAATCGTAAATAACATAAAT
66 AATATACAATAACATTTCATGCAAATATAATCGTAAATAACATAAAT
*
24626941 ATACATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTA
1 ATACATACATTAACATTTCATGC-AAATACAACATAGAAAACAAT-AA-ATAACAACATAAATTA
*
24627006 CATAATATATATACAATAATATTTCATGCAAATATAA
63 C---ATA-ATATACAATAACATTTCATGCAAATATAA
24627043 CTTAAAATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
112 21 0.25
113 17 0.20
114 2 0.02
115 15 0.18
118 3 0.04
119 26 0.31
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (112 bp):
ATACATACATTAACATTTCATGCAAATACAACATAGAAAACAATAAATAACAACATAAATTACAT
AATATACAATAACATTTCATGCAAATATAATCGTAAATAACATAAAT
Found at i:24627516 original size:5 final size:5
Alignment explanation
Indices: 24627502--24627658 Score: 82
Period size: 5 Copynumber: 31.2 Consensus size: 5
24627492 ATACATAACA
* *
24627502 ATAA- ATAAT ATAAT A-ATAT AATAAT ATAAT AT-AT AATAAA ATAAA
1 ATAAT ATAAT ATAAT ATA-AT -ATAAT ATAAT ATAAT -ATAAT ATAAT
* *
24627547 ATAAT ATGAT GAATAAT AT-AT ATAAT A-AA- ATGAT ATAATAT ATAAT
1 ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT
* *
24627593 AAAAT ATAAAT AAAAT ATAA- ATAAT ATAAT A-AAT AATACAT A-AAT
1 ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATA-AT ATAAT
*
24627638 A-AAA ATAAT ATATAT ATAAT A
1 ATAAT ATAAT ATA-AT ATAAT A
24627659 ATTTTTTCCA
Statistics
Matches: 121, Mismatches: 12, Indels: 39
0.70 0.07 0.23
Matches are distributed among these distances:
3 1 0.01
4 27 0.22
5 66 0.55
6 16 0.13
7 11 0.09
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (5 bp):
ATAAT
Found at i:24627573 original size:34 final size:32
Alignment explanation
Indices: 24627508--24627660 Score: 157
Period size: 34 Copynumber: 4.6 Consensus size: 32
24627498 AACAATAAAT
*
24627508 AATATAATAATATAATAAT-ATAATATATAATAA
1 AATAAAATAATATAATAATAAT-ATATA-AATAA
*
24627541 AATAAAATAATATGATGAATAATATATATAATAA
1 AATAAAATAATATAAT-AATAATATATA-AATAA
* * *
24627575 AATGATATAATAT-ATAATAAAATATAAATAA
1 AATAAAATAATATAATAATAATATATAAATAA
*
24627606 AATATAAATAATATAATAAATAATACATAAATAAA
1 AATA-AAATAATATAAT-AATAATATATAAAT-AA
*
24627641 AATAATATATATATAATAAT
1 AATAAAATA-ATATAATAAT
24627661 TTTTTCCATA
Statistics
Matches: 103, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
31 8 0.08
32 18 0.17
33 18 0.17
34 44 0.43
35 15 0.15
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (32 bp):
AATAAAATAATATAATAATAATATATAAATAA
Found at i:24627587 original size:54 final size:53
Alignment explanation
Indices: 24627485--24627624 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 53
24627475 TAAAATTTTT
* * *
24627485 TAAAATTATACATAACA-ATAAATAATATAATAATATAATAATATAATATATAA
1 TAAAA-TATAAATAAAATATAAATAATATAATAATAAAATAATATAATATATAA
* * *
24627538 TAAAATA-AAATAATATGATGAATAATATATATAATAAAATGATATAATATATAA
1 TAAAATATAAATAAAAT-ATAAATAATATA-ATAATAAAATAATATAATATATAA
24627592 TAAAATATAAATAAAATATAAATAATATAATAA
1 TAAAATATAAATAAAATATAAATAATATAATAA
24627625 ATAATACATA
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
51 6 0.08
52 2 0.03
53 20 0.26
54 40 0.53
55 8 0.11
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (53 bp):
TAAAATATAAATAAAATATAAATAATATAATAATAAAATAATATAATATATAA
Found at i:24627646 original size:54 final size:54
Alignment explanation
Indices: 24627485--24627656 Score: 169
Period size: 54 Copynumber: 3.2 Consensus size: 54
24627475 TAAAATTTTT
* *
24627485 TAAAATTATACATAACA-ATAAATAATATAAT-AAT-ATAATAATATAATATATAA
1 TAAAA-TATAAATAAAATATAAATAATATAATAAATAATAATAA-ATAATATATAA
* * *
24627538 TAAAATA-AAATAATATGATGAATAATAT-ATATAATAA-AATGATATAATATATAA
1 TAAAATATAAATAAAAT-ATAAATAATATAATA-AATAATAAT-AAATAATATATAA
*
24627592 TAAAATATAAATAAAATATAAATAATATAATAAATAATACATAAATAA-AAATAA
1 TAAAATATAAATAAAATATAAATAATATAATAAATAATA-ATAAATAATATATAA
*
24627646 TATATATATAA
1 TA-AAATATAA
24627657 TAATTTTTTC
Statistics
Matches: 99, Mismatches: 9, Indels: 20
0.77 0.07 0.16
Matches are distributed among these distances:
51 6 0.06
52 4 0.04
53 15 0.15
54 46 0.46
55 26 0.26
56 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (54 bp):
TAAAATATAAATAAAATATAAATAATATAATAAATAATAATAAATAATATATAA
Found at i:24627659 original size:54 final size:51
Alignment explanation
Indices: 24627505--24627743 Score: 155
Period size: 54 Copynumber: 4.7 Consensus size: 51
24627495 CATAACAATA
* *
24627505 AATAATATA-ATAATATAATAATATAATATATAATAAAATAAAATAATATGAT
1 AATAATATATATAATA-AATAA-ATAATATATAATAAAATAATATAATATAAT
* *
24627557 GAATAATATATATAATAAAATGATATAATATATAATAAAAT-ATA-AATAAAAT
1 -AATAATATATATAAT-AAAT-AAATAATATATAATAAAATAATATAATATAAT
*
24627609 -ATAA-ATA-AT-AT-AATAAATAATACATAAATAAAAATAATATATATATAAT
1 AATAATATATATAATAAATAAATAATATAT-AAT-AAAATAATATA-ATATAAT
** * * *
24627658 AATTTTTTCCATAT-ATAAAT-AAT-ATTTATAGTAAAAATAA-ATAATAT-AT
1 AATAATAT--ATATAATAAATAAATAATATATAAT-AAAATAATATAATATAAT
* * * *
24627707 AA-AATATTTAAAATAAATAAATTATATATAAAAAAAT
1 AATAATATATATAATAAATAAATAATATATAATAAAAT
24627744 TAAAAAGGAT
Statistics
Matches: 148, Mismatches: 21, Indels: 39
0.71 0.10 0.19
Matches are distributed among these distances:
44 9 0.06
45 6 0.04
46 7 0.05
47 11 0.07
48 13 0.09
49 19 0.13
50 10 0.07
51 4 0.03
52 16 0.11
53 16 0.11
54 32 0.22
55 5 0.03
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (51 bp):
AATAATATATATAATAAATAAATAATATATAATAAAATAATATAATATAAT
Found at i:24627725 original size:29 final size:29
Alignment explanation
Indices: 24627692--24627748 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
24627682 TTTATAGTAA
* *
24627692 AAATAAATAATATATAAAATATTTAAAAT
1 AAATAAATAATATATAAAAAAATTAAAAT
*
24627721 AAATAAATTATATATAAAAAAATTAAAA
1 AAATAAATAATATATAAAAAAATTAAAA
24627749 AGGATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATAAATAATATATAAAAAAATTAAAAT
Found at i:24627741 original size:22 final size:22
Alignment explanation
Indices: 24627672--24627740 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 22
24627662 TTTTCCATAT
24627672 ATAAATAATATT-TATAGTAAAA
1 ATAAATAATATTATATA-TAAAA
* *
24627694 ATAAATAATATATAAAATATTTAAA
1 ATAAATAATAT-T-ATATA-TAAAA
24627719 ATAAATAA-ATTATATATAAAA
1 ATAAATAATATTATATATAAAA
24627740 A
1 A
24627741 AATTAAAAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 5 0.13
22 15 0.38
23 2 0.05
24 2 0.05
25 15 0.38
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (22 bp):
ATAAATAATATTATATATAAAA
Found at i:24627943 original size:30 final size:30
Alignment explanation
Indices: 24627909--24627966 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
24627899 ATAATGGCCA
*
24627909 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
24627939 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
24627967 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:24628998 original size:27 final size:27
Alignment explanation
Indices: 24628950--24629104 Score: 176
Period size: 27 Copynumber: 5.7 Consensus size: 27
24628940 GCGAGGCTGC
* *
24628950 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
24628977 CAGATATTATGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
24629003 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
24629030 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
24629057 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
24629084 CAGATAATTGTGGCATAGCCA
1 CAGAT-ATTGTGGCAGAGCCA
24629105 TCAGGACGCT
Statistics
Matches: 111, Mismatches: 9, Indels: 16
0.82 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 96 0.86
28 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:24629044 original size:54 final size:54
Alignment explanation
Indices: 24628968--24629104 Score: 231
Period size: 54 Copynumber: 2.5 Consensus size: 54
24628958 GTGACGAAGT
* *
24628968 CACCAGATACAGAT-ATTATGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
24629022 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
24629076 CACCAGATCAGATAATTGTGGCATAGCCA
1 CACCAGATCAGATAATTGTGGCATAGCCA
24629105 TCAGGACGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 73 0.94
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:24630760 original size:26 final size:26
Alignment explanation
Indices: 24630729--24630836 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
24630719 TGAAATGCCC
*
24630729 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
24630755 ACCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
24630781 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
24630807 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24630833 ATCA
1 ATCA
24630837 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24632451 original size:90 final size:90
Alignment explanation
Indices: 24632280--24632856 Score: 800
Period size: 90 Copynumber: 6.4 Consensus size: 90
24632270 TAATATCCTT
* * * * *
24632280 GATCTGCTCCCCGTCAAATACAGAGACACCAAATCT-ACTATTTTTGATCTACTTTGATGTAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATTTTCGATCTGCTTTGATGTAAAC
*
24632344 ACGCGAATGTCAGATCTGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * * * *
24632370 GACCTGCTTCCCGTCTAATACAAAGATGCCAAATCTGTCATTTTCGATCTGTTTTGATGTAATCA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTTGATGTAAACA
* * *
24632435 CACAAATATCATATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* ** *
24632460 GATCTGCTCCTCGTCTAATACAGAGACGCCAAATCTGTCATTTTTTATCTTCTTTGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTTGATGTAAACA
* * *
24632525 CACAAATGTTAGATCTGCTGTCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * *
24632550 GATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTT-GATCTGCTTCGATGTAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCAT-TTTCGATCTGCTTTGATGTAAAC
*
24632614 ACACGAATGTCAGATATGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
*
24632640 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCT-ATGTAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTT-TGATGTAAAC
24632704 ACACGAATGTCAGATCTGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * *
24632730 GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTAATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTTGATGTAAACA
24632795 CACGAATGTCAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * *
24632820 GATCTGCTCCCCGTCTAATACAAAAATGCCAAATCTG
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
24632857 CTTATTCGAT
Statistics
Matches: 431, Mismatches: 51, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
89 2 0.00
90 425 0.99
91 4 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTTGATGTAAACA
CACGAATGTCAGATCTGCTATCTTC
Found at i:24632496 original size:45 final size:45
Alignment explanation
Indices: 24632357--24632903 Score: 295
Period size: 45 Copynumber: 12.2 Consensus size: 45
24632347 CGAATGTCAG
* * *
24632357 ATCTGCTATCTTCGACCTGCTTCCCGTCTAATACAAAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *** * * * ** *
24632402 ATCTG-TCATTTTCGATCTG-T-TTTGATGTAATCACACAAATATCAT
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAAT-ACAGAGATGCCAA
* *
24632447 ATCTGCTATCTTCGATCTGCTCCTCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* ** *** * * * * ** *
24632492 ATCTG-TCATTTTTTATCT--TCTTTGATGTAAACACACAAATGTTAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCT-AATACAGAGATGCCAA
* *
24632537 ATCTGCTGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * *
24632582 ATCTG-TCATCTTTGATCTGCT--TCGATGTAA-ACACACGAATGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
24632627 ATATGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* ** * * * *
24632672 ATCTG-TCATCTTCGATCTGCT-TCTATGTAA-ACACACGAATGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCGTCTAATACAGA-G-ATGCCAA
* *
24632717 ATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * *
24632762 ATCTG-TAATCTTCGATCTGCT--TCGATGTAA-ACACACGAATGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
24632807 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAAAAATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
24632852 ATCTGCT-TATTCGATTTGTTCCCCGTC-AATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
24632895 ATCTGCTAT
1 ATCTGCTAT
24632904 TGGTGATCTA
Statistics
Matches: 368, Mismatches: 99, Indels: 71
0.68 0.18 0.13
Matches are distributed among these distances:
43 41 0.11
44 47 0.13
45 230 0.62
46 29 0.08
47 21 0.06
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:24639995 original size:25 final size:25
Alignment explanation
Indices: 24639967--24640041 Score: 141
Period size: 25 Copynumber: 3.0 Consensus size: 25
24639957 ACATGGTAGT
24639967 TTCTTTCTCCAAGAGCGGTGGTTGA
1 TTCTTTCTCCAAGAGCGGTGGTTGA
*
24639992 TTCTTTCTCCAAGAGCAGTGGTTGA
1 TTCTTTCTCCAAGAGCGGTGGTTGA
24640017 TTCTTTCTCCAAGAGCGGTGGTTGA
1 TTCTTTCTCCAAGAGCGGTGGTTGA
24640042 ACTTGCATGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (25 bp):
TTCTTTCTCCAAGAGCGGTGGTTGA
Found at i:24644622 original size:119 final size:112
Alignment explanation
Indices: 24644400--24644613 Score: 275
Period size: 119 Copynumber: 1.8 Consensus size: 112
24644390 AAAATACATG
* * * ** *
24644400 ATACATACTTTAACATTTCATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACAT
1 ATACATACATTAACATTTCATGCAAATACAACATAGAAAACAATAAATAACAACATAAATTACAT
* *
24644465 AATATACATTAACATTTCATGCAGATATAATCATAAATAACATAAAT
66 AATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
*
24644512 ATACATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTA
1 ATACATACATTAACATTTCATGC-AAATACAACATAGAAAACAAT-AA-ATAACAACATAAATTA
*
24644577 CATAATATATATACAATAATATTTCATGCAAATATAA
63 C---ATA-ATATACAATAACATTTCATGCAAATATAA
24644614 CTTAAAATAT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
112 22 0.26
113 17 0.20
114 2 0.02
115 15 0.18
118 3 0.04
119 26 0.31
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.30
Consensus pattern (112 bp):
ATACATACATTAACATTTCATGCAAATACAACATAGAAAACAATAAATAACAACATAAATTACAT
AATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
Found at i:24644678 original size:18 final size:18
Alignment explanation
Indices: 24644655--24644689 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24644645 ATGCAAATAT
24644655 ATAAAAACAATAAATAAC
1 ATAAAAACAATAAATAAC
*
24644673 ATAAAAATAATAAATAA
1 ATAAAAACAATAAATAA
24644690 TTTATGAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAAACAATAAATAAC
Found at i:24645099 original size:5 final size:5
Alignment explanation
Indices: 24645066--24645243 Score: 103
Period size: 5 Copynumber: 36.2 Consensus size: 5
24645056 AAAATTATAC
* *
24645066 ATAAT AATAA- ATAAT AT-AT AATAAA ATAAT ATAAT ATAAT AT-AT AATAAA
1 ATAAT -ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
* *
24645116 ATAAAA ATAAT ATAAT GAATAAT AT-AT ATAAT A-AA- ATGAT ATAAT
1 AT-AAT ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * *
24645161 ATATTAT AAAAT ATAA- ATAAA AT-AT ATAAT AAAAT ATAA- ATAAT ATAAT
1 ATA--AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
24645210 A-AAT AATACAT A-AAT A-AAA ATAAT AT-AT ATAAT A
1 ATAAT -ATA-AT ATAAT ATAAT ATAAT ATAAT ATAAT A
24645244 ATTTTTTACA
Statistics
Matches: 138, Mismatches: 13, Indels: 43
0.71 0.07 0.22
Matches are distributed among these distances:
3 1 0.01
4 39 0.28
5 74 0.54
6 13 0.09
7 11 0.08
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (5 bp):
ATAAT
Found at i:24645173 original size:55 final size:54
Alignment explanation
Indices: 24645066--24645245 Score: 192
Period size: 55 Copynumber: 3.3 Consensus size: 54
24645056 AAAATTATAC
*
24645066 ATAATA-ATA-AATAATATATAATAAAATAATATAATATAATATATAATAAAATAAAA
1 ATAATATATATAATAATATAT-AT--AATAATAT-ATATAATATATTATAAAATAAAA
* *
24645122 ATAATATA-ATGAATAATATATATAATAAAATGATATAATATATTATAAAATATAA
1 ATAATATATAT-AATAATATATATAATAATAT-ATATAATATATTATAAAATAAAA
* * * *
24645177 ATAAAATATATAATAAAATATA-AATAATATA-ATAA-ATAATACATAAATAAAA
1 ATAATATATATAATAATATATATAATAATATATATAATATATTATA-AAATAAAA
24645229 ATAATATATATAATAAT
1 ATAATATATATAATAAT
24645246 TTTTTACATA
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
51 6 0.06
52 26 0.24
53 1 0.01
54 7 0.07
55 45 0.42
56 9 0.08
57 3 0.03
58 10 0.09
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (54 bp):
ATAATATATATAATAATATATATAATAATATATATAATATATTATAAAATAAAA
Found at i:24645203 original size:78 final size:79
Alignment explanation
Indices: 24645076--24645244 Score: 240
Period size: 78 Copynumber: 2.2 Consensus size: 79
24645066 ATAATAATAA
* * *
24645076 ATAATATATAATAAAATAATATAATATAATATATAATAAAATAAAAATAATATAATGAATAATAT
1 ATAATATATAATAAAATAATATAATAAAATATATAATAAAATAAAAATAATATAATAAATAATAC
24645141 ATATAATAAAATGAT
66 ATA-AATAAAATGAT
* *
24645156 ATAATATATTATAAAAT-ATA-AATAAAATATATAATAAAATATAAATAATATAATAAATAATAC
1 ATAATATATAATAAAATAATATAATAAAATATATAATAAAATAAAAATAATATAATAAATAATAC
24645219 ATAAATAAAA--AT
66 ATAAATAAAATGAT
24645231 A-ATATATATAATAA
1 ATA-ATATATAATAA
24645245 TTTTTTACAT
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
74 1 0.01
75 13 0.16
77 7 0.09
78 42 0.51
79 3 0.04
80 16 0.20
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (79 bp):
ATAATATATAATAAAATAATATAATAAAATATATAATAAAATAAAAATAATATAATAAATAATAC
ATAAATAAAATGAT
Found at i:24645270 original size:19 final size:21
Alignment explanation
Indices: 24645232--24645270 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24645222 AATAAAAATA
*
24645232 ATATATATAATAATTTTTTAC
1 ATATATATAATAATTGTTTAC
24645253 ATATATA-AATAA-TGTTTA
1 ATATATATAATAATTGTTTA
24645271 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATAATAATTGTTTAC
Found at i:24645522 original size:30 final size:30
Alignment explanation
Indices: 24645488--24645545 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
24645478 ATAATGGCCA
*
24645488 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
24645518 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
24645546 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:24646241 original size:17 final size:17
Alignment explanation
Indices: 24646199--24646350 Score: 180
Period size: 17 Copynumber: 8.6 Consensus size: 17
24646189 CAATGATATG
*
24646199 CAATCTTAGATGTGATA
1 CAATCTTAGATATGATA
*
24646216 TGGAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
24646235 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
24646253 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
24646270 CAATCTTATATATGATTG
1 CAATCTTAGATATGA-TA
24646288 CAA-CTTAGATATGATA
1 CAATCTTAGATATGATA
*
24646304 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
24646322 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
24646341 CAATCTTAGA
1 CAATCTTAGA
24646351 AGATATGATT
Statistics
Matches: 116, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
16 4 0.03
17 50 0.43
18 35 0.30
19 26 0.22
20 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:24646264 original size:35 final size:35
Alignment explanation
Indices: 24646199--24646350 Score: 243
Period size: 35 Copynumber: 4.3 Consensus size: 35
24646189 CAATGATATG
* *
24646199 CAATCTTAGATGTGATATGGAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
24646235 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
24646270 CAATCTTATATATGATTGCAA-CTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
24646304 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
24646341 CAATCTTAGA
1 CAATCTTAGA
24646351 AGATATGATT
Statistics
Matches: 109, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
34 33 0.30
35 48 0.44
36 15 0.14
37 13 0.12
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:24646304 original size:69 final size:72
Alignment explanation
Indices: 24646199--24646357 Score: 247
Period size: 69 Copynumber: 2.3 Consensus size: 72
24646189 CAATGATATG
* *
24646199 CAATCTTAGATGTGATATGGAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
24646264 ATG-ATA
66 ATGAATA
*
24646270 CAATCTTATATATGAT-TGCAA-CTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
24646333 ATGATATA
66 ATGA-ATA
24646341 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
24646358 ATTTTGTAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
69 48 0.59
70 7 0.09
71 26 0.32
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (72 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
ATGAATA
Found at i:24652095 original size:1 final size:1
Alignment explanation
Indices: 24652089--24652143 Score: 65
Period size: 1 Copynumber: 55.0 Consensus size: 1
24652079 ACTTCTATTT
* * * * *
24652089 AAAAAAAAAAAAAAAAAAAAGAAAAAGAGAAAAAAAAAAAAGAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24652144 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (1 bp):
A
Found at i:24652121 original size:21 final size:20
Alignment explanation
Indices: 24652090--24652143 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 20
24652080 CTTCTATTTA
*
24652090 AAAAAAAAAAAAAAAAAAAG
1 AAAAAAGAAAAAAAAAAAAG
24652110 AAAAAGAGAAAAAAAAAAAAG
1 AAAAA-AGAAAAAAAAAAAAG
24652131 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
24652144 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 13 0.41
21 19 0.59
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (20 bp):
AAAAAAGAAAAAAAAAAAAG
Found at i:24653142 original size:43 final size:43
Alignment explanation
Indices: 24653094--24653317 Score: 148
Period size: 43 Copynumber: 5.3 Consensus size: 43
24653084 CGCCTTAATC
*
24653094 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
* * * * * *
24653137 CCCTAAGCAGTAGTGG-AGCAGATCAAAGACT-C-G--CCTAAC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAA-ATTGCAGATCTTATCT
* *
24653176 CCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
* * * *
24653219 CCCTAAGCAGTAGTGG-AACAGATCAATGACCACT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAA--A--ATTGCAGATCTT-ATCT
* **
24653263 CCCTAAGCAGTA-GGTAACAGGTCAAAATTGTGGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
24653305 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
24653318 TGGAGCAGAT
Statistics
Matches: 138, Mismatches: 23, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
38 4 0.03
39 23 0.17
40 5 0.04
41 5 0.04
42 22 0.16
43 51 0.37
44 20 0.14
45 5 0.04
46 1 0.01
47 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
Found at i:24653230 original size:82 final size:84
Alignment explanation
Indices: 24653084--24653372 Score: 408
Period size: 82 Copynumber: 3.4 Consensus size: 84
24653074 CAAAATTCAG
*
24653084 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
24653149 GTGGAGCAGATCAAAGACT
66 GTGGAGCAGATCAAAGACT
* *
24653168 CGCC-TAA-CCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
* *
24653231 GTGGAACAGATCAATGACCACT
66 GTGGAGCAGATCAA--A-GACT
* **
24653253 CGCCTTAATCCCCTAAGCAGTA-GGTAACAGGTCAAAATTGTGGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
*
24653317 GTGGAGCAGATCGAAGA-T
66 GTGGAGCAGATCAAAGACT
*
24653335 GCGCCTTAA-CCCCTTAAGCCGTAGGGTAACAGGTTAAA
1 -CGCCTTAATCCCC-TAAGCAGTAGGGTAACAGGTTAAA
24653373 GCATAGCAAA
Statistics
Matches: 182, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
82 71 0.39
83 20 0.11
84 19 0.10
85 7 0.04
86 52 0.29
87 13 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCAAAGACT
Found at i:24653729 original size:207 final size:207
Alignment explanation
Indices: 24653374--24654581 Score: 2247
Period size: 207 Copynumber: 5.8 Consensus size: 207
24653364 CAGGTTAAAG
*
24653374 CATAGCAAATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * *
24653439 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
24653504 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
24653569 GGAGGGCAGACA
196 GGAGGGCAGACA
24653581 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
24653646 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
24653711 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
24653776 GGAGGGCAGACA
196 GGAGGGCAGACA
24653788 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
24653853 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
24653918 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
24653983 GGAGGGCAGACA
196 GGAGGGCAGACA
24653995 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
24654060 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
24654125 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
24654190 GGAGGGCAGACA
196 GGAGGGCAGACA
24654202 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
24654267 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAACAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
24654332 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
*
24654397 GGAGGACAGACA
196 GGAGGGCAGACA
* ** * * *
24654409 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * *
24654473 GCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
* *
24654538 TAAGATGATTTGGCATCTCTGTATTGTCAGGGAACAAATTGAAG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
24654582 AAGCAGATTT
Statistics
Matches: 982, Mismatches: 19, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
206 129 0.13
207 853 0.87
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (207 bp):
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
GGAGGGCAGACA
Found at i:24655043 original size:35 final size:35
Alignment explanation
Indices: 24654978--24655130 Score: 252
Period size: 35 Copynumber: 4.3 Consensus size: 35
24654968 CAATGATATG
* *
24654978 CAATCTTAGATGTGATATGGAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
24655014 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
24655049 CAATCTTATATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
24655084 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
24655121 CAATCTTAGA
1 CAATCTTAGA
24655131 AGATATGATT
Statistics
Matches: 111, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
35 83 0.75
36 15 0.14
37 13 0.12
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:24657055 original size:19 final size:18
Alignment explanation
Indices: 24657030--24657089 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
24657020 AATAAAATTT
24657030 AAATTTTTTAAAAAATAA
1 AAATTTTTTAAAAAATAA
* *
24657048 AGAA-TTTTGAAATAATAA
1 A-AATTTTTTAAAAAATAA
*
24657066 AAATTGTTTAGAATAAATAA
1 AAATTTTTTA-AA-AAATAA
24657086 AAAT
1 AAAT
24657090 ATAAAAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 2 0.06
18 18 0.55
19 4 0.12
20 9 0.27
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (18 bp):
AAATTTTTTAAAAAATAA
Found at i:24657998 original size:19 final size:18
Alignment explanation
Indices: 24657977--24658048 Score: 53
Period size: 19 Copynumber: 4.0 Consensus size: 18
24657967 AAATATTTAA
24657977 AATTATTTTTATTGTTTT
1 AATTATTTTTATTGTTTT
*
24657995 AAATT-TTAATTATT-TTTT
1 -AATTATT-TTTATTGTTTT
*
24658013 -ATTATTTTTCATAGGTTTT
1 AATTATTTTT-AT-TGTTTT
*
24658032 TATTATTTTTA-TGTTTT
1 AATTATTTTTATTGTTTT
24658049 TATTTAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
16 5 0.12
17 9 0.21
18 6 0.14
19 14 0.33
20 9 0.21
ACGTcount: A:0.24, C:0.01, G:0.06, T:0.69
Consensus pattern (18 bp):
AATTATTTTTATTGTTTT
Found at i:24658021 original size:9 final size:9
Alignment explanation
Indices: 24657978--24658052 Score: 50
Period size: 9 Copynumber: 8.3 Consensus size: 9
24657968 AATATTTAAA
24657978 ATTATTTTT
1 ATTATTTTT
*
24657987 ATT-GTTTT
1 ATTATTTTT
* *
24657995 A-AATTTTA
1 ATTATTTTT
24658003 ATTATTTTTT
1 ATTA-TTTTT
24658013 ATTATTTTT
1 ATTATTTTT
24658022 CA-TAGGTTTTT
1 -ATTA--TTTTT
24658033 ATTATTTTT
1 ATTATTTTT
*
24658042 A-TGTTTTT
1 ATTATTTTT
24658050 ATT
1 ATT
24658053 TAAAATCTGG
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
8 16 0.31
9 18 0.35
10 10 0.20
11 7 0.14
ACGTcount: A:0.23, C:0.01, G:0.05, T:0.71
Consensus pattern (9 bp):
ATTATTTTT
Found at i:24658047 original size:17 final size:17
Alignment explanation
Indices: 24658004--24658052 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 17
24657994 TAAATTTTAA
24658004 TTAT-TTTTTATTATTT
1 TTATGTTTTTATTATTT
24658020 TTCATAGGTTTTTATTATTT
1 TT-AT--GTTTTTATTATTT
24658040 TTATGTTTTTATT
1 TTATGTTTTTATT
24658053 TAAAATCTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.07
17 11 0.38
19 2 0.07
20 14 0.48
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (17 bp):
TTATGTTTTTATTATTT
Found at i:24663732 original size:39 final size:39
Alignment explanation
Indices: 24663678--24663821 Score: 182
Period size: 39 Copynumber: 3.7 Consensus size: 39
24663668 TTCAGTGATG
24663678 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
24663717 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * ** *
24663756 TATAACCGGACTTAAGGTCCACAAGCTACATGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
24663795 TATGTCCGGGC-TAAAGTCCTGCAGGCT
1 TATATCCGGACTTAAGGTCC-GCAGGCT
24663822 TCAAGCTGGT
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 7 0.08
39 83 0.92
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:24663830 original size:39 final size:39
Alignment explanation
Indices: 24663787--24663861 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 39
24663777 CAAGCTACAT
*
24663787 GCTGGAAATATGTCCGGG-CTAAAGTCCTGCAGGCTTCAA
1 GCTGGAAATAT-ACCGGGTCTAAAGTCCTGCAGGCTTCAA
* * * *
24663826 GCTGGTATTATACCGGGTTTAAATTCCTGCAGGCTT
1 GCTGGAAATATACCGGGTCTAAAGTCCTGCAGGCTT
24663862 GTGCTGGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 5 0.17
39 25 0.83
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
GCTGGAAATATACCGGGTCTAAAGTCCTGCAGGCTTCAA
Found at i:24663830 original size:78 final size:78
Alignment explanation
Indices: 24663678--24663841 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 78
24663668 TTCAGTGATG
* * * ** * * *
24663678 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCTGGACTTAAGGTCCGCAGGC
1 TATAACCGGACTTAAGGTCCACAAGCTACATGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
**
24663743 TATGTGCTGGAAT
66 TATAAGCTGGAAT
* *
24663756 TATAACCGGACTTAAGGTCCACAAGCTACATGCTGGAAATATGTCCGGGC-TAAAGTCCTGCAGG
1 TATAACCGGACTTAAGGTCCACAAGCTACATGCTGGAAATATATCCGGACTTAAAGTCC-GCAGG
*
24663820 CT-TCAAGCTGGTAT
65 CTAT-AAGCTGGAAT
24663834 TAT-ACCGG
1 TATAACCGG
24663842 GTTTAAATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
77 13 0.18
78 58 0.82
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (78 bp):
TATAACCGGACTTAAGGTCCACAAGCTACATGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATAAGCTGGAAT
Found at i:24664070 original size:13 final size:13
Alignment explanation
Indices: 24664052--24664077 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24664042 AAAGAAGAAT
24664052 ATATATATATAAA
1 ATATATATATAAA
24664065 ATATATATATAAA
1 ATATATATATAAA
24664078 TGTGATTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATATATATATAAA
Found at i:24679004 original size:37 final size:37
Alignment explanation
Indices: 24678897--24679005 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
24678887 AGCTCAGACG
* * *
24678897 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
24678934 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
24678971 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
24679006 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:24679276 original size:48 final size:48
Alignment explanation
Indices: 24679152--24679336 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
24679142 GCACATCGGC
*
24679152 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
24679202 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
24679250 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
24679298 TACATATTTCACATTAGCCATTCGGCTGTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
24679337 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 83 0.65
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:24679341 original size:98 final size:97
Alignment explanation
Indices: 24679152--24679335 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
24679142 GCACATCGGC
*
24679152 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
*
24679217 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTGTACCACATATGCATATCTCA
*
24679250 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
24679313 AGCCATTCGGCTGTACCACATAT
66 A-CCATTCGGCTGTACCACATAT
24679336 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 46 0.56
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTGTACCACATATGCATATCTCA
Found at i:24679385 original size:47 final size:47
Alignment explanation
Indices: 24679306--24679499 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
24679296 CATACATATT
* * *
24679306 TCACATTAGCCATTCGG-CTGTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCT-TATCACATATATGCATGTTCACATTCA
* * *
24679353 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
24679400 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
24679447 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
24679494 TCACAT
1 TCACAT
24679500 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 131 0.98
48 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:24679426 original size:22 final size:22
Alignment explanation
Indices: 24679399--24679470 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
24679389 GCTCACATTC
24679399 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
24679421 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
24679445 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
24679468 ATC
1 ATC
24679471 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:24679427 original size:94 final size:94
Alignment explanation
Indices: 24679259--24679499 Score: 283
Period size: 94 Copynumber: 2.6 Consensus size: 94
24679249 ATACATATTT
* * * *
24679259 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
*
24679321 GGCTGTACCACATATATGCATGTTCATATTCAC
62 GGCTGTACCACATATATGCATGTTCACATTCAC
* ** *
24679354 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGG-C
* *
24679419 T-TATCACATATATGCATGTTCACATTCAT
65 TGTACCACATATATGCATGTTCACATTCAC
* * *
24679448 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
24679500 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
93 1 0.01
94 91 0.72
95 21 0.17
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCT
GTACCACATATATGCATGTTCACATTCAC
Found at i:24683028 original size:185 final size:183
Alignment explanation
Indices: 24682667--24683033 Score: 698
Period size: 183 Copynumber: 2.0 Consensus size: 183
24682657 CATACCCTTG
24682667 TCTAACCATTCCTTTATCCCTCTCTGCAATTCCTTGTGTCTTGAATATGATATTATACATCTTGA
1 TCTAACCATTCCTTTATCCCTCTCTGCAATTCCTTGTGTCTTGAATATGATATTATACATCTTGA
* *
24682732 ATGTGCAGGAAACTGGTTATGTATATATATATAAAAGAAATATCTTAGAGAGACATAACAAATCA
66 ATGTGCAGGAAACTGGTTATATATATATATATAAAAGAAATAACTTAGAGAGACATAACAAATCA
24682797 ATTTTTATATTATTCAACTCATTCATGTGTTTCACTTTATCTAAGTTATAATA
131 ATTTTTATATTATTCAACTCATTCATGTGTTTCACTTTATCTAAGTTATAATA
24682850 TCTAACCATTCCTTTATCCCTCTCTGCAATTCCTTGTGTCTTGAATATGATATTATACATCTTGA
1 TCTAACCATTCCTTTATCCCTCTCTGCAATTCCTTGTGTCTTGAATATGATATTATACATCTTGA
24682915 ATGTGCAGGAAACTGGTTATATATATAAATATATAAAAGAAATAACTTAGAGAGACATAACAAAT
66 ATGTGCAGGAAACTGGTTATATATAT--ATATATAAAAGAAATAACTTAGAGAGACATAACAAAT
24682980 CAATTTTTATATTATTCAACTCATTCATGTGTTTCACTTTATCTAAGTTATAAT
129 CAATTTTTATATTATTCAACTCATTCATGTGTTTCACTTTATCTAAGTTATAAT
24683034 GCCATTTGAT
Statistics
Matches: 180, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
183 90 0.50
185 90 0.50
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.40
Consensus pattern (183 bp):
TCTAACCATTCCTTTATCCCTCTCTGCAATTCCTTGTGTCTTGAATATGATATTATACATCTTGA
ATGTGCAGGAAACTGGTTATATATATATATATAAAAGAAATAACTTAGAGAGACATAACAAATCA
ATTTTTATATTATTCAACTCATTCATGTGTTTCACTTTATCTAAGTTATAATA
Found at i:24685014 original size:36 final size:36
Alignment explanation
Indices: 24684959--24685064 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
24684949 CGGATATTTT
* *
24684959 CAAGCTCCTGAACAAGATATC-ATGTCTTCTCAATCC
1 CAAGCTCCTAAACGAGATATCTA-GTCTTCTCAATCC
*
24684995 CAAGCTCCTAAACGCGATATCTAGTCTT-T--A---
1 CAAGCTCCTAAACGAGATATCTAGTCTTCTCAATCC
*
24685025 CAAGCTCCTAAACGAGATATCTAGACTTCTCAATCC
1 CAAGCTCCTAAACGAGATATCTAGTCTTCTCAATCC
24685061 CAAG
1 CAAG
24685065 ATCTTGAATG
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
30 26 0.45
31 1 0.02
33 2 0.03
35 1 0.02
36 27 0.47
37 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.26
Consensus pattern (36 bp):
CAAGCTCCTAAACGAGATATCTAGTCTTCTCAATCC
Found at i:24685087 original size:66 final size:67
Alignment explanation
Indices: 24684959--24685123 Score: 167
Period size: 66 Copynumber: 2.5 Consensus size: 67
24684949 CGGATATTTT
* * * *
24684959 CAAGCTCCTGAACAAGATATC-ATGTCTTCTCAATCCCAAGCTCCTAAACGCGATATCTAGTCTT
1 CAAGCTCCTAAACAAGATATCTAGGTCTTCTCAATCCCAAGATCCTAAACGAGATATCTAGTCTT
24685023 TA
66 TA
* * * * * *
24685025 CAAGCTCCTAAACGAGATATCTA-GACTTCTCAATCCCAAGATCTTGAATGATATAT-TGAGTCT
1 CAAGCTCCTAAACAAGATATCTAGGTCTTCTCAATCCCAAGATCCTAAACGAGATATCT-AGTCT
*
24685088 TTC
65 TTA
* * *
24685091 CAAACTCTTAAACTAGATAT-TAGGTCTTCTCAA
1 CAAGCTCCTAAACAAGATATCTAGGTCTTCTCAA
24685124 GTTCCTGAAC
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
65 3 0.04
66 78 0.95
67 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (67 bp):
CAAGCTCCTAAACAAGATATCTAGGTCTTCTCAATCCCAAGATCCTAAACGAGATATCTAGTCTT
TA
Found at i:24688205 original size:17 final size:17
Alignment explanation
Indices: 24688183--24688216 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
24688173 GATATGATAC
24688183 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
24688200 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
24688217 CTGGGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:24688488 original size:17 final size:19
Alignment explanation
Indices: 24688466--24688508 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
24688456 ATTGAAATAT
24688466 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
24688483 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
24688502 AATCTTA
1 AATCTTA
24688509 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:24688498 original size:19 final size:19
Alignment explanation
Indices: 24688474--24688510 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24688464 ATAATCTTCA
24688474 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24688493 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
24688511 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:24688536 original size:22 final size:22
Alignment explanation
Indices: 24688474--24688533 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
24688464 ATAATCTTCA
24688474 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24688493 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
24688515 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
24688534 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:24688822 original size:17 final size:17
Alignment explanation
Indices: 24688800--24688833 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
24688790 TGTTTCCCGG
24688800 ATTTTTT-ATATATTTTA
1 ATTTTTTAATA-ATTTTA
24688817 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
24688834 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:24694649 original size:30 final size:30
Alignment explanation
Indices: 24694613--24694713 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
24694603 GACAAGATTG
* * *
24694613 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
24694643 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
24694671 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
24694700 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24694714 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:24694725 original size:29 final size:28
Alignment explanation
Indices: 24694642--24694717 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
24694632 AAAATTGTAC
* *
24694642 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
24694670 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
24694699 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
24694718 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:24696817 original size:17 final size:18
Alignment explanation
Indices: 24696795--24696829 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24696785 GATATGATAC
*
24696795 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
24696812 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
24696830 CCAGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:24697180 original size:17 final size:19
Alignment explanation
Indices: 24697119--24697172 Score: 94
Period size: 17 Copynumber: 2.9 Consensus size: 19
24697109 AATTATATCT
24697119 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
24697138 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
24697155 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
24697173 TGAAGATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.52
19 16 0.48
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:24701468 original size:14 final size:11
Alignment explanation
Indices: 24701451--24701481 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
24701441 GGCTGCTAAA
*
24701451 GAAGAATGCTG
1 GAAGAAGGCTG
24701462 GAAGAAGGCTG
1 GAAGAAGGCTG
24701473 GAAGAAGGC
1 GAAGAAGGC
24701482 CATGGAAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.39, C:0.10, G:0.42, T:0.10
Consensus pattern (11 bp):
GAAGAAGGCTG
Found at i:24705152 original size:29 final size:29
Alignment explanation
Indices: 24705119--24705278 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
24705109 GTGACGAGAT
24705119 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24705148 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24705177 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
24705206 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
24705235 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
24705264 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
24705279 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:24713309 original size:29 final size:29
Alignment explanation
Indices: 24713276--24713435 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
24713266 GTGACGAGAT
24713276 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24713305 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24713334 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
24713363 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
24713392 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
24713421 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
24713436 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:24715536 original size:15 final size:15
Alignment explanation
Indices: 24715516--24715545 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24715506 GAATGTGTGT
24715516 ATATATATAAATATA
1 ATATATATAAATATA
*
24715531 ATATATATATATATA
1 ATATATATAAATATA
24715546 CACAATTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATATATAAATATA
Found at i:24718891 original size:20 final size:18
Alignment explanation
Indices: 24718854--24718894 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
24718844 AAAGAATATG
*
24718854 AAAAAAAATTATTTTTTT
1 AAAAAAAATTATTCTTTT
24718872 AAAAAAAATTATGTACTTTT
1 AAAAAAAATTAT-T-CTTTT
24718892 AAA
1 AAA
24718895 GGATAAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 1 0.05
20 7 0.35
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (18 bp):
AAAAAAAATTATTCTTTT
Found at i:24727296 original size:35 final size:35
Alignment explanation
Indices: 24727250--24727321 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
24727240 CAATTAAATT
24727250 ATACTAACAAATGGTTAGAAAAAGTAGCCCTGGAC
1 ATACTAACAAATGGTTAGAAAAAGTAGCCCTGGAC
*
24727285 ATACTAACAAATGGTTGGAAAAAGTAGCCCTGGAC
1 ATACTAACAAATGGTTAGAAAAAGTAGCCCTGGAC
24727320 AT
1 AT
24727322 TTTTCCTAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (35 bp):
ATACTAACAAATGGTTAGAAAAAGTAGCCCTGGAC
Found at i:24735290 original size:10 final size:10
Alignment explanation
Indices: 24735271--24735346 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
24735261 GATACTTAGT
*
24735271 TTAATTTTAA
1 TTAATCTTAA
24735281 TTAATCTTAA
1 TTAATCTTAA
*
24735291 TTAAT-TTAC
1 TTAATCTTAA
* *
24735300 TTAATCATGA
1 TTAATCTTAA
*
24735310 TTAAT-TAAA
1 TTAATCTTAA
24735319 CCTTAATCCTTAA
1 --TTAAT-CTTAA
24735332 TTAA-CTTAA
1 TTAATCTTAA
24735341 GTTAAT
1 -TTAAT
24735347 GACATTTAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
9 14 0.28
10 24 0.48
11 9 0.18
13 3 0.06
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (10 bp):
TTAATCTTAA
Found at i:24736911 original size:19 final size:18
Alignment explanation
Indices: 24736889--24736963 Score: 71
Period size: 18 Copynumber: 4.0 Consensus size: 18
24736879 AAATTTAAAT
24736889 TTTTTTAAAAAATAAATAA
1 TTTTTTAAAAAATAAA-AA
* *
24736908 -TTTTGAAATAATAAAAA
1 TTTTTTAAAAAATAAAAA
*
24736925 TTGTTTAGAATAAATAAAAA
1 TTTTTTA-AA-AAATAAAAA
*
24736945 TATTTTAAAAATATAAAAA
1 TTTTTTAAAAA-ATAAAAA
24736964 AATTTGCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
17 2 0.04
18 19 0.42
19 11 0.24
20 13 0.29
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (18 bp):
TTTTTTAAAAAATAAAAA
Found at i:24736925 original size:20 final size:20
Alignment explanation
Indices: 24736902--24736968 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 20
24736892 TTTAAAAAAT
24736902 AAATAATTTTGAAATAATAA
1 AAATAATTTTGAAATAATAA
** *
24736922 AAATTGTTTAG-AATAAATAA
1 AAATAATTTTGAAAT-AATAA
24736942 AAAT-ATTTT-AAA-AATATA
1 AAATAATTTTGAAATAATA-A
*
24736960 AAAAAATTT
1 AAATAATTT
24736969 GCAAAAATTC
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
17 4 0.11
18 4 0.11
19 12 0.32
20 17 0.46
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
AAATAATTTTGAAATAATAA
Found at i:24736974 original size:19 final size:19
Alignment explanation
Indices: 24736938--24736976 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24736928 TTTAGAATAA
* *
24736938 ATAAAAATATTTTAAAAAT
1 ATAAAAAAATTTGAAAAAT
24736957 ATAAAAAAATTTGCAAAAAT
1 ATAAAAAAATTTG-AAAAAT
24736977 TCATTATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAAAAAAATTTGAAAAAT
Found at i:24737891 original size:20 final size:18
Alignment explanation
Indices: 24737868--24737914 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 18
24737858 ATTTTAATGA
24737868 GTTTTTATTATTTTTCATAG
1 GTTTTTATTATTTTT--TAG
*
24737888 GTTTTTATTATTTTTTAT
1 GTTTTTATTATTTTTTAG
24737906 GTTTTTATT
1 GTTTTTATT
24737915 TAAAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.17, C:0.02, G:0.09, T:0.72
Consensus pattern (18 bp):
GTTTTTATTATTTTTTAG
Found at i:24738248 original size:19 final size:19
Alignment explanation
Indices: 24738223--24738302 Score: 110
Period size: 19 Copynumber: 4.3 Consensus size: 19
24738213 AATCTTTAAG
24738223 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* * *
24738242 AATATGCAATTTTAGATGT
1 GATATGCAATCTTAGATAT
24738261 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
24738280 GATA--CAATTTTAGATAT
1 GATATGCAATCTTAGATAT
24738297 GATATG
1 GATATG
24738303 ATATGATATG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
17 16 0.31
19 36 0.69
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24738300 original size:36 final size:37
Alignment explanation
Indices: 24738223--24738302 Score: 126
Period size: 38 Copynumber: 2.2 Consensus size: 37
24738213 AATCTTTAAG
*
24738223 GATATGCAATCTTAGATATAATATGCAATTTTAGATGT
1 GATATGCAATCTTAGATATAATA-GCAATTTTAGATAT
*
24738261 GATATGCAATCTTAGATATGATA-CAATTTTAGATAT
1 GATATGCAATCTTAGATATAATAGCAATTTTAGATAT
24738297 GATATG
1 GATATG
24738303 ATATGATATG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
36 18 0.45
38 22 0.55
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (37 bp):
GATATGCAATCTTAGATATAATAGCAATTTTAGATAT
Found at i:24744847 original size:17 final size:17
Alignment explanation
Indices: 24744824--24744863 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
24744814 CTTCTATTTT
24744824 AAAAAAAAAGGAAAAAAG
1 AAAAAAAAA-GAAAAAAG
* *
24744842 AAAAAAAAATAAAAAAT
1 AAAAAAAAAGAAAAAAG
24744859 AAAAA
1 AAAAA
24744864 TTGAGAGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.88, C:0.00, G:0.07, T:0.05
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAAG
Found at i:24745999 original size:84 final size:84
Alignment explanation
Indices: 24745904--24746113 Score: 368
Period size: 84 Copynumber: 2.5 Consensus size: 84
24745894 TAACAGGTTC
24745904 GCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACTC-GCCTTAATCCCCTAAGCAG
1 GCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGAC-CAGCCTTAATCCCCTAAGCAG
24745968 TAGGGTAACAGGTTAAATTT
65 TAGGGTAACAGGTTAAATTT
* *
24745988 GCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
1 GCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
24746053 AGGGTAACAGGTTAAATTT
66 AGGGTAACAGGTTAAATTT
* *
24746072 ACAGATCTTATCTCCTTAAGCAGTAATGGAGCAGATCGAAGA
1 GCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGA
24746114 GTAACAGGTT
Statistics
Matches: 119, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
83 1 0.01
84 118 0.99
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (84 bp):
GCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
AGGGTAACAGGTTAAATTT
Found at i:24746129 original size:137 final size:137
Alignment explanation
Indices: 24745988--24746250 Score: 490
Period size: 137 Copynumber: 1.9 Consensus size: 137
24745978 GGTTAAATTT
24745988 GCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
1 GCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
*
24746053 AGGGTAACAGGTTAAATTTACAGATCTTATCTCCTTAAGCAGTAATGGAGCAGATCGAAGAGTAA
66 AGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGAGTAA
24746118 CAGGTTC
131 CAGGTTC
* *
24746125 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGT
1 GCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
*
24746190 AGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
66 AGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGA
24746251 CCGACCTTAA
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 122 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (137 bp):
GCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACCAGCCTTAATCCCCTAAGCAGT
AGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGAGTAA
CAGGTTC
Found at i:24746195 original size:221 final size:220
Alignment explanation
Indices: 24745812--24746331 Score: 923
Period size: 221 Copynumber: 2.4 Consensus size: 220
24745802 AAAATTTAGT
*
24745812 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAA
*
24745877 TGGAGCAGATCGAAGAGTAACAGGTTCGCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCG
66 TGGAGCAGATCGAAGAGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
24745942 AAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAA
131 AAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAA
24746007 GCAATAGTGGAGCAGATCGAAGACC
196 GCAATAGTGGAGCAGATCGAAGACC
* *
24746032 AGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCTTAAGCAGTA
1 -GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
24746097 ATGGAGCAGATCGAAGAGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
65 ATGGAGCAGATCGAAGAGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
24746162 GAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTA
130 GAAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTA
*
24746227 AGCAGTAGTGGAGCAGATCGAAGACC
195 AGCAATAGTGGAGCAGATCGAAGACC
* * *
24746253 GACCTTAATCCCCTAAGCAGTAGGGTGACAGGTTAAATTCGCAGATCTTATCTCCCTAAGTAGTA
1 G-CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
24746318 ACGGAGCAGATCGA
65 ATGGAGCAGATCGA
24746332 TGATGACTTG
Statistics
Matches: 285, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
220 1 0.00
221 284 1.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (220 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAA
TGGAGCAGATCGAAGAGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
AAGACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAA
GCAATAGTGGAGCAGATCGAAGACC
Found at i:24746220 original size:84 final size:84
Alignment explanation
Indices: 24746125--24746535 Score: 587
Period size: 84 Copynumber: 4.9 Consensus size: 84
24746115 TAACAGGTTC
24746125 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGT
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGT
24746190 AGGGTAACAGGTTAAATTT
66 AGGGTAACAGGTTAAATTT
*
24746209 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CCGACCTTAATCCCCTAAGCAG
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCG-CCTTAATCCCCTAAGCAG
* *
24746273 TAGGGTGACAGGTTAAATTC
65 TAGGGTAACAGGTTAAATTT
* ** **
24746293 GCAGATCTTATCTCCCTAAGTAGTAACGGAGCAGATCGATGATGACTTGCCTTAATCCCCTAAGC
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACCCGCCTTAATCCCCTAAGC
*
24746358 AGTAGGGAAACAGGTTAAATTT
63 AGTAGGGTAACAGGTTAAATTT
* *
24746380 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACCCGCCTTAATCCCCTGAGCAGT
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGT
24746445 AGGGTAACAGGTTAAATTT
66 AGGGTAACAGGTTAAATTT
* * * * *
24746464 GCAGATCTTA--TCCCTAAGCAGTAGCGGAGCAGATTGAAGACAATGCACCTTAA-CCCTTAAGC
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC---CCGCCTTAATCCCCTAAGC
24746526 AGTAGGGTAA
63 AGTAGGGTAA
24746536 TAGACCAAAG
Statistics
Matches: 292, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
82 28 0.10
83 3 0.01
84 178 0.61
85 8 0.03
86 1 0.00
87 73 0.25
88 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (84 bp):
GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGT
AGGGTAACAGGTTAAATTT
Found at i:24746376 original size:171 final size:168
Alignment explanation
Indices: 24746122--24746504 Score: 601
Period size: 171 Copynumber: 2.3 Consensus size: 168
24746112 GAGTAACAGG
*
24746122 TTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGC
1 TTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGC
* *
24746187 AGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-
66 AGTAGGGAAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAAC
*
24746251 CCGACCTTAATCCCCTAAGCAGTAGGGTGACAGGTTAAA
131 CCG-CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
* * **
24746290 TTCGCAGATCTTATCTCCCTAAGTAGTAACGGAGCAGATCGATGATGACTTGCCTTAATCCCCTA
1 TTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGA--A-GACCCGCCTTAATCCCCTA
*
24746355 AGCAGTAGGGAAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
63 AGCAGTAGGGAAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
*
24746420 AACCCGCCTTAATCCCCTGAGCAGTAGGGTAACAGGTTAAA
128 AACCCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
* *
24746461 TTTGCAGATCTTA--TCCCTAAGCAGTAGCGGAGCAGATTGAAGAC
1 TTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
24746505 AATGCACCTT
Statistics
Matches: 197, Mismatches: 14, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
166 3 0.02
167 1 0.01
168 39 0.20
169 24 0.12
170 1 0.01
171 126 0.64
172 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (168 bp):
TTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGC
AGTAGGGAAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAAC
CCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
Found at i:24747319 original size:19 final size:19
Alignment explanation
Indices: 24747295--24747374 Score: 119
Period size: 19 Copynumber: 4.3 Consensus size: 19
24747285 AATCCTTAAG
24747295 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
24747314 GATATGCAATTTTAGATGT
1 GATATGCAATCTTAGATAT
24747333 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
24747352 GATA--CAATTTTAGATAT
1 GATATGCAATCTTAGATAT
24747369 GATATG
1 GATATG
24747375 ATATGATATG
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
17 16 0.30
19 38 0.70
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24747372 original size:36 final size:37
Alignment explanation
Indices: 24747295--24747374 Score: 135
Period size: 38 Copynumber: 2.2 Consensus size: 37
24747285 AATCCTTAAG
*
24747295 GATATGCAATCTTAGATATGATATGCAATTTTAGATGT
1 GATATGCAATCTTAGATATGATA-GCAATTTTAGATAT
24747333 GATATGCAATCTTAGATATGATA-CAATTTTAGATAT
1 GATATGCAATCTTAGATATGATAGCAATTTTAGATAT
24747369 GATATG
1 GATATG
24747375 ATATGATATG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
36 18 0.44
38 23 0.56
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39
Consensus pattern (37 bp):
GATATGCAATCTTAGATATGATAGCAATTTTAGATAT
Found at i:24759653 original size:53 final size:53
Alignment explanation
Indices: 24759585--24759697 Score: 181
Period size: 53 Copynumber: 2.1 Consensus size: 53
24759575 ACCAATCCTT
* * *
24759585 ACACGCCCGTGTCATATACCTGTGTCAAGCGTGCACTGCCTGATTCGTCGATC
1 ACACACCCGTGTCATACACCTGTGTCAAGCGCGCACTGCCTGATTCGTCGATC
* *
24759638 ACACACCCGTGTCATACACCTGTGTCACGCGCGCACTGCCTGGTTCGTCGATC
1 ACACACCCGTGTCATACACCTGTGTCAAGCGCGCACTGCCTGATTCGTCGATC
24759691 ACACACC
1 ACACACC
24759698 TGTATACTGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.19, C:0.36, G:0.21, T:0.23
Consensus pattern (53 bp):
ACACACCCGTGTCATACACCTGTGTCAAGCGCGCACTGCCTGATTCGTCGATC
Found at i:24764901 original size:2 final size:2
Alignment explanation
Indices: 24764894--24764925 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
24764884 AGGAAACTGG
24764894 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24764926 AAAGAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24766699 original size:2 final size:2
Alignment explanation
Indices: 24766692--24766724 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
24766682 TTTGAATGTG
*
24766692 TA TA TA TA TA TA AA TA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24766725 CACAATTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:24770036 original size:19 final size:17
Alignment explanation
Indices: 24770001--24770039 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
24769991 AAGAATATGA
*
24770001 AAAAAAAATTATTTTTT
1 AAAAAAAATTATCTTTT
24770018 AAAAAAAATATATACTTTT
1 AAAAAAAAT-TAT-CTTTT
24770037 AAA
1 AAA
24770040 GGGTAAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAAAAAATTATCTTTT
Found at i:24778159 original size:40 final size:40
Alignment explanation
Indices: 24778051--24778260 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24778041 CGGGATTTAA
* * * * *
24778051 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24778091 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24778131 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24778171 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24778211 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24778251 CCGGATATAT
1 CCGGATATAT
24778261 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24783368 original size:30 final size:29
Alignment explanation
Indices: 24783323--24783380 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
24783313 TTTAATTTAC
24783323 TTTAAATACTTTATATATTATTATTATTT
1 TTTAAATACTTTATATATTATTATTATTT
* *
24783352 TTTATAATAGTTTATATATTATTTTTATT
1 TTTA-AATACTTTATATATTATTATTATT
24783381 ATCCATTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTAAATACTTTATATATTATTATTATTT
Found at i:24783452 original size:14 final size:12
Alignment explanation
Indices: 24783423--24783493 Score: 60
Period size: 12 Copynumber: 6.0 Consensus size: 12
24783413 ATCTATAAAT
24783423 TATATTTTATTA
1 TATATTTTATTA
*
24783435 TATATTTTATTG
1 TATATTTTATTA
*
24783447 TATATATTTCTT-
1 TATAT-TTTATTA
24783459 TATATTTT-TTA
1 TATATTTTATTA
*
24783470 TAAATTATATATTA
1 TATATT-T-TATTA
24783484 T-TA-TTTATTA
1 TATATTTTATTA
24783494 AATTTATAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.14
11 9 0.18
12 23 0.46
13 7 0.14
14 4 0.08
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:24783478 original size:26 final size:26
Alignment explanation
Indices: 24783416--24783492 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 26
24783406 ATATCTTATC
24783416 TATAAATTATATTTTATTATATATTT
1 TATAAATTATATTTTATTATATATTT
** *
24783442 TAT-TGTATATATTTCT-TTATATTTTT
1 TATAAAT-TATATTT-TATTATATATTT
* *
24783468 TATAAATTATATATTATTATTTATT
1 TATAAATTATATTTTATTATATATT
24783493 AAATTTATAA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
25 2 0.05
26 35 0.90
27 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (26 bp):
TATAAATTATATTTTATTATATATTT
Found at i:24783490 original size:21 final size:20
Alignment explanation
Indices: 24783461--24783501 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
24783451 TATTTCTTTA
*
24783461 TATTTTTTATAAATTATATAT
1 TATTATTTATAAATT-TATAT
24783482 TATTATTTATTAAATTTATA
1 TATTATTTA-TAAATTTATA
24783502 AATGGTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTATTTATAAATTTATAT
Found at i:24783619 original size:13 final size:13
Alignment explanation
Indices: 24783601--24783650 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
24783591 GCATCTTCTC
24783601 TTTTATTATATAT
1 TTTTATTATATAT
*
24783614 TTTTATTATGTAT
1 TTTTATTATATAT
* * *
24783627 GTATATTATTTA-
1 TTTTATTATATAT
24783639 TTTTATTATATA
1 TTTTATTATATA
24783651 AAAATTACTC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 9 0.30
13 21 0.70
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (13 bp):
TTTTATTATATAT
Found at i:24783750 original size:20 final size:17
Alignment explanation
Indices: 24783724--24783772 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 17
24783714 ATGTTTAAAA
24783724 ATTTTATTATATGATATAT
1 ATTTTATTATAT--TATAT
*
24783743 ATTTTTATTATATTATTT
1 A-TTTTATTATATTATAT
24783761 ATTTTATTATAT
1 ATTTTATTATAT
24783773 AAAATATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 11 0.39
18 5 0.18
19 1 0.04
20 11 0.39
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
ATTTTATTATATTATAT
Found at i:24783780 original size:17 final size:17
Alignment explanation
Indices: 24783719--24783781 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
24783709 TATACATGTT
24783719 TAAAA-ATTTTATTATA
1 TAAAATATTTTATTATA
*
24783735 TGATATATATTTTTATTATA
1 T-A-AAATA-TTTTATTATA
* **
24783755 TTATTTATTTTATTATA
1 TAAAATATTTTATTATA
24783772 TAAAATATTT
1 TAAAATATTT
24783782 GTTACATTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
16 1 0.03
17 18 0.49
18 6 0.16
19 1 0.03
20 11 0.30
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
TAAAATATTTTATTATA
Found at i:24783938 original size:27 final size:26
Alignment explanation
Indices: 24783878--24783961 Score: 70
Period size: 27 Copynumber: 3.4 Consensus size: 26
24783868 TAACATTCCT
*
24783878 TATA-ATA-TTTATCTTTCTTATATA
1 TATATATATTTTATCTTTATTATATA
* * *
24783902 TTTTTTTATTTTATACTTTATTATATA
1 TATATATATTTTAT-CTTTATTATATA
* *
24783929 TATATATATTTTGT-TTT-TTATATG
1 TATATATATTTTATCTTTATTATATA
24783953 T-TATATATT
1 TATATATATT
24783962 ATATATTAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
23 8 0.17
24 9 0.19
25 5 0.10
26 5 0.10
27 21 0.44
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (26 bp):
TATATATATTTTATCTTTATTATATA
Found at i:24783965 original size:34 final size:35
Alignment explanation
Indices: 24783896--24783967 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
24783886 TTATCTTTCT
*
24783896 TATATATTTTTTTATTTTATACTTTATTATATATA
1 TATATATTTTGTTATTTTATACTTTATTATATATA
24783931 TATATATTTTGTT-TTTTATA-TGTTA-TATAT-TA
1 TATATATTTTGTTATTTTATACT-TTATTATATATA
24783963 TATAT
1 TATAT
24783968 TAATTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
32 7 0.20
33 6 0.17
34 10 0.29
35 12 0.34
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (35 bp):
TATATATTTTGTTATTTTATACTTTATTATATATA
Found at i:24789890 original size:25 final size:25
Alignment explanation
Indices: 24789862--24789912 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
24789852 CTATTTCAAA
24789862 AAAAAAG-AAAAGAAAAGAAAAATGG
1 AAAAAAGAAAAAGAAAA-AAAAATGG
** *
24789887 AAAATGGAAAAAGAGAAAAAAATGG
1 AAAAAAGAAAAAGAAAAAAAAATGG
24789912 A
1 A
24789913 GAGGCCAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.06
Consensus pattern (25 bp):
AAAAAAGAAAAAGAAAAAAAAATGG
Found at i:24791604 original size:129 final size:129
Alignment explanation
Indices: 24791370--24791606 Score: 341
Period size: 129 Copynumber: 1.8 Consensus size: 129
24791360 TTTAGAGGAT
* * *
24791370 ATGAATGAAATCATGAAAGGATACTCGATTATTTTGAGCAAATGTGAAATTGTAACCCAACACGT
1 ATGAATGAAATCATCAAAGGATACTCGATTATTTTGAGCAAACGCGAAATTGTAACCCAACACGT
* * ** * * *
24791435 TAGGGCTCGATTCCGTGAATTACTGAATATCGAATGTCGTCTTCTTTCGAGAATTTTAACAGAC
66 TAGGGCACGATTCCGCGAATTACCAAACATCAAATCTCGTCTTCTTTCGAGAATTTTAACAGAC
* *
24791499 ATGAATGAAAT-TTCAAAGCGATATTCGATTATTTTGAGCAAACGCGAAATTGTAACCCAACACG
1 ATGAATGAAATCATCAAAG-GATACTCGATTATTTTGAGCAAACGCGAAATTGTAACCCAACACG
*
24791563 TTAGGGCACGATTCCGCGAATTGCCAAACATCAAATCTCGTCTT
65 TTAGGGCACGATTCCGCGAATTACCAAACATCAAATCTCGTCTT
24791607 TCGTTTTGAA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
128 5 0.05
129 89 0.95
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (129 bp):
ATGAATGAAATCATCAAAGGATACTCGATTATTTTGAGCAAACGCGAAATTGTAACCCAACACGT
TAGGGCACGATTCCGCGAATTACCAAACATCAAATCTCGTCTTCTTTCGAGAATTTTAACAGAC
Found at i:24792773 original size:8 final size:8
Alignment explanation
Indices: 24792760--24792811 Score: 54
Period size: 8 Copynumber: 6.8 Consensus size: 8
24792750 AAATAGATAG
24792760 ATGTATAT
1 ATGTATAT
24792768 ATGTATAT
1 ATGTATAT
*
24792776 ATATATAT
1 ATGTATAT
*
24792784 ATATATAT
1 ATGTATAT
*
24792792 A-GT-TAC
1 ATGTATAT
*
24792798 ATGTACAT
1 ATGTATAT
24792806 ATGTAT
1 ATGTAT
24792812 TTACATATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 3 0.08
7 3 0.08
8 30 0.83
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (8 bp):
ATGTATAT
Done.