Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 113 of 345
Found at i:30392199 original size:17 final size:17
Alignment explanation
Indices: 30392156--30392247 Score: 68
Period size: 17 Copynumber: 5.3 Consensus size: 17
30392146 ATTGAGTTTA
30392156 TTATTATTATTATTATTAT
1 TTATT-TTATT-TTATTAT
30392175 TTATTTTATTTTATT-T
1 TTATTTTATTTTATTAT
*
30392191 TTATCTTTATTTTTAGT-T
1 TTAT-TTTA-TTTTATTAT
*
30392209 TTGTTTTAGTTGTT-TTAT
1 TTATTTTA-TT-TTATTAT
30392227 TTA-TTTA-TTTATTTAT
1 TTATTTTATTTTA-TTAT
30392243 TTATT
1 TTATT
30392248 CTTCTCTTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
14 2 0.03
15 1 0.02
16 12 0.20
17 21 0.34
18 20 0.33
19 5 0.08
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (17 bp):
TTATTTTATTTTATTAT
Found at i:30392245 original size:4 final size:4
Alignment explanation
Indices: 30392222--30392247 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
30392212 TTTTAGTTGT
30392222 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
30392248 CTTCTCTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:30393235 original size:11 final size:11
Alignment explanation
Indices: 30393219--30393255 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
30393209 CATTCAGTCC
30393219 AAAAAAAA-AG
1 AAAAAAAAGAG
*
30393229 -AAAAAAAGGG
1 AAAAAAAAGAG
30393239 AAAAAAAAGAG
1 AAAAAAAAGAG
30393250 AAAAAA
1 AAAAAA
30393256 TTAATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.30
10 1 0.04
11 15 0.65
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:30396216 original size:12 final size:12
Alignment explanation
Indices: 30396179--30396209 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30396169 TATTTTTCTT
*
30396179 TTATTATATTTA
1 TTATTATATCTA
30396191 TTATTATATCTA
1 TTATTATATCTA
30396203 TTATTAT
1 TTATTAT
30396210 TACTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATTATATCTA
Found at i:30399936 original size:19 final size:19
Alignment explanation
Indices: 30399912--30399958 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
30399902 AATGCCTCTT
*
30399912 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
30399931 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
30399950 TATGCATTA
1 TTTGCATTA
30399959 AATTTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:30400301 original size:18 final size:19
Alignment explanation
Indices: 30400280--30400315 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
30400270 GTGCCGCAGC
30400280 AGCCTCCAGC-GCCGTACA
1 AGCCTCCAGCGGCCGTACA
30400298 AGCCTCCAGCGGCCGTAC
1 AGCCTCCAGCGGCCGTAC
30400316 CACCTCCGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.19, C:0.44, G:0.25, T:0.11
Consensus pattern (19 bp):
AGCCTCCAGCGGCCGTACA
Found at i:30402940 original size:132 final size:132
Alignment explanation
Indices: 30402698--30403178 Score: 568
Period size: 132 Copynumber: 3.7 Consensus size: 132
30402688 ATTATTCATT
* *
30402698 TAAAAATTCTTTAAAACGAAGACGAGATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
1 TAAAAATTCTTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
*
30402763 GCTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACCCACGTCT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACCCACGTCT
30402828 TC
131 TC
* * *
30402830 TAAAGATTCTTTAAAACGAAGGCGAGGTTTGGTATTTGGCAATTTGCGGAATCGTGCCCTAACGT
1 TAAAAATTCTTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* * * * *** *
30402895 GTTAGGTTGCAATTTCTCATTTGCTCAAAATGATCGAATATCCCTTCAAAATTTCGTTCATGTCT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACCCACGTCT
30402960 TC
131 TC
* * * * * *
30402962 TAAAAATCCTTTAAAACGAAGGCGATGTTCGATATTTGACAATTCGCGGAATCGTTCCCTAACAT
1 TAAAAATTCTTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* * * * * **** *
30403027 GCTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGACTGTCCCTTTAGAATTTTGTTCATGTCT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACCCACGTCT
30403092 TC
131 TC
* * ** *** * * **
30403094 TAAAAACTCTTTAAAACTAAGGTAATACTCGATGTTTGGCAATTC-CGGAATCGTGCCCTATTGT
1 TAAAAATTCTTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* *
30403158 GCTGGGTTGCGATTTCCCGTT
66 GCTGGGTTGCAATTTCTCGTT
30403179 CGTTCAATGA
Statistics
Matches: 301, Mismatches: 48, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
131 34 0.11
132 267 0.89
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (132 bp):
TAAAAATTCTTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACCCACGTCT
TC
Found at i:30404197 original size:26 final size:26
Alignment explanation
Indices: 30404168--30404275 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
30404158 TGATACAAAT
30404168 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
30404194 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30404220 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
30404246 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30404272 TGAT
1 TGAT
30404276 TGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:30407832 original size:19 final size:19
Alignment explanation
Indices: 30407808--30407853 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
30407798 TCTTCTTTCC
30407808 TTTGCATT-CATCCCATGCA
1 TTTGCATTGCATCCCAT-CA
**
30407827 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCCCATCA
30407846 TTTGCATT
1 TTTGCATT
30407854 AAATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCCCATCA
Found at i:30409863 original size:4 final size:4
Alignment explanation
Indices: 30409856--30409899 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
30409846 AAAAAGGAAG
* *
30409856 AAGA AAGA AAAA AAGAA AAGAA AAGA AAGA AAGA AAGA GAGA AA
1 AAGA AAGA AAGA AAG-A AAG-A AAGA AAGA AAGA AAGA AAGA AA
30409900 AAGATTAGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 26 0.74
5 9 0.26
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:30409877 original size:13 final size:13
Alignment explanation
Indices: 30409856--30409891 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
30409846 AAAAAGGAAG
30409856 AAGAAAGAAAA-A
1 AAGAAAGAAAAGA
30409868 AAGAAAAGAAAAGA
1 AAG-AAAGAAAAGA
30409882 AAGAAAGAAA
1 AAGAAAGAAA
30409892 GAGAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.14
13 15 0.68
14 4 0.18
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAGA
Found at i:30409902 original size:18 final size:18
Alignment explanation
Indices: 30409846--30409903 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
30409836 GTCATAAAAA
* *
30409846 AAAAAGGAAG-AAGAAAG
1 AAAAAGAAAGAAAGAGAG
*
30409863 -AAAA-AAAGAAA-AGAA
1 AAAAAGAAAGAAAGAGAG
30409878 AAGAAAGAAAGAAAGAGAG
1 AA-AAAGAAAGAAAGAGAG
30409897 AAAAAGA
1 AAAAAGA
30409904 TTAGGTACCG
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
15 5 0.16
16 7 0.22
17 3 0.09
18 12 0.38
19 5 0.16
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAGAAAGAGAG
Found at i:30409903 original size:22 final size:22
Alignment explanation
Indices: 30409841--30409893 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
30409831 TGATAGTCAT
*
30409841 AAAAAAA-AAAGGAAGAAGAAAG
1 AAAAAAAGAAAAGAA-AAGAAAG
30409863 AAAAAAAGAAAAGAAAAGAAAG
1 AAAAAAAGAAAAGAAAAGAAAG
*
30409885 AAAGAAAGA
1 AAAAAAAGA
30409894 GAGAAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAAAAAGAAAAGAAAAGAAAG
Found at i:30410425 original size:3 final size:3
Alignment explanation
Indices: 30410417--30410454 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
30410407 AGACCATAAA
30410417 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
30410455 TAATAATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:30410459 original size:3 final size:3
Alignment explanation
Indices: 30410453--30410520 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
30410443 CAACAACAAC
30410453 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
30410501 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
30410521 GAAAAAGAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:30410528 original size:6 final size:6
Alignment explanation
Indices: 30410519--30410562 Score: 63
Period size: 6 Copynumber: 7.2 Consensus size: 6
30410509 TAATAATAAT
30410519 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAGA AA-AGAA AAGAAA A
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAA-A AAGA-AA AAGAAA A
30410563 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:30411726 original size:64 final size:64
Alignment explanation
Indices: 30411648--30411771 Score: 187
Period size: 64 Copynumber: 1.9 Consensus size: 64
30411638 TCATTCGTAA
* * *
30411648 CACATCTAGTTAGGAGCATTTGATTCACT-TCGATCATAGCATTCTAATTATTTGACATAAACAT
1 CACATCTAGTTAGGAACAATTGATTCA-TGTCGATCATAGCATCCTAATTATTTGACATAAACAT
* *
30411712 CACATCTAGTTAGGAACAATTGATTCATGTTGATCATAGCATCCTAATTATTTGGCATAA
1 CACATCTAGTTAGGAACAATTGATTCATGTCGATCATAGCATCCTAATTATTTGACATAA
30411772 GCATAGGCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 1 0.02
64 53 0.98
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAACAATTGATTCATGTCGATCATAGCATCCTAATTATTTGACATAAACAT
Found at i:30412029 original size:131 final size:131
Alignment explanation
Indices: 30411793--30412632 Score: 1308
Period size: 131 Copynumber: 6.4 Consensus size: 131
30411783 TGAAACAGAA
* *
30411793 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGGGTAAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
30411858 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTTGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
30411923 T
131 T
* ** * * *
30411924 TATAGATCTTACCTCCATGAAGTTGTAGTGGGGCAAATCGAAGACGACGAAACTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* * *
30411989 AGTTGCAGTGAAGTAGATTTAAGGAAGTTCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
30412054 T
131 T
* *
30412055 TATAGATCTTGTCTCCCTAAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
30412120 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
30412185 T
131 T
* * *
30412186 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCGAAGACGACGAAACTTGGCTTCCTAA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* *
30412251 AGTTGTAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
30412316 T
131 T
30412317 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* * * *
30412382 ATTTGCAGTGAAGCAGATTTAAGCAAGTACTAGCTCCATAAAGTTGTAGTGGAGTAGGCTGAAGA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
30412447 T
131 T
* *
30412448 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* * ** **
30412513 AGTTACAGTGAAGCAGATTTAAGCAAG-CCTTAACTCCCT-AAGCCGTAG-GGTAACAGGCTGAA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCC-TAGCTCCCTAAAGTTGTAGTGG-AGTAGGCTGAA
*
30412575 GAT
129 TAT
* * * * *
30412578 TGTAGATCTTGTCTCCCCGAAGTTGCAGTGGAGCAGATCGAAGATGATGAATCTT
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTT
30412633 ATATCTCTAG
Statistics
Matches: 658, Mismatches: 49, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
129 2 0.00
130 70 0.11
131 586 0.89
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (131 bp):
TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
T
Found at i:30412347 original size:45 final size:44
Alignment explanation
Indices: 30412284--30412482 Score: 122
Period size: 45 Copynumber: 4.5 Consensus size: 44
30412274 CAAGTCCTAG
* * *
30412284 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTGAAGTTGTAGTGGAGCAGACTGAAGA-TGTAGATCTTGT
* * * * *
30412329 CTCCCTGAAGTTGCAGTGGGGCA-AATCGAAGACG-ACGAATCTTGG
1 CTCCCTGAAGTTGTAGTGGAGCAGACT-GAAGATGTA-G-ATCTTGT
* * * * * * * *
30412374 CTTCCTGAATTTGCAGTGAAGCAGATTTAAGCAAGT--A-CTAG-
1 CTCCCTGAAGTTGTAGTGGAGCAGACTGAAG-ATGTAGATCTTGT
* * * *
30412415 CTCCATAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTGAAGTTGTAGTGGAGCAGACTGAAGA-TGTAGATCTTGT
30412460 CTCCCTGAAGTTGTAGTGGAGCA
1 CTCCCTGAAGTTGTAGTGGAGCA
30412483 AATCGAAGAC
Statistics
Matches: 112, Mismatches: 31, Indels: 22
0.68 0.19 0.13
Matches are distributed among these distances:
40 1 0.01
41 23 0.21
42 3 0.03
43 3 0.03
44 6 0.05
45 72 0.64
46 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
CTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATGTAGATCTTGT
Found at i:30414415 original size:46 final size:46
Alignment explanation
Indices: 30414362--30414537 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
30414352 TATTTGGGCA
30414362 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
30414408 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
30414455 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
30414501 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30414538 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:30414517 original size:93 final size:93
Alignment explanation
Indices: 30414358--30414529 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
30414348 GGGATATTTG
* *
30414358 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
30414423 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
30414451 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
30414516 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
30414530 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:30417507 original size:15 final size:15
Alignment explanation
Indices: 30417487--30417555 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
30417477 GTATCTTGGG
30417487 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
30417502 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
30417517 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
30417532 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
30417547 TTTCTTTAT
1 TTTCTTTAT
30417556 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:30417556 original size:30 final size:30
Alignment explanation
Indices: 30417478--30417565 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
30417468 CATAGTATCG
* * * *
30417478 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
30417508 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
30417538 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
30417566 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:30420002 original size:46 final size:46
Alignment explanation
Indices: 30419949--30420124 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
30419939 TATTTGGGCA
30419949 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
30419995 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
30420042 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
30420088 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30420125 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:30420104 original size:93 final size:93
Alignment explanation
Indices: 30419945--30420116 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
30419935 GGGATATTTG
* *
30419945 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
30420010 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
30420038 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
30420103 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
30420117 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:30421448 original size:18 final size:19
Alignment explanation
Indices: 30421425--30421464 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
30421415 TACGGGGTGT
30421425 TACAAGCCTCCAGCG-CCG
1 TACAAGCCTCCAGCGACCG
*
30421443 TACAAGCCTTCAGCGACCG
1 TACAAGCCTCCAGCGACCG
30421462 TAC
1 TAC
30421465 CACCTCCGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.25, C:0.40, G:0.20, T:0.15
Consensus pattern (19 bp):
TACAAGCCTCCAGCGACCG
Found at i:30424115 original size:132 final size:132
Alignment explanation
Indices: 30423873--30424353 Score: 635
Period size: 132 Copynumber: 3.7 Consensus size: 132
30423863 ATTATTCATT
* *
30423873 TAAAAATTCTTTAAAACGAA-GACGAGATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
1 TAAAAATTCTTTAAAACGAATG-CAAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
* *
30423937 TGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATCCATGTC
65 TGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTC
30424002 TTC
130 TTC
* * * * * *
30424005 TAAAGATTCTTTAAAACGAATGCAAGGTTTGGTATTTGGCAATTCACAGAATCGTGCCCTAACGT
1 TAAAAATTCTTTAAAACGAATGCAAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* * *
30424070 GTTGGGTTGCAATTTCTCGTTTGCTCAAAATGATCGAATATCCCTTCAAAATTTCGTTCATGTCT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCT
30424135 TC
131 TC
* * * * *
30424137 TAAAAATCCTTTAAAACGAAGGCGATG-TTCGATATTTGACAATTCGCTGAATCGTGCCCTAACG
1 TAAAAATTCTTTAAAACGAATGC-AAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
* * * * *
30424201 TGCTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAATGTCCCTTTAGAATTTCTTTCATGTC
65 TGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTC
30424266 TTC
130 TTC
* * * * * * * *
30424269 TAAAAACTCTTTAAAACAAATGTAATACTCGGTGTTTGGCAATTCG-GGAATCGTGCCCTATCGT
1 TAAAAATTCTTTAAAACGAATGCAAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
*
30424333 GCTGGGTTGCAATTTCCCGTT
66 GCTGGGTTGCAATTTCTCGTT
30424354 CGTTCAATGA
Statistics
Matches: 305, Mismatches: 41, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
131 37 0.12
132 265 0.87
133 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (132 bp):
TAAAAATTCTTTAAAACGAATGCAAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCT
TC
Found at i:30424566 original size:25 final size:24
Alignment explanation
Indices: 30424525--30424574 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
30424515 ACTTACAAAT
* *
30424525 TTTTCGGAAGTCAAAATTTATCATG
1 TTTTCGGAAGGCAAAA-TGATCATG
30424550 TTTTC-GAAGGCATAAATGATCATG
1 TTTTCGGAAGGCA-AAATGATCATG
30424574 T
1 T
30424575 CCTATCGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (24 bp):
TTTTCGGAAGGCAAAATGATCATG
Found at i:30440120 original size:13 final size:13
Alignment explanation
Indices: 30440104--30440136 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
30440094 TGTAATTAAA
*
30440104 TTAGTTAATTAGT
1 TTAGATAATTAGT
30440117 TTAGATAATTAGT
1 TTAGATAATTAGT
30440130 TTA-ATAA
1 TTAGATAA
30440137 ACAAAACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:30448211 original size:5 final size:5
Alignment explanation
Indices: 30448201--30448277 Score: 61
Period size: 5 Copynumber: 14.8 Consensus size: 5
30448191 TTATTCTCAT
*
30448201 TTTTA TTTTA TTTTA -TTTA TTTTA TTTTTA TTTTTC TTTTGA TTTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT-A -TTTTA
*
30448249 TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
30448278 GAAAGACATA
Statistics
Matches: 60, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
3 3 0.05
4 4 0.07
5 30 0.50
6 19 0.32
7 4 0.07
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:30448216 original size:26 final size:25
Alignment explanation
Indices: 30448185--30448234 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
30448175 CCTCCTATTT
30448185 TTTTATTTATTCTCATTTTTATTTTA
1 TTTTATTTATT-TCATTTTTATTTTA
*
30448211 TTTTATTTATTTTATTTTTATTTT
1 TTTTATTTATTTCATTTTTATTTT
30448235 TCTTTTGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTATTTATTTCATTTTTATTTTA
Found at i:30448221 original size:14 final size:15
Alignment explanation
Indices: 30448202--30448277 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 15
30448192 TATTCTCATT
30448202 TTTATTTTA-TTTTA
1 TTTATTTTATTTTTA
30448216 TTTATTTTATTTTTA
1 TTTATTTTATTTTTA
*
30448231 TTTTTCTTTTGATTTTTA
1 --TTTATTTT-ATTTTTA
* *
30448249 TTTTCATTTCAATTTTA
1 -TTT-ATTTTATTTTTA
30448266 -TTATTTTATTTT
1 TTTATTTTATTTT
30448278 GAAAGACATA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
14 17 0.33
15 7 0.14
17 17 0.33
18 10 0.20
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (15 bp):
TTTATTTTATTTTTA
Found at i:30448247 original size:7 final size:6
Alignment explanation
Indices: 30448180--30448257 Score: 61
Period size: 6 Copynumber: 12.8 Consensus size: 6
30448170 TGAATCCTCC
* * *
30448180 TATTTT T-TTATT TATTCT CATTTT TA-TTT TATTTT ATTTATTT TATTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT -TAT-TTT TATTTT
* * *
30448229 TATTTT TCTTTT GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTTT TATTT
30448258 CAATTTTATT
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
5 7 0.12
6 40 0.71
7 6 0.11
8 3 0.05
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:30451181 original size:13 final size:13
Alignment explanation
Indices: 30451165--30451197 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
30451155 TTTAATTAAA
*
30451165 TTAGTTAATTAGT
1 TTAGATAATTAGT
30451178 TTAGATAATTAGT
1 TTAGATAATTAGT
30451191 TTA-ATAA
1 TTAGATAA
30451198 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:30451783 original size:17 final size:17
Alignment explanation
Indices: 30451761--30451795 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
30451751 TCAACATAAC
30451761 CCATGTCTAAAAATCAT
1 CCATGTCTAAAAATCAT
30451778 CCATGTCTAAAAATCAT
1 CCATGTCTAAAAATCAT
30451795 C
1 C
30451796 TAACTTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.29
Consensus pattern (17 bp):
CCATGTCTAAAAATCAT
Found at i:30452067 original size:18 final size:19
Alignment explanation
Indices: 30452033--30452073 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
30452023 TAATTAATAG
30452033 TTAATATAATATATTATAA
1 TTAATATAATATATTATAA
* *
30452052 TTAATA-AATATCTTATAC
1 TTAATATAATATATTATAA
30452070 TTAA
1 TTAA
30452074 AGTATAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAATATAATATATTATAA
Found at i:30454697 original size:20 final size:20
Alignment explanation
Indices: 30454672--30454730 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
30454662 TAAATATGGT
30454672 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
30454692 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
30454712 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
30454731 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:30454712 original size:11 final size:11
Alignment explanation
Indices: 30454676--30454730 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
30454666 TATGGTATGT
30454676 ATGATATGCAC
1 ATGATATGCAC
* *
30454687 ATGAAATG--T
1 ATGATATGCAC
30454696 ATGATATGCAC
1 ATGATATGCAC
*
30454707 ATGATATG--T
1 ATGATATGCAC
30454716 ATGATATGCAC
1 ATGATATGCAC
30454727 ATGA
1 ATGA
30454731 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:30454808 original size:24 final size:24
Alignment explanation
Indices: 30454781--30454971 Score: 305
Period size: 24 Copynumber: 8.0 Consensus size: 24
30454771 CAGGAAGTGA
30454781 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
30454805 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
30454829 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
30454853 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
30454877 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
30454900 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
30454924 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
30454948 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
30454972 ATGATAAAGC
Statistics
Matches: 159, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.14
24 125 0.79
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:30455198 original size:31 final size:31
Alignment explanation
Indices: 30455163--30455264 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
30455153 CGTTTACAGT
30455163 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
30455194 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATTTGA
1 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
*
30455232 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
30455263 AA
1 AA
30455265 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
31 30 0.49
33 1 0.02
36 1 0.02
38 29 0.48
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:30455233 original size:38 final size:38
Alignment explanation
Indices: 30455180--30455287 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
30455170 TCGGCCCAGT
30455180 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
30455218 AATATGAAATTTGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
30455256 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
30455288 GCATGATTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 53 0.80
39 13 0.20
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:30461729 original size:27 final size:26
Alignment explanation
Indices: 30461699--30461823 Score: 142
Period size: 27 Copynumber: 4.7 Consensus size: 26
30461689 ATATAGTTAT
*
30461699 TGTGACAGAGCCACCAGAACAGATATA
1 TGTGGCAGAGCCACCAGAACAGATA-A
* *
30461726 TGTGGTAGAGCCACCAGATCAGATAA
1 TGTGGCAGAGCCACCAGAACAGATAA
*
30461752 TCGTGGCATAGCCACCAGAACAGATATA
1 T-GTGGCAGAGCCACCAGAACAGATA-A
* *
30461780 TGTGGCAGAGCCACTAGATCAGATAA
1 TGTGGCAGAGCCACCAGAACAGATAA
* *
30461806 TTGTGACATAGCCACCAG
1 -TGTGGCAGAGCCACCAG
30461824 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.04
27 78 0.94
28 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
TGTGGCAGAGCCACCAGAACAGATAA
Found at i:30461765 original size:54 final size:54
Alignment explanation
Indices: 30461700--30461823 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
30461690 TATAGTTATT
* *
30461700 GTGACAGAGCCACCAGAACAGATATATGTGGTAGAGCCACCAGATCAGATAATC
1 GTGACATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATC
* * *
30461754 GTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATT
1 GTGACATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATC
30461808 GTGACATAGCCACCAG
1 GTGACATAGCCACCAG
30461824 GACGCTTCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
GTGACATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATC
Found at i:30461998 original size:28 final size:26
Alignment explanation
Indices: 30461927--30462002 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
30461917 CAAAATTAAC
* *
30461927 CCTAGGGGTATAACGGTAATTTTGCA
1 CCTAGGGGTATAACAGTAATTTTCCA
30461953 CCTAGGGGTATAACAGTAATTTTCCA
1 CCTAGGGGTATAACAGTAATTTTCCA
* *
30461979 CACATAGGGGTATTATAGTAATTT
1 C-C-TAGGGGTATAACAGTAATTT
30462003 AGCTGCTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 25 0.57
27 1 0.02
28 18 0.41
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTATAACAGTAATTTTCCA
Found at i:30463477 original size:26 final size:26
Alignment explanation
Indices: 30463446--30463553 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
30463436 TGAAATGCCC
*
30463446 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
30463472 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
30463498 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
30463524 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
30463550 ATCA
1 ATCA
30463554 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:30466238 original size:40 final size:40
Alignment explanation
Indices: 30466172--30466322 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
30466162 AAATTGAATG
* * *
30466172 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
30466211 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
30466251 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
30466291 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
30466323 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:30466336 original size:40 final size:40
Alignment explanation
Indices: 30466208--30466338 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
30466198 TATGCTGGAA
* * * *
30466208 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
30466248 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
30466288 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
30466328 ATTATATCCGG
1 ATTATATCCGG
30466339 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:30474225 original size:40 final size:40
Alignment explanation
Indices: 30474159--30474309 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
30474149 AAATTGAATG
* * *
30474159 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
30474198 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
30474238 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
30474278 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
30474310 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:30474323 original size:40 final size:40
Alignment explanation
Indices: 30474195--30474325 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
30474185 TATGCTGGAA
* * * *
30474195 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
30474235 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
30474275 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
30474315 ATTATATCCGG
1 ATTATATCCGG
30474326 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:30476677 original size:17 final size:17
Alignment explanation
Indices: 30476652--30476686 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
30476642 TCAACATAAC
*
30476652 CCATTTCTAAAAATCAT
1 CCATGTCTAAAAATCAT
30476669 CCATGTCTAAAAATCAT
1 CCATGTCTAAAAATCAT
30476686 C
1 C
30476687 TAACTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.26, G:0.03, T:0.31
Consensus pattern (17 bp):
CCATGTCTAAAAATCAT
Found at i:30476952 original size:23 final size:23
Alignment explanation
Indices: 30476920--30476987 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 23
30476910 TAATTAATTA
*
30476920 ATAATTAATATAATATATTATAA-T
1 ATAATAAATAT-ATATATTA-AAGT
*
30476944 -TAATAAATATCTTATACTTAAAGT
1 ATAATAAATAT-ATATA-TTAAAGT
30476968 ATAAGTAAATATATATATTA
1 ATAA-TAAATATATATATTA
30476988 CATTTGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
23 15 0.42
24 7 0.19
25 7 0.19
26 7 0.19
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (23 bp):
ATAATAAATATATATATTAAAGT
Found at i:30476958 original size:18 final size:19
Alignment explanation
Indices: 30476920--30476964 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
30476910 TAATTAATTA
30476920 ATAATTAATATAATATATT
1 ATAATTAATATAATATATT
*
30476939 ATAATTAATA-AATATCTT
1 ATAATTAATATAATATATT
*
30476957 ATACTTAA
1 ATAATTAA
30476965 AGTATAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAATTAATATAATATATT
Found at i:30479840 original size:20 final size:20
Alignment explanation
Indices: 30479815--30479868 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
30479805 ATATATAGAC
30479815 TAAATAAAATAATAAAATAA
1 TAAATAAAATAATAAAATAA
*** * *
30479835 TAAATATCTTATTAAAATAT
1 TAAATAAAATAATAAAATAA
30479855 TAAAT-AAATAATAA
1 TAAATAAAATAATAA
30479869 TTATCTAATT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAAATAATAAAATAA
Found at i:30483407 original size:17 final size:18
Alignment explanation
Indices: 30483385--30483420 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
30483375 TGACTTGGGC
30483385 CGTGTGAG-CCACACGGG
1 CGTGTGAGCCCACACGGG
*
30483402 CGTGTGGGCCCACACGGG
1 CGTGTGAGCCCACACGGG
30483420 C
1 C
30483421 AAGCCACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.33, G:0.42, T:0.11
Consensus pattern (18 bp):
CGTGTGAGCCCACACGGG
Found at i:30484928 original size:24 final size:24
Alignment explanation
Indices: 30484876--30485041 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
30484866 GCTTTATCAT
*
30484876 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
30484901 ATAATTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
30484925 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
30484948 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
30484972 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
30484996 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
30485019 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
30485042 GCACTTCCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
23 42 0.34
24 72 0.58
25 11 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:30484957 original size:47 final size:48
Alignment explanation
Indices: 30484875--30485041 Score: 223
Period size: 47 Copynumber: 3.5 Consensus size: 48
30484865 TGCTTTATCA
* * *
30484875 TATAACTGGAGGCCT-AGCCTCTTTTAATAATTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
30484924 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
30484971 GATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
30485018 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
30485042 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
47 69 0.64
48 25 0.23
49 13 0.12
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:30484981 original size:71 final size:71
Alignment explanation
Indices: 30484876--30485042 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 71
30484866 GCTTTATCAT
* * * * *
30484876 ATAACTGGAGGCCT-AGCCTCTTTTAATAATTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAA
30484940 GCCCTTTA
64 GCCCTTTA
* *
30484948 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
30485013 CCTTTA
66 CCTTTA
30485019 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
30485043 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
CCTTTA
Found at i:30485115 original size:20 final size:20
Alignment explanation
Indices: 30485087--30485157 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
30485077 GCATTTATGA
*
30485087 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
30485107 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
30485127 ACATGTCATGTACATATCAT
1 ACATATCATGTGCATATCAT
30485147 ACATATCATGT
1 ACATATCATGT
30485158 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:30485140 original size:11 final size:11
Alignment explanation
Indices: 30485087--30485157 Score: 64
Period size: 9 Copynumber: 7.0 Consensus size: 11
30485077 GCATTTATGA
*
30485087 ACATCTCATGT
1 ACATATCATGT
*
30485098 GCATATCA--T
1 ACATATCATGT
30485107 ACATATCATGT
1 ACATATCATGT
*
30485118 GCATATCA--T
1 ACATATCATGT
*
30485127 ACATGTCATGT
1 ACATATCATGT
30485138 ACATATCA--T
1 ACATATCATGT
30485147 ACATATCATGT
1 ACATATCATGT
30485158 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
9 24 0.51
11 23 0.49
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (11 bp):
ACATATCATGT
Found at i:30486500 original size:27 final size:27
Alignment explanation
Indices: 30486479--30486820 Score: 366
Period size: 27 Copynumber: 12.7 Consensus size: 27
30486469 AAGGGTAGTT
*
30486479 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
30486506 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
30486533 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
30486560 TGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
30486587 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
30486614 -CGATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * * *
30486641 TGGTAATTATGTAAATTGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
30486668 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
30486695 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
30486722 CGGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
30486749 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
30486776 CAGTAATTCTAT-AACCTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
30486803 CGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATCG
30486821 GGAGTACTTT
Statistics
Matches: 275, Mismatches: 34, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.02
27 265 0.96
28 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:30486566 original size:81 final size:82
Alignment explanation
Indices: 30486481--30486820 Score: 456
Period size: 81 Copynumber: 4.2 Consensus size: 82
30486471 GGGTAGTTTA
* * *
30486481 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATA
*
30486546 AATC-GAGGGTAAAATG
66 AATCTGAGGGTAAAACG
* * * *
30486562 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-CGATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTAT
* *
30486626 AAATC-GGGGGTAAAATG
65 AAATCTGAGGGTAAAACG
* * * *
30486643 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATA
30486708 AA-CTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
* * ** *
30486724 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTAT-
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATA
*
30486788 AACCTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
30486805 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
30486821 GGAGTACTTT
Statistics
Matches: 229, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
80 4 0.02
81 224 0.98
82 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (82 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATA
AATCTGAGGGTAAAACG
Found at i:30486851 original size:54 final size:54
Alignment explanation
Indices: 30486481--30486820 Score: 414
Period size: 54 Copynumber: 6.3 Consensus size: 54
30486471 GGGTAGTTTA
* * * * **
30486481 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
30486535 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * * *
30486589 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * * **
30486643 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
30486697 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* ** * *
30486751 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACG
30486805 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
30486821 GGAGTACTTT
Statistics
Matches: 245, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.01
54 241 0.98
55 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:30489177 original size:13 final size:13
Alignment explanation
Indices: 30489159--30489184 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30489149 TATATATATT
30489159 TATCCCAAAACAA
1 TATCCCAAAACAA
30489172 TATCCCAAAACAA
1 TATCCCAAAACAA
30489185 CATACAATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (13 bp):
TATCCCAAAACAA
Found at i:30492262 original size:26 final size:26
Alignment explanation
Indices: 30492233--30492340 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
30492223 TGATACAAAT
* *
30492233 TGATAGTGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
30492259 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30492285 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30492311 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30492337 TGAT
1 TGAT
30492341 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:30496065 original size:37 final size:37
Alignment explanation
Indices: 30495973--30496116 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
30495963 GCTCAGACGA
* * * *
30495973 AATCTCCACACGAAGTTATCGGGTCTCACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
30496010 AATCT-CACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
30496046 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
30496083 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
30496117 ATATATTTCC
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
36 32 0.31
37 70 0.69
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:30496232 original size:48 final size:48
Alignment explanation
Indices: 30496161--30496594 Score: 681
Period size: 48 Copynumber: 9.0 Consensus size: 48
30496151 TGTTACAACA
* * * * *
30496161 TTCACATTAGCCATTCGGCTTTACCACATCTTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** *
30496209 TTCACATTCTCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
30496257 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
30496305 TTCATATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
30496353 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
30496401 TTCACATTAGCCATTCGGCTTTACCACATATACATATTACACATATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
30496449 TTCATATTAGCCATTCGGCTTTACCACATATACATATTACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
30496497 TTCATATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
30496545 TTCACATTGGTCC-TTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAG-CCATTCGGCTTTACCACATATACATATCACACATATAT
30496593 TT
1 TT
30496595 ATTTATCTTG
Statistics
Matches: 357, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 355 0.99
49 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:30498818 original size:13 final size:13
Alignment explanation
Indices: 30498800--30498824 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30498790 TTTTCGTCCC
30498800 CGAAAATTTCTAG
1 CGAAAATTTCTAG
30498813 CGAAAATTTCTA
1 CGAAAATTTCTA
30498825 CCGATGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (13 bp):
CGAAAATTTCTAG
Found at i:30499906 original size:40 final size:40
Alignment explanation
Indices: 30499848--30500079 Score: 410
Period size: 40 Copynumber: 5.8 Consensus size: 40
30499838 CCAGCATGAT
* *
30499848 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
30499888 TGCTCTTTGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
30499928 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
30499968 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
30500008 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
30500048 TGCTCTTCGGAACTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACT
30500080 CTCAATTCTC
Statistics
Matches: 185, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 185 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:30502112 original size:37 final size:37
Alignment explanation
Indices: 30502053--30502198 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
30502043 AGCTCAGACG
* * *
30502053 AAATCTCCACACGAAGTTATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
30502090 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
30502127 TAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
30502164 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
30502199 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:30502314 original size:48 final size:48
Alignment explanation
Indices: 30502243--30502580 Score: 507
Period size: 48 Copynumber: 7.0 Consensus size: 48
30502233 TGTTACAACA
* * * * *
30502243 TTCACATTAGCCATTCGGCTTTACCACATCTTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
30502291 TTCACATTCTCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
30502339 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
30502387 TTCATATTAGCCATTCGGCTTTACCACATATACATATCACACATATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
30502435 TTCATATTAGCCATTCGGCTTTACCACATATACATATTACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
30502483 TTCATATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
30502531 TTCACATTGGTCC-TTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAG-CCATTCGGCTTTACCACATATACATATCACACATATAT
30502579 TT
1 TT
30502581 ATTTATCTTG
Statistics
Matches: 265, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
48 263 0.99
49 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:30506166 original size:18 final size:19
Alignment explanation
Indices: 30506143--30506179 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
30506133 TTTTAAAAAA
30506143 TATAAA-ATTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
30506161 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
30506180 GTTTATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:30515329 original size:26 final size:26
Alignment explanation
Indices: 30515293--30515346 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
30515283 TACTGTAAAG
30515293 TACAACTAAGAGTTTCTCAGACATAA
1 TACAACTAAGAGTTTCTCAGACATAA
30515319 TACAACTAAGAGTTTCTCAGACATAA
1 TACAACTAAGAGTTTCTCAGACATAA
30515345 TA
1 TA
30515347 ATGTCGGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.28
Consensus pattern (26 bp):
TACAACTAAGAGTTTCTCAGACATAA
Found at i:30520379 original size:54 final size:54
Alignment explanation
Indices: 30520314--30520814 Score: 201
Period size: 54 Copynumber: 9.3 Consensus size: 54
30520304 TTAGTTTACG
**
30520314 AAATTACCAAAATA-CCTCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCT-TAGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
* *
30520368 AAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
** * ** *** * *
30520422 AAATTACTGAAATACCC-TCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCCT-AATTTGTA
* ** * * ** *
30520476 AAATTACCAAAGTACCC-CCGATTTATAAAATTACCTAAATA-TGCTCGATTTGTA
1 AAATTACCAAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCCT-AATTTGTA
* * * ** * *
30520530 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATA-CCCTCGATTTGCA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-AATTTGTA
** * ** * *** *
30520584 AAATTACTGAAATACTCTT-GTAAGATAGAATTACCATTTTA-CCCTCAATTTATA
1 AAATTACCAAAATACCCTTAGTTTG-TAAAATTACCAAAATACCCCT-AATTTGTA
* **** * * * * * *** ** **
30520638 GAATTACCGTTTTACCCTCAATTTATAGAATTAACATTTTACCCCCGATTTACA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
** * * ** * ***
30520692 AAATTACTGAAATACCATTGGTTTACAAAATTACCAAAAATA-CCCTCGATCAATA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACC-AAAATACCCCT-AATTTGTA
* * * *
30520747 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
* *
30520801 GAATTACCGAAATA
1 AAATTACCAAAATA
30520815 TAGGGTAGAA
Statistics
Matches: 337, Mismatches: 100, Indels: 20
0.74 0.22 0.04
Matches are distributed among these distances:
53 9 0.03
54 278 0.82
55 50 0.15
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
Found at i:30520449 original size:81 final size:81
Alignment explanation
Indices: 30520314--30520598 Score: 281
Period size: 81 Copynumber: 3.5 Consensus size: 81
30520304 TTAGTTTACG
* * ** * *
30520314 AAATTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACTGAAATACCCTC-GATTTGTAAAATTATCGA
30520378 AATACCCTTAGTTTGTA
65 AATACCCTTAGTTTGTA
* ** *
30520395 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAA
* *
30520460 ATACCC-TCGACTTGTA
66 ATACCCTTAG-TTTGTA
* ** * ** *
30520476 AAATTACCAAAGTACCCCCGATTTATAAAATTACCT-AAATATGCTCGATTTGTAAAATTACCGA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTA-CTGAAATACCCTCGATTTGTAAAATTATCGA
* *
30520540 AATACCCTCAGTTTGCA
65 AATACCCTTAGTTTGTA
** * *
30520557 AAATTACTGAAATA-CCCTCGATTTGCAAAATTACTGAAATAC
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACTGAAATAC
30520599 TCTTGTAAGA
Statistics
Matches: 164, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
80 7 0.04
81 153 0.93
82 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAA
ATACCCTTAGTTTGTA
Found at i:30520591 original size:27 final size:27
Alignment explanation
Indices: 30520335--30520598 Score: 227
Period size: 27 Copynumber: 9.8 Consensus size: 27
30520325 ATACCTCTAG
** *
30520335 TTTGTAAAATTACCAAAATACCC-CTGG
1 TTTGTAAAATTACTGAAATACCCTC-GA
* *
30520362 TTTGTAAAATTA-TCAAAATACCCT-TA
1 TTTGTAAAATTACT-GAAATACCCTCGA
** *
30520388 GTTTGTAAAATTACCAAAATACCC-CTAA
1 -TTTGTAAAATTACTGAAATACCCTC-GA
*
30520416 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
** *
30520443 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
* * *
30520470 CTTGTAAAATTAC-CAAAGTACCCCCGA
1 TTTGTAAAATTACTGAAA-TACCCTCGA
* **
30520497 TTTATAAAATTACCT-AAATATGCTCGA
1 TTTGTAAAATTA-CTGAAATACCCTCGA
*
30520524 TTTGTAAAATTACCGAAATACCCTC-A
1 TTTGTAAAATTACTGAAATACCCTCGA
*
30520550 GTTTGCAAAATTACTGAAATACCCTCGA
1 -TTTGTAAAATTACTGAAATACCCTCGA
*
30520578 TTTGCAAAATTACTGAAATAC
1 TTTGTAAAATTACTGAAATAC
30520599 TCTTGTAAGA
Statistics
Matches: 196, Mismatches: 28, Indels: 26
0.78 0.11 0.10
Matches are distributed among these distances:
26 5 0.03
27 184 0.94
28 7 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTTGTAAAATTACTGAAATACCCTCGA
Found at i:30520697 original size:27 final size:27
Alignment explanation
Indices: 30520608--30520681 Score: 130
Period size: 27 Copynumber: 2.7 Consensus size: 27
30520598 CTCTTGTAAG
30520608 ATAGAATTACCATTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCAATTT
*
30520635 ATAGAATTACCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCAATTT
*
30520662 ATAGAATTAACATTTTACCC
1 ATAGAATTACCATTTTACCC
30520682 CCGATTTACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCAATTT
Found at i:30520707 original size:27 final size:27
Alignment explanation
Indices: 30520677--30520797 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
30520667 ATTAACATTT
* **
30520677 TACCCCCGATTTACAAAATTACTGAAA
1 TACCCCTGATTTACAAAATTACCAAAA
** *
30520704 TACCATTGGTTTACAAAATTACCAAAAA
1 TACCCCTGATTTACAAAATTACC-AAAA
** *
30520732 TA-CCCTCGATCAATAAAATTACCAAAA
1 TACCCCT-GATTTACAAAATTACCAAAA
* **
30520759 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCCTGATTTACAAAATTACCAAAA
30520786 TACCCCTGATTT
1 TACCCCTGATTT
30520798 GTGGAATTAC
Statistics
Matches: 74, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
27 53 0.72
28 21 0.28
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.28
Consensus pattern (27 bp):
TACCCCTGATTTACAAAATTACCAAAA
Found at i:30520798 original size:27 final size:26
Alignment explanation
Indices: 30520718--30520814 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 26
30520708 ATTGGTTTAC
***
30520718 AAAATTACCAAAAATACCCTCGATCAAT
1 AAAATTACC-AAAATACCCT-GATTTGT
*
30520746 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGATTTGT
30520773 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATA-CCCTGATTTGT
** *
30520800 GGAATTACCGAAATA
1 AAAATTACCAAAATA
30520815 TAGGGTAGAA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 47 0.78
28 13 0.22
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGATTTGT
Found at i:30520988 original size:26 final size:27
Alignment explanation
Indices: 30520815--30520990 Score: 246
Period size: 27 Copynumber: 6.6 Consensus size: 27
30520805 TACCGAAATA
**
30520815 TAGGGTAGAATTACTAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
30520842 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
30520869 TAGGGTAGAATTATCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
30520896 TAGGGTAGAATTATCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
30520923 TAGGGTAGAATTACCAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
30520950 TAGGGTAGAATTACCGAGATA-CCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
30520976 TGGGGTAAAATTACC
1 TAGGGTAGAATTACC
30520991 ATTTTACCCC
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
26 17 0.12
27 120 0.88
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:30521060 original size:105 final size:105
Alignment explanation
Indices: 30520926--30521137 Score: 388
Period size: 105 Copynumber: 2.0 Consensus size: 105
30520916 ACCCCTGTAG
30520926 GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
1 GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
* *
30520991 ATTTTACCCCTAAGGTGTTAAATGACTGTTTTGCCTTGGT
66 ATTTTACCCCTAAGGTGTTAAATGACTATTTTGCCCTGGT
30521031 GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
1 GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
* *
30521096 ATTTTGCCCCTAAGGTGTTAAATGATTATTTTGCCCTGGT
66 ATTTTACCCCTAAGGTGTTAAATGACTATTTTGCCCTGGT
30521136 GG
1 GG
30521138 CCAAGTGACT
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (105 bp):
GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
ATTTTACCCCTAAGGTGTTAAATGACTATTTTGCCCTGGT
Found at i:30521069 original size:27 final size:26
Alignment explanation
Indices: 30521031--30521096 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
30521021 TTGCCTTGGT
30521031 GGTAGAATTACCAAAATACCCCTGTAG
1 GGTAGAATTACCAAAATA-CCCTGTAG
* * * *
30521058 GGTAGAATTACCGAGATACCTTGTGG
1 GGTAGAATTACCAAAATACCCTGTAG
*
30521084 GGTAAAATTACCA
1 GGTAGAATTACCA
30521097 TTTTGCCCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 17 0.52
27 16 0.48
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (26 bp):
GGTAGAATTACCAAAATACCCTGTAG
Found at i:30521573 original size:22 final size:21
Alignment explanation
Indices: 30521521--30521585 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
30521511 TTAAAGCCTT
*
30521521 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGG-TTTGTGCCAAC
*
30521543 CT-ACATATGGTTCTGTGCCAAC
1 CTGA-TTATGGTT-TGTGCCAAC
*
30521565 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGG-TTTGTGCCAA
30521586 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:30521774 original size:27 final size:27
Alignment explanation
Indices: 30521744--30521842 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
30521734 ATTCTGTTAA
* *
30521744 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
30521771 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
30521798 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
30521825 GTGACTCTGTCACAATAT
1 GTGGCTATGCCACAATAT
30521843 TTGATAACTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:30521991 original size:6 final size:6
Alignment explanation
Indices: 30521982--30522094 Score: 83
Period size: 6 Copynumber: 18.3 Consensus size: 6
30521972 TTGCATTCAC
30521982 ATTCTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
30522032 ATACTG ATTCTG ATTCTG ATCCTG -TCACCTG ATTCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
30522081 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
30522095 AATGTTTCTT
Statistics
Matches: 89, Mismatches: 5, Indels: 26
0.74 0.04 0.22
Matches are distributed among these distances:
5 7 0.08
6 67 0.75
7 11 0.12
8 3 0.03
9 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:30522017 original size:31 final size:31
Alignment explanation
Indices: 30521982--30522110 Score: 156
Period size: 31 Copynumber: 4.2 Consensus size: 31
30521972 TTGCATTCAC
30521982 ATTCTGATTCTGTTACCTGATATTGATTCTG
1 ATTCTGATTCTGTTACCTGATATTGATTCTG
*
30522013 ATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGTTACCTGATATTGATTCTG
* *
30522044 ATTCTGATCCTGTCACCTGAT-TCTGATTCTG
1 ATTCTGATTCTGTTACCTGATAT-TGATTCTG
* * * *
30522075 ATTCTAATTCTAGTT--CTGATAATGTTTCTT
1 ATTCTGATTCT-GTTACCTGATATTGATTCTG
30522105 ATTCTG
1 ATTCTG
30522111 TAATGGGTTA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
30 16 0.19
31 66 0.79
32 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGTTACCTGATATTGATTCTG
Found at i:30524056 original size:26 final size:26
Alignment explanation
Indices: 30524026--30524134 Score: 92
Period size: 27 Copynumber: 4.1 Consensus size: 26
30524016 TCCTGTTTAG
* *
30524026 AATACTTTAGTTTACGAAATTACCAA
1 AATACTCTAGTTTACAAAATTACCAA
**
30524052 AATACCTCTAGTTTGTAAAATTACCAA
1 AATA-CTCTAGTTTACAAAATTACCAA
* ** *
30524079 AATACCCCTAGTTTGTAAAATTATCAA
1 AATA-CTCTAGTTTACAAAATTACCAA
* **
30524106 AATACCCCTAGTTTGTAAAATTACCAA
1 AATA-CTCTAGTTTACAAAATTACCAA
30524133 AA
1 AA
30524135 AACCCCTAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
26 4 0.05
27 71 0.95
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.32
Consensus pattern (26 bp):
AATACTCTAGTTTACAAAATTACCAA
Found at i:30524301 original size:81 final size:79
Alignment explanation
Indices: 30524063--30524326 Score: 239
Period size: 81 Copynumber: 3.3 Consensus size: 79
30524053 ATACCTCTAG
* * * *
30524063 TTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCC-CTAGTTTGTAAAAT
1 TTTGTAAAATTACCTAAATACCTCGA-TTTGTAAAATTATCGAAATACCCTC-AGTTTGTAAAAT
* **
30524127 TACCAAAAAACCCCTAA
64 TA-CAAAATACCCCCGA
* * ** * *
30524144 TTTGTGAAATTA-TTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTC-GACTTGTAAAA
1 TTTGTAAAATTACCT-AAATA-CCTCGATTTGTAAAATTATCGAAATACCCTCAG-TTTGTAAAA
*
30524207 TTACCAAAGTACCCCCGA
63 TTA-CAAAATACCCCCGA
* *
30524225 TTTATAAAATTACCTAAATATCCTCGATTTGTAAAATTATCGAAATACCCTCAGTTTGCAAAATT
1 TTTGTAAAATTACCTAAATA-CCTCGATTTGTAAAATTATCGAAATACCCTCAGTTTGTAAAATT
* *
30524290 ACTGAAATACCCTCGA
65 AC-AAAATACCCCCGA
*
30524306 TTTGCAAAATTA-CTGAAATAC
1 TTTGTAAAATTACCT-AAATAC
30524327 TCCTATAAGA
Statistics
Matches: 147, Mismatches: 28, Indels: 17
0.77 0.15 0.09
Matches are distributed among these distances:
80 5 0.03
81 135 0.92
82 7 0.05
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (79 bp):
TTTGTAAAATTACCTAAATACCTCGATTTGTAAAATTATCGAAATACCCTCAGTTTGTAAAATTA
CAAAATACCCCCGA
Found at i:30524525 original size:27 final size:26
Alignment explanation
Indices: 30524042--30524541 Score: 216
Period size: 27 Copynumber: 18.5 Consensus size: 26
30524032 TTAGTTTACG
30524042 AAATTACCAAAATACCTCT-AGTTTGTA
1 AAATTACCAAAATACC-CTGA-TTTGTA
30524069 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATA-CCCTGA-TTTGTA
*
30524096 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATA-CCCTGA-TTTGTA
* * *
30524123 AAATTACCAAAAAACCCCTAATTTGTG
1 AAATTACCAAAATA-CCCTGATTTGTA
*** **
30524150 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
*** *
30524177 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
* * *
30524204 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATA-CCCTGATTTGTA
* *
30524231 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
* * * *
30524258 AAATTATCGAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTGA-TTTGTA
** *
30524285 AAATTACTGAAATACCCTCGATTTGCA
1 AAATTACCAAAATACCCT-GATTTGTA
** **
30524312 AAATTACTGAAATACTCCT-ATAAGATA
1 AAATTACCAAAATAC-CCTGATTTG-TA
* *** * * *
30524339 GAATTACCATTTTACTCTCAATTTATA
1 AAATTACCAAAATACCCT-GATTTGTA
* **** * *
30524366 GAATTACCGTTTTACCCTCAATTTATA
1 AAATTACCAAAATACCCT-GATTTGTA
* *** **
30524393 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCT-GATTTGTA
** * * **
30524420 AAATTACTGAAATACCATTGGTTTACA
1 AAATTACCAAAATACC-CTGATTTGTA
***
30524447 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACCAAAATACCCT-GATTTGTA
*
30524474 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGATTTGTA
*
30524501 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCCTGATTTGTA
* *
30524528 GAATTACCGAAATA
1 AAATTACCAAAATA
30524542 TAGGGTAGAA
Statistics
Matches: 385, Mismatches: 74, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
26 13 0.03
27 355 0.92
28 17 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGATTTGTA
Found at i:30524572 original size:27 final size:27
Alignment explanation
Indices: 30524542--30524717 Score: 228
Period size: 27 Copynumber: 6.6 Consensus size: 27
30524532 TACCGAAATA
* *
30524542 TAGGGTAGAATTACTGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
* * * *
30524569 TAGGGTAAAATTATCGCAATACCTCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
30524596 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
**
30524623 TAGGGTAGAATTATTGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
30524650 TAGGGTAGAATTACCAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
30524677 TAGGGTAGAATTACCGAGATA-CCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
30524703 TGGGGTAAAATTACC
1 TAGGGTAGAATTACC
30524718 ATTTTGCCCC
Statistics
Matches: 129, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 17 0.13
27 112 0.87
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:30524654 original size:81 final size:81
Alignment explanation
Indices: 30524498--30524716 Score: 247
Period size: 81 Copynumber: 2.8 Consensus size: 81
30524488 CCCCTGGTTT
** *
30524498 GTAAAATTACCAAAATACCCCTG-ATTTGTGGAATTACCGAAATA------TAGGGTAGAATTAC
1 GTAAAATTACCAAAATACCCCTGTA-GGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
30524556 TGAAATACCCCTATAGG
65 TGAAATACCCCTATAGG
* ** * *
30524573 GTAAAATTATCGCAATACCTCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATT
1 GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
*
30524638 GAAATACCCCTGTAGG
66 GAAATACCCCTATAGG
* * * * *
30524654 GTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATA-CCTTGTGGGGTAAAATTAC
1 GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
30524717 CATTTTGCCC
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
75 35 0.30
76 1 0.01
80 15 0.13
81 67 0.57
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
GAAATACCCCTATAGG
Found at i:30524783 original size:105 final size:105
Alignment explanation
Indices: 30524653--30524864 Score: 397
Period size: 105 Copynumber: 2.0 Consensus size: 105
30524643 ACCCCTGTAG
*
30524653 GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
1 GGTAGAACTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
*
30524718 ATTTTGCCCCTAAGGTGTTAAATGACTGTTTTGCCCTGGT
66 ATTTTGCCCCTAAGGTGTTAAATGACTATTTTGCCCTGGT
30524758 GGTAGAACTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
1 GGTAGAACTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
*
30524823 ATTTTGCCCCTAAGGTGTTAAATGATTATTTTGCCCTGGT
66 ATTTTGCCCCTAAGGTGTTAAATGACTATTTTGCCCTGGT
30524863 GG
1 GG
30524865 CCAAGTGACT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (105 bp):
GGTAGAACTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCTTGTGGGGTAAAATTACC
ATTTTGCCCCTAAGGTGTTAAATGACTATTTTGCCCTGGT
Found at i:30524803 original size:27 final size:26
Alignment explanation
Indices: 30524758--30524823 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
30524748 TTGCCCTGGT
*
30524758 GGTAGAACTACCAAAATACCCCTGTAG
1 GGTAGAATTACCAAAATA-CCCTGTAG
* * * *
30524785 GGTAGAATTACCGAGATACCTTGTGG
1 GGTAGAATTACCAAAATACCCTGTAG
*
30524811 GGTAAAATTACCA
1 GGTAGAATTACCA
30524824 TTTTGCCCCT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
GGTAGAATTACCAAAATACCCTGTAG
Found at i:30525281 original size:22 final size:22
Alignment explanation
Indices: 30525249--30525313 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
30525239 TTAAAGCCTT
* *
30525249 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
30525271 CT-ATTTATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
30525293 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
30525314 ACGTATTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:30525530 original size:54 final size:53
Alignment explanation
Indices: 30525472--30525573 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
30525462 ATTCTGTTAA
* * * * *
30525472 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCAC-AATATCTGTTTTG
* *
30525526 GTGGCTCTGCCACAATATCTGTATCTAGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATATCTG
30525574 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATATCTGTTTTG
Found at i:30525560 original size:27 final size:26
Alignment explanation
Indices: 30525472--30525573 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
30525462 ATTCTGTTAA
* *
30525472 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* *
30525499 GTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
*
30525526 GTGGCTCTGCCACAATATCTGTATCTA
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
30525553 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
30525574 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.14
27 49 0.75
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:30525719 original size:6 final size:6
Alignment explanation
Indices: 30525710--30525828 Score: 104
Period size: 6 Copynumber: 19.3 Consensus size: 6
30525700 TTGCATTCAC
30525710 ATTCTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
30525760 ATACTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
30525809 ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
30525829 AATGTTTCTT
Statistics
Matches: 95, Mismatches: 5, Indels: 26
0.75 0.04 0.21
Matches are distributed among these distances:
5 7 0.07
6 74 0.78
7 10 0.11
8 3 0.03
9 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:30525745 original size:31 final size:31
Alignment explanation
Indices: 30525710--30525813 Score: 151
Period size: 31 Copynumber: 3.4 Consensus size: 31
30525700 TTGCATTCAC
*
30525710 ATTCTGATTCTGTTACCTGATATTGATTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTG
30525741 ATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTG
30525772 ATTCTGATTCTGATT--CTG-TCACCTGATTCTG
1 ATTCTGATTCTG-TTACCTGAT-A-CTGATTCTG
30525803 ATTCTGATTCT
1 ATTCTGATTCT
30525814 AATTCTAGTT
Statistics
Matches: 69, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
29 1 0.01
30 4 0.06
31 62 0.90
32 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGTTACCTGATACTGATTCTG
Found at i:30525767 original size:37 final size:37
Alignment explanation
Indices: 30525733--30525819 Score: 147
Period size: 37 Copynumber: 2.4 Consensus size: 37
30525723 TACCTGATAT
*
30525733 TGATTCTGATTCTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTGATACTGATTC
*
30525770 TGATTCTGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTGATACTGATTC
*
30525807 TGATTCTAATTCT
1 TGATTCTGATTCT
30525820 AGTTCTGATA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTGATACTGATTC
Found at i:30528222 original size:45 final size:46
Alignment explanation
Indices: 30528128--30528711 Score: 282
Period size: 44 Copynumber: 12.8 Consensus size: 46
30528118 GTGGCAAGTT
* * * * * * *
30528128 TTATCTCCCTGAAGTTACAGTCGAGCAAAT-TGAAGTTA-CAGATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
* *
30528172 TTATCTCTCTGAAGCTGCAGTGGAGTAGATCT-AAGATAGCAAATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
* * * * *
30528217 TTATCTCTCTAAAGTTGCAGTAGAGCAGAT-TAAAGCTA-TAAACC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
* * * * * *
30528261 TTATCTATCTGAACTTGCAGTAGAGCAGGT-TGAAA-TTATG--AGTC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCT-AAAGATA-GCAAATC
* * *
30528305 TTATCTCCCTGAAATTGCAGTGGAGCAGA-CTAAAGATAGCGAATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
* * * * * * *
30528350 TTATTTCCCTGAAG-TGC---GGAACAAATTAAAGCTAAAAATAAACAAATT
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGA-T----CTAAAGAT-AGCAAATC
* * * *
30528398 TTATCTCCCTAAAGTTGCAGTGGAGAAGAT-TGATGACAGGCTA-CAAATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCT-A--A-A-GATAGCAAATC
* * **
30528447 TTATCTCTTTGAAGTTGCAGTGGAGTAGAT-TAAAGCCA-CAAATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
* * * * * * *
30528491 TTATCTCCCTAAAGTTGTAATGGAGTAGA-CCAAAGATAGTAAATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
* * ** *
30528536 TTATCTCTTTGAAGTTGCAGTGGAGCAGA-CTGAAGATAATAAACC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
*
30528581 TTATCTC-CTTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAGATAGCAAATC
1 TTATCTCTC-TGAAGTTGCAGTGGAGCAGA-T----CTA-AAGATAGCAAATC
* * * * * *
30528633 TTATCTCCCTGAAGTTACAGTAGAGCAGAT-TGAAGCTA-CTAATC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
*
30528677 TTATCT-TCCTGAAATTGCAGTGGAGCAGAT-TAAAG
1 TTATCTCT-CTGAAGTTGCAGTGGAGCAGATCTAAAG
30528712 TGAACTAATC
Statistics
Matches: 416, Mismatches: 86, Indels: 76
0.72 0.15 0.13
Matches are distributed among these distances:
41 6 0.01
43 4 0.01
44 167 0.40
45 127 0.31
46 3 0.01
47 8 0.02
48 18 0.04
49 36 0.09
50 2 0.00
51 5 0.01
52 39 0.09
53 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (46 bp):
TTATCTCTCTGAAGTTGCAGTGGAGCAGATCTAAAGATAGCAAATC
Found at i:30528451 original size:49 final size:44
Alignment explanation
Indices: 30528391--30528711 Score: 149
Period size: 45 Copynumber: 7.0 Consensus size: 44
30528381 CTAAAAATAA
* *
30528391 ACAAATTTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGATGACAGGCT
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATT-A--A-A-GCC
** * *
30528440 ACAAATCTTATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAGCC
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTAAAGCC
* * * ** **
30528484 ACAAATCTTATCTCCCTAAAGTTGTAATGGAGTAGACCAAAGAT
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTAAAGCC
* ** * * * * **
30528528 AGTAAATCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTGAAGATA
1 A-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTAAAG-CC
* * * * * * *
30528574 ATAAACCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGCTAC
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTAAAGC--C
* * * * * *
30528620 AAGATAGCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCT
1 -----A-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTAAAGCC
* * *
30528670 ACTAATCTTATCTTCCTGAAA-TTGCAGTGGAGCAGATTAAAG
1 ACAAATCTTATCTCCCT-AAAGTTGCAGTGGAGAAGATTAAAG
30528712 TGAACTAATC
Statistics
Matches: 216, Mismatches: 45, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
44 70 0.32
45 73 0.34
46 2 0.01
48 1 0.00
49 33 0.15
51 1 0.00
52 36 0.17
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTAAAGCC
Found at i:30528659 original size:97 final size:96
Alignment explanation
Indices: 30528523--30528707 Score: 246
Period size: 97 Copynumber: 1.9 Consensus size: 96
30528513 GAGTAGACCA
* ** * *
30528523 AAGATAGTAAATCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTGAAGATAATAAACCTTATC-T
1 AAGATAGCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAAT-AACCTTATCTT
* *
30528587 CCTTGAAGTTGTAGTGGAGCAGATTGAAGCTAC
65 CC-TGAAATTGCAGTGGAGCAGATTGAAGCTAC
* * * *
30528620 AAGATAGCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCTACTAATCTTATCTTC
1 AAGATAGCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAATAACCTTATCTTC
30528685 CTGAAATTGCAGTGGAGCAGATT
66 CTGAAATTGCAGTGGAGCAGATT
30528708 AAAGTGAACT
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
96 28 0.37
97 48 0.63
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (96 bp):
AAGATAGCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAGATAATAACCTTATCTTC
CTGAAATTGCAGTGGAGCAGATTGAAGCTAC
Found at i:30530374 original size:2 final size:2
Alignment explanation
Indices: 30530367--30530396 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
30530357 TCGTAGTCAC
30530367 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30530397 CTTATGCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30533179 original size:21 final size:20
Alignment explanation
Indices: 30533138--30533180 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 20
30533128 TTTTAGTTTG
30533138 TTGTTAATTTTCATTTATATA
1 TTGTTAATTTT-ATTTATATA
30533159 TTGTTAAATTTT-TTTACTATA
1 TTGTT-AATTTTATTTA-TATA
30533180 T
1 T
30533181 AAGTTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.20
21 10 0.50
22 6 0.30
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (20 bp):
TTGTTAATTTTATTTATATA
Found at i:30533409 original size:2 final size:2
Alignment explanation
Indices: 30533402--30533428 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
30533392 TTTTGGGTAT
30533402 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
30533429 TTGTTGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:30536081 original size:33 final size:32
Alignment explanation
Indices: 30536044--30536114 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
30536034 ACTGTTTAGT
*
30536044 TATTACTT-ATTTTAAGTTCTCTTTTATATATTA
1 TATTA-TTCATTTTAAATTCT-TTTTATATATTA
* *
30536077 TATTATTCATTTTAAATTGTTTTTATATAGTA
1 TATTATTCATTTTAAATTCTTTTTATATATTA
30536109 T-TTATT
1 TATTATT
30536115 TTGAACTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 5 0.15
32 14 0.41
33 15 0.44
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (32 bp):
TATTATTCATTTTAAATTCTTTTTATATATTA
Found at i:30536110 original size:27 final size:26
Alignment explanation
Indices: 30536075--30536246 Score: 152
Period size: 25 Copynumber: 6.5 Consensus size: 26
30536065 TTTTATATAT
30536075 TATATTATTCATTTTAAATTGTTTTTA
1 TATATTATTCATTTTAAATTG-TTTTA
* * * *
30536102 TATAGTATTTATTTTGAACTGTTTTA
1 TATATTATTCATTTTAAATTGTTTTA
* *
30536128 T-TA-TATACTATTTTAAATTGTTTCA
1 TATATTATTC-ATTTTAAATTGTTTTA
* *
30536153 TATATTATT-ATTTTAAGTTGTTATA
1 TATATTATTCATTTTAAATTGTTTTA
* *
30536178 TATATTATTCATCTTTAAATATATATATA
1 TATATTATTCAT-TTTAAAT-TGT-TTTA
* *
30536207 TATATTATTTATTTCAAATTGTTTTA
1 TATATTATTCATTTTAAATTGTTTTA
* *
30536233 TATGTTATTTATTT
1 TATATTATTCATTT
30536247 CGTTTTTCTT
Statistics
Matches: 118, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
24 3 0.03
25 38 0.32
26 26 0.22
27 28 0.24
28 8 0.07
29 15 0.13
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.59
Consensus pattern (26 bp):
TATATTATTCATTTTAAATTGTTTTA
Found at i:30536564 original size:140 final size:139
Alignment explanation
Indices: 30536312--30537124 Score: 917
Period size: 140 Copynumber: 6.0 Consensus size: 139
30536302 TACAACAAAA
* *
30536312 TAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAATATAC
1 TAGTCCTAAGACGACACTTTTG-GGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
* *
30536377 GCTTTAGCCAACTATTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
65 GCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
30536442 TGGCTTTGTC
130 TGGCTTTGTC
* * *
30536452 TAGTCCTAAGGCGACACTTTTGGGGTGACACTTTCGTAAGTGTTGGGATAGACTTGCCAACATAC
1 TAGTCCTAAGACGACACTTTT-GGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
* ** * *
30536517 GCTTTCGCCAACTCTTTAAATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
65 GCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
*
30536582 TGGCTTTTGTG
130 TGGC-TTTGTC
*
30536593 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
1 TAGTCCTAAGACGACACTTTT-GGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
* * * * *
30536658 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAATGCTTAAATAAGAGT
65 GCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
30536723 TGGCTTTGTC
130 TGGCTTTGTC
* * * *
30536733 CAGTCCTAAGACGACA----T---------TTTCCTAAGTGTTGGGATAGACTTGTCGACATACT
1 TAGTCCTAAGACGACACTTTTGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACG
* * * * * *
30536785 TTTTGGTCAACTTTTTGTAAAAGGGTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTC
66 CTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTT
30536850 GGCTTTGTC
131 GGCTTTGTC
* * * * * * * *
30536859 GA-ACACTATGCCTACACATTTGGGTCAACACTTTCCTAAGTGTTGGAATAGACTTGCCAACATA
1 TAGTC-CTAAGACGACACTTTTGGG-CGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
* **
30536923 CACTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAG
64 CGCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAG
*
30536988 TCGG--TT-T-
129 TTGGCTTTGTC
* * * * *
30536995 T-GTCC--A-A-G--AC-TAT-GCCAACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATG
1 TAGTCCTAAGACGACACTTTTGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACG
* * *
30537051 CTTTGGCCAACTCTTTGTATAA-GATATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGT
66 CTTTGGCCAACTCTTTGTATAAGGGT-TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
*
30537115 TAGCTTTGTC
130 TGGCTTTGTC
30537125 CAATAGTATG
Statistics
Matches: 577, Mismatches: 73, Indels: 56
0.82 0.10 0.08
Matches are distributed among these distances:
125 3 0.01
126 198 0.34
127 1 0.00
128 4 0.01
129 3 0.01
130 1 0.00
135 1 0.00
136 2 0.00
137 1 0.00
138 2 0.00
140 232 0.40
141 129 0.22
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (139 bp):
TAGTCCTAAGACGACACTTTTGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACG
CTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTT
GGCTTTGTC
Found at i:30536843 original size:126 final size:126
Alignment explanation
Indices: 30536620--30537126 Score: 552
Period size: 126 Copynumber: 3.9 Consensus size: 126
30536610 TTTTGGGGCG
*
30536620 ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGGGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
* * * * * *
30536685 TGCGATATGTATGCCTAAGACAATGCTTAAATAAGAGTTGGCTTTGTCCAGTCCTAAGACG
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGACA
* * * * * * *
30536746 ACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATACT-TTTTGGTCAACTTTTTGTAAAAGGG
1 ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA-TGCTTTGGCCAACTCTTTGTATAAGGG
* *
30536810 TTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCGAACACTATGCCTACA
65 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC---CA--GT-CCT--A
*
30536875 CATTTGGGTCA
122 -A-----GACA
* **
30536886 ACACTTTCCTAAGTGTTGGAATAGACTTGCCAACATACACTTTGGCCAACTCTTTGTATAAGGGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
** * * * *
30536951 TGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAGTCGGTTTTGTCCAAG-ACTATGCCA
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC-AGTCCTAAGACA
* *
30537012 ACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAA-GAT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
* * **
30537076 ATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGTTAGCTTTGTCCA
66 -TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCA
30537127 ATAGTATGTC
Statistics
Matches: 318, Mismatches: 45, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
125 3 0.01
126 200 0.63
127 1 0.00
129 2 0.01
131 1 0.00
132 4 0.01
134 3 0.01
135 1 0.00
137 1 0.00
138 1 0.00
140 101 0.32
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (126 bp):
ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGACA
Found at i:30536967 original size:266 final size:267
Alignment explanation
Indices: 30536478--30537124 Score: 815
Period size: 266 Copynumber: 2.4 Consensus size: 267
30536468 CTTTTGGGGT
* * * * *
30536478 GACACTTTCGTAAGTGTTGGGATAGACTTGCCAACATACGCTTTCGCCAACTCTTT-AAATAAGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATACTCTTTGGCCAACTCTTTGTAA-AAGG
* * *
30536542 GTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGT-GTAGTCCTAAGACG
65 GTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGC-TTTGTCGTAGACCTAAGACG
* * * **
30536606 ACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACT
129 ACACATTTGGGGCAACACTTTCCTAAGTGTTGGAATAGACTTGCCAACATACACTTTGGCCAACT
* *
30536671 CTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAA-TGCTTAAATAAGAGTTGGCTTTGTCC-
194 CTTTGCATAAGGGTTGCGATATGCATGCCTAAGACAACT-CTTAAATAAGAGTCGGCTTTGTCCA
*
30536734 AGTCCTAAGAC
258 AG-ACTAAGAC
* * * * *
30536745 GACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATACTTTTTGGTCAACTTTTTGTAAAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATACTCTTTGGCCAACTCTTTGTAAAAGGG
* * * * *
30536810 TTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCG-A-ACACTATGCCTA
66 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCGTAGAC-CTAAGACGA
*
30536873 CACATTTGGGTCAACACTTTCCTAAGTGTTGGAATAGACTTGCCAACATACACTTTGGCCAACTC
130 CACATTTGGGGCAACACTTTCCTAAGTGTTGGAATAGACTTGCCAACATACACTTTGGCCAACTC
* * * * *
30536938 TTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAGTCGGTTTTGTCCAAG
195 TTTGCATAAGGGTTGCGATATGCATGCCTAAGACAACTCTTAAATAAGAGTCGGCTTTGTCCAAG
* *
30537003 ACTATGCC
260 ACTAAGAC
* *
30537011 AACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATA-TGCTTTGGCCAACTCTTTGTATAA-G
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATACT-CTTTGGCCAACTCTTTGTAAAAGG
* * * *
30537074 ATATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGTTAGCTTTGTC
65 GT-TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTC
30537125 CAATAGTATG
Statistics
Matches: 326, Mismatches: 47, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
265 4 0.01
266 225 0.69
267 95 0.29
268 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (267 bp):
GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATACTCTTTGGCCAACTCTTTGTAAAAGGG
TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCGTAGACCTAAGACGAC
ACATTTGGGGCAACACTTTCCTAAGTGTTGGAATAGACTTGCCAACATACACTTTGGCCAACTCT
TTGCATAAGGGTTGCGATATGCATGCCTAAGACAACTCTTAAATAAGAGTCGGCTTTGTCCAAGA
CTAAGAC
Found at i:30537728 original size:26 final size:26
Alignment explanation
Indices: 30537691--30537826 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
30537681 TGATACAAAT
* *
30537691 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
30537717 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
30537743 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
30537769 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
30537795 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
30537821 TGATAA
1 TGATAA
30537827 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:30540548 original size:7 final size:7
Alignment explanation
Indices: 30540520--30540604 Score: 50
Period size: 7 Copynumber: 12.4 Consensus size: 7
30540510 TTTCTTTGGT
*
30540520 TTTAGGG
1 TTTAAGG
*
30540527 TTTAAGA
1 TTTAAGG
*
30540534 TTTGAGG
1 TTTAAGG
30540541 TTTAAGG
1 TTTAAGG
*
30540548 TTTAGGG
1 TTTAAGG
**
30540555 TTTGTGG
1 TTTAAGG
30540562 TTT-AGAG
1 TTTAAG-G
* *
30540569 -TCATGG
1 TTTAAGG
*
30540575 TTTATGG
1 TTTAAGG
30540582 TTTAAGG
1 TTTAAGG
*
30540589 TTTAGGG
1 TTTAAGG
30540596 TTT-AGG
1 TTTAAGG
30540602 TTT
1 TTT
30540605 TTGTAAAAAG
Statistics
Matches: 60, Mismatches: 15, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
6 8 0.13
7 52 0.87
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:30540549 original size:21 final size:21
Alignment explanation
Indices: 30540520--30540565 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
30540510 TTTCTTTGGT
*
30540520 TTTAGGGTTTAAGATTTGAGG
1 TTTAAGGTTTAAGATTTGAGG
* * *
30540541 TTTAAGGTTTAGGGTTTGTGG
1 TTTAAGGTTTAAGATTTGAGG
30540562 TTTA
1 TTTA
30540566 GAGTCATGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.48
Consensus pattern (21 bp):
TTTAAGGTTTAAGATTTGAGG
Found at i:30540556 original size:14 final size:14
Alignment explanation
Indices: 30540520--30540604 Score: 77
Period size: 14 Copynumber: 6.2 Consensus size: 14
30540510 TTTCTTTGGT
*
30540520 TTTAGGGTTTAAGA
1 TTTAGGGTTTAAGG
30540534 TTT-GAGGTTTAAGG
1 TTTAG-GGTTTAAGG
**
30540548 TTTAGGGTTTGTGG
1 TTTAGGGTTTAAGG
* * *
30540562 TTTAGAG-TCATGG
1 TTTAGGGTTTAAGG
*
30540575 TTTATGGTTTAAGG
1 TTTAGGGTTTAAGG
30540589 TTTAGGGTTT-AGG
1 TTTAGGGTTTAAGG
30540602 TTT
1 TTT
30540605 TTGTAAAAAG
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
13 16 0.28
14 40 0.70
15 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTAAGG
Found at i:30541826 original size:35 final size:35
Alignment explanation
Indices: 30541780--30541862 Score: 157
Period size: 35 Copynumber: 2.4 Consensus size: 35
30541770 TCTGCCCTAT
*
30541780 TCCAGCCACTGGTGCATCTGCCGTCGACCACCTGC
1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
30541815 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
30541850 TCCAGCCACTGGT
1 TCCAGCCACTGGT
30541863 ATGTCACGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.14, C:0.43, G:0.22, T:0.20
Consensus pattern (35 bp):
TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
Found at i:30555450 original size:73 final size:73
Alignment explanation
Indices: 30555350--30555724 Score: 405
Period size: 73 Copynumber: 4.9 Consensus size: 73
30555340 TGATTTTCAA
* ** * *
30555350 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTGGTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
30555415 TGTTCATC
66 TGTTCATC
* * * * *
30555423 AAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAAT
30555487 TTCTGGTTTTCAATTTC
63 TTCT-G--TTC-A--TC
*
30555504 TTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
**
30555569 ATTTCTGTTTGTC
61 ATTTCTGTTCATC
*
30555582 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
**
30555647 TGTTTGTC
66 TGTTCATC
* **
30555655 AAAAATCAACTCATATTGCG-GAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAAT
30555718 TTCTGTT
63 TTCTGTT
30555725 TTTCAATTTC
Statistics
Matches: 261, Mismatches: 23, Indels: 35
0.82 0.07 0.11
Matches are distributed among these distances:
71 1 0.00
72 19 0.07
73 125 0.48
74 25 0.10
75 20 0.08
76 1 0.00
78 5 0.02
79 1 0.00
81 4 0.02
83 1 0.00
84 24 0.09
86 33 0.13
87 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTCATC
Found at i:30555729 original size:14 final size:14
Alignment explanation
Indices: 30555710--30555738 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
30555700 TGCTGAGGTC
30555710 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
30555724 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
30555738 T
1 T
30555739 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:30555793 original size:88 final size:87
Alignment explanation
Indices: 30555637--30555819 Score: 253
Period size: 89 Copynumber: 2.1 Consensus size: 87
30555627 GCTGAGGTAA
* * *
30555637 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGGAGGTGAGTTGAGCCTCGG--CACACG
* *
30555702 CTGAGGT-CTTTTCAATTTCTGTT
64 CTGAGGTACTTTTAAATTTCTATT
30555725 TTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC
1 TTTCAATTTCTGTTCGT-AAAAAATCAACTCATATTGCG-GAGGTGAGTTGAGCCTC-GGCACAC
*
30555789 GCTGAGGTATTTTTAAATTTCTATT
63 GCTGAGGTACTTTTAAATTTCTATT
30555814 TTTCAA
1 TTTCAA
30555820 AAATCGACTC
Statistics
Matches: 85, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
88 27 0.32
89 39 0.46
90 17 0.20
91 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (87 bp):
TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGGAGGTGAGTTGAGCCTCGGCACACGCT
GAGGTACTTTTAAATTTCTATT
Found at i:30555917 original size:73 final size:73
Alignment explanation
Indices: 30555724--30556679 Score: 582
Period size: 73 Copynumber: 12.2 Consensus size: 73
30555714 CAATTTCTGT
* * *
30555724 TTTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
30555789 GCTGAGGTA
65 GCTGAGGTA
* * * * *
30555798 TTTTTAAATTTCTATTTTTCAAAAATCGACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACAC
1 -TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
30555863 GCTGAGGTA
65 GCTGAGGTA
* * *
30555872 ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACA
* *
30555937 TGCTGAGGTC
64 CGCTGAGGTA
* ** * * * * *
30555947 TTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGT
1 TTTTCAATTTCTG---------TT-TG-TC-AAAAATCAACTCATATTGCGAGA--G-GTGAGTT
*
30556009 GAGTTGAGCCTCAGGACACGCTGAGGTA
51 GAG-----CCTCGGGACACGCTGAGGTA
* * *
30556037 TTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACAC
1 -TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
30556102 GCTGAGGTA
65 GCTGAGGTA
* * *
30556111 ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACA
* *
30556176 TGCTGAGGTC
64 CGCTGAGGTA
* ** * * * *
30556186 TTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCA-ACT-C-ATATTGTGAGAGGT
1 TTTTCAATTTCTG---------TT-TG-TC-AAAAATCAACTCATATTGCGAGA--G-GTG----
* **
30556248 GAGTTGAGCCTCAGGACATACTGAGGTA
47 -AGTTGAGCCTCGGGACACGCTGAGGTA
* * * *
30556276 TTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACAC
1 -TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
30556341 GCTGAGGTA
65 GCTGAGGTA
* * *
30556350 ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACA
* *
30556415 TGCTGAGGTC
64 CGCTGAGGTA
** * * *
30556425 TTTTCAATTTCTGTTCT-TCAATTTCTGTTTGTAAAAAAAATCA-ACT-CATATTGAGAGAGGTG
1 TTTTCAATTTCTGTT-TGTCAA-----------AAATCAACTCATATTGC-GA--GAG----GTG
*
30556487 AGTTGAGCCTCAGGACACGCTGA-GTA
47 AGTTGAGCCTCGGGACACGCTGAGGTA
* * * * *
30556513 TTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAGGAC
1 -TTTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
30556578 ACGCTGAGGTA
63 ACGCTGAGGTA
* * *
30556589 ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACA
1 TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACA
* *
30556654 CACTGAGGTC
64 CGCTGAGGTA
*
30556664 TTTTCAAATTCTGTTT
1 TTTTCAATTTCTGTTT
30556680 TAATTTCTGC
Statistics
Matches: 685, Mismatches: 114, Indels: 164
0.71 0.12 0.17
Matches are distributed among these distances:
73 195 0.28
74 94 0.14
75 156 0.23
76 4 0.01
79 30 0.04
80 18 0.03
81 7 0.01
82 8 0.01
84 9 0.01
85 9 0.01
86 18 0.03
87 31 0.05
88 3 0.00
89 24 0.04
90 22 0.03
91 40 0.06
92 17 0.02
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTA
Found at i:30555968 original size:14 final size:14
Alignment explanation
Indices: 30555949--30555976 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
30555939 CTGAGGTCTT
30555949 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
30555963 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
30555977 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:30556062 original size:239 final size:238
Alignment explanation
Indices: 30555335--30556688 Score: 2176
Period size: 239 Copynumber: 5.7 Consensus size: 238
30555325 TGATGTTTTT
* *
30555335 ATTTCTGATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGA
1 ATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
** * * ** * * *
30555400 GGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCT
64 GGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT
* * **
30555465 CACACGCTGAGGTATTTTCAATTTCTGGTT-TTCAATTTCT-TT--T--TTAAAATCAACTCATA
129 CACATGCTGAGGTCTTTTCAATTTCT-GTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATA
* *
30555524 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCA
193 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
* *
30555569 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
30555634 TAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCG-GAGGTGAGTTGAGCCTCGGCTCA
66 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
*
30555698 CATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGT-AAAAAAATCAACTCATATTG
131 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTG
30555762 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
196 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
* * * *
30555805 ATTTCTATTTTTCAAAAATCGACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
30555870 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
66 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
30555935 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATT
131 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATT
30556000 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
195 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
* *
30556044 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
30556109 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
66 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
30556174 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATT
131 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATT
* **
30556239 GTGAGAGGTGAGTTGAGCCTCAGGACATACTGAGGTATTTTTAA
195 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
* * *
30556283 ATTTCTATTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
30556348 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
66 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
*
30556413 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTTGTAAAAAAAATCAACTCATATTG
131 CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTG
*
30556478 AGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GTATTTTTAA
196 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
* *
30556520 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
*
30556585 GGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGC
64 GGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGC
** *
30556650 -CACACACTGAGGTCTTTTCAAATTCTGTT-TT-AATTTCTG
128 TCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTG
30556689 CTTTTCAATT
Statistics
Matches: 1058, Mismatches: 50, Indels: 21
0.94 0.04 0.02
Matches are distributed among these distances:
230 3 0.00
231 54 0.05
232 84 0.08
234 12 0.01
235 53 0.05
236 103 0.10
237 96 0.09
238 52 0.05
239 598 0.57
240 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (238 bp):
ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
CATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTG
CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
Done.