Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 99 of 427
Found at i:26221117 original size:25 final size:26
Alignment explanation
Indices: 26221083--26221134 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26221073 TCAAACATGC
26221083 ATTTAGGTAATTTAAC-CCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
* *
26221108 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
26221134 A
1 A
26221135 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATTTAACTCCTAGGGGT
Found at i:26222647 original size:26 final size:26
Alignment explanation
Indices: 26222611--26222694 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
26222601 CATGAAATTC
26222611 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
26222637 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
26222663 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
26222689 TTATCA
1 TTATCA
26222695 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:26226638 original size:136 final size:135
Alignment explanation
Indices: 26226394--26226677 Score: 541
Period size: 136 Copynumber: 2.1 Consensus size: 135
26226384 TATTGGGCCT
**
26226394 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
26226459 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAA-AAC
26226524 ATATGC
130 ATATGC
26226530 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
26226595 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAAACA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAAACA
26226660 TATGC
131 TATGC
26226665 AAGCCCATTTGGG
1 AAGCCCATTTGGG
26226678 GAGACTACTC
Statistics
Matches: 146, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 22 0.15
136 124 0.85
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (135 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAAACA
TATGC
Found at i:26226713 original size:21 final size:21
Alignment explanation
Indices: 26226684--26226731 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
26226674 TGGGGAGACT
*
26226684 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
26226705 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
26226726 ACTCCA
1 ACTCCA
26226732 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:26226961 original size:25 final size:27
Alignment explanation
Indices: 26226924--26226976 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26226914 TCAAACATGC
26226924 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
26226950 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
26226976 A
1 A
26226977 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:26228491 original size:26 final size:26
Alignment explanation
Indices: 26228455--26228538 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
26228445 CATGAAATTC
26228455 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
26228481 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
26228507 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
26228533 TTATCA
1 TTATCA
26228539 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:26230517 original size:21 final size:21
Alignment explanation
Indices: 26230487--26230552 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
26230477 ATAACATTGC
*
26230487 ATAAACATATACATATATATA
1 ATAAACATATACACATATATA
* * *
26230508 TTAAAGATATATACATATATA
1 ATAAACATATACACATATATA
26230529 ATAAACATATACTA-ATA-ATA
1 ATAAACATATAC-ACATATATA
26230549 ATAA
1 ATAA
26230553 TAATTATAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 7 0.19
21 29 0.78
22 1 0.03
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAAACATATACACATATATA
Found at i:26230547 original size:3 final size:3
Alignment explanation
Indices: 26230541--26230573 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
26230531 AAACATATAC
*
26230541 TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26230574 AAAGATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:26230782 original size:11 final size:10
Alignment explanation
Indices: 26230755--26230806 Score: 63
Period size: 9 Copynumber: 5.1 Consensus size: 10
26230745 TAGGGATAAA
26230755 AATAGATATAAT
1 AATA-ATAT-AT
26230767 AATAATATAT
1 AATAATATAT
26230777 ACATAATATAT
1 A-ATAATATAT
26230788 AA-AATATAT
1 AATAATATAT
26230797 -ATAATATAT
1 AATAATATAT
26230806 A
1 A
26230807 CATATGTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
8 1 0.03
9 14 0.38
10 4 0.11
11 14 0.38
12 4 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
AATAATATAT
Found at i:26230804 original size:18 final size:18
Alignment explanation
Indices: 26230648--26230806 Score: 80
Period size: 18 Copynumber: 8.6 Consensus size: 18
26230638 AAATAATAGG
26230648 TATAATA-AT-AAATATA
1 TATAATATATAAAATATA
* *
26230664 -ATGATATATGAAA-ATA
1 TATAATATATAAAATATA
* * *
26230680 -ATACTATGTAAAGTATA
1 TATAATATATAAAATATA
26230697 TATACCCATATAATAAAATATA
1 TATA---ATAT-ATAAAATATA
*
26230719 TGTACTAATAT-TAATAATAAA
1 --TA-TAATATATAA-AATATA
* *
26230740 TATAATAGGGATAAAAATAGA
1 TATAATA--TAT-AAAATATA
*
26230761 TATAATA-ATAATATATA
1 TATAATATATAAAATATA
*
26230778 CATAATATATAAAATATA
1 TATAATATATAAAATATA
26230796 TATAATATATA
1 TATAATATATA
26230807 CATATGTTAG
Statistics
Matches: 109, Mismatches: 17, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
15 5 0.05
16 13 0.12
17 18 0.17
18 29 0.27
19 2 0.02
20 3 0.03
21 21 0.19
22 14 0.13
24 2 0.02
25 2 0.02
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (18 bp):
TATAATATATAAAATATA
Found at i:26230949 original size:23 final size:25
Alignment explanation
Indices: 26230923--26230989 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 25
26230913 AGCATTAGAA
*
26230923 ATATACATAC-AATAGTA-TAAAAG
1 ATATACATACTAATAATATTAAAAG
* *
26230946 ATATATA-ACTAATAATATTAAAAT
1 ATATACATACTAATAATATTAAAAG
*
26230970 ATATACATAATAATATATAT
1 ATATACATACTAATA-ATAT
26230990 AAATATAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 2 0.06
23 12 0.34
24 11 0.31
25 6 0.17
26 4 0.11
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (25 bp):
ATATACATACTAATAATATTAAAAG
Found at i:26230973 original size:22 final size:24
Alignment explanation
Indices: 26230923--26231045 Score: 80
Period size: 25 Copynumber: 5.1 Consensus size: 24
26230913 AGCATTAGAA
* *
26230923 ATATACAT-ACAATAGTATAAAAGAT
1 ATATACATAATAATA-TATATAA-AT
26230948 ATATA-ACTAATAATAT-TA-AAAT
1 ATATACA-TAATAATATATATAAAT
26230970 ATATACATAATAATATATATAAAT
1 ATATACATAATAATATATATAAAT
* *
26230994 ATAATA-TTAA-AATATATATACAT
1 AT-ATACATAATAATATATATAAAT
* *
26231017 AACATATATGAA-AATATATATATAAT
1 -ATATACAT-AATAATATATATA-AAT
26231043 ATA
1 ATA
26231046 GTATTAAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
22 16 0.20
23 20 0.25
24 14 0.17
25 24 0.30
26 7 0.09
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (24 bp):
ATATACATAATAATATATATAAAT
Found at i:26230979 original size:26 final size:25
Alignment explanation
Indices: 26230923--26230996 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 25
26230913 AGCATTAGAA
* *
26230923 ATATACAT-AC-AATAGTATAAAAG
1 ATATACATAACTAATAATATAAAAT
26230946 ATAT--ATAACTAATAATATTAAAAT
1 ATATACATAACTAATAATA-TAAAAT
26230970 ATATACATAA-TAAT-ATATATAAAT
1 ATATACATAACTAATAATATA-AAAT
26230994 ATA
1 ATA
26230997 ATATTAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 12 0.28
24 19 0.44
25 4 0.09
26 4 0.09
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (25 bp):
ATATACATAACTAATAATATAAAAT
Found at i:26231011 original size:23 final size:24
Alignment explanation
Indices: 26230981--26231081 Score: 93
Period size: 23 Copynumber: 4.2 Consensus size: 24
26230971 TATACATAAT
26230981 AATATATATAAATATA-ATATTAA
1 AATATATATAAATATACATATTAA
*
26231004 AATATATATACATA-ACATATATGAA
1 AATATATATAAATATACATAT-T-AA
*
26231029 AATATATATATAATATA-GTATT-A
1 AATATATATA-AATATACATATTAA
* *
26231052 AATATTTACAATATATACATATTAGA
1 AATATATATAA-ATATACATATTA-A
26231078 AATA
1 AATA
26231082 AAAAAAGCGA
Statistics
Matches: 63, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
22 2 0.03
23 31 0.49
24 5 0.08
25 13 0.21
26 11 0.17
27 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (24 bp):
AATATATATAAATATACATATTAA
Found at i:26231099 original size:3 final size:3
Alignment explanation
Indices: 26231093--26231167 Score: 62
Period size: 3 Copynumber: 23.7 Consensus size: 3
26231083 AAAAAGCGAC
* * *
26231093 TAA TAA TAA TAC TACA TAAA TATA TACA TAA TAA -AA CATA TAC TAA
1 TAA TAA TAA TAA TA-A T-AA TA-A TA-A TAA TAA TAA TA-A TAA TAA
*
26231139 TAA TAA TAA TAT TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26231168 TAAATAATGG
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 2 0.03
3 45 0.76
4 11 0.19
5 1 0.02
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26231173 original size:15 final size:16
Alignment explanation
Indices: 26231093--26231199 Score: 75
Period size: 18 Copynumber: 6.8 Consensus size: 16
26231083 AAAAAGCGAC
26231093 TAATAATAATACTAC-A
1 TAATAATAATA-TACAA
26231109 T-A-AAT-ATATAC-A
1 TAATAATAATATACAA
*
26231121 TAATAAAACATATACTAA
1 TAATAATA-ATATAC-AA
*
26231139 TAATAATAATATTAATAA
1 TAATAATAATA-T-ACAA
26231157 TAATAATAATATA-AA
1 TAATAATAATATACAA
**
26231172 TAATGGTAA-ATACAA
1 TAATAATAATATACAA
26231187 TAATAAGTAATAT
1 TAATAA-TAATAT
26231200 TTAAAAAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 21
0.72 0.07 0.21
Matches are distributed among these distances:
12 5 0.07
13 4 0.05
14 8 0.11
15 16 0.22
16 11 0.15
17 6 0.08
18 22 0.30
19 1 0.01
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.33
Consensus pattern (16 bp):
TAATAATAATATACAA
Found at i:26232970 original size:95 final size:88
Alignment explanation
Indices: 26232804--26233286 Score: 417
Period size: 87 Copynumber: 5.4 Consensus size: 88
26232794 GTAATCCTGA
* * *
26232804 GCTCAACTCACTTCTCGCAATATGAGCTGACTCTTTTTTAAAAAATAGACATTAAAAATAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTAAAAAA-AGACATTAAAAACAGAAAT
*
26232869 TGAGAATAGCTCAACACGTGAGCCAAG
62 TGAGAATACCTCAACACGTGAGCCAAG
26232896 GCTCAACTCACCTCTCGCAATATGAGTTGACTCTTTTTTTTTAAAAAAAAGACATTAAAAACAGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTT-AAAAAAAGACATTAAAAACAGA
* *
26232961 AATTGAGAATAGCTCAGCACGTGAGCCAAG
59 AATTGAGAATACCTCAACACGTGAGCCAAG
* * *
26232991 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-GAAAACGTA-ATTGAAAAACAGGAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAG-ACATT-AAAAACAGAAATTG
* ** **
26233053 AAAATACCTTGACGTGTGAGCCAAG
64 AGAATACCTCAACACGTGAGCCAAG
* * * * *
26233078 GCTCAACTCACTTCTCGCCATATGAGTT-AATTTTTGAAAACAGACATTAAAAACAGAAATTGA-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAGACATTAAAAACAGAAATTGAG
* **
26233141 AATACCTCAGCGTGTGAGCCAAG
66 AATACCTCAACACGTGAGCCAAG
* * * * * * *
26233164 GTTCAACTCACCTTTCGCAATATGAGCTGATTTTTTTGAAAAATAGATATT-AAAATAGAATTTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-AAAAAAAGACATTAAAAACAGAAATTG
* * *** * *
26233228 AAAATACATTGGCA--TG-TCCTGAG
64 AGAATACCTCAACACGTGAGCC-AAG
* *
26233251 GCTCAACTCACCTCTCACAATATAAGTTGATTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
26233287 TTATGAACAG
Statistics
Matches: 330, Mismatches: 47, Indels: 34
0.80 0.11 0.08
Matches are distributed among these distances:
86 60 0.18
87 108 0.33
88 29 0.09
89 18 0.05
92 28 0.08
95 81 0.25
96 6 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAGACATTAAAAACAGAAATTGAG
AATACCTCAACACGTGAGCCAAG
Found at i:26233255 original size:173 final size:172
Alignment explanation
Indices: 26232940--26233285 Score: 414
Period size: 173 Copynumber: 2.0 Consensus size: 172
26232930 TTTTTTTTAA
*
26232940 AAAAAAGACATTAAAAACAGAAATTGAGAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTC
1 AAAAAAGACATTAAAAACAGAAATTGAGAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTC
* * * *
26233005 TCGCAATATGAGTTGATTTTTGAAAACGTAATTGAAAAACAGGAATTGAAAATACCTTGACGTGT
66 TCGCAATATGAGCTGATTTTTGAAAACATAATTGAAAAACAGGAATTGAAAATACATTGACATGT
* * * *
26233070 GAGCCAAGGCTCAACTCACTTCTCGCCATATGAGTTAATTTTTG
131 --GCCAAGGCTCAACTCACCTCTCACAATATAAGTTAATTTTTG
* ** * *
26233114 AAAACAGACATTAAAAACAGAAATTGA-AATACCTCAGCGTGTGAGCCAAGGTTCAACTCACCTT
1 AAAAAAGACATTAAAAACAGAAATTGAGAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTC
* * *
26233178 TCGCAATATGAGCTGATTTTTTTGAAAA-ATAGATAT-TAAAATA-GAATTTGAAAATACATTGG
66 TCGCAATATGAGCTGA--TTTTTGAAAACATA-AT-TGAAAAACAGGAA-TTGAAAATACATTGA
* *
26233240 CATGT-CCTGAGGCTCAACTCACCTCTCACAATATAAGTTGATTTTT
126 CATGTGCC-AAGGCTCAACTCACCTCTCACAATATAAGTTAATTTTT
26233286 TTTATGAACA
Statistics
Matches: 147, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
172 2 0.01
173 79 0.54
174 31 0.21
175 34 0.23
176 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (172 bp):
AAAAAAGACATTAAAAACAGAAATTGAGAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTC
TCGCAATATGAGCTGATTTTTGAAAACATAATTGAAAAACAGGAATTGAAAATACATTGACATGT
GCCAAGGCTCAACTCACCTCTCACAATATAAGTTAATTTTTG
Found at i:26233360 original size:75 final size:75
Alignment explanation
Indices: 26233242--26233448 Score: 242
Period size: 75 Copynumber: 2.8 Consensus size: 75
26233232 TACATTGGCA
* * * *
26233242 TGTCCTGAGGCTCAACTCACCTCTCACAATATAAGTTGATTTTTTT-TATGAACAGAAATT-AAA
1 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG-ACAGAAATTGAAA
* **
26233305 ATTACTTCTGCG
65 A-TACCTCAACG
* * *
26233317 TGTCCTGAGGCTCAACTTATCTCTCGCAATATGATTTGATTTTTTTGAAAGACAGAAATTGAAAA
1 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
26233382 TACCTCAACG
66 TACCTCAACG
** * *
26233392 CATCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAAT
1 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAAT
26233449 AAAAACATCA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
73 8 0.07
74 10 0.09
75 89 0.79
76 6 0.05
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (75 bp):
TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
TACCTCAACG
Found at i:26234542 original size:26 final size:26
Alignment explanation
Indices: 26234506--26234558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26234496 CTTTTGGCCG
*
26234506 TACTTTCTTGTCATGGGTCGTGATCA
1 TACTTTCTTGTCATGGGCCGTGATCA
26234532 TACTTTCTTGTCATGGGCCGTGATCA
1 TACTTTCTTGTCATGGGCCGTGATCA
26234558 T
1 T
26234559 TCTCTTCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (26 bp):
TACTTTCTTGTCATGGGCCGTGATCA
Found at i:26236542 original size:21 final size:21
Alignment explanation
Indices: 26236516--26236557 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26236506 AATATTAACG
26236516 GTCTTCCTGGAGTTGGAGGTA
1 GTCTTCCTGGAGTTGGAGGTA
26236537 GTCTTCCTGGAGTTGGAGGTA
1 GTCTTCCTGGAGTTGGAGGTA
26236558 CTAACATCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.33
Consensus pattern (21 bp):
GTCTTCCTGGAGTTGGAGGTA
Found at i:26241376 original size:4 final size:4
Alignment explanation
Indices: 26241338--26241366 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26241328 ATGTACATAC
26241338 AATG AATG AATG AATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG AATG A
26241367 CAAATGAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:26241387 original size:22 final size:22
Alignment explanation
Indices: 26241346--26241400 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
26241336 ACAATGAATG
* *
26241346 AATGAATGAATGAATGAATGACA
1 AATGAATG-TTGAATAAATGACA
*
26241369 AATGAATGTTGAATAAATGACG
1 AATGAATGTTGAATAAATGACA
26241391 AATGAATGTT
1 AATGAATGTT
26241401 ATTCATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:26245362 original size:21 final size:21
Alignment explanation
Indices: 26245332--26245397 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
26245322 ATAACATTGC
*
26245332 ATAAACATATACATATATATA
1 ATAAACATATACACATATATA
* * *
26245353 TTAAAGATATATACATATATA
1 ATAAACATATACACATATATA
26245374 ATAAACATATACTA-ATA-ATA
1 ATAAACATATAC-ACATATATA
26245394 ATAA
1 ATAA
26245398 TAATTATAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 7 0.19
21 29 0.78
22 1 0.03
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAAACATATACACATATATA
Found at i:26245392 original size:3 final size:3
Alignment explanation
Indices: 26245386--26245418 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
26245376 AAACATATAC
*
26245386 TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26245419 AAAGATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:26245627 original size:11 final size:10
Alignment explanation
Indices: 26245600--26245651 Score: 63
Period size: 9 Copynumber: 5.1 Consensus size: 10
26245590 TAGGGATAAA
26245600 AATAGATATAAT
1 AATA-ATAT-AT
26245612 AATAATATAT
1 AATAATATAT
26245622 ACATAATATAT
1 A-ATAATATAT
26245633 AA-AATATAT
1 AATAATATAT
26245642 -ATAATATAT
1 AATAATATAT
26245651 A
1 A
26245652 CATATGTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
8 1 0.03
9 14 0.38
10 4 0.11
11 14 0.38
12 4 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
AATAATATAT
Found at i:26245649 original size:18 final size:18
Alignment explanation
Indices: 26245493--26245651 Score: 80
Period size: 18 Copynumber: 8.6 Consensus size: 18
26245483 AAATAATAGG
26245493 TATAATA-AT-AAATATA
1 TATAATATATAAAATATA
* *
26245509 -ATGATATATGAAA-ATA
1 TATAATATATAAAATATA
* * *
26245525 -ATACTATGTAAAGTATA
1 TATAATATATAAAATATA
26245542 TATACCCATATAATAAAATATA
1 TATA---ATAT-ATAAAATATA
*
26245564 TGTACTAATAT-TAATAATAAA
1 --TA-TAATATATAA-AATATA
* *
26245585 TATAATAGGGATAAAAATAGA
1 TATAATA--TAT-AAAATATA
*
26245606 TATAATA-ATAATATATA
1 TATAATATATAAAATATA
*
26245623 CATAATATATAAAATATA
1 TATAATATATAAAATATA
26245641 TATAATATATA
1 TATAATATATA
26245652 CATATGTTAG
Statistics
Matches: 109, Mismatches: 17, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
15 5 0.05
16 13 0.12
17 18 0.17
18 29 0.27
19 2 0.02
20 3 0.03
21 21 0.19
22 14 0.13
24 2 0.02
25 2 0.02
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (18 bp):
TATAATATATAAAATATA
Found at i:26245791 original size:23 final size:25
Alignment explanation
Indices: 26245765--26245831 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 25
26245755 AGCATTAGAA
*
26245765 ATATACATAC-AATAGTA-TAAAAG
1 ATATACATACTAATAATATTAAAAG
* *
26245788 ATATATA-ACTAATAATATTAAAAT
1 ATATACATACTAATAATATTAAAAG
*
26245812 ATATACATAATAATATATAT
1 ATATACATACTAATA-ATAT
26245832 AAATATAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 2 0.06
23 12 0.34
24 11 0.31
25 6 0.17
26 4 0.11
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (25 bp):
ATATACATACTAATAATATTAAAAG
Found at i:26245815 original size:22 final size:24
Alignment explanation
Indices: 26245765--26245969 Score: 81
Period size: 24 Copynumber: 8.5 Consensus size: 24
26245755 AGCATTAGAA
* *
26245765 ATATACAT-ACAATAGTATAAAAGAT
1 ATATACATAATAATA-TATATAA-AT
26245790 ATATA-ACTAATAATAT-TA-AAAT
1 ATATACA-TAATAATATATATAAAT
26245812 ATATACATAATAATATATATAAAT
1 ATATACATAATAATATATATAAAT
* *
26245836 ATAATA-TTAA-AATATATATACAT
1 AT-ATACATAATAATATATATAAAT
* * * *
26245859 AACATATATGAAAAATATATATATA-
1 -ATATACAT-AATAATATATATAAAT
* * *
26245884 ATATA-GTATTAA-ATATTTACAAT
1 ATATACATAATAATATATATA-AAT
* * * *
26245907 ATATACATATTAGAAATA-AAAAAA
1 ATATACATAATA-ATATATATAAAT
* *
26245931 ACGACTA-ATAATAATACTACATAAAT
1 A-TA-TACATAATAATA-TATATAAAT
26245957 ATATACATAATAA
1 ATATACATAATAA
26245970 AACATATACT
Statistics
Matches: 138, Mismatches: 22, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
21 6 0.04
22 20 0.14
23 26 0.19
24 30 0.22
25 30 0.22
26 26 0.19
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (24 bp):
ATATACATAATAATATATATAAAT
Found at i:26245842 original size:13 final size:13
Alignment explanation
Indices: 26245788--26245899 Score: 55
Period size: 13 Copynumber: 8.9 Consensus size: 13
26245778 AGTATAAAAG
*
26245788 ATATATAACTAATA
1 ATATATAAAT-ATA
26245802 ATAT-TAAA-AT-
1 ATATATAAATATA
*
26245812 ATATACATAATA-A
1 ATATATA-AATATA
26245825 TATATATAAATATA
1 -ATATATAAATATA
26245839 ATAT-TAAA-AT-
1 ATATATAAATATA
*
26245849 ATATATACATA-A
1 ATATATAAATATA
*
26245861 CATATATGAAAAAT-
1 -ATATAT-AAATATA
26245875 ATATATATAATATA
1 ATATATA-AATATA
*
26245889 GTAT-TAAATAT
1 ATATATAAATAT
26245900 TTACAATATA
Statistics
Matches: 76, Mismatches: 8, Indels: 30
0.67 0.07 0.26
Matches are distributed among these distances:
10 8 0.11
11 8 0.11
12 13 0.17
13 30 0.39
14 17 0.22
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (13 bp):
ATATATAAATATA
Found at i:26245942 original size:3 final size:3
Alignment explanation
Indices: 26245936--26246013 Score: 50
Period size: 3 Copynumber: 24.7 Consensus size: 3
26245926 AAAAAACGAC
* * *
26245936 TAA TAA TAA TAC TACA TAAA TATA TACA TAA TAA -AA CATA TAC TAA
1 TAA TAA TAA TAA TA-A T-AA TA-A TA-A TAA TAA TAA TA-A TAA TAA
* * *
26245982 TAA CAA TAA TAT TAA TAA TAA TAA TAA CAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26246014 TAAATAATGG
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 2 0.03
3 44 0.76
4 11 0.19
5 1 0.02
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:26251017 original size:38 final size:38
Alignment explanation
Indices: 26250975--26251078 Score: 154
Period size: 38 Copynumber: 2.7 Consensus size: 38
26250965 GGCTTAAAGA
* *
26250975 CCCGCAGGCTTCGCGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
26251013 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * *
26251051 CTCGCAGGCCTAGTGCTGGTATTATATC
1 CCCGCAGGCTTCGTGCTGGTATTATATC
26251079 TGAGCTTAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:26251642 original size:25 final size:25
Alignment explanation
Indices: 26251587--26251642 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
26251577 TGTTTGTATT
* *
26251587 GCTTAAAACTTGCTAAGCTTTGAAA
1 GCTTACAACTTACTAAGCTTTGAAA
26251612 GCTTACAACTTACTAAGCTTTGAAA
1 GCTTACAACTTACTAAGCTTTGAAA
26251637 GCTTAC
1 GCTTAC
26251643 TCTGTTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (25 bp):
GCTTACAACTTACTAAGCTTTGAAA
Found at i:26256960 original size:38 final size:38
Alignment explanation
Indices: 26256918--26257021 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
26256908 GGCTTAAAGA
* *
26256918 CCCGCAGGCTTCGCGTTGGTAATATATCCGGGTTGAAT
1 CCCGCAGGCTTCGCGCTGGTAATATATCCGGGTTAAAT
* *
26256956 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGCGCTGGTAATATATCCGGGTTAAAT
* * * * *
26256994 CTCGCAGGCCTAGTGCTGGTATTATATC
1 CCCGCAGGCTTCGCGCTGGTAATATATC
26257022 TAAGCTTAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTTCGCGCTGGTAATATATCCGGGTTAAAT
Found at i:26265182 original size:15 final size:15
Alignment explanation
Indices: 26265162--26265192 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26265152 AAGTTCGTTT
26265162 ACCTTATTCTTATTA
1 ACCTTATTCTTATTA
26265177 ACCTTATTCTTATTA
1 ACCTTATTCTTATTA
26265192 A
1 A
26265193 GCTTCAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52
Consensus pattern (15 bp):
ACCTTATTCTTATTA
Found at i:26265307 original size:8 final size:8
Alignment explanation
Indices: 26265294--26265342 Score: 62
Period size: 8 Copynumber: 5.8 Consensus size: 8
26265284 TTAAAATAAT
26265294 TAGAAATA
1 TAGAAATA
26265302 TAGAAATA
1 TAGAAATA
26265310 TAGAAATA
1 TAGAAATA
26265318 TAGAAAATAA
1 TAG-AAAT-A
*
26265328 TAAAAAATA
1 T-AGAAATA
26265337 TAGAAA
1 TAGAAA
26265343 AATGAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
8 23 0.64
9 6 0.17
10 6 0.17
11 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.22
Consensus pattern (8 bp):
TAGAAATA
Found at i:26265315 original size:16 final size:17
Alignment explanation
Indices: 26265287--26265342 Score: 69
Period size: 16 Copynumber: 3.2 Consensus size: 17
26265277 TCTATATTTA
26265287 AAATAATTAGAAATATAG
1 AAATAA-TAGAAATATAG
26265305 AAAT-ATAGAAATATAG
1 AAATAATAGAAATATAG
*
26265321 AAAATAATAAAAAATATAG
1 -AAATAAT-AGAAATATAG
26265340 AAA
1 AAA
26265343 AATGAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
16 11 0.32
17 5 0.15
18 9 0.26
19 9 0.26
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.23
Consensus pattern (17 bp):
AAATAATAGAAATATAG
Found at i:26265335 original size:27 final size:28
Alignment explanation
Indices: 26265298--26265371 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 28
26265288 AATAATTAGA
*
26265298 AATATAGAAATATAGAAATAT-AGAAAAT
1 AATATAAAAATATAGAAATATGA-AAAAT
*
26265326 AATA-AAAAATATAGAAAAATGAAAAAT
1 AATATAAAAATATAGAAATATGAAAAAT
**
26265353 TCTATAAAAATATAGAAAT
1 AATATAAAAATATAGAAAT
26265372 GTTATAAAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.66, C:0.01, G:0.08, T:0.24
Consensus pattern (28 bp):
AATATAAAAATATAGAAATATGAAAAAT
Found at i:26265351 original size:19 final size:19
Alignment explanation
Indices: 26265286--26265343 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
26265276 TTCTATATTT
* *
26265286 AAAATAATTAGAAATATAG
1 AAAATAATAAAAAATATAG
*
26265305 -AAAT-AT-AGAAATATAG
1 AAAATAATAAAAAATATAG
26265321 AAAATAATAAAAAATATAG
1 AAAATAATAAAAAATATAG
26265340 AAAA
1 AAAA
26265344 ATGAAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
16 10 0.29
17 6 0.17
18 6 0.17
19 13 0.37
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (19 bp):
AAAATAATAAAAAATATAG
Found at i:26265635 original size:10 final size:10
Alignment explanation
Indices: 26265622--26265680 Score: 52
Period size: 11 Copynumber: 6.0 Consensus size: 10
26265612 ATTACAAATT
*
26265622 ATTATTCAAA
1 ATTATTAAAA
26265632 ATTACTTAAAA
1 ATTA-TTAAAA
* *
26265643 ATAATAAAAA
1 ATTATTAAAA
26265653 ATTA-T-AAA
1 ATTATTAAAA
26265661 ATTA-TAAAA
1 ATTATTAAAA
26265670 ATTATCTAAAA
1 ATTAT-TAAAA
26265681 TTTTATATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
8 8 0.20
9 7 0.17
10 12 0.30
11 13 0.32
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (10 bp):
ATTATTAAAA
Found at i:26265667 original size:18 final size:17
Alignment explanation
Indices: 26265640--26265674 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26265630 AAATTACTTA
26265640 AAAATAATAAAAAATTAT
1 AAAATAAT-AAAAATTAT
*
26265658 AAAATTATAAAAATTAT
1 AAAATAATAAAAATTAT
26265675 CTAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAATAATAAAAATTAT
Found at i:26266004 original size:22 final size:22
Alignment explanation
Indices: 26265961--26266007 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
26265951 ATTTTTAAAA
*
26265961 TTTTTTCATAATTTTTACAATT
1 TTTTTTCATAATTTATACAATT
*
26265983 TTTTCTTCATAA-TTATATAATT
1 TTTT-TTCATAATTTATACAATT
26266005 TTT
1 TTT
26266008 ATTTTTTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTTCATAATTTATACAATT
Found at i:26266048 original size:25 final size:26
Alignment explanation
Indices: 26266020--26266068 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26266010 TTTTTTACTT
26266020 TTTA-AATGATTTTTATAAATTTTCA
1 TTTATAATGATTTTTATAAATTTTCA
* *
26266045 TTTATAATGATTTTTGTAATTTTT
1 TTTATAATGATTTTTATAAATTTT
26266069 TATCTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (26 bp):
TTTATAATGATTTTTATAAATTTTCA
Found at i:26266068 original size:9 final size:9
Alignment explanation
Indices: 26266054--26266095 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26266044 ATTTATAATG
26266054 ATTTTTGTA
1 ATTTTTGTA
26266063 ATTTTT-TA
1 ATTTTTGTA
* *
26266071 TCTTTTTATA
1 -ATTTTTGTA
26266081 ATTTTTGTA
1 ATTTTTGTA
26266090 ATTTTT
1 ATTTTT
26266096 AATTTTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 2 0.07
9 24 0.86
10 2 0.07
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.71
Consensus pattern (9 bp):
ATTTTTGTA
Found at i:26266454 original size:20 final size:20
Alignment explanation
Indices: 26266424--26266482 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 20
26266414 ATATTTAAAT
26266424 TATTTTT-AATAA-TTTTCTA
1 TATTTTTAAATAATTTTTC-A
*
26266443 TATTTTTAAATAGTTTTTCA
1 TATTTTTAAATAATTTTTCA
*
26266463 T-TTTTTAAAT-TTTTTTCA
1 TATTTTTAAATAATTTTTCA
26266481 TA
1 TA
26266483 ATTTATCTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.23
19 16 0.46
20 6 0.17
21 5 0.14
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTTTTAAATAATTTTTCA
Found at i:26266706 original size:20 final size:20
Alignment explanation
Indices: 26266658--26266733 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 20
26266648 ACAATATTGT
* *
26266658 AATTTTTAATAATTTTGTAT-
1 AATTTTT-ATGATTTTCTATA
26266678 AATTTTTATGATTTTCTATA
1 AATTTTTATGATTTTCTATA
**
26266698 AATTTTTATTTTTTTTCTTTATA
1 AATTTTTA-TGATTTTC--TATA
26266721 AA-TTTTATGATTT
1 AATTTTTATGATTT
26266734 GTAAGGTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 10 0.22
20 15 0.33
21 10 0.22
22 5 0.11
23 6 0.13
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (20 bp):
AATTTTTATGATTTTCTATA
Found at i:26269077 original size:20 final size:20
Alignment explanation
Indices: 26269052--26269090 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26269042 ATTCAAAGTT
*
26269052 CAAAAATGTT-AAATAAAATG
1 CAAAAA-GTTCAAAAAAAATG
26269072 CAAAAAGTTCAAAAAAAAT
1 CAAAAAGTTCAAAAAAAAT
26269091 AAAATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.21
Consensus pattern (20 bp):
CAAAAAGTTCAAAAAAAATG
Found at i:26269836 original size:20 final size:20
Alignment explanation
Indices: 26269797--26269836 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
26269787 GCTGACCAGT
26269797 CATGTGAACACCATTAATGAC
1 CATGTGAACA-CATTAATGAC
26269818 CATGTGAACA-ATATAATGA
1 CATGTGAACACAT-TAATGA
26269837 TCAAGACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (20 bp):
CATGTGAACACATTAATGAC
Found at i:26269941 original size:19 final size:18
Alignment explanation
Indices: 26269917--26269965 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
26269907 TTCTCTTCAT
26269917 TTTATTTAAAAATATTTTA
1 TTTA-TTAAAAATATTTTA
*
26269936 TTTATTAAAATTATTTT-
1 TTTATTAAAAATATTTTA
*
26269953 TATTATTATAAAT
1 T-TTATTAAAAAT
26269966 TTTAACTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 1 0.04
18 21 0.81
19 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTATTAAAAATATTTTA
Found at i:26280841 original size:3 final size:3
Alignment explanation
Indices: 26280833--26280874 Score: 50
Period size: 3 Copynumber: 13.3 Consensus size: 3
26280823 TTTATGCTCC
26280833 TAT TAT TAT TAT TAT TACCT TAT TAT CTAT TAT T-T TAT TAT T
1 TAT TAT TAT TAT TAT TA--T TAT TAT -TAT TAT TAT TAT TAT T
26280875 GTCTATTCGT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 2 0.06
3 27 0.77
4 3 0.09
5 3 0.09
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:26280873 original size:18 final size:18
Alignment explanation
Indices: 26280833--26280881 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
26280823 TTTATGCTCC
26280833 TATTATTAT-TATTATTA
1 TATTATTATCTATTATTA
** *
26280850 CCTTATTATCTATTATTT
1 TATTATTATCTATTATTA
*
26280868 TATTATTGTCTATT
1 TATTATTATCTATT
26280882 CGTTTATTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTATTATCTATTATTA
Found at i:26280969 original size:3 final size:3
Alignment explanation
Indices: 26280947--26281012 Score: 114
Period size: 3 Copynumber: 22.0 Consensus size: 3
26280937 TTTTTAAACC
* *
26280947 TAT TAT CAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26280995 TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT
26281013 ATTTTCTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:26282964 original size:25 final size:25
Alignment explanation
Indices: 26282923--26283002 Score: 99
Period size: 25 Copynumber: 3.2 Consensus size: 25
26282913 TAATAATCAC
*
26282923 AAAAAATGAAACA-AAATAATATATA
1 AAAAAATTAAA-ATAAATAATATATA
* *
26282948 AAAAAATTAAAGTAAATAATATACA
1 AAAAAATTAAAATAAATAATATATA
**
26282973 AAAAGTTTAAAATAAATAATATATA
1 AAAAAATTAAAATAAATAATATATA
26282998 AAAAA
1 AAAAA
26283003 TAAAAAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAAAATTAAAATAAATAATATATA
Found at i:26283002 original size:18 final size:18
Alignment explanation
Indices: 26282981--26283039 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
26282971 CAAAAAGTTT
26282981 AAAATAAATAATATATAA
1 AAAATAAATAATATATAA
*
26282999 AAAATAAAAAATATATAA
1 AAAATAAATAATATATAA
*
26283017 GACAATTTCAAATAATATATAA
1 -A-AA-AT-AAATAATATATAA
26283039 A
1 A
26283040 GTTTAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 17 0.50
19 1 0.03
20 2 0.06
21 2 0.06
22 12 0.35
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAATAAATAATATATAA
Found at i:26283009 original size:25 final size:25
Alignment explanation
Indices: 26282923--26283016 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
26282913 TAATAATCAC
* *
26282923 AAAAAATGAAACA-AAATAATATAT
1 AAAAAATAAAAAATAAATAATATAT
* * *
26282947 AAAAAA-ATTAAAGTAAATAATATAC
1 AAAAAATA-AAAAATAAATAATATAT
* **
26282972 AAAAAGTTTAAAATAAATAATATAT
1 AAAAAATAAAAAATAAATAATATAT
*
26282997 AAAAAATAAAAAATATATAA
1 AAAAAATAAAAAATAAATAA
26283017 GACAATTTCA
Statistics
Matches: 54, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
24 8 0.15
25 46 0.85
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.24
Consensus pattern (25 bp):
AAAAAATAAAAAATAAATAATATAT
Found at i:26283113 original size:78 final size:75
Alignment explanation
Indices: 26283031--26283284 Score: 191
Period size: 78 Copynumber: 3.3 Consensus size: 75
26283021 ATTTCAAATA
26283031 ATATATAAAGTTTAAAATAAATTATGTAAAAATAAATTTAAAATAAATAATATACAAAACAATTT
1 ATATATAAAGTTTAAAATAAA-TATGTAAAAATAAATTTAAAATAAATAATATA-AAAACAATTT
26283096 AAAGATAAATAAT
64 AAA-ATAAATAAT
* * * *
26283109 ATATATAAA-TTTAAAAATAAATA-ATACATATAACAGTTTAAAATAAATAATAT-ATAA-AATT
1 ATATATAAAGTTT-AAAATAAATATGTAAAAATAA-A-TTTAAAATAAATAATATAAAAACAATT
**
26283170 TAAAATGGATAAT
63 TAAAATAAATAAT
* * * *
26283183 AGTTTGA-AATAGTTTAAAATACATAATATGT-GAAA-AAACTTAAAGTAAATAATA-ATAAAAC
1 A-TAT-ATAA-AGTTTAAAAT--A-AATATGTAAAAATAAATTTAAAATAAATAATATA-AAAAC
*
26283244 AATTTAAAATAAAAAATGT
59 AATTTAAAATAAATAA--T
*
26283263 ATGATAAAAAGGTTTAAAATAA
1 AT-ATATAAA-GTTTAAAATAA
26283285 TAAATAAATA
Statistics
Matches: 140, Mismatches: 17, Indels: 39
0.71 0.09 0.20
Matches are distributed among these distances:
74 8 0.06
75 12 0.09
76 31 0.22
77 14 0.10
78 51 0.36
79 9 0.06
80 15 0.11
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (75 bp):
ATATATAAAGTTTAAAATAAATATGTAAAAATAAATTTAAAATAAATAATATAAAAACAATTTAA
AATAAATAAT
Found at i:26283118 original size:51 final size:50
Alignment explanation
Indices: 26283062--26283270 Score: 170
Period size: 51 Copynumber: 4.1 Consensus size: 50
26283052 TTATGTAAAA
*
26283062 ATAAATTTAAAATAAATAATATACAAAACAATTTAAAGATAAATAATATAT
1 ATAAATTTAAAATAAATAATACACAAAACAATTTAAA-ATAAATAATATAT
* * *
26283113 ATAAATTTAAAAATAAATAATACATATAACAGTTTAAAATAAATAATATAT
1 ATAAATTT-AAAATAAATAATACACAAAACAATTTAAAATAAATAATATAT
** **** * * * *
26283164 A-AAATTTAAAATGGATAATAGTTTGAAATAGTTTAAAATACATAATATGT
1 ATAAATTTAAAATAAATAATA-CACAAAACAATTTAAAATAAATAATATAT
* * * * * *
26283214 GAAAAAACTTAAAGTAAATAATA-ATAAAACAATTTAAAATAAAAAATGTAT
1 --ATAAATTTAAAATAAATAATACACAAAACAATTTAAAATAAATAATATAT
26283265 GATAAA
1 -ATAAA
26283271 AAGGTTTAAA
Statistics
Matches: 126, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
49 11 0.09
50 32 0.25
51 42 0.33
52 26 0.21
53 15 0.12
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (50 bp):
ATAAATTTAAAATAAATAATACACAAAACAATTTAAAATAAATAATATAT
Found at i:26283208 original size:27 final size:24
Alignment explanation
Indices: 26282936--26283284 Score: 159
Period size: 26 Copynumber: 14.1 Consensus size: 24
26282926 AAATGAAACA
** *
26282936 AAATAATATATAAAAAAATTAAAGT
1 AAATAATATAT-AAAAGTTTAAAAT
*
26282961 AAATAATATACAAAAAGTTTAAAAT
1 AAATAATATA-TAAAAGTTTAAAAT
26282986 AAATAATATAT--AA----AAAAT
1 AAATAATATATAAAAGTTTAAAAT
* * *
26283004 AAAAAATATATAAGACAATTT----C
1 AAATAATATATAA-A-AGTTTAAAAT
26283026 AAATAATATAT-AAAGTTTAAAAT
1 AAATAATATATAAAAGTTTAAAAT
* * * *
26283049 AAATTATGTAAAAATAAATTTAAAAT
1 AAATAATAT-ATAA-AAGTTTAAAAT
* *
26283075 AAATAATATACAAAACAATTTAAAGAT
1 AAATAATATA-TAAA-AGTTTAAA-AT
26283102 AAATAATATATATAAA-TTTAAAAAT
1 AAATAATATATA-AAAGTTT-AAAAT
*
26283127 AAATAATACATATAACAGTTTAAAAT
1 AAATAAT--ATATAAAAGTTTAAAAT
26283153 AAATAATATATAAAA-TTTAAAAT
1 AAATAATATATAAAAGTTTAAAAT
** *
26283176 GGATAATAGTTTGAAATAGTTTAAAAT
1 AAATAATA-TAT-AAA-AGTTTAAAAT
* * ** *
26283203 ACATAATATGTGAAAAAACTTAAAGT
1 AAATAATATAT--AAAAGTTTAAAAT
*
26283229 AAATAATA-ATAAAACAATTTAAAAT
1 AAATAATATAT-AAA-AGTTTAAAAT
*
26283254 AAAAAATGTATGATAAAAAGGTTTAAAAT
1 AAATAA--TAT-AT-AAAA-GTTTAAAAT
26283283 AA
1 AA
26283285 TAAATAAATA
Statistics
Matches: 254, Mismatches: 35, Indels: 66
0.72 0.10 0.19
Matches are distributed among these distances:
18 15 0.06
19 4 0.02
20 1 0.00
21 2 0.01
22 13 0.05
23 21 0.08
24 14 0.06
25 62 0.24
26 64 0.25
27 41 0.16
28 1 0.00
29 16 0.06
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.30
Consensus pattern (24 bp):
AAATAATATATAAAAGTTTAAAAT
Found at i:26285864 original size:93 final size:93
Alignment explanation
Indices: 26285746--26285921 Score: 282
Period size: 93 Copynumber: 1.9 Consensus size: 93
26285736 TTGCTATGCA
26285746 ATTGCTGGACCTTCACGTCTCTGCAACTGCTCCCTGCTGCTATTATTTTTTGTTTTTTCGACAAC
1 ATTGCTGGACCTTCACGTCTCTGCAACTGCTCCCTGCTGCTATTATTTTTTGTTTTTTCGACAAC
*
26285811 TGGTGGTTGCTGCAATTGGTTCTACTCT
66 TGGTGGCTGCTGCAATTGGTTCTACTCT
* * *
26285839 ATTGCTGG-CTCTTCACGTCTTTGCAACTGCTCCCTGCTGCTATTATTTTTTGTTTTTTGGGCAA
1 ATTGCTGGAC-CTTCACGTCTCTGCAACTGCTCCCTGCTGCTATTATTTTTTGTTTTTTCGACAA
* *
26285903 TTGGTGGCTGTTGCAATTG
65 CTGGTGGCTGCTGCAATTG
26285922 TTGGTTGCAC
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (93 bp):
ATTGCTGGACCTTCACGTCTCTGCAACTGCTCCCTGCTGCTATTATTTTTTGTTTTTTCGACAAC
TGGTGGCTGCTGCAATTGGTTCTACTCT
Found at i:26287116 original size:28 final size:28
Alignment explanation
Indices: 26287034--26287179 Score: 240
Period size: 28 Copynumber: 5.1 Consensus size: 28
26287024 TGAGCATGAC
26287034 TATAAATGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
26287063 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
26287092 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
*
26287120 TATAAATGTGACTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
26287148 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
26287176 TATA
1 TATA
26287180 CAGGTATGTG
Statistics
Matches: 111, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
28 75 0.68
29 36 0.32
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:26290808 original size:16 final size:16
Alignment explanation
Indices: 26290787--26290822 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26290777 AAAAGCAAAG
*
26290787 GAGAAAAATATTTTTA
1 GAGAAAAATATTTTCA
*
26290803 GAGAAAAATGTTTTCA
1 GAGAAAAATATTTTCA
26290819 GAGA
1 GAGA
26290823 GGGTTGTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (16 bp):
GAGAAAAATATTTTCA
Found at i:26295657 original size:3 final size:3
Alignment explanation
Indices: 26295649--26295682 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
26295639 TAGAAAGAGC
26295649 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26295683 CATAAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26298346 original size:9 final size:9
Alignment explanation
Indices: 26298334--26298409 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
26298324 AAATTACAAA
26298334 AAAAAATTT
1 AAAAAATTT
26298343 AAAATAATTT
1 AAAA-AATTT
** **
26298353 TTAAAATCA
1 AAAAAATTT
26298362 AAAAAATTCT
1 AAAAAATT-T
26298372 AAAAAATATAT
1 AAAAAAT-T-T
*
26298383 AAAGAAAGTT
1 AAA-AAATTT
*
26298393 AAAAAATTA
1 AAAAAATTT
26298402 AAAAAATT
1 AAAAAATT
26298410 ATTAAATAAT
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
9 24 0.47
10 18 0.35
11 6 0.12
12 3 0.06
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (9 bp):
AAAAAATTT
Found at i:26299323 original size:16 final size:15
Alignment explanation
Indices: 26299298--26299329 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
26299288 GAATATTTTC
26299298 TTTTTTTATATATAT
1 TTTTTTTATATATAT
26299313 TTTTATTTATATATAT
1 TTTT-TTTATATATAT
26299329 T
1 T
26299330 ACTTTTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTTTTATATATAT
Found at i:26299518 original size:25 final size:27
Alignment explanation
Indices: 26299465--26299519 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
26299455 AATTAATAAA
* * *
26299465 TTTTATTTAAGTTTAATTATAAAATAT
1 TTTTAATTAAGTTTAATAATAAAACAT
26299492 TTTTAATTAA-TTTAA-AATAAAACAT
1 TTTTAATTAAGTTTAATAATAAAACAT
26299517 TTT
1 TTT
26299520 GCAACGGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.44
26 5 0.20
27 9 0.36
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (27 bp):
TTTTAATTAAGTTTAATAATAAAACAT
Found at i:26303268 original size:21 final size:21
Alignment explanation
Indices: 26303242--26303282 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26303232 ATCTGCTCAA
* *
26303242 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
26303263 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
26303283 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:26306140 original size:24 final size:24
Alignment explanation
Indices: 26306093--26306140 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26306083 TCCCACCATT
*
26306093 TTTGACTTTTCAACACTTACCTTA
1 TTTGACTTTTCAACACATACCTTA
* *
26306117 TTTGATTTTTCAACACATATCTTA
1 TTTGACTTTTCAACACATACCTTA
26306141 CGTGCAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.21, G:0.04, T:0.48
Consensus pattern (24 bp):
TTTGACTTTTCAACACATACCTTA
Found at i:26306374 original size:12 final size:12
Alignment explanation
Indices: 26306357--26306381 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26306347 AATTGATATC
26306357 TTCTTTTTTTTT
1 TTCTTTTTTTTT
26306369 TTCTTTTTTTTT
1 TTCTTTTTTTTT
26306381 T
1 T
26306382 ATGTTAGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:26307677 original size:2 final size:2
Alignment explanation
Indices: 26307672--26307697 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26307662 TGCGTGTGTG
26307672 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
26307698 AAAGTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26309815 original size:7 final size:7
Alignment explanation
Indices: 26309803--26309835 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
26309793 GGGGTGTAGT
26309803 AGCATGA
1 AGCATGA
26309810 AGCATGA
1 AGCATGA
26309817 AGCATGA
1 AGCATGA
*
26309824 AGCATGG
1 AGCATGA
26309831 AGCAT
1 AGCAT
26309836 ACTACTTCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.39, C:0.15, G:0.30, T:0.15
Consensus pattern (7 bp):
AGCATGA
Found at i:26310846 original size:3 final size:3
Alignment explanation
Indices: 26310838--26310881 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
26310828 TCAATCAAAT
26310838 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26310882 GTAGTATTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26313469 original size:53 final size:54
Alignment explanation
Indices: 26313372--26313483 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 54
26313362 GGAATGGAAG
26313372 TGAAAAACAACAAAGATAAAAAAAAAAACAAAATTAAAAACCCTTCAACATCATCAT
1 TGAAAAACAACAAAGAT---AAAAAAAACAAAATTAAAAACCCTTCAACATCATCAT
*
26313429 TGAAAAACAACAAAGAT-AAAAAAACAAAATTAAAAACCCTTCAACATTATCAT
1 TGAAAAACAACAAAGATAAAAAAAACAAAATTAAAAACCCTTCAACATCATCAT
26313482 TG
1 TG
26313484 CCCTTTGAAG
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
53 37 0.69
57 17 0.31
ACGTcount: A:0.61, C:0.17, G:0.04, T:0.18
Consensus pattern (54 bp):
TGAAAAACAACAAAGATAAAAAAAACAAAATTAAAAACCCTTCAACATCATCAT
Found at i:26313728 original size:21 final size:20
Alignment explanation
Indices: 26313695--26313734 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26313685 AACTAAACTA
* *
26313695 AGAATAAGGAACAATTAAAG
1 AGAAGAAGGAACAACTAAAG
26313715 AGAAGAAGAGAACAACTAAA
1 AGAAGAAG-GAACAACTAAA
26313735 ATAGTCGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.07, G:0.20, T:0.10
Consensus pattern (20 bp):
AGAAGAAGGAACAACTAAAG
Found at i:26319566 original size:14 final size:14
Alignment explanation
Indices: 26319547--26319573 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26319537 TCTGATAAAC
26319547 CTGTATCTGATTTT
1 CTGTATCTGATTTT
26319561 CTGTATCTGATTT
1 CTGTATCTGATTT
26319574 GGGGTGGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (14 bp):
CTGTATCTGATTTT
Found at i:26322232 original size:32 final size:32
Alignment explanation
Indices: 26322191--26322255 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
26322181 TTATATTGTG
* *
26322191 AAAATTAATGGAAGATGATGTCAATTTCCATT
1 AAAATTAATGGAAGATGATGCCAATCTCCATT
26322223 AAAATTAATGGAAGATGATGCCAATCTCCATT
1 AAAATTAATGGAAGATGATGCCAATCTCCATT
26322255 A
1 A
26322256 GTTTTAGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (32 bp):
AAAATTAATGGAAGATGATGCCAATCTCCATT
Found at i:26323482 original size:21 final size:22
Alignment explanation
Indices: 26323458--26323516 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 22
26323448 ATGTGAAATT
*
26323458 ATGCTTAATTATATTATT-TTC
1 ATGCTTAATTATATTATTCATC
* *
26323479 ATGCATATTTTATATTAATTCATC
1 ATGCTTA-ATTATATT-ATTCATC
26323503 ATG-TTAATT-TATTA
1 ATGCTTAATTATATTA
26323517 ATGTATGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
20 1 0.03
21 10 0.33
22 9 0.30
23 5 0.17
24 5 0.17
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.54
Consensus pattern (22 bp):
ATGCTTAATTATATTATTCATC
Found at i:26324137 original size:22 final size:22
Alignment explanation
Indices: 26324112--26324155 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
26324102 CCCTTTTCCA
26324112 ATCTCTAGCCTCAAAAGCTTTG
1 ATCTCTAGCCTCAAAAGCTTTG
*
26324134 ATCTCTAGCCTTAAAAGCTTTG
1 ATCTCTAGCCTCAAAAGCTTTG
26324156 TCAAAAGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (22 bp):
ATCTCTAGCCTCAAAAGCTTTG
Found at i:26326380 original size:27 final size:26
Alignment explanation
Indices: 26326288--26326405 Score: 68
Period size: 27 Copynumber: 4.4 Consensus size: 26
26326278 GAATGGTTCA
*
26326288 AAATAAATGACATATGA-AAA-AGATTT
1 AAATAAAT-A-ATATGATAAATAAATTT
* *
26326314 AACATGAATAAAAT-ATAAA-ACAATTT
1 AA-ATAAATAATATGATAAATA-AATTT
*
26326340 GAAATAAAACAATAT-ATAAACTAAATTT
1 -AAAT-AAATAATATGATAAA-TAAATTT
*
26326368 CAAATAAATAATATGTTAAATAAA-TT
1 -AAATAAATAATATGATAAATAAATTT
26326394 AAGATAAATAAT
1 AA-ATAAATAAT
26326406 TCACAAAGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
24 1 0.01
25 9 0.12
26 20 0.27
27 30 0.41
28 13 0.18
29 1 0.01
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29
Consensus pattern (26 bp):
AAATAAATAATATGATAAATAAATTT
Found at i:26326955 original size:15 final size:15
Alignment explanation
Indices: 26326931--26326960 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26326921 TATGTTGAAA
26326931 AATAGAAATAATAAT
1 AATAGAAATAATAAT
*
26326946 AATAGTAATAATAAT
1 AATAGAAATAATAAT
26326961 GTAAATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AATAGAAATAATAAT
Found at i:26327341 original size:19 final size:20
Alignment explanation
Indices: 26327319--26327367 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
26327309 TAAGAAATGA
26327319 AAATCAATATAAAAT-AAA-T
1 AAATCAA-ATAAAATGAAATT
*
26327338 AAAT-AAATAAACTGAAATT
1 AAATCAAATAAAATGAAATT
26327357 AAATCAAATAA
1 AAATCAAATAA
26327368 GGACTAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.23
18 5 0.19
19 9 0.35
20 6 0.23
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (20 bp):
AAATCAAATAAAATGAAATT
Found at i:26328289 original size:40 final size:40
Alignment explanation
Indices: 26328234--26328313 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
26328224 ATTTTCCTTC
26328234 TTGCAGGTGTTTTTAGAGGGTCAACAAAGAAAGGAGGCCA
1 TTGCAGGTGTTTTTAGAGGGTCAACAAAGAAAGGAGGCCA
26328274 TTGCAGGTGTTTTTAGAGGGTCAACAAAGAAAGGAGGCCA
1 TTGCAGGTGTTTTTAGAGGGTCAACAAAGAAAGGAGGCCA
26328314 ACCCTTTACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.23
Consensus pattern (40 bp):
TTGCAGGTGTTTTTAGAGGGTCAACAAAGAAAGGAGGCCA
Found at i:26332674 original size:8 final size:8
Alignment explanation
Indices: 26332658--26332697 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
26332648 ATGGGCCGAA
26332658 AACGGGCC
1 AACGGGCC
*
26332666 AATGGGCC
1 AACGGGCC
*
26332674 AACGGGCT
1 AACGGGCC
*
26332682 AATGGGCC
1 AACGGGCC
26332690 AACGGGCC
1 AACGGGCC
26332698 CACTTTGGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.38, T:0.07
Consensus pattern (8 bp):
AACGGGCC
Found at i:26332679 original size:16 final size:16
Alignment explanation
Indices: 26332658--26332697 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
26332648 ATGGGCCGAA
26332658 AACGGGCCAATGGGCC
1 AACGGGCCAATGGGCC
*
26332674 AACGGGCTAATGGGCC
1 AACGGGCCAATGGGCC
26332690 AACGGGCC
1 AACGGGCC
26332698 CACTTTGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.25, C:0.30, G:0.38, T:0.07
Consensus pattern (16 bp):
AACGGGCCAATGGGCC
Found at i:26334806 original size:402 final size:402
Alignment explanation
Indices: 26334062--26334865 Score: 1572
Period size: 402 Copynumber: 2.0 Consensus size: 402
26334052 TCTCCGGCCC
26334062 AAGTCTGTAAGTTTTCTGAGCCTTTCTGATTGTTTCTGAGATATCTGTTATATGCTTGTACAAAA
1 AAGTCTGTAAGTTTTCTGAGCCTTTCTGATTGTTTCTGAGATATCTGTTATATGCTTGTACAAAA
26334127 CCTTATCATGGTACTTTAGTTAGGGTAACACTGGAATTATAGAAACTCTGATAAGTAGATTGAGA
66 CCTTATCATGGTACTTTAGTTAGGGTAACACTGGAATTATAGAAACTCTGATAAGTAGATTGAGA
26334192 CTGTAGCTAGGCTACCGCCCAAGAAAACAAACTTAAAACTCTGAATTACTGTTATTCATAAGACA
131 CTGTAGCTAGGCTACCGCCCAAGAAAACAAACTTAAAACTCTGAATTACTGTTATTCATAAGACA
26334257 TTTGTAATAAATACTGAAACATTAAACTGATTCATAAAATTCTTAATCAGATAATACGATATGAG
196 TTTGTAATAAATACTGAAACATTAAACTGATTCATAAAATTCTTAATCAGATAATACGATATGAG
26334322 TACGAGAGCTACTCGTGGAAGAGGCCGTGGACGTGGCCGATGTAATGAACAGGCTGAATCTTCAT
261 TACGAGAGCTACTCGTGGAAGAGGCCGTGGACGTGGCCGATGTAATGAACAGGCTGAATCTTCAT
26334387 CTTCAGGACATGTGCCGGCAGCAGATACACCGGTACCACCGGCAATAAAAGTGGAGTCTCATGAT
326 CTTCAGGACATGTGCCGGCAGCAGATACACCGGTACCACCGGCAATAAAAGTGGAGTCTCATGAT
*
26334452 CGTGGTGCCGGG
391 CGTGGTACCGGG
* *
26334464 AAGTCTGTAAGTTTTCTGAGCCTTTTTGATTGTTTTTGAGATATCTGTTATATGCTTGTACAAAA
1 AAGTCTGTAAGTTTTCTGAGCCTTTCTGATTGTTTCTGAGATATCTGTTATATGCTTGTACAAAA
*
26334529 CCTTATCATGGTACTTTAGTTAGGGTAACACTGGAATTATAGAAACTCTGTTAAGTAGATTGAGA
66 CCTTATCATGGTACTTTAGTTAGGGTAACACTGGAATTATAGAAACTCTGATAAGTAGATTGAGA
26334594 CTGTAGCTAGGCTACCGCCCAAGAAAACAAACTTAAAACTCTGAATTACTGTTATTCATAAGACA
131 CTGTAGCTAGGCTACCGCCCAAGAAAACAAACTTAAAACTCTGAATTACTGTTATTCATAAGACA
26334659 TTTGTAATAAATACTGAAACATTAAACTGATTCATAAAATTCTTAATCAGATAATACGATATGAG
196 TTTGTAATAAATACTGAAACATTAAACTGATTCATAAAATTCTTAATCAGATAATACGATATGAG
26334724 TACGAGAGCTACTCGTGGAAGAGGCCGTGGACGTGGCCGATGTAATGAACAGGCTGAATCTTCAT
261 TACGAGAGCTACTCGTGGAAGAGGCCGTGGACGTGGCCGATGTAATGAACAGGCTGAATCTTCAT
26334789 CTTCAGGACATGTGCCGGCAGCAGATACACCGGTACCACCGGCAATAAAAGTGGAGTCTCATGAT
326 CTTCAGGACATGTGCCGGCAGCAGATACACCGGTACCACCGGCAATAAAAGTGGAGTCTCATGAT
26334854 CGTGGTACCGGG
391 CGTGGTACCGGG
26334866 GATGACGCCC
Statistics
Matches: 398, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
402 398 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (402 bp):
AAGTCTGTAAGTTTTCTGAGCCTTTCTGATTGTTTCTGAGATATCTGTTATATGCTTGTACAAAA
CCTTATCATGGTACTTTAGTTAGGGTAACACTGGAATTATAGAAACTCTGATAAGTAGATTGAGA
CTGTAGCTAGGCTACCGCCCAAGAAAACAAACTTAAAACTCTGAATTACTGTTATTCATAAGACA
TTTGTAATAAATACTGAAACATTAAACTGATTCATAAAATTCTTAATCAGATAATACGATATGAG
TACGAGAGCTACTCGTGGAAGAGGCCGTGGACGTGGCCGATGTAATGAACAGGCTGAATCTTCAT
CTTCAGGACATGTGCCGGCAGCAGATACACCGGTACCACCGGCAATAAAAGTGGAGTCTCATGAT
CGTGGTACCGGG
Found at i:26343854 original size:11 final size:11
Alignment explanation
Indices: 26343832--26343861 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26343822 ACTTAATAAG
26343832 TTTTAT-ATAT
1 TTTTATAATAT
26343842 TTTTATAATAT
1 TTTTATAATAT
26343853 TTTTATAAT
1 TTTTATAAT
26343862 TAATATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.32
11 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTATAATAT
Found at i:26349350 original size:23 final size:23
Alignment explanation
Indices: 26349324--26349369 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26349314 GGTTGTGATT
26349324 AGCGAAGATATTGTGTTTGATGA
1 AGCGAAGATATTGTGTTTGATGA
26349347 AGCGAAGATATTGTGTTTGATGA
1 AGCGAAGATATTGTGTTTGATGA
26349370 GGAGAACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.35
Consensus pattern (23 bp):
AGCGAAGATATTGTGTTTGATGA
Found at i:26354183 original size:23 final size:23
Alignment explanation
Indices: 26354156--26354211 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
26354146 GGACTTGGTT
26354156 GTGATTGGTTTGAATGCCTATTG
1 GTGATTGGTTTGAATGCCTATTG
26354179 GTGATTGGTTTGAATGCCTATTG
1 GTGATTGGTTTGAATGCCTATTG
*
26354202 TTGATATGGT
1 GTGAT-TGGT
26354212 CATATGCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.18, C:0.07, G:0.30, T:0.45
Consensus pattern (23 bp):
GTGATTGGTTTGAATGCCTATTG
Found at i:26355707 original size:90 final size:90
Alignment explanation
Indices: 26355554--26355729 Score: 298
Period size: 90 Copynumber: 2.0 Consensus size: 90
26355544 ATCTAGAGTT
26355554 AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAGGACCACAGTCCAACTTCTATA
1 AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAGGACCACAGTCCAACTTCTATA
*
26355619 ACCCCTCATGGCGAAACCATTTATC
66 ACCCCTCATGGCAAAACCATTTATC
* * * *
26355644 AGTCTACTATGTAGGATATTAAAATCAGAATAGAAGTGGGCAGGGACCACAGTCTAACTTCTATA
1 AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAGGACCACAGTCCAACTTCTATA
*
26355709 ACCCTTCATGGCAAAACCATT
66 ACCCCTCATGGCAAAACCATT
26355730 CTAACTTCTC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (90 bp):
AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAGGACCACAGTCCAACTTCTATA
ACCCCTCATGGCAAAACCATTTATC
Found at i:26355738 original size:33 final size:33
Alignment explanation
Indices: 26355696--26355800 Score: 92
Period size: 33 Copynumber: 3.3 Consensus size: 33
26355686 GGGACCACAG
26355696 TCTAACTTCTATAACCCTTCATGGCAAAACCAT
1 TCTAACTTCTATAACCCTTCATGGCAAAACCAT
* ***** * ** *
26355729 TCTAACTTC--TCAGTGGGCA-GGGACCA-CAG
1 TCTAACTTCTATAACCCTTCATGGCAAAACCAT
26355758 TCTAACTTCTATAACCCTTCATGGCAAAACCAT
1 TCTAACTTCTATAACCCTTCATGGCAAAACCAT
26355791 TCTAACTTCT
1 TCTAACTTCT
26355801 CTTGGAGTAA
Statistics
Matches: 48, Mismatches: 20, Indels: 8
0.63 0.26 0.11
Matches are distributed among these distances:
29 11 0.23
30 4 0.08
31 8 0.17
32 4 0.08
33 21 0.44
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (33 bp):
TCTAACTTCTATAACCCTTCATGGCAAAACCAT
Found at i:26355775 original size:62 final size:62
Alignment explanation
Indices: 26355678--26355801 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
26355668 TCAGAATAGA
26355678 AGTGGGCAGGGACCACAGTCTAACTTCTATAACCCTTCATGGCAAAACCATTCTAACTTCTC
1 AGTGGGCAGGGACCACAGTCTAACTTCTATAACCCTTCATGGCAAAACCATTCTAACTTCTC
26355740 AGTGGGCAGGGACCACAGTCTAACTTCTATAACCCTTCATGGCAAAACCATTCTAACTTCTC
1 AGTGGGCAGGGACCACAGTCTAACTTCTATAACCCTTCATGGCAAAACCATTCTAACTTCTC
26355802 TTGGAGTAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (62 bp):
AGTGGGCAGGGACCACAGTCTAACTTCTATAACCCTTCATGGCAAAACCATTCTAACTTCTC
Found at i:26358639 original size:23 final size:23
Alignment explanation
Indices: 26358609--26358658 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26358599 GAAAAGGAAC
*
26358609 AAAA-GTGAGATAATTTGGGTAT
1 AAAACGTGAGATAATTTGGGTAG
26358631 AAAACGTGAGATAATTTGGGTAG
1 AAAACGTGAGATAATTTGGGTAG
26358654 AAAAC
1 AAAAC
26358659 CAAATGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.44, C:0.04, G:0.26, T:0.26
Consensus pattern (23 bp):
AAAACGTGAGATAATTTGGGTAG
Found at i:26364441 original size:168 final size:168
Alignment explanation
Indices: 26364205--26364543 Score: 651
Period size: 168 Copynumber: 2.0 Consensus size: 168
26364195 CTCCGGTGCC
*
26364205 GATCCTATAAGTATTTCTGAAACTGAGATAGTTTATTATGGAAATATTGTAGATAGTACCTTCTG
1 GATCCTATAAGTATTTCTGAAACTGAGATAGTTTATTATGGAAATATTGCAGATAGTACCTTCTG
26364270 ATATTGTACAGAGATAGTTAGAAAACTGAACTGAAACTTCTGGAAACACTTCTAAACTACTAATA
66 ATATTGTACAGAGATAGTTAGAAAACTGAACTGAAACTTCTGGAAACACTTCTAAACTACTAATA
*
26364335 AATTGTGCATAAAATATCTGCTAATAAATATTGAAACT
131 AATTGTGCAGAAAATATCTGCTAATAAATATTGAAACT
26364373 GATCCTATAAGTATTTCTGAAACTGAGATAGTTTATTATGGAAATATTGCAGATAGTACCTTCTG
1 GATCCTATAAGTATTTCTGAAACTGAGATAGTTTATTATGGAAATATTGCAGATAGTACCTTCTG
*
26364438 ATATTGTACAGAGATAGTTAGAAAACTGAACTGAAACTTCTGGAAACACTTCTAAACTACTGATA
66 ATATTGTACAGAGATAGTTAGAAAACTGAACTGAAACTTCTGGAAACACTTCTAAACTACTAATA
26364503 AATTGTGCAGAAAATATCTGCTAATAAATATTGAAACT
131 AATTGTGCAGAAAATATCTGCTAATAAATATTGAAACT
26364541 GAT
1 GAT
26364544 GCATAAAATT
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.33
Consensus pattern (168 bp):
GATCCTATAAGTATTTCTGAAACTGAGATAGTTTATTATGGAAATATTGCAGATAGTACCTTCTG
ATATTGTACAGAGATAGTTAGAAAACTGAACTGAAACTTCTGGAAACACTTCTAAACTACTAATA
AATTGTGCAGAAAATATCTGCTAATAAATATTGAAACT
Found at i:26369609 original size:48 final size:47
Alignment explanation
Indices: 26369485--26369653 Score: 207
Period size: 48 Copynumber: 3.6 Consensus size: 47
26369475 CCATTTGTGT
* * *
26369485 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-TG-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATCA-A
* *
26369531 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-TCAA
* * * *
26369579 GCCAGTATAAGACATGTCTGGGACATGCATCGGCCTCGCGATAGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-TCAA
*
26369627 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
26369654 GCGTCAGCTT
Statistics
Matches: 106, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
46 35 0.33
47 1 0.01
48 68 0.64
49 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATCAA
Found at i:26375069 original size:64 final size:64
Alignment explanation
Indices: 26374871--26375196 Score: 290
Period size: 64 Copynumber: 5.0 Consensus size: 64
26374861 ATATAGTTCG
* * *
26374871 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTAT-CTCG
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACA-TATATCCT-G
26374932 TA
63 TA
* * * * * *
26374934 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGCGACCTAGCTACATATATGCC-
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGTGACCTAGCTACATATAT-CCT
26374998 GTA
62 GTA
*
26375001 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATATATCCTGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACATATATCCTGTA
* ** *
26375065 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATACGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAT-AT-A--TCCT
26375130 GTA
62 GTA
* * * * **
26375133 GCTTTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATACTAT-CTG
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGTGACCTAGCTACATA-TATCCTG
26375195 TA
63 TA
26375197 TCATCCAATC
Statistics
Matches: 220, Mismatches: 27, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
62 1 0.00
63 20 0.09
64 90 0.41
65 3 0.01
66 24 0.11
67 30 0.14
68 50 0.23
69 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACATATATCCTGTA
Found at i:26383405 original size:23 final size:23
Alignment explanation
Indices: 26383378--26383439 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
26383368 GGTTTTTTTT
* *
26383378 TTTTTTCTGTGTATGTGTTTTAAG
1 TTTTATCTGTCTATGTG-TTTAAG
* *
26383402 TTTTATTTTTCTATGTGTTTAAG
1 TTTTATCTGTCTATGTGTTTAAG
* *
26383425 TTTTATTTTTCTATG
1 TTTTATCTGTCTATG
26383440 AATAGATCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 21 0.62
24 13 0.38
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.66
Consensus pattern (23 bp):
TTTTATCTGTCTATGTGTTTAAG
Found at i:26383405 original size:24 final size:23
Alignment explanation
Indices: 26383389--26383439 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
26383379 TTTTTCTGTG
*
26383389 TATGTGTTTTAAGTTTTATTTTTC
1 TATGTG-TTTAAGTTTTATTTGTC
*
26383413 TATGTGTTTAAGTTTTATTTTTC
1 TATGTGTTTAAGTTTTATTTGTC
26383436 TATG
1 TATG
26383440 AATAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.18, C:0.04, G:0.14, T:0.65
Consensus pattern (23 bp):
TATGTGTTTAAGTTTTATTTGTC
Found at i:26387938 original size:40 final size:40
Alignment explanation
Indices: 26387894--26388120 Score: 411
Period size: 40 Copynumber: 5.7 Consensus size: 40
26387884 CCAACCCAAT
* *
26387894 TGCCTTCGGGATTTAACTCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
26387934 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCGCGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
26387974 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
26388014 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACCG-A
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCA-CGAA
26388054 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
26388094 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
26388121 TCCTCAATTG
Statistics
Matches: 181, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
39 2 0.01
40 177 0.98
41 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:26390113 original size:49 final size:49
Alignment explanation
Indices: 26390057--26390324 Score: 275
Period size: 49 Copynumber: 5.6 Consensus size: 49
26390047 ATCTAAGTCG
* **
26390057 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCA
* * * *
26390106 ATGCCATGTCCCAGACAGGTCTTGCACTGACTCTCATCTATC-AGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GCCA
* *
26390155 ATGCCATGTCCCAGGCAGGTCTTACACT-AGCT-TGCATATCTCGAGGCCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATCGAGGCCA
* * * * *
26390204 ATG-CATGTCCCAGACATGTCTTACACTGGCTCTCGTAT-T-AATGCCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCA
* * *
26390250 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAGA-AT-GTGGCCA
1 ATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCGAGGCCA
*
26390298 ATG-CATGTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
26390325 AGCACACATC
Statistics
Matches: 186, Mismatches: 24, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
46 18 0.10
47 27 0.15
48 58 0.31
49 81 0.44
50 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCA
Found at i:26390176 original size:98 final size:96
Alignment explanation
Indices: 26390030--26390324 Score: 316
Period size: 98 Copynumber: 3.1 Consensus size: 96
26390020 CAACCATGGC
* * * *
26390030 CTTACACTGGCTCACATATCTAA-GTCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCA
1 CTTACACTGACTCTCCTATC-AATGTCGATGCCATGTCCCAGACAGGTCTTACACTGAGCTTGCA
**
26390093 TATATCGAGGCTGATGCCATGTCCCAGACAGGT
65 TATATCGAGGCCAATG-CATGTCCCAGACAGGT
* * *
26390126 CTTGCACTGACTCTCATCTATCAGTGTCGATGCCATGTCCCAGGCAGGTCTTACACT-AGCTTGC
1 CTTACACTGACTCTC--CTATCAATGTCGATGCCATGTCCCAGACAGGTCTTACACTGAGCTTGC
* *
26390190 ATATCTCGAGGCCAATGCATGTCCCAGACATGT
64 ATATATCGAGGCCAATGCATGTCCCAGACAGGT
* * * * *
26390223 CTTACACTGGCTCTCGTATTAATGCCAATGCCATGTCCCAGACATGGTCTTACACTG-GCTCT-C
1 CTTACACTGACTCTCCTATCAATGTCGATGCCATGTCCCAGACA-GGTCTTACACTGAGCT-TGC
* * *
26390286 AGA-AT-GTGGCCAATGCATGTCCCAGACATGT
64 ATATATCGAGGCCAATGCATGTCCCAGACAGGT
26390317 CTTACACT
1 CTTACACT
26390325 AGCACACATC
Statistics
Matches: 170, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
94 33 0.19
95 24 0.14
96 29 0.17
97 31 0.18
98 53 0.31
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
CTTACACTGACTCTCCTATCAATGTCGATGCCATGTCCCAGACAGGTCTTACACTGAGCTTGCAT
ATATCGAGGCCAATGCATGTCCCAGACAGGT
Found at i:26390305 original size:47 final size:45
Alignment explanation
Indices: 26390198--26390324 Score: 184
Period size: 47 Copynumber: 2.7 Consensus size: 45
26390188 GCATATCTCG
*
26390198 AGGCCAATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTATT
1 AGGCCAATGCATGTCCCAGACATGTCTTACACTGGCTCTCGAATT
*
26390243 AATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAGAATGT
1 -AGGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-GAAT-T
26390293 -GGCCAATGCATGTCCCAGACATGTCTTACACT
1 AGGCCAATGCATGTCCCAGACATGTCTTACACT
26390325 AGCACACATC
Statistics
Matches: 74, Mismatches: 3, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
46 18 0.24
47 28 0.38
48 24 0.32
49 3 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
AGGCCAATGCATGTCCCAGACATGTCTTACACTGGCTCTCGAATT
Found at i:26391563 original size:34 final size:34
Alignment explanation
Indices: 26391520--26391590 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
26391510 ATCTATTTAA
*
26391520 TACCTTCAGCTATTAGAATGTAACTTTTGCACTT
1 TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
26391554 TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
1 TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
26391588 TAC
1 TAC
26391591 ATGATTTAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (34 bp):
TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
Found at i:26392325 original size:46 final size:46
Alignment explanation
Indices: 26392023--26392348 Score: 250
Period size: 46 Copynumber: 6.9 Consensus size: 46
26392013 GGGTTAAGAT
*
26392023 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAT--CGAG
* * * * *
26392073 GCCGATGCCATGTCCCAAACAGGTCTTACACT-GACACACA-A-C-AA
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAG-CTCTCATATCGAG
* * * *
26392117 GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCACGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATAT--CGAG
* * * * * * *
26392166 GCTGAAGCATGTCCCAGTCATGTCTTACACTAGCTCTCGTCTCAAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCGAG
* * * * *
26392212 ACTGATGAATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATATC--GAG
* * *
26392260 GCCGATGCATATCCCAGACATGTCTTACACTAGCTCTCATATTGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCGAG
* *
26392306 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATC
26392349 ATCCAATGTC
Statistics
Matches: 220, Mismatches: 43, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
44 32 0.15
45 4 0.02
46 76 0.35
48 66 0.30
49 22 0.10
50 20 0.09
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCGAG
Found at i:26392348 original size:94 final size:94
Alignment explanation
Indices: 26392024--26392339 Score: 273
Period size: 94 Copynumber: 3.4 Consensus size: 94
26392014 GGTTAAGATG
** * *
26392024 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATAT-AGCGAGGCCGATGCCATGTCC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTAAATATCA-CGAGGCCGAAG-CATATCC
* * * * *
26392088 CAAACAGGTCTTACACT-GACACACA-A-CAA-G
62 CAGACATGTCTTACACTAG-CTCTCATATCAACA
* * * ** * *
26392118 CTGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCTGAAGCATGTCCCAG
1 CCGATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACGAGGCCGAAGCATATCCCAG
* * *
26392183 TCATGTCTTACACTAGCTCTCGTCTCAACA
65 ACATGTCTTACACTAGCTCTCATATCAACA
* * * ** *
26392213 CTGATGAATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGAGGCCGATGCATATCCCAGA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACGAGGCCGAAGCATATCCCAGA
*****
26392278 CATGTCTTACACTAGCTCTCATATTGTGG
66 CATGTCTTACACTAGCTCTCATATCAACA
26392307 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
26392340 ACACATATCA
Statistics
Matches: 180, Mismatches: 37, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
92 24 0.13
93 29 0.16
94 122 0.68
95 5 0.03
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (94 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACGAGGCCGAAGCATATCCCAGA
CATGTCTTACACTAGCTCTCATATCAACA
Found at i:26398982 original size:51 final size:51
Alignment explanation
Indices: 26398912--26399019 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
26398902 GTAGTGACAA
* * *
26398912 TAAATAACAATACCGGGCTCCATGAGTCTGGTAATTGGAATGAGTACAATC
1 TAAATCACAATACCGGGCTCCATGAGTCTAGTAATTAGAATGAGTACAATC
* ** *
26398963 TAAATCACAATACTGGGCTCTGTGAGTCTAGTAATTAGAATGAGTACAATT
1 TAAATCACAATACCGGGCTCCATGAGTCTAGTAATTAGAATGAGTACAATC
26399014 TAAATC
1 TAAATC
26399020 CCTTAACGAG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (51 bp):
TAAATCACAATACCGGGCTCCATGAGTCTAGTAATTAGAATGAGTACAATC
Found at i:26401591 original size:13 final size:13
Alignment explanation
Indices: 26401573--26401605 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
26401563 GGTTGTTTAT
26401573 TAAACTAATTAAC
1 TAAACTAATTAAC
26401586 TAAACTAATTAAC
1 TAAACTAATTAAC
26401599 T-AACTAA
1 TAAACTAA
26401606 AGTAAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:26401777 original size:56 final size:56
Alignment explanation
Indices: 26401710--26401822 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
26401700 TCTGACTTTG
26401710 AACCAGGCGATTTATTCACTTGACTTGATCCGTGAGATTCCCTAACCTATATTATT
1 AACCAGGCGATTTATTCACTTGACTTGATCCGTGAGATTCCCTAACCTATATTATT
26401766 AACCAGGCGATTTATTCACTTGACTTGATCCGTGAGATTCCCTAACCTATATTATT
1 AACCAGGCGATTTATTCACTTGACTTGATCCGTGAGATTCCCTAACCTATATTATT
26401822 A
1 A
26401823 TCTCTTTTGA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (56 bp):
AACCAGGCGATTTATTCACTTGACTTGATCCGTGAGATTCCCTAACCTATATTATT
Found at i:26402103 original size:14 final size:14
Alignment explanation
Indices: 26402084--26402113 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26402074 TTAACTCAAG
*
26402084 CATTAAGAACACAT
1 CATTAAGAACAAAT
26402098 CATTAAGAACAAAT
1 CATTAAGAACAAAT
26402112 CA
1 CA
26402114 AGTATTTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (14 bp):
CATTAAGAACAAAT
Found at i:26402795 original size:21 final size:22
Alignment explanation
Indices: 26402771--26402811 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26402761 TTGGATTAAG
*
26402771 AGTGCCAAA-ATCCATAAATCT
1 AGTGACAAACATCCATAAATCT
*
26402792 AGTGATAAACATCCATAAAT
1 AGTGACAAACATCCATAAAT
26402812 ATGCTTATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.46, C:0.20, G:0.10, T:0.24
Consensus pattern (22 bp):
AGTGACAAACATCCATAAATCT
Found at i:26404605 original size:6 final size:6
Alignment explanation
Indices: 26404596--26404640 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
26404586 AATAAAATTG
*
26404596 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
26404641 GATAGGAGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:26409635 original size:13 final size:13
Alignment explanation
Indices: 26409617--26409649 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
26409607 GGTTGTTTAT
26409617 TAAACTAATTAAC
1 TAAACTAATTAAC
26409630 TAAACTAATTAAC
1 TAAACTAATTAAC
26409643 T-AACTAA
1 TAAACTAA
26409650 ACTAAAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:26421007 original size:35 final size:35
Alignment explanation
Indices: 26420968--26421038 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
26420958 CATCTCCGTA
* * *
26420968 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGACAAATATGGAAAGGAATCTTAAAAGATAT
* *
26421003 GCTTGACAAATATGGAAGGGGATCTTAAAAGATAT
1 GCTTGACAAATATGGAAAGGAATCTTAAAAGATAT
26421038 G
1 G
26421039 TGATCCTAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (35 bp):
GCTTGACAAATATGGAAAGGAATCTTAAAAGATAT
Found at i:26422830 original size:28 final size:28
Alignment explanation
Indices: 26422790--26422896 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
26422780 GAATCTTTCG
* *
26422790 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
26422818 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
26422846 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
26422874 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
26422897 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:26428001 original size:57 final size:58
Alignment explanation
Indices: 26427890--26428002 Score: 158
Period size: 57 Copynumber: 2.0 Consensus size: 58
26427880 CCCAATCCCA
* * *
26427890 AAAGGTAGAATTTAGATACCGTTACATGTTCGGCACCCAATAATGAATGAATCGTCTC
1 AAAGGTAAAATTTAGATACCGTTACATGTCCGGCACCCAACAATGAATGAATCGTCTC
* *
26427948 AAAGGTAAAATTT-GAATACCGTTGCATG-CCGGTACCCAACAATGAATGAATCGTC
1 AAAGGTAAAATTTAG-ATACCGTTACATGTCCGGCACCCAACAATGAATGAATCGTC
26428003 CCTGTCCCTC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 25 0.51
58 24 0.49
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (58 bp):
AAAGGTAAAATTTAGATACCGTTACATGTCCGGCACCCAACAATGAATGAATCGTCTC
Found at i:26430995 original size:29 final size:28
Alignment explanation
Indices: 26430933--26431034 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
26430923 GTGACGAGAT
* * *
26430933 TGGCACTGAGTGTGCGGCTTGTAATGTA
1 TGGCACTAAGTGTGCGGCTTGGAATATA
* *
26430961 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCG-GCTTGGAATATA
* *
26430990 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGC-GGCTTGGAAT-ATA
26431019 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26431035 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 19 0.31
29 41 0.67
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGGCTTGGAATATA
Found at i:26437550 original size:24 final size:24
Alignment explanation
Indices: 26437523--26437569 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
26437513 CCATCCTGAC
*
26437523 GGTGCTCCGGTGAGCCATCCCAGT
1 GGTGCTCCGGGGAGCCATCCCAGT
26437547 GGTGCTCCGGGGAGCCATCCCAG
1 GGTGCTCCGGGGAGCCATCCCAG
26437570 AATATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.34, G:0.36, T:0.17
Consensus pattern (24 bp):
GGTGCTCCGGGGAGCCATCCCAGT
Found at i:26437846 original size:42 final size:43
Alignment explanation
Indices: 26437794--26437888 Score: 147
Period size: 42 Copynumber: 2.2 Consensus size: 43
26437784 GACGTCTGTG
* *
26437794 GTGCGAGAGCCTCGAGCAGCATCAACACCTTGGTG-CTCGAAT
1 GTGCGGGAGCCTCGAGCAGCATCAACACCTTAGTGCCTCGAAT
* *
26437836 GTGCGGGAGCCTCGAGCAGCATCGACACCTTAGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATCAACACCTTAGTGCCTCGAAT
26437879 GTGCGGGAGC
1 GTGCGGGAGC
26437889 ATCGGACACC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 32 0.67
43 16 0.33
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATCAACACCTTAGTGCCTCGAAT
Found at i:26437902 original size:43 final size:42
Alignment explanation
Indices: 26437794--26437902 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
26437784 GACGTCTGTG
* * * * *
26437794 GTGCGAGAGCCTCGAGCAGCATCAACACCTTGGTGCTCGAAT
1 GTGCGGGAGCATCGAGCACCATCGACACCTTAGTGCTCGAAT
* * *
26437836 GTGCGGGAGCCTCGAGCAGCATCGACACCTTAGTGCCTCGGAT
1 GTGCGGGAGCATCGAGCACCATCGACACCTTAGTG-CTCGAAT
26437879 GTGCGGGAGCATCG-GACACCATCG
1 GTGCGGGAGCATCGAG-CACCATCG
26437903 GCAAACTAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 33 0.56
43 26 0.44
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.17
Consensus pattern (42 bp):
GTGCGGGAGCATCGAGCACCATCGACACCTTAGTGCTCGAAT
Found at i:26437925 original size:43 final size:43
Alignment explanation
Indices: 26437879--26438714 Score: 671
Period size: 43 Copynumber: 19.6 Consensus size: 43
26437869 TGCCTCGGAT
* * * *
26437879 GTGCGGGAGCATCGGACACCATCGGCAAACTAGG-CCACTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCA-TGGTC
* * * * *
26437922 GTGCAGGAGCCTCGGGCACCATCGGTAATCGAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * *
26437965 GTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCATGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * * *
26438008 GTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTCGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* *
26438051 GTGCGGGAGCCTCGGGCACCATC-G-ATACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAGGCCCATGGTC
* ** *
26438093 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGG-TC
** * * *
26438135 GTGTAGGAGCCTCGGACACCATCGACAACCAAGGCCCATGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * * * * *
26438178 GTGCGGGAGCGTCAGGCACCATCGGCAACCTAAGCCCCTAGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* ** *
26438221 GTGCGGGAGCCTTGGGCACCATCGATAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
** * *
26438264 GTGCAAGAGCCTCGGG-ACCATCAGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* ** ** * ** *
26438305 CT-CTGGGAGCCTCGGGCATTATCAAC-ACCTTGGTGCTTGGAT-
1 GTGC-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGG-TC
* * * * * *
26438347 GTGCAGCAGCCCCGGACACCATCGGCAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * * ** *
26438390 GTGCGGGAGCCTCAGGCACCATCGAC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGG-TC
* * * *
26438432 GTGCGGCAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
*
26438475 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * * *
26438518 GTGCGGGAGCCTCAGGCACCATTGGTAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * * * * ** *
26438560 GTACGAGAGCCTCGGGCACCATCGAC-ACATTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGG-TC
* ** * *
26438602 GTGCGGAAGCCTCGAACACCATCAGG-AACCTAGGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCATGGTC
* * *
26438645 GTGTGGGAGCCTCGGGCACCATCGGTAACCTACGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCATGGTC
* *
26438688 GTGCGGGAGCCTCGGACACCATTGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
26438715 CCTTAGTGCC
Statistics
Matches: 629, Mismatches: 141, Indels: 46
0.77 0.17 0.06
Matches are distributed among these distances:
40 1 0.00
41 33 0.05
42 194 0.31
43 397 0.63
44 4 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
Found at i:26438183 original size:170 final size:170
Alignment explanation
Indices: 26437879--26438806 Score: 818
Period size: 170 Copynumber: 5.4 Consensus size: 170
26437869 TGCCTCGGAT
* * * * * * *
26437879 GTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCAC-TGGTTGTGCAGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGAC-ACCTAGGCC-CTTGGATGTGCGGGAGCCTCGGACACCA
* * ** * *
26437943 TCGGTAATCGAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCATGATC
64 TCGG-AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTC
* * *
26438008 GTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTCGTC
128 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
* * * *
26438051 GTGCGGGAGCCTCGGGCACCATCGATACCTAGGCCCCTAG-TCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGACACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGACACCAT
* * ** * * * *
26438115 CGGCACCTTGGTGCTTGGAT-GTGTAGGAGCCTCGGACACCATCGACAACCAAGGCCCATGGTCG
65 CGGAACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTCG
* * * * *
26438179 TGCGGGAGCGTCAGGCACCATCGGCAACCTAAGCCCCTAGTT
129 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
* * ** *
26438221 GTGCGGGAGCCTTGGGCACCATCGATAACCTAGGCCCTTGG-TCGTGCAAGAGCCTCGG-GACCA
1 GTGCGGGAGCCTCGGGCACCATCGA-CACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGACACCA
* * * * ** ** * ** *
26438284 TCAGCACCTAGGCCCTTGGTCCTCTGGGAGCCTCGGGCATTATCAAC-ACCTTGGTGCTTGGAT-
64 TCGGAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGG-TC
* * * *
26438347 GTGCAGCAGCCCCGGACACCATCGGCAACCTAGGCCCTTAGTC
128 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
* * ** *
26438390 GTGCGGGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATC
* *
26438455 GGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGT
66 GG-AACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTCGT
* * * *
26438520 GCGGGAGCCTCAGGCACCATTGGTAACCTAGG-CCTTGGTC
130 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
* * * * ** * *
26438560 GTACGAGAGCCTCGGGCACCATCGACACATTGGTGCTTGGATGTGCGGAAGCCTCGAACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATC
* * *
26438625 AGGAACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGTAACCTACGG-CCTTGGTCG
66 -GGAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCATGGTCG
* * *
26438689 TGCGGGAGCCTCGGACACCATTGGC-ACCTTAGTG-CCTCAGAT-
129 TGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTAG-TC
* * * * * * * ** * * *
26438731 GTGCGAGAACCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAACACCATA
1 GTGCGGGAGCCTCGGGCACCATCGACACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATC
26438796 GGCAACCTAGG
66 GG-AACCTAGG
26438807 ACGTTGGATG
Statistics
Matches: 622, Mismatches: 117, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
168 23 0.04
169 78 0.13
170 327 0.53
171 171 0.27
172 23 0.04
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (170 bp):
GTGCGGGAGCCTCGGGCACCATCGACACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATC
GGAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCATGGTCGTG
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
Found at i:26438400 original size:85 final size:85
Alignment explanation
Indices: 26437794--26438806 Score: 613
Period size: 85 Copynumber: 11.9 Consensus size: 85
26437784 GACGTCTGTG
* * * * * * * *
26437794 GTGCGAGAGCCTCGAGCAGCATCAACACCTTGGTGCTCGAATGTGCGGGAGCCTC-GAGCAGCAT
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGA-CACCAT
* *
26437858 CGAC-ACCTTAGTG-CCTCGGAT-
65 CGGCAACC-TAG-GCCCTTGG-TC
* * * * * * * * *
26437879 GTGCGGGAGCATCGGACACCATCGGCAAACTAGG-CCACTGGTTGTGCAGG-AGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGAC-ACCTTGGTGC-TTGGATGTGC-GGCAGCCTCGGACACC
* * *
26437942 ATCGGTAATCGAGGCCCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * ** * * *
26437965 GTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCAT-GATCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGCAGCCTCGGACACCA
* * *
26438029 TCAGTAACCTAGGCCCTTCGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * ** * * * *
26438051 GTGCGGGAGCCTCGGGCACCATCGATACCTAGGCCCCTAG-TCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGAT-GTGCGGCAGCCTCGGACACCAT
* **
26438115 CGGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
** * ** ** * * *
26438135 GTGTAGGAGCCTCGGACACCATCGACAACCAAGGCCCATGG-TCGTGCGGGAGCGTCAGG-CACC
1 GTGCGGGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGCAGCCTC-GGACACC
* * * *
26438198 ATCGGCAACCTAAGCCCCTAGTT
63 ATCGGCAACCTAGGCCCTTGGTC
* * * ** * *
26438221 GTGCGGGAGCCTTGGGCACCATCGATAACCTAGGCCCTTGG-TCGTGCAAG-AGCCTCGG-GACC
1 GTGCGGGAGCCTCGGGCACCATCGA-CACCTTGGTGCTTGGAT-GTGC-GGCAGCCTCGGACACC
*
26438283 ATCAGC-ACCTAGGCCCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* ** * * *
26438305 CT-CTGGGAGCCTCGGGCATTATCAACACCTTGGTGCTTGGATGTGCAGCAGCCCCGGACACCAT
1 GTGC-GGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCAT
*
26438369 CGGCAACCTAGGCCCTTAGTC
65 CGGCAACCTAGGCCCTTGGTC
*
26438390 GTGCGGGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCATC
*
26438455 GGTAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * ** * *
26438475 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCAGG-CACC
1 GTGCGGGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGCAGCCTC-GGACACC
* *
26438538 ATTGGTAACCTAGG-CCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * *
26438560 GTACGAGAGCCTCGGGCACCATCGACACATTGGTGCTTGGATGTGCGGAAGCCTCGAACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCATC
*
26438625 AGG-AACCTAGGCTCTTGGTC
66 -GGCAACCTAGGCCCTTGGTC
* * * *
26438645 GTGTGGGAGCCTCGGGCACCATCGGTA-ACCTACGG-CCTTGG-TCGTGCGGGAGCCTCGGACAC
1 GTGCGGGAGCCTCGGGCACCATC-G-ACACCT-TGGTGCTTGGAT-GTGCGGCAGCCTCGGACAC
* * *
26438707 CATTGGC-ACCTTAGTG-CCTCAGAT-
62 CATCGGCAACC-TAG-GCCCT-TGGTC
* * * * * * * * * *
26438731 GTGCGAGAACCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAACACCATA
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCATC
26438796 GGCAACCTAGG
66 GGCAACCTAGG
26438807 ACGTTGGATG
Statistics
Matches: 747, Mismatches: 138, Indels: 87
0.77 0.14 0.09
Matches are distributed among these distances:
82 2 0.00
83 24 0.03
84 109 0.15
85 327 0.44
86 269 0.36
87 16 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTC
Done.