Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 10 of 345
Found at i:3477332 original size:52 final size:52
Alignment explanation
Indices: 3477258--3477411 Score: 184
Period size: 53 Copynumber: 2.9 Consensus size: 52
3477248 ATATATCATA
* * * * * **
3477258 CCGATGCCATATCCCGGATATGGTCTTACACGGAAACACTTATCACTTTTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATCACTTTAAT
*
3477310 CTGATGCCATAGCCCAGCTATGGTCTTATACGG-ATCACTTGTATCACTTTAAT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-T-TATCACTTTAAT
* *
3477363 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGATATCGCTTATCACTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGA-ATCACTTATCACTT
3477412 GTTGCCATGG
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
51 4 0.05
52 29 0.33
53 49 0.56
54 1 0.01
55 4 0.05
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (52 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATCACTTTAAT
Found at i:3478972 original size:24 final size:24
Alignment explanation
Indices: 3478945--3478995 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
3478935 AATAGGTTGG
*
3478945 AAATAAACAATTTTTAAAT-TATCT
1 AAATAAA-AATTTATAAATCTATCT
**
3478969 AAATTCAAATTTATAAATCTATCT
1 AAATAAAAATTTATAAATCTATCT
3478993 AAA
1 AAA
3478996 AAATATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (24 bp):
AAATAAAAATTTATAAATCTATCT
Found at i:3491879 original size:33 final size:35
Alignment explanation
Indices: 3491784--3491880 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
3491774 TTAATATTTT
*
3491784 AATATATAGAATATAAATTTTAAATATTT--TTAAGC
1 AATATATA-AAT-TATATTTTAAATATTTAATTAAGC
* *
3491819 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
3491852 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
3491881 ATATAACTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:3491895 original size:33 final size:30
Alignment explanation
Indices: 3491819--3491899 Score: 78
Period size: 33 Copynumber: 2.7 Consensus size: 30
3491809 ATTTTTAAGC
3491819 AATA-AATATT-AATTATTTATAAAATTTA
1 AATATAATATTAAATTATTTATAAAATTTA
* * *
3491847 ATTAGAATATATAAATTATATTTTAAATATTTA
1 AATATAATAT-TAAATTAT-TTATAAA-ATTTA
3491880 AATATAACTATTAAA-TATTT
1 AATATAA-TATTAAATTATTT
3491900 GTAATTAGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 3 0.07
29 5 0.12
30 1 0.02
31 8 0.19
32 9 0.21
33 14 0.33
34 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
AATATAATATTAAATTATTTATAAAATTTA
Found at i:3500789 original size:22 final size:22
Alignment explanation
Indices: 3500763--3500804 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
3500753 ACAGTTAAAT
3500763 AAGGTAAACCCATCAAAGCTTA
1 AAGGTAAACCCATCAAAGCTTA
3500785 AAGGTAAACCCATCAAAGCT
1 AAGGTAAACCCATCAAAGCT
3500805 ATATGGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.24, G:0.14, T:0.17
Consensus pattern (22 bp):
AAGGTAAACCCATCAAAGCTTA
Found at i:3518777 original size:26 final size:24
Alignment explanation
Indices: 3518738--3518796 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
3518728 TTATTTCATT
* *
3518738 AAATAAA-AAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
3518761 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
3518787 AAATAAATAT
1 AAATAAATAT
3518797 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 7 0.23
26 14 0.45
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:3518808 original size:22 final size:22
Alignment explanation
Indices: 3518767--3518825 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
3518757 ATAATAAATC
* *
3518767 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
3518787 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
3518809 AAATAAA-ACTAAAACAA
1 AAATAAATATTAAAACAA
3518826 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 15 0.44
22 12 0.35
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:3518902 original size:15 final size:16
Alignment explanation
Indices: 3518872--3518904 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
3518862 AAATAGTTAT
3518872 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
3518889 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
3518904 A
1 A
3518905 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:3520762 original size:11 final size:12
Alignment explanation
Indices: 3520746--3520770 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3520736 GGTCATTTGC
3520746 TTTTTTCAATTT
1 TTTTTTCAATTT
3520758 TTTTTTCAATTT
1 TTTTTTCAATTT
3520770 T
1 T
3520771 ATGTTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTTCAATTT
Found at i:3520905 original size:20 final size:21
Alignment explanation
Indices: 3520868--3520906 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
3520858 AATAATTTTA
3520868 AAAAAATTTACTAAATAATGG
1 AAAAAATTTACTAAATAATGG
* *
3520889 AAAATATTTA-TACATAAT
1 AAAAAATTTACTAAATAAT
3520907 CATTTAATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAAATTTACTAAATAATGG
Found at i:3522719 original size:14 final size:14
Alignment explanation
Indices: 3522700--3522729 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3522690 ATATAATGTG
3522700 TTATTATATACGAA
1 TTATTATATACGAA
3522714 TTATTATATACGAA
1 TTATTATATACGAA
3522728 TT
1 TT
3522730 TGTTGTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (14 bp):
TTATTATATACGAA
Found at i:3522961 original size:35 final size:35
Alignment explanation
Indices: 3522871--3522961 Score: 123
Period size: 35 Copynumber: 2.6 Consensus size: 35
3522861 GGAAAAGTGT
* *
3522871 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTAA
1 GAAATGTAGGTATGGTAT-TTCCCATACCGAGTTAA
*
3522906 GAAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 GAAATGTAGGTATGGTATTTCCCATACCGAGTT-AA
3522942 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
3522962 AATGAGGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 1 0.02
35 47 0.94
36 2 0.04
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACCGAGTTAA
Found at i:3530377 original size:35 final size:34
Alignment explanation
Indices: 3530287--3530377 Score: 121
Period size: 35 Copynumber: 2.6 Consensus size: 34
3530277 GGCAAAGTGT
* *
3530287 GAAATGTAGGTATGGTATCATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTAA
*
3530322 GAAATGTAGGTATGGCATTTCCTATACCGAGTTGAA
1 GAAATGTAGGTATGGTATTTCC-ATACCGAGTT-AA
3530358 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
3530378 AATGAGGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 3 0.06
35 45 0.90
36 2 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (34 bp):
GAAATGTAGGTATGGTATTTCCATACCGAGTTAA
Found at i:3531864 original size:18 final size:19
Alignment explanation
Indices: 3531838--3531876 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
3531828 TTTCAATTCA
3531838 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
3531857 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
3531875 AT
1 AT
3531877 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:3533206 original size:5 final size:5
Alignment explanation
Indices: 3533196--3533248 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
3533186 TTACTTATTT
* *
3533196 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
3533244 ATATA
1 ATATA
3533249 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:3533212 original size:12 final size:12
Alignment explanation
Indices: 3533195--3533250 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
3533185 TTTACTTATT
3533195 TATATAATATAA
1 TATATAATATAA
3533207 TATATAATATAATA
1 TATATAATAT-A-A
3533221 TACTATAATATAA
1 TA-TATAATATAA
*
3533234 TA-ATAATTTAA
1 TATATAATATAA
3533245 TATATA
1 TATATA
3533251 TTTTAACACG
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:3542303 original size:33 final size:35
Alignment explanation
Indices: 3542266--3542331 Score: 100
Period size: 33 Copynumber: 1.9 Consensus size: 35
3542256 GTTAGTGGCT
*
3542266 GAAATTTGTCCGTGA-TTTC-TTTTGAGAATCATC
1 GAAATTTGTCAGTGATTTTCTTTTTGAGAATCATC
*
3542299 GAAATTTGTTAGTGATTTTCTTTTTGAGAATCA
1 GAAATTTGTCAGTGATTTTCTTTTTGAGAATCA
3542332 CAGACTGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 13 0.45
34 4 0.14
35 12 0.41
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (35 bp):
GAAATTTGTCAGTGATTTTCTTTTTGAGAATCATC
Found at i:3545877 original size:3 final size:3
Alignment explanation
Indices: 3545869--3545894 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
3545859 TTCACCAATC
3545869 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
3545895 CAGATGCGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:3546344 original size:13 final size:13
Alignment explanation
Indices: 3546322--3546359 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
3546312 TTAGTGTAAT
*
3546322 ATTTTTTTATATA
1 ATTTTATTATATA
3546335 ATTTTATTATA-A
1 ATTTTATTATATA
3546347 ATTTTGATTATAT
1 ATTTT-ATTATAT
3546360 TTATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 6 0.27
13 16 0.73
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (13 bp):
ATTTTATTATATA
Found at i:3548942 original size:21 final size:21
Alignment explanation
Indices: 3548918--3548957 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3548908 ATGTATGGTG
3548918 TTTTGTAATG-AAAACTCAAGA
1 TTTTG-AATGAAAAACTCAAGA
*
3548939 TTTTGATTGAAAAACTCAA
1 TTTTGAATGAAAAACTCAA
3548958 ATAGTACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (21 bp):
TTTTGAATGAAAAACTCAAGA
Found at i:3550312 original size:11 final size:11
Alignment explanation
Indices: 3550296--3550347 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
3550286 ATATATATAT
3550296 TTATTATTGTA
1 TTATTATTGTA
*
3550307 TTATTATT-AA
1 TTATTATTGTA
* *
3550317 ATATTATAAGTA
1 TTATTAT-TGTA
3550329 TTATTATTGTA
1 TTATTATTGTA
*
3550340 TGATTATT
1 TTATTATT
3550348 AAATATTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
10 7 0.22
11 18 0.56
12 7 0.22
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (11 bp):
TTATTATTGTA
Found at i:3550320 original size:25 final size:22
Alignment explanation
Indices: 3550304--3550361 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
3550294 ATTTATTATT
3550304 GTATTATTATTAAATATTATAA
1 GTATTATTATTAAATATTATAA
**
3550326 GTATTATTATTGTATGATTATTAA
1 GTATTATTATTAAAT-ATTA-TAA
*
3550350 ATATTATTATTA
1 GTATTATTATTA
3550362 TTCAACATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 13 0.43
23 4 0.13
24 13 0.43
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
GTATTATTATTAAATATTATAA
Found at i:3550361 original size:30 final size:31
Alignment explanation
Indices: 3550284--3550363 Score: 108
Period size: 33 Copynumber: 2.5 Consensus size: 31
3550274 TTATATATAT
*
3550284 ATATATATATATTTATTATTGTATTATTATTAA
1 ATAT-TATATA-TTATTATTGTATGATTATTAA
3550317 ATATTATAAGTATTATTATTGTATGATTATTAA
1 ATATTAT-A-TATTATTATTGTATGATTATTAA
3550350 ATATTAT-TATTATT
1 ATATTATATATTATT
3550364 CAACATGTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
30 7 0.16
32 3 0.07
33 32 0.73
34 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (31 bp):
ATATTATATATTATTATTGTATGATTATTAA
Found at i:3550811 original size:11 final size:11
Alignment explanation
Indices: 3550795--3550846 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
3550785 AATAATATTT
*
3550795 AATAATCATAC
1 AATAATAATAC
3550806 AATAATAATAC
1 AATAATAATAC
* **
3550817 TTATAAT-ATTT
1 -AATAATAATAC
3550828 AATAATAATAC
1 AATAATAATAC
3550839 AATAATAA
1 AATAATAA
3550847 AAATATGTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
10 5 0.16
11 22 0.69
12 5 0.16
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAATAC
Found at i:3555449 original size:3 final size:3
Alignment explanation
Indices: 3555441--3555466 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
3555431 AGAAGCAAAA
3555441 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
3555467 CCATCTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:3556455 original size:26 final size:24
Alignment explanation
Indices: 3556400--3556456 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
3556390 TGTGCACAAT
3556400 CATTTT-ATATTTTAGTTTATTTA
1 CATTTTAATATTTTAGTTTATTTA
* * *
3556423 TAATTTAATATTTTTATTTTTATTTA
1 CATTTTAATA-TTTTA-GTTTATTTA
3556449 CATTTTAA
1 CATTTTAA
3556457 AATCAAATCA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 4 0.15
24 3 0.12
25 5 0.19
26 14 0.54
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (24 bp):
CATTTTAATATTTTAGTTTATTTA
Found at i:3558151 original size:16 final size:17
Alignment explanation
Indices: 3558132--3558170 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
3558122 AATTATTTTT
3558132 TATAATTA-AATATAAA
1 TATAATTATAATATAAA
*
3558148 TATAA-TATAATTTAAA
1 TATAATTATAATATAAA
3558164 TATAATT
1 TATAATT
3558171 TGTAACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 17 0.85
17 1 0.05
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TATAATTATAATATAAA
Found at i:3558171 original size:11 final size:10
Alignment explanation
Indices: 3558132--3558170 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
3558122 AATTATTTTT
3558132 TATAATTAAA
1 TATAATTAAA
*
3558142 TATAAATATAA
1 TATAATTA-AA
3558153 TATAATTTAAA
1 TATAA-TTAAA
3558164 TATAATT
1 TATAATT
3558171 TGTAACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 9 0.36
11 14 0.56
12 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TATAATTAAA
Found at i:3566874 original size:61 final size:63
Alignment explanation
Indices: 3566774--3566923 Score: 187
Period size: 67 Copynumber: 2.3 Consensus size: 63
3566764 CTAACTTAAG
* * *
3566774 AAATGACCAAAACAAGAAAAAGAGAAGATATTCACC-ATTA-TTATGGTTTTCACATTAACTA
1 AAATTACCAAAACAATAAAAAGAGAAGATACTCACCTATTAGTTATGGTTTTCACATTAACTA
* * *
3566835 AAATTACCAAAACAATTAGAAGAGAAGATACTCATCATTATTATGGTTATGGTTTTCACATTAAC
1 AAATTACCAAAACAATAAAAAGAGAAGATACTCA-C-CTATTA--GTTATGGTTTTCACATTAAC
3566900 TA
62 TA
*
3566902 AAATTGCCAAAACAATAAAAAG
1 AAATTACCAAAACAATAAAAAG
3566924 TCGTTTTCAA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
61 29 0.39
62 1 0.01
64 4 0.05
67 40 0.54
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.27
Consensus pattern (63 bp):
AAATTACCAAAACAATAAAAAGAGAAGATACTCACCTATTAGTTATGGTTTTCACATTAACTA
Found at i:3570330 original size:2 final size:2
Alignment explanation
Indices: 3570323--3570348 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3570313 GGATGAAACT
3570323 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
3570349 CATCATTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3578584 original size:25 final size:25
Alignment explanation
Indices: 3578556--3578610 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
3578546 TAGTCGAATT
*
3578556 AATTGGTGCAATACCTTAAATTCAA
1 AATTAGTGCAATACCTTAAATTCAA
*
3578581 AATTATTGCAATACCTTAAATTCAA
1 AATTAGTGCAATACCTTAAATTCAA
3578606 AATTA
1 AATTA
3578611 TTCATAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.35
Consensus pattern (25 bp):
AATTAGTGCAATACCTTAAATTCAA
Found at i:3578611 original size:25 final size:25
Alignment explanation
Indices: 3578562--3578612 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
3578552 AATTAATTGG
3578562 TGCAATACCTTAAATTCAAAATTAT
1 TGCAATACCTTAAATTCAAAATTAT
3578587 TGCAATACCTTAAATTCAAAATTAT
1 TGCAATACCTTAAATTCAAAATTAT
3578612 T
1 T
3578613 CATAAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (25 bp):
TGCAATACCTTAAATTCAAAATTAT
Found at i:3578764 original size:16 final size:17
Alignment explanation
Indices: 3578745--3578777 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3578735 TTAAATATAA
3578745 AATTTTT-TAAAATTTT
1 AATTTTTATAAAATTTT
3578761 AATTTTTATAAAATTTT
1 AATTTTTATAAAATTTT
3578778 CAAAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AATTTTTATAAAATTTT
Found at i:3578767 original size:17 final size:17
Alignment explanation
Indices: 3578728--3578777 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
3578718 ATTTTTTCAT
* * *
3578728 ATTTTTTTTAAATATAA
1 ATTTTTTTAAAATTTTA
*
3578745 AATTTTTTAAAATTTTA
1 ATTTTTTTAAAATTTTA
*
3578762 ATTTTTATAAAATTTT
1 ATTTTTTTAAAATTTT
3578778 CAAAATTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTTTTAAAATTTTA
Found at i:3578770 original size:27 final size:27
Alignment explanation
Indices: 3578740--3578792 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
3578730 TTTTTTTAAA
*
3578740 TATAAAATTTTTTAAAATT-TTAATTTT
1 TATAAAA-TTTTCAAAATTATTAATTTT
3578767 TATAAAATTTTCAAAATTATTAATTT
1 TATAAAATTTTCAAAATTATTAATTT
3578793 GATTTATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (27 bp):
TATAAAATTTTCAAAATTATTAATTTT
Found at i:3579311 original size:12 final size:12
Alignment explanation
Indices: 3579294--3579319 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3579284 CACTACAGGC
3579294 TTTAGCGGCGTT
1 TTTAGCGGCGTT
3579306 TTTAGCGGCGTT
1 TTTAGCGGCGTT
3579318 TT
1 TT
3579320 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:3579418 original size:41 final size:42
Alignment explanation
Indices: 3579344--3579633 Score: 348
Period size: 41 Copynumber: 7.1 Consensus size: 42
3579334 CAAAAATTAT
* * ** *
3579344 AAAACACATAGCAATAGCGGCG-TTTTACCAAAAACGCCACTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTTAGGAAAAACGCCGCTA
* * *
3579386 AAAA-CAGAGCAATAGCGACG-TTTTAGTAAAAAACGCCGC-A
1 AAAACCAGAGCATTAGCGGCGCTTTTAG-GAAAAACGCCGCTA
** * **
3579426 AAAAATAGAGCATTAGCGGCGCTTCTA-TCAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTAGGAAAAACGCCGCTA
3579467 AAAACCAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTAGGAAAAACGCCGCTA
* *
3579508 AAAACCAAAGCATTAGCGGCGCTTCTA--ACAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTAGGA-AAAACGCCGCTA
3579549 AAAACCAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTAGGAAAAACGCCGCTA
3579590 AAAACCAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTAGGAAAAACGCCGCTA
3579631 AAA
1 AAA
3579634 GTCATATAAC
Statistics
Matches: 219, Mismatches: 20, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
40 35 0.16
41 175 0.80
42 9 0.04
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (42 bp):
AAAACCAGAGCATTAGCGGCGCTTTTAGGAAAAACGCCGCTA
Found at i:3579805 original size:7 final size:7
Alignment explanation
Indices: 3579790--3579843 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
3579780 TTAATTATCA
*
3579790 TTATAGT
1 TTATGGT
3579797 TTATGGT
1 TTATGGT
3579804 TTATGGT
1 TTATGGT
* *
3579811 TTAAGAT
1 TTATGGT
*
3579818 ATATGGT
1 TTATGGT
*
3579825 TTAAGGT
1 TTATGGT
*
3579832 TTAAGGT
1 TTATGGT
3579839 TTATG
1 TTATG
3579844 AGTTAACTAT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:3579866 original size:46 final size:46
Alignment explanation
Indices: 3579809--3579944 Score: 245
Period size: 46 Copynumber: 3.0 Consensus size: 46
3579799 ATGGTTTATG
*
3579809 GTTTAAGATATATGGTTTAAGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
*
3579855 GTTTAATATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
*
3579901 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTA
3579945 GTATTTGAAG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 86 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
Found at i:3579868 original size:25 final size:25
Alignment explanation
Indices: 3579830--3579914 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 25
3579820 ATGGTTTAAG
* *
3579830 GTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGAGTTAACTATA
* **
3579855 GTTTAATATATATG-GTT---TAGG
1 GTTTAAGATATATGAGTTAACTATA
* *
3579876 GTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGAGTTAACTATA
3579901 GTTTAAGATATATG
1 GTTTAAGATATATG
3579915 GTTTAGGGTT
Statistics
Matches: 44, Mismatches: 12, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
21 13 0.30
22 3 0.07
24 3 0.07
25 25 0.57
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (25 bp):
GTTTAAGATATATGAGTTAACTATA
Found at i:3580006 original size:14 final size:14
Alignment explanation
Indices: 3579967--3580010 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
3579957 TTATGATGAA
*
3579967 TTATGGGTTTAGGGA
1 TTATGGG-TTAGGGT
**
3579982 TTATGATTTAGGGT
1 TTATGGGTTAGGGT
3579996 TTATGGGTTAGGGT
1 TTATGGGTTAGGGT
3580010 T
1 T
3580011 GGAGTTTAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (14 bp):
TTATGGGTTAGGGT
Found at i:3580060 original size:7 final size:7
Alignment explanation
Indices: 3580050--3580099 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
3580040 AGGGTTAAGG
*
3580050 GTTTAGA
1 GTTTAGT
3580057 GTTTAGT
1 GTTTAGT
3580064 GTTTAGT
1 GTTTAGT
*
3580071 GTTTAGG
1 GTTTAGT
3580078 GTTTAAG-
1 GTTT-AGT
3580085 GTTTAAG-
1 GTTT-AGT
3580092 GTTTAGT
1 GTTTAGT
3580099 G
1 G
3580100 GCATTTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 2 0.05
7 35 0.90
8 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (7 bp):
GTTTAGT
Found at i:3580067 original size:14 final size:14
Alignment explanation
Indices: 3579973--3580097 Score: 69
Period size: 14 Copynumber: 8.9 Consensus size: 14
3579963 TGAATTATGG
*
3579973 GTTTAGGGATTATGA
1 GTTTAGGGTTTA-GA
3579988 -TTTAGGGTTTATG-
1 GTTTAGGGTTTA-GA
* *
3580001 GGTTAGGG-TTGGA
1 GTTTAGGGTTTAGA
* * *
3580014 GTTTAAGGTGTAAGG
1 GTTTAGGGT-TTAGA
* * *
3580029 GTTTGGGGTTAAGG
1 GTTTAGGGTTTAGA
*
3580043 GTTAAGGGTTTAGA
1 GTTTAGGGTTTAGA
* *
3580057 GTTTAGTGTTTAGT
1 GTTTAGGGTTTAGA
3580071 GTTTAGGGTTTA-A
1 GTTTAGGGTTTAGA
*
3580084 GGTTTAAGGTTTAG
1 -GTTTAGGGTTTAG
3580098 TGGCATTTTT
Statistics
Matches: 84, Mismatches: 20, Indels: 12
0.72 0.17 0.10
Matches are distributed among these distances:
12 1 0.01
13 8 0.10
14 66 0.79
15 9 0.11
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.42
Consensus pattern (14 bp):
GTTTAGGGTTTAGA
Found at i:3580095 original size:21 final size:21
Alignment explanation
Indices: 3579988--3580097 Score: 77
Period size: 21 Copynumber: 5.2 Consensus size: 21
3579978 GGGATTATGA
* *
3579988 TTTAGGGTTTATGGGTT-AGG
1 TTTAGGGTTTAAGGTTTAAGG
* *
3580008 GTT-GGAGTTTAAGGTGTAAGGG
1 TTTAGG-GTTTAAGGTTTAA-GG
* *
3580030 TTT-GGGGTTAAGGGTTAAGGG
1 TTTAGGGTTTAAGGTTTAA-GG
*
3580051 TTTAGAGTTT-AGTGTTT-AGTG
1 TTTAGGGTTTAAG-GTTTAAG-G
3580072 TTTAGGGTTTAAGGTTTAAGG
1 TTTAGGGTTTAAGGTTTAAGG
3580093 TTTAG
1 TTTAG
3580098 TGGCATTTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 15
0.72 0.12 0.15
Matches are distributed among these distances:
19 2 0.03
20 11 0.16
21 40 0.57
22 17 0.24
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (21 bp):
TTTAGGGTTTAAGGTTTAAGG
Found at i:3580393 original size:14 final size:14
Alignment explanation
Indices: 3580370--3580414 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
3580360 TTAATTATCA
3580370 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
3580384 TTAT-GATTTAGGGT
1 TTATAG-TTTAGGGT
*
3580398 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
3580412 TTA
1 TTA
3580415 AGGTGTAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:3580456 original size:29 final size:29
Alignment explanation
Indices: 3580424--3580482 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
3580414 AAGGTGTAGG
3580424 AATTACTAATTTACGGGTTACAATTATGT
1 AATTACTAATTTACGGGTTACAATTATGT
3580453 AATTACTAATTTACGGGTTACAATTATGT
1 AATTACTAATTTACGGGTTACAATTATGT
3580482 A
1 A
3580483 GTACTTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.41
Consensus pattern (29 bp):
AATTACTAATTTACGGGTTACAATTATGT
Found at i:3585107 original size:24 final size:24
Alignment explanation
Indices: 3585080--3585147 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
3585070 ATTATTATTG
* *
3585080 AAATATTCTTGTCCGTTTTATCAT
1 AAATATTATTGTCCGTTTTATCAC
*
3585104 AAATATTATTCTCCGTTTTATCAC
1 AAATATTATTGTCCGTTTTATCAC
*
3585128 AAATATTATCGTCCGTTTTA
1 AAATATTATTGTCCGTTTTA
3585148 CCGTTTAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (24 bp):
AAATATTATTGTCCGTTTTATCAC
Found at i:3585480 original size:9 final size:9
Alignment explanation
Indices: 3585468--3585588 Score: 118
Period size: 9 Copynumber: 13.6 Consensus size: 9
3585458 TATTTGATAT
*
3585468 CATAATTTA
1 CATAACTTA
3585477 CATAACTTA
1 CATAACTTA
* *
3585486 TATAACATA
1 CATAACTTA
*
3585495 TATAACTTA
1 CATAACTTA
3585504 CATAACTTA
1 CATAACTTA
* *
3585513 TATAACATA
1 CATAACTTA
3585522 CATAACTTA
1 CATAACTTA
* * *
3585531 TATAGCATA
1 CATAACTTA
3585540 CATAACTTA
1 CATAACTTA
*
3585549 TATAACTTA
1 CATAACTTA
* *
3585558 GATAA-ATA
1 CATAACTTA
*
3585566 TATAACTTA
1 CATAACTTA
3585575 CATAACTTA
1 CATAACTTA
3585584 CATAA
1 CATAA
3585589 TACTTAAATA
Statistics
Matches: 90, Mismatches: 21, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
8 6 0.07
9 84 0.93
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:3585490 original size:18 final size:18
Alignment explanation
Indices: 3585468--3585588 Score: 145
Period size: 18 Copynumber: 6.8 Consensus size: 18
3585458 TATTTGATAT
* *
3585468 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
3585486 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
3585504 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
* *
3585522 CATAACTTATATAGCATA
1 CATAACTTATATAACTTA
3585540 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
3585558 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
3585575 CATAACTTACATAA
1 CATAACTTATATAA
3585589 TACTTAAATA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
17 15 0.17
18 72 0.83
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:3585499 original size:27 final size:27
Alignment explanation
Indices: 3585464--3585588 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
3585454 AATATATTTG
* *
3585464 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACATATATAAC
*
3585492 ATATATAACTTACATAACTTATATAAC
1 ATATATAACTTACATAACATATATAAC
* * * *
3585519 ATACATAACTTATATAGCATACATAAC
1 ATATATAACTTACATAACATATATAAC
* *
3585546 TTATATAACTTAGATAA-ATATATAAC
1 ATATATAACTTACATAACATATATAAC
* *
3585572 TTACATAACTTACATAA
1 ATATATAACTTACATAA
3585589 TACTTAAATA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.27
27 57 0.68
28 4 0.05
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (27 bp):
ATATATAACTTACATAACATATATAAC
Found at i:3591439 original size:31 final size:31
Alignment explanation
Indices: 3591393--3591459 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
3591383 TGGTTGTATT
* *
3591393 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
3591424 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
3591455 TTTTA
1 TTTTA
3591460 ATACAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:3591559 original size:43 final size:43
Alignment explanation
Indices: 3591533--3591696 Score: 292
Period size: 43 Copynumber: 3.8 Consensus size: 43
3591523 GTAAAAAAAG
*
3591533 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCGCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
3591576 CGCCGCTAAAAGCCTTGACCTTTAGCGGGGCTTTTCCCGCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
3591619 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
3591662 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
3591697 TTTCCAATAA
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 117 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:3598344 original size:25 final size:26
Alignment explanation
Indices: 3598316--3598366 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3598306 CTTATTTTAT
*
3598316 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
3598341 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
3598367 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:3598359 original size:26 final size:24
Alignment explanation
Indices: 3598328--3598376 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
3598318 AATAAAAAAT
*
3598328 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
3598354 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
3598377 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:3598394 original size:19 final size:21
Alignment explanation
Indices: 3598355--3598400 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
3598345 TCAAATATAT
3598355 TTAAAAACATAAAAACAAATA
1 TTAAAAACATAAAAACAAATA
*
3598376 TTAAAAA-ATAAAAA-TAATA
1 TTAAAAACATAAAAACAAATA
3598395 TTAAAA
1 TTAAAA
3598401 TAATTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 10 0.42
20 7 0.29
21 7 0.29
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (21 bp):
TTAAAAACATAAAAACAAATA
Found at i:3600076 original size:16 final size:17
Alignment explanation
Indices: 3600051--3600083 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
3600041 AGCACTCTCG
3600051 CTACCACTAG-TCTCCA
1 CTACCACTAGCTCTCCA
*
3600067 CTACCTCTAGCTCTCCA
1 CTACCACTAGCTCTCCA
3600084 TCCGATTGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.21, C:0.45, G:0.06, T:0.27
Consensus pattern (17 bp):
CTACCACTAGCTCTCCA
Found at i:3600994 original size:15 final size:15
Alignment explanation
Indices: 3600964--3601007 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
3600954 AGTGAGGATT
3600964 TAAAAATTAAATATTA
1 TAAAAATTAAA-ATTA
3600980 TAAAAATTAAAATTA
1 TAAAAATTAAAATTA
*
3600995 -ATTAAATTAAAAT
1 TA-AAAATTAAAAT
3601008 ACATGAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 1 0.04
15 14 0.54
16 11 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
TAAAAATTAAAATTA
Found at i:3601000 original size:17 final size:17
Alignment explanation
Indices: 3600963--3601000 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
3600953 AAGTGAGGAT
3600963 TTAAAAATTAAATATTA
1 TTAAAAATTAAATATTA
3600980 -TAAAAATTAAA-ATTAA
1 TTAAAAATTAAATATT-A
3600996 TTAAA
1 TTAAA
3601001 TTAAAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TTAAAAATTAAATATTA
Found at i:3602992 original size:14 final size:14
Alignment explanation
Indices: 3602973--3603002 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3602963 AGATTATTTT
3602973 TGCATGGTGGAAAG
1 TGCATGGTGGAAAG
3602987 TGCATGGTGGAAAG
1 TGCATGGTGGAAAG
3603001 TG
1 TG
3603003 ATGATGCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.43, T:0.23
Consensus pattern (14 bp):
TGCATGGTGGAAAG
Found at i:3603508 original size:15 final size:15
Alignment explanation
Indices: 3603488--3603522 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
3603478 GGTAAGTTTG
3603488 ATATTTTTAAATTTA
1 ATATTTTTAAATTTA
3603503 ATA-TTTTAAATTTA
1 ATATTTTTAAATTTA
3603517 A-ATTTT
1 ATATTTT
3603523 ATTATATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 15 0.79
15 3 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTTTTAAATTTA
Found at i:3604527 original size:20 final size:19
Alignment explanation
Indices: 3604499--3604536 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 19
3604489 TCATTTTGAT
3604499 CTTTGAATATCTATTTTTTTA
1 CTTTGAATA-CT-TTTTTTTA
3604520 CTTT-AATACTTTTTTTT
1 CTTTGAATACTTTTTTTT
3604537 TCTCATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 4 0.24
21 4 0.24
ACGTcount: A:0.21, C:0.11, G:0.03, T:0.66
Consensus pattern (19 bp):
CTTTGAATACTTTTTTTTA
Found at i:3605002 original size:2 final size:2
Alignment explanation
Indices: 3604995--3605034 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
3604985 GAAATTATTA
3604995 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3605035 CAAACTTCGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3613206 original size:12 final size:12
Alignment explanation
Indices: 3613186--3613233 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
3613176 ATACATCATT
3613186 AACAACTAATAA
1 AACAACTAATAA
* *
3613198 AACAGCTAACAA
1 AACAACTAATAA
*
3613210 GAATAACTAATAA
1 -AACAACTAATAA
3613223 AACAACTAATA
1 AACAACTAATA
3613234 TGAGCAGCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
12 20 0.69
13 9 0.31
ACGTcount: A:0.62, C:0.17, G:0.04, T:0.17
Consensus pattern (12 bp):
AACAACTAATAA
Found at i:3621102 original size:30 final size:30
Alignment explanation
Indices: 3621041--3621103 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
3621031 TTGACTCCTT
* * *
3621041 AAAATTATAAAAATTCAATTTAATTATTTA
1 AAAATTATAAAAATTCAATATAATAAATTA
*
3621071 AAAATTATAAAAATTAGAATATAA-AAATTA
1 AAAATTATAAAAATT-CAATATAATAAATTA
3621101 AAA
1 AAA
3621104 TTTCATTAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (30 bp):
AAAATTATAAAAATTCAATATAATAAATTA
Found at i:3626615 original size:19 final size:19
Alignment explanation
Indices: 3626568--3626607 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
3626558 ATAAACGAGA
3626568 TAAAATAAAATCTAACTTC
1 TAAAATAAAATCTAACTTC
3626587 TAAAATAAAATCTAACTTC
1 TAAAATAAAATCTAACTTC
3626606 TA
1 TA
3626608 GTATAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAATAAAATCTAACTTC
Found at i:3629691 original size:16 final size:17
Alignment explanation
Indices: 3629660--3629692 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3629650 TTCATAAGTA
3629660 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
3629677 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
3629693 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:3630297 original size:46 final size:46
Alignment explanation
Indices: 3629978--3630297 Score: 399
Period size: 46 Copynumber: 7.0 Consensus size: 46
3629968 TTTGACATGA
* * * * *
3629978 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * * * *
3630024 TGCCATAGTATCTTTTAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *** *
3630070 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
3630116 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
3630162 TGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
3630208 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * *
3630254 CGCCATGATATCTTTCAACCATGGTCTTACACATATCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
3630298 AGAGTACACT
Statistics
Matches: 249, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 245 0.98
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:3633179 original size:53 final size:53
Alignment explanation
Indices: 3633098--3633248 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
3633088 CTTACACGGT
* *
3633098 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
3633153 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
3633206 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
3633249 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:3635320 original size:16 final size:16
Alignment explanation
Indices: 3635301--3635331 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3635291 CTTCTTCACT
3635301 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
3635317 TACTTACTTACTTAA
1 TACTCACTTACTTAA
3635332 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:3635337 original size:20 final size:20
Alignment explanation
Indices: 3635298--3635337 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
3635288 AAACTTCTTC
* *
3635298 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
3635318 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
3635338 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:3635595 original size:49 final size:49
Alignment explanation
Indices: 3635523--3635663 Score: 237
Period size: 49 Copynumber: 2.9 Consensus size: 49
3635513 ACGCGGGTAC
3635523 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGAAA
1 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGAAA
3635572 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGAAA
1 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGAAA
* * * * *
3635621 CTTACCATGGCCATGTCTCGACATGGTCTTACATGGTATCCTT
1 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT
3635664 GCCTTAAGAA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 87 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (49 bp):
CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGAAA
Found at i:3635774 original size:55 final size:52
Alignment explanation
Indices: 3635526--3635826 Score: 165
Period size: 49 Copynumber: 5.8 Consensus size: 52
3635516 CGGGTACCTT
* * * * * *
3635526 ACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TTGA-AACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTAAGAACTC
* * * * * *
3635575 ACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TTGA-AACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTAAGAACTC
*
3635624 ACC-ATGGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAAGAACTC
1 ACCAAT-GCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTAAGAACTC
* * * * * * *
3635677 ACCGATGTCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAATTT
1 ACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTA-AG-AACTC
* * *
3635732 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTT-AGAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTAAG-AA-CTC
* * * *
3635786 ACCAGTTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCA-ATGCCATGTCTTGACATGGTCTTACAT-GTATCCTT
3635827 AAACCCTAAT
Statistics
Matches: 209, Mismatches: 29, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
48 1 0.00
49 82 0.39
52 5 0.02
53 43 0.21
54 10 0.05
55 65 0.31
56 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (52 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTAAGAACTC
Found at i:3637623 original size:7 final size:7
Alignment explanation
Indices: 3637531--3637624 Score: 59
Period size: 7 Copynumber: 13.1 Consensus size: 7
3637521 GATATTTTTT
*
3637531 ATATAAA
1 ATATATA
3637538 ATATATA
1 ATATATA
*
3637545 TTATATA
1 ATATATA
*
3637552 TTATATTA
1 ATATA-TA
*
3637560 A-CT-TA
1 ATATATA
*
3637565 ATATTTA
1 ATATATA
3637572 AGTAT-TA
1 A-TATATA
3637579 ATATATA
1 ATATATA
*
3637586 ATATATT
1 ATATATA
*
3637593 ATATTATT
1 ATA-TATA
3637601 ATATATA
1 ATATATA
3637608 TATAATATA
1 -AT-ATATA
3637617 ATATATA
1 ATATATA
3637624 A
1 A
3637625 AACATAAAGT
Statistics
Matches: 72, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.04
6 4 0.06
7 44 0.61
8 16 0.22
9 5 0.07
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (7 bp):
ATATATA
Found at i:3638779 original size:22 final size:22
Alignment explanation
Indices: 3638751--3638807 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
3638741 TAGCATGTTA
3638751 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTTTAGCAC-TCT
* *
3638774 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACTCT
3638795 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
3638808 CGTTTGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.42
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACTCT
Found at i:3642289 original size:23 final size:23
Alignment explanation
Indices: 3642207--3642293 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
3642197 CCTGATCAGT
*
3642207 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
3642229 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
3642249 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
3642272 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
3642294 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:3642744 original size:16 final size:17
Alignment explanation
Indices: 3642707--3642744 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
3642697 ACCCTAATTC
3642707 TTCCTT-TTTCTTTTCT
1 TTCCTTCTTTCTTTTCT
3642723 TT-CTTCTTTC-TTTCT
1 TTCCTTCTTTCTTTTCT
3642738 TTCCTTC
1 TTCCTTC
3642745 CCCTGCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCCTTCTTTCTTTTCT
Found at i:3647757 original size:46 final size:46
Alignment explanation
Indices: 3647707--3647835 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
3647697 TGGTTGAGCA
*
3647707 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
3647753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
3647799 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
3647836 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:3655275 original size:46 final size:46
Alignment explanation
Indices: 3655225--3655400 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
3655215 TGGTTGAGCA
3655225 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
3655271 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
3655316 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
3655364 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
3655401 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:3655381 original size:93 final size:93
Alignment explanation
Indices: 3655222--3655393 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
3655212 GGATGGTTGA
* *
3655222 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
3655287 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
3655315 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
3655380 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
3655394 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:3659477 original size:23 final size:22
Alignment explanation
Indices: 3659374--3659481 Score: 123
Period size: 21 Copynumber: 5.0 Consensus size: 22
3659364 CCTGATCAGT
*
3659374 ATACGACACATAAAGTGCCT-A
1 ATACGACACATGAAGTGCCTGA
* *
3659395 AAACGACACACGAAGTGCCTG-
1 ATACGACACATGAAGTGCCTGA
*
3659416 ATACGACACATGAGGTGCCTG-
1 ATACGACACATGAAGTGCCTGA
* *
3659437 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATGAAGTGCCTG-A
*
3659460 ATACGACACATAAAGTGCCTGA
1 ATACGACACATGAAGTGCCTGA
3659482 TCGATAAAGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
21 55 0.74
22 1 0.01
23 18 0.24
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (22 bp):
ATACGACACATGAAGTGCCTGA
Found at i:3659479 original size:44 final size:42
Alignment explanation
Indices: 3659374--3659482 Score: 155
Period size: 42 Copynumber: 2.5 Consensus size: 42
3659364 CCTGATCAGT
* *
3659374 ATACGACACATAAAGTGCCTAAAACGACACACGAAGTGCCTG
1 ATACGACACATAAAGTGCCTGATACGACACACGAAGTGCCTG
* * *
3659416 ATACGACACATGAGGTGCCTGATACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTGATACGACACACGAAGTGCCTG
3659458 AAATACGACACATAAAGTGCCTGAT
1 --ATACGACACATAAAGTGCCTGAT
3659483 CGATAAAGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 37 0.64
44 21 0.36
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.17
Consensus pattern (42 bp):
ATACGACACATAAAGTGCCTGATACGACACACGAAGTGCCTG
Found at i:3659932 original size:16 final size:17
Alignment explanation
Indices: 3659895--3659932 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
3659885 ACCCTAATTC
3659895 TTCCTT-TTTCTTTTCT
1 TTCCTTCTTTCTTTTCT
3659911 TT-CTTCTTTC-TTTCT
1 TTCCTTCTTTCTTTTCT
3659926 TTCCTTC
1 TTCCTTC
3659933 CCCTGCGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCCTTCTTTCTTTTCT
Found at i:3661848 original size:8 final size:8
Alignment explanation
Indices: 3661835--3661878 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
3661825 TTCTAGTTCT
3661835 TTTATATA
1 TTTATATA
*
3661843 TTTATAAA
1 TTTATATA
3661851 TTTATATA
1 TTTATATA
* *
3661859 TTAATATTT
1 TTTATA-TA
3661868 TTTATATA
1 TTTATATA
3661876 TTT
1 TTT
3661879 CAAAATATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
8 23 0.79
9 6 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTATATA
Found at i:3662092 original size:22 final size:21
Alignment explanation
Indices: 3662067--3662110 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
3662057 AATAATAACT
*
3662067 TAAAAATGAAATTTTATAAAAA
1 TAAAAATAAAATTTT-TAAAAA
*
3662089 TAAATATAAAATTTTTAAAAA
1 TAAAAATAAAATTTTTAAAAA
3662110 T
1 T
3662111 TATATCAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAAAATAAAATTTTTAAAAA
Found at i:3665035 original size:14 final size:14
Alignment explanation
Indices: 3665016--3665042 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3665006 GTATCTAAGA
3665016 AAAAAAAAAAAACG
1 AAAAAAAAAAAACG
3665030 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
3665043 CTCTTTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAACG
Found at i:3665472 original size:33 final size:33
Alignment explanation
Indices: 3665430--3665493 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
3665420 TAAGTGATAC
*
3665430 TAAGCTTGAAATTTTACCTTGCGTGTAGGGGGA
1 TAAGCTTGAAATCTTACCTTGCGTGTAGGGGGA
*
3665463 TAAGCTTGAAATCTTACCTTGCTTGTAGGGG
1 TAAGCTTGAAATCTTACCTTGCGTGTAGGGG
3665494 ATGCAAGTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.34
Consensus pattern (33 bp):
TAAGCTTGAAATCTTACCTTGCGTGTAGGGGGA
Found at i:3666161 original size:22 final size:24
Alignment explanation
Indices: 3666130--3666186 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 24
3666120 ATATCTAATA
* *
3666130 ATTTAAATATTAATTTTTATTT-T
1 ATTTATATATTAATATTTATTTAT
*
3666153 ATTT-TATATAAATATTTATTTAT
1 ATTTATATATTAATATTTATTTAT
3666176 ATTTATATATT
1 ATTTATATATT
3666187 TGCTTACTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 14 0.50
23 9 0.32
24 5 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTTATATATTAATATTTATTTAT
Found at i:3674286 original size:100 final size:100
Alignment explanation
Indices: 3674108--3674292 Score: 275
Period size: 100 Copynumber: 1.9 Consensus size: 100
3674098 TCCTTCTCAG
* * *
3674108 ACAAATTTTGTTAAATTATATTTATTTTAAAACTTAATAAAACAAAAGTAATCAAGAACTAAAAA
1 ACAAATTTTGTTAAACTATATCTATTTTAAAACTTAATAAAACAAAAGTAATCAAAAACTAAAAA
3674173 AATAAATTAGAAAATATACTTTAATCAAATTTCAA
66 AATAAATTAGAAAATATACTTTAATCAAATTTCAA
* *
3674208 ACAAATTTTGTTAAACTATATCTATTTTAAAACTTAATAAAACAAAAGGT-ATTAAAATACT-AC
1 ACAAATTTTGTTAAACTATATCTATTTTAAAACTTAATAAAACAAAA-GTAATCAAAA-ACTAAA
* *
3674271 AAATTAAATTGGAAAATATACT
64 AAAATAAATTAGAAAATATACT
3674293 CTCTCTTTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
100 71 0.93
101 5 0.07
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (100 bp):
ACAAATTTTGTTAAACTATATCTATTTTAAAACTTAATAAAACAAAAGTAATCAAAAACTAAAAA
AATAAATTAGAAAATATACTTTAATCAAATTTCAA
Found at i:3675858 original size:19 final size:21
Alignment explanation
Indices: 3675821--3675865 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
3675811 ATATTAGTAA
3675821 TTTTATTTTAAATTTTAATAT
1 TTTTATTTTAAATTTTAATAT
*
3675842 TTTTA-TTTAAA-TTTAATTT
1 TTTTATTTTAAATTTTAATAT
3675861 TTTTA
1 TTTTA
3675866 AGATAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.52
20 6 0.26
21 5 0.22
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTATTTTAAATTTTAATAT
Found at i:3676167 original size:15 final size:15
Alignment explanation
Indices: 3676149--3676178 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3676139 ATAAATTTTT
3676149 TTTAAATAATTTTAA
1 TTTAAATAATTTTAA
*
3676164 TTTAAATATTTTTAA
1 TTTAAATAATTTTAA
3676179 ACGAATTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAAATAATTTTAA
Found at i:3687270 original size:22 final size:22
Alignment explanation
Indices: 3687236--3687299 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
3687226 TCAACATTTT
*
3687236 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
3687258 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
3687279 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
3687300 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:3687293 original size:15 final size:16
Alignment explanation
Indices: 3687273--3687304 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
3687263 ATATATAATA
3687273 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
3687288 ATATAAAAATTACATT
1 ATATAAAAATTACATT
3687304 A
1 A
3687305 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:3687606 original size:113 final size:113
Alignment explanation
Indices: 3687362--3687804 Score: 676
Period size: 113 Copynumber: 3.9 Consensus size: 113
3687352 ATACTAACAC
* * * *
3687362 AAAATAACTATAAAATTGTTTTTTTAAATACATTACTAAAAAGAAAAATCACAATACACTAATAC
1 AAAATAGCTATAAAAATATTTTTTTAAATATATTACT---AA-AAAAATCACAATACACTAAT--
3687427 ACACTAAACCACTAAACACTAACAA--TAT-TAACCTAATCTTAAATTACTAAT
60 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
3687478 AAAATAGCTAAAAAAATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTA
1 AAAATAGCTATAAAAATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTA
* * *
3687543 AACCACTAAACATTAACAATTTATATAACCCAACCTTAAATTACTAAT
66 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* * *
3687591 AAAATAGCTATAAAAATATTTTTTTTAAATATATTGCTAAAAAAATTACAATACACTAACACACT
1 AAAATAGCTATAAAAATA-TTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACT
*
3687656 AAACCACTAAACACTAACAATTTATATAACCTAATATTAAATTACTAAT
65 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
3687705 AAAATAGCTATAAAATTATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTA
1 AAAATAGCTATAAAAATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTA
*
3687770 AACTACTAAACACTAACAATTTATATAACCTAATC
66 AACCACTAAACACTAACAATTTATATAACCTAATC
3687805 AACTATAAAA
Statistics
Matches: 301, Mismatches: 22, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
110 24 0.08
112 23 0.08
113 117 0.39
114 105 0.35
116 32 0.11
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.31
Consensus pattern (113 bp):
AAAATAGCTATAAAAATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTA
AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:3687710 original size:227 final size:227
Alignment explanation
Indices: 3687362--3687799 Score: 697
Period size: 227 Copynumber: 1.9 Consensus size: 227
3687352 ATACTAACAC
3687362 AAAATAACTATAAAATTGTTTTTTTAAATACATTACTAAAAAGAAAAATCACAATACACTAATAC
1 AAAATAACTATAAAATTGTTTTTTTAAATACATTACT--AAAGAAAAATCACAATACACTAATAC
*
3687427 ACACTAAACCACTAAACACTAACAATATTAACCTAATCTTAAATTACTAATAAAATAGCTAAAAA
64 ACACTAAACCACTAAACACTAACAATATTAACCTAATATTAAATTACTAATAAAATAGCTAAAAA
*
3687492 AATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACATT
129 AATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACT
3687557 AACAATTTATATAACCCAACCTTAAATTACTAAT
194 AACAATTTATATAACCCAACCTTAAATTACTAAT
* * * *
3687591 AAAATAGCTATAAAAATAT-TTTTTTTAAATATATTGCT-AA-AAAAATTACAATACACT-A-AC
1 AAAATAACTAT-AAAAT-TGTTTTTTTAAATACATTACTAAAGAAAAATCACAATACACTAATAC
*
3687651 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATATTAAATTACTAATAAAATAGCTAT
64 ACACTAAACCACTAAACACTAACAA--TAT-TAACCTAATATTAAATTACTAATAAAATAGCTAA
* *
3687716 AAAATTATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTACTAAAC
126 AAAAATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAAC
3687781 ACTAACAATTTATATAACC
191 ACTAACAATTTATATAACC
3687800 TAATCAACTA
Statistics
Matches: 195, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
224 27 0.14
225 1 0.01
226 19 0.10
227 115 0.59
229 10 0.05
230 22 0.11
231 1 0.01
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (227 bp):
AAAATAACTATAAAATTGTTTTTTTAAATACATTACTAAAGAAAAATCACAATACACTAATACAC
ACTAAACCACTAAACACTAACAATATTAACCTAATATTAAATTACTAATAAAATAGCTAAAAAAA
TATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAA
CAATTTATATAACCCAACCTTAAATTACTAAT
Found at i:3687924 original size:19 final size:20
Alignment explanation
Indices: 3687899--3687943 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
3687889 CTAATCCCAT
3687899 AAATTATTAA-AAAA-ACAAA
1 AAATTA-TAACAAAATACAAA
*
3687918 TAATTATAACAAAATACAAA
1 AAATTATAACAAAATACAAA
3687938 AAATTA
1 AAATTA
3687944 ATAATTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 3 0.14
19 9 0.41
20 10 0.45
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATTATAACAAAATACAAA
Found at i:3688098 original size:16 final size:16
Alignment explanation
Indices: 3688077--3688107 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3688067 ACCCTTTTTT
*
3688077 TTCTTCTTCTTCTTCC
1 TTCTTCTTCTCCTTCC
3688093 TTCTTCTTCTCCTTC
1 TTCTTCTTCTCCTTC
3688108 TCCTTTCTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTCTTCTCCTTCC
Found at i:3688115 original size:16 final size:18
Alignment explanation
Indices: 3688075--3688113 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
3688065 TTACCCTTTT
*
3688075 TTTTCTTCTTCTTCTTCC
1 TTTTCTTCTCCTTCTTCC
3688093 TTCTTCTTCTCCTTC-TCC
1 TT-TTCTTCTCCTTCTTCC
3688111 TTT
1 TTT
3688114 CTCTACTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 7 0.37
19 11 0.58
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTCTTCTCCTTCTTCC
Found at i:3691695 original size:21 final size:20
Alignment explanation
Indices: 3691674--3691713 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3691664 ATTATTTTTA
3691674 AAAAATTA-TAAATATAATTT
1 AAAAATTACTAAAT-TAATTT
*
3691694 AAATATTACTAAATTAATTT
1 AAAAATTACTAAATTAATTT
3691714 TTAAACCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAAATTACTAAATTAATTT
Found at i:3698113 original size:23 final size:25
Alignment explanation
Indices: 3698061--3698113 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
3698051 TAAAATATTG
*
3698061 AAAATTAAACATAACTAAAAAGATA
1 AAAATTAAACATAACTAAAAAAATA
*
3698086 AAAATTAAA-TTAA-TAAAAAAATA
1 AAAATTAAACATAACTAAAAAAATA
*
3698109 TAAAT
1 AAAAT
3698114 GTTAATAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 13 0.52
24 3 0.12
25 9 0.36
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (25 bp):
AAAATTAAACATAACTAAAAAAATA
Found at i:3708913 original size:4 final size:4
Alignment explanation
Indices: 3708904--3708975 Score: 54
Period size: 4 Copynumber: 17.5 Consensus size: 4
3708894 TTAAAAAAAC
* ** * * * **
3708904 GAAA GAAA GAAA GAAA GAAA GATA GAAA GAGT TACA GAGA GCAAA CGTGA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA
3708954 GAAA GAAA GAAA GAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GA
3708976 GAAAAGGGAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
4 48 0.92
5 3 0.06
6 1 0.02
ACGTcount: A:0.62, C:0.04, G:0.28, T:0.06
Consensus pattern (4 bp):
GAAA
Found at i:3713899 original size:28 final size:27
Alignment explanation
Indices: 3713843--3713897 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
3713833 CCGCATGGTA
3713843 TAAAATACAATGGAACAATCCAGGGTT
1 TAAAATACAATGGAACAATCCAGGGTT
*
3713870 TAAAATATATATGGAA-AA-CCGAGGGTT
1 TAAAATACA-ATGGAACAATCC-AGGGTT
3713897 T
1 T
3713898 TAGAGGAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 2 0.08
27 17 0.68
28 6 0.24
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAATACAATGGAACAATCCAGGGTT
Found at i:3716355 original size:23 final size:23
Alignment explanation
Indices: 3716304--3716356 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
3716294 TTAATCACTA
*
3716304 TCAAATTTAATTTTTATAATTAAT
1 TCAAATTTAATTTATATAATT-AT
3716328 T--AATTATAATTTATATAATT-T
1 TCAAATT-TAATTTATATAATTAT
3716349 TCAAATTT
1 TCAAATTT
3716357 TGAAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 17 0.68
24 1 0.04
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TCAAATTTAATTTATATAATTAT
Found at i:3728629 original size:20 final size:20
Alignment explanation
Indices: 3728600--3728638 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
3728590 TTAAAACTTC
3728600 AAAAAAGTAT-AAAATTATT
1 AAAAAAGTATAAAAATTATT
3728619 AAAAGAAGTATAAAAATTAT
1 AAAA-AAGTATAAAAATTAT
3728639 AATTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 6 0.33
21 8 0.44
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (20 bp):
AAAAAAGTATAAAAATTATT
Found at i:3738695 original size:22 final size:21
Alignment explanation
Indices: 3738664--3738714 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
3738654 TTATTGAAAT
3738664 CTAATTGAA-TTCAGAATTGAA
1 CTAATTGAATTTCA-AATTGAA
3738685 CTAATTTGAATTTCAAATTGAGA
1 CTAA-TTGAATTTCAAATTGA-A
*
3738708 GTAATTG
1 CTAATTG
3738715 TTTTTACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 4 0.15
22 14 0.54
23 8 0.31
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (21 bp):
CTAATTGAATTTCAAATTGAA
Found at i:3738713 original size:23 final size:22
Alignment explanation
Indices: 3738664--3738705 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
3738654 TTATTGAAAT
3738664 CTAA-TTGAATTCAGAATTGAA
1 CTAATTTGAATTCAGAATTGAA
3738685 CTAATTTGAATTTCA-AATTGA
1 CTAATTTGAA-TTCAGAATTGA
3738706 GAGTAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (22 bp):
CTAATTTGAATTCAGAATTGAA
Found at i:3739368 original size:22 final size:22
Alignment explanation
Indices: 3739340--3739383 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
3739330 TCTCTGAAGC
3739340 CCCTTTCTTTTTCCTGAATGAA
1 CCCTTTCTTTTTCCTGAATGAA
3739362 CCCTTTCTTTTTCCTGAATGAA
1 CCCTTTCTTTTTCCTGAATGAA
3739384 TCTTCAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45
Consensus pattern (22 bp):
CCCTTTCTTTTTCCTGAATGAA
Found at i:3742191 original size:20 final size:21
Alignment explanation
Indices: 3742156--3742197 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
3742146 CATCTTGAAA
3742156 AAATTTAAATGAAAATT-TTG
1 AAATTTAAATGAAAATTATTG
3742176 AAATTTAGAATG-AAATTATTG
1 AAATTTA-AATGAAAATTATTG
3742197 A
1 A
3742198 TGTGGCATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (21 bp):
AAATTTAAATGAAAATTATTG
Found at i:3749234 original size:23 final size:25
Alignment explanation
Indices: 3749189--3749240 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
3749179 TTTAAATGTC
**
3749189 TTTTAAGAATTTTATAATTATA-TA
1 TTTTAAGAATTTTATAAAAATATTA
3749213 TTTT-AGAATTTTATAAAAATATTA
1 TTTTAAGAATTTTATAAAAATATTA
3749237 TTTT
1 TTTT
3749241 TTAAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTTTAAGAATTTTATAAAAATATTA
Found at i:3754083 original size:17 final size:17
Alignment explanation
Indices: 3754063--3754096 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3754053 AAATAGATTT
3754063 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
3754080 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
3754097 ACCTAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:3754469 original size:13 final size:13
Alignment explanation
Indices: 3754451--3754475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3754441 TGTAACCAGA
3754451 AACATGTTTCATG
1 AACATGTTTCATG
3754464 AACATGTTTCAT
1 AACATGTTTCAT
3754476 TCAAGCTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
AACATGTTTCATG
Found at i:3757883 original size:31 final size:32
Alignment explanation
Indices: 3757845--3757905 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
3757835 AAAGTTGTTG
*
3757845 CTCTTTTTTTATTATTAT-TATTATTTTAGGA
1 CTCTTTTTTCATTATTATCTATTATTTTAGGA
*
3757876 CTCTTTTTTCATTGTTATGCTATTATTTTA
1 CTCTTTTTTCATTATTAT-CTATTATTTTA
3757906 CTATTCGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 16 0.62
33 10 0.38
ACGTcount: A:0.20, C:0.10, G:0.07, T:0.64
Consensus pattern (32 bp):
CTCTTTTTTCATTATTATCTATTATTTTAGGA
Found at i:3764253 original size:22 final size:21
Alignment explanation
Indices: 3764207--3764254 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
3764197 TTATACATAA
*
3764207 ATAAATTTAAAAAATATATAT
1 ATAAATTTAAAAAATATATAC
3764228 ATAAATTTAAGAAAATACT-TAC
1 ATAAATTTAA-AAAATA-TATAC
3764250 ATAAA
1 ATAAA
3764255 ATAATACGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
22 13 0.54
23 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAAATTTAAAAAATATATAC
Found at i:3768074 original size:12 final size:12
Alignment explanation
Indices: 3768054--3768107 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
3768044 TCTTAGCTAA
3768054 TTGCTCTTGCAT
1 TTGCTCTTGCAT
*
3768066 TTGCACTTGCAT
1 TTGCTCTTGCAT
* *
3768078 CTGTTCTTGCAT
1 TTGCTCTTGCAT
*
3768090 TT-CTTTCTGCAT
1 TTGCTCT-TGCAT
3768102 TTGCTC
1 TTGCTC
3768108 CAATTTTTCC
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
11 2 0.06
12 28 0.88
13 2 0.06
ACGTcount: A:0.09, C:0.26, G:0.15, T:0.50
Consensus pattern (12 bp):
TTGCTCTTGCAT
Found at i:3771700 original size:62 final size:62
Alignment explanation
Indices: 3771630--3771754 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
3771620 TATTGAGTAA
3771630 ACACGAGAATTGAAAACATAATGCAATTACAAGGGAAAAAAATAGTTATATGTATGAACAAT
1 ACACGAGAATTGAAAACATAATGCAATTACAAGGGAAAAAAATAGTTATATGTATGAACAAT
*
3771692 ACACGAGAATTGAAAACATAATGCAATTAGAAGGGAAAAAAATAGTTATATGTATGAACAAT
1 ACACGAGAATTGAAAACATAATGCAATTACAAGGGAAAAAAATAGTTATATGTATGAACAAT
3771754 A
1 A
3771755 ATATGTGAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.52, C:0.09, G:0.17, T:0.22
Consensus pattern (62 bp):
ACACGAGAATTGAAAACATAATGCAATTACAAGGGAAAAAAATAGTTATATGTATGAACAAT
Found at i:3772462 original size:96 final size:96
Alignment explanation
Indices: 3772354--3772549 Score: 245
Period size: 96 Copynumber: 2.0 Consensus size: 96
3772344 AATTTTAAGG
* * ** *
3772354 TTTTAAGGAAAAAAATTAAAT-AATTAAGGTTTAGTGTTTGTTAATTAAATTAATTACT-AATTT
1 TTTTAAGG-AAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA-TAAATTT
* * *
3772417 TAAAAAATTAGATTATGG-TTTAGTGTTTATGGT
64 TAAAAAAATAGATTA-GGATTTAGGGTTTAGGGT
* *
3772450 TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTTAGTAAATTAATTATAAATTTTA
1 TTTTAAGGAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTA
3772515 AAAAAATAGATTAGGATTTTAGGGTTTAGGGT
66 AAAAAATAGATTAGGA-TTTAGGGTTTAGGGT
3772547 TTT
1 TTT
3772550 AGGATATTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
95 14 0.16
96 56 0.65
97 16 0.19
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (96 bp):
TTTTAAGGAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTA
AAAAAATAGATTAGGATTTAGGGTTTAGGGT
Found at i:3772993 original size:126 final size:126
Alignment explanation
Indices: 3772639--3773176 Score: 785
Period size: 126 Copynumber: 4.3 Consensus size: 126
3772629 ACAAACTTCT
*
3772639 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
3772704 ATAGTGTCAAAAACGGTTCAAGCAGGATGCATTGTCAAG-AAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTC-AGCAAAAGTACTGAAAGAAGCTCCC
** * *
3772765 ACGTGGACAATCTTTTGCTACAGTAGTATCTG-AAAAATAATTTTGAGAAGACGTGACTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
3772829 ATAGTGTAAAAAACGCTTCAAACAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
3772890 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAAAACGTGTCTGCGTAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
3772955 ATAGTGGT-AAAAACGCTTCAAGTAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * ** ***
3773016 ACGTGGATGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGTTGTGTCTGTATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
3773081 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
3773142 ACGTGGACACTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAA
3773177 TAACTTGGGC
Statistics
Matches: 371, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
124 2 0.01
125 113 0.30
126 254 0.68
127 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:3777619 original size:38 final size:41
Alignment explanation
Indices: 3777569--3777734 Score: 158
Period size: 46 Copynumber: 3.9 Consensus size: 41
3777559 CTGATATGAA
3777569 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-T-G
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAG
*
3777608 -TGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT-AG
* *
3777653 ATGTGTAATACCATGGTTGAAAGATACCATGGCAACGTGACATGAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CAT-AG
* ** *
3777699 AAGAATGAGACCATGGTTGAAAGATACCATGGCAAC
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
3777735 ATGACAGAAA
Statistics
Matches: 106, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
38 35 0.33
43 1 0.01
45 1 0.01
46 68 0.64
50 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (41 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAG
Found at i:3777777 original size:46 final size:47
Alignment explanation
Indices: 3777611--3777778 Score: 207
Period size: 46 Copynumber: 3.6 Consensus size: 47
3777601 CAACCTGTGT
* * * * *
3777611 GTAAGACCATGGTTGAAAGATACCATGGAAACCTGATATG-AGATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGA
* *
3777657 GTAATACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-GA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGA
* *
3777703 ATGAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGA
* * *
3777749 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
3777779 TCACGTCAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
45 5 0.05
46 98 0.93
47 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (47 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGA
Found at i:3778895 original size:46 final size:46
Alignment explanation
Indices: 3778787--3779201 Score: 542
Period size: 46 Copynumber: 9.0 Consensus size: 46
3778777 TTTGACATGA
* * * ** * *
3778787 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA---TTTCATATCAGGT
** * * *
3778836 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** *** *
3778882 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** *** *
3778928 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
3778974 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
3779020 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
3779066 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
3779112 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
3779158 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
3779202 AGAGCACACT
Statistics
Matches: 343, Mismatches: 23, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
46 313 0.91
49 30 0.09
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:3781373 original size:18 final size:20
Alignment explanation
Indices: 3781358--3781394 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3781348 TAATAATAAA
*
3781358 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
3781378 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
3781395 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Done.