Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 120 of 345
Found at i:31934719 original size:31 final size:31
Alignment explanation
Indices: 31934684--31934747 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31934674 CCTTTTCATG
31934684 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
31934715 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
31934746 TT
1 TT
31934748 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:31934990 original size:24 final size:24
Alignment explanation
Indices: 31934939--31935081 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
31934929 ACTTTATCAT
*
31934939 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
31934964 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
31934988 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
31935011 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
31935035 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
31935059 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
31935082 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:31935018 original size:47 final size:48
Alignment explanation
Indices: 31934939--31935080 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
31934929 ACTTTATCAT
* *
31934939 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
31934988 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
31935035 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
31935081 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:31935039 original size:71 final size:72
Alignment explanation
Indices: 31934938--31935081 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
31934928 TACTTTATCA
*
31934938 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
31935003 GCCCTTT
66 GCCCTTT
* * **
31935010 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
31935073 AGCCCTTT
65 AGCCCTTT
31935081 T
1 T
31935082 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:31935156 original size:20 final size:20
Alignment explanation
Indices: 31935131--31935191 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
31935121 TTATGATTAC
31935131 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
31935151 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
31935171 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
31935191 A
1 A
31935192 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:31935266 original size:25 final size:25
Alignment explanation
Indices: 31935234--31935281 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31935224 ATACATAAAC
* * *
31935234 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
31935259 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
31935282 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:31938998 original size:25 final size:25
Alignment explanation
Indices: 31938970--31939020 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
31938960 AATAAAATAA
31938970 TCCCAGAAAAGAGAAGAAAACAAAG
1 TCCCAGAAAAGAGAAGAAAACAAAG
31938995 TCCCAGAAAAGAGAAGAAAACAAAG
1 TCCCAGAAAAGAGAAGAAAACAAAG
31939020 T
1 T
31939021 TAAAATGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.59, C:0.16, G:0.20, T:0.06
Consensus pattern (25 bp):
TCCCAGAAAAGAGAAGAAAACAAAG
Found at i:31939349 original size:30 final size:31
Alignment explanation
Indices: 31939276--31939353 Score: 104
Period size: 30 Copynumber: 2.5 Consensus size: 31
31939266 CTCAACATAG
*
31939276 ACTGGGCCGAAGCCTTTGCATTATTCATGTC
1 ACTGGGCCGAAGCCTTTGCATTATTCATATC
* * *
31939307 ACTAGGCCGAAGCTTTTTCATTA-TCATATC
1 ACTGGGCCGAAGCCTTTGCATTATTCATATC
*
31939337 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
31939354 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 20 0.50
31 20 0.50
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTGCATTATTCATATC
Found at i:31939644 original size:26 final size:26
Alignment explanation
Indices: 31939574--31939644 Score: 110
Period size: 25 Copynumber: 2.8 Consensus size: 26
31939564 CTCTTTTAAT
*
31939574 AACTGGGGCAAAA-CCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
31939599 AACTGGGGC-AAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGATA
31939624 AACTGGGGCAAAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
31939645 GCATTCCCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 3 0.07
25 28 0.67
26 11 0.26
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:31940931 original size:14 final size:15
Alignment explanation
Indices: 31940912--31940941 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
31940902 TCAGCTAGAG
31940912 AAGAAG-AAAGAAAA
1 AAGAAGAAAAGAAAA
31940926 AAGAAGAAAAGAAAA
1 AAGAAGAAAAGAAAA
31940941 A
1 A
31940942 CTATGGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAGAAGAAAAGAAAA
Found at i:31943459 original size:30 final size:29
Alignment explanation
Indices: 31943365--31943466 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
31943355 TATAGTGAAT
* * *
31943365 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
31943394 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
31943422 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
31943452 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
31943467 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:31951849 original size:973 final size:975
Alignment explanation
Indices: 31949960--31951909 Score: 3836
Period size: 973 Copynumber: 2.0 Consensus size: 975
31949950 TAGCTCTGAT
31949960 ACCAATAAAATTGTAACACCCCGAACCCGTGACCGTCGCCAGTGTCGGACACGAGGGGTTAACGG
1 ACCAATAAAATTGTAACACCCCGAACCCGTGACCGTCGCCAGTGTCGGACACGAGGGGTTAACGG
*
31950025 GCCAAATCCTCCAAGGTACCAACCAATTTGGCATTTCCAGACAGGCTGGAAAACTGCGTCACTGT
66 GCCAAATCCTCCAAGGTACCAACCAATTTGGCATTTCCAGACAGGCTGGAAAACTGCATCACTGT
31950090 CGCCTTAAAAATCATATCTCGAGTTCCAAAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATT
131 CGCCTTAAAAATCATATCTCGAGTTCCAAAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATT
31950155 TAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTT
196 TAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTT
31950220 ATTAGTTAAAGTCACCCATGTTACAGGGGTCGACTACACTGACCTTCGCGCATTACAACTTGAAT
261 ATTAGTTAAAGTCACCCATGTTACAGGGGTCGACTACACTGACCTTCGCG-ATTACAACTTGAAT
31950285 ATCATCTCGTACAGAGCTCTAATGCTCATACCGTTTGTTTCTAATGAAACTAGACTCAAAGGGAA
325 ATCATCTCGTACAGAGCTCTAATGCTCATACCGTTTGTTTCTAATGAAACTAGACTCAAAGGGAA
31950350 TCTATTCATATAAGGCATGACTTCTAATTGTTTCTGGATAATTTATGGTAAATTTTCAAAGTCGC
390 TCTATTCATATAAGGCATGACTTCTAATTGTTTCTGGATAATTTATGGTAAATTTTCAAAGTCGC
31950415 GACAGGGGACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATTTCTCAGTATACTG
455 GACAGGGGACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATTTCTCAGTATACTG
31950480 CTCATATGGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGTTCAATTTCATAATTTA
520 CTCATATGGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGTTCAATTTCATAATTTA
31950545 CTCACTATTTAATTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTC
585 CTCACTATTTAATTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTC
31950610 CGCAACAGTTACTGCAGTAGACTATGCCAATTCATGAATCTTTCCTTGGCCTTAATCATCCATCA
650 CGCAACAGTTACTGCAGTAGACTATGCCAATTCATGAATCTTTCCTTGGCCTTAATCATCCATCA
31950675 TACATGACACAAATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATAGGTTC
715 TACATGACACAAATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATAGGTTC
31950740 TAGCATCCCACTCGACGACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTC
780 TAGCATCCCACTCGACGACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTC
31950805 AACAAAATATAATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAATATTT
845 AACAAAATATAATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAATATTT
31950870 CAGCCGGTGTGATGACTTCAACGACGGTTCCGATCACGCAAACAATACGAGTCCGAGAGACCTAA
910 CAGCCGGTGTGATGACTTCAACGACGGTTCCGATCACGCAAACAATACGAGTCCGAGAGACCTAA
31950935 A
975 A
31950936 ACCAATAAAATTGTAACACCCCGAACCCGTGACCGTCGCCAGTGTCGGACACGAGGGGTTAACGG
1 ACCAATAAAATTGTAACACCCCGAACCCGTGACCGTCGCCAGTGTCGGACACGAGGGGTTAACGG
31951001 GCCAAATCCTCCCAAGGTACCAACCAATTTGGCATTTCCAGACAGGCTGG-AAACTGCATCACTG
66 GCCAAATCCT-CCAAGGTACCAACCAATTTGGCATTTCCAGACAGGCTGGAAAACTGCATCACTG
31951065 TCGCCTTAAAAATCATATCTCGAGTTCCAAAACTCGGAAACTGATTCCGTAAATTTTCCCTGAAT
130 TCGCCTTAAAAATCATATCTCGAGTTCCAAAACTCGGAAACTGATTCCGTAAATTTTCCCTGAAT
31951130 TTAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGGT-GGGCCAATTGGTACAGTT
195 TTAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTT
31951194 TATTAGTTAAAGTCACCCATGTTACAGGGGTCGACTACACTGACCTTCGCG-TTACAACTTGAAT
260 TATTAGTTAAAGTCACCCATGTTACAGGGGTCGACTACACTGACCTTCGCGATTACAACTTGAAT
31951258 ATCATCTCGTACAGAGCTCTAATGCTCATA-CGTTTGTTTCTAATGAAACTAGACTCAAAGGGGA
325 ATCATCTCGTACAGAGCTCTAATGCTCATACCGTTTGTTTCTAATGAAACTAGACTCAAA-GGGA
31951322 ATCTATTCATATAAGGCATGACTTCTAATTGTTTCTGGATAATTTATGGTAAATTTTCAAAGTCG
389 ATCTATTCATATAAGGCATGACTTCTAATTGTTTCTGGATAATTTATGGTAAATTTTCAAAGTCG
31951387 CGACAGGGGACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATTTCTCAGTATACT
454 CGACAGGGGACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATTTCTCAGTATACT
31951452 GCTCATATGGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGTTCAATTTCATAATTT
519 GCTCATATGGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGTTCAATTTCATAATTT
31951517 ACTCACTATTTAATTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGT
584 ACTCACTATTTAATTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGT
31951582 CCGCAACAGTTACTGCAGTAGACTATGCCAATTCATGAATCTTTCCTTGGCCTTAATCATCCATC
649 CCGCAACAGTTACTGCAGTAGACTATGCCAATTCATGAATCTTTCCTTGGCCTTAATCATCCATC
31951647 ATACATGACACAAATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATAGGTT
714 ATACATGACACAAATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATAGGTT
31951712 CTAGCATCCCACTCGACGACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTT
779 CTAGCATCCCACTCGACGACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTT
31951777 CAACAAAATATAATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAATATT
844 CAACAAAATATAATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAATATT
31951842 TCAGCCGGTGTGATGACTTCAACGACGGTTCCGATCACGCAAACAATACGAGTCCGAGAGACCTA
909 TCAGCCGGTGTGATGACTTCAACGACGGTTCCGATCACGCAAACAATACGAGTCCGAGAGACCTA
31951907 AA
974 AA
31951909 A
1 A
31951910 TGGGTGACAA
Statistics
Matches: 971, Mismatches: 1, Indels: 7
0.99 0.00 0.01
Matches are distributed among these distances:
972 29 0.03
973 635 0.65
975 69 0.07
976 199 0.20
977 39 0.04
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (975 bp):
ACCAATAAAATTGTAACACCCCGAACCCGTGACCGTCGCCAGTGTCGGACACGAGGGGTTAACGG
GCCAAATCCTCCAAGGTACCAACCAATTTGGCATTTCCAGACAGGCTGGAAAACTGCATCACTGT
CGCCTTAAAAATCATATCTCGAGTTCCAAAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATT
TAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTT
ATTAGTTAAAGTCACCCATGTTACAGGGGTCGACTACACTGACCTTCGCGATTACAACTTGAATA
TCATCTCGTACAGAGCTCTAATGCTCATACCGTTTGTTTCTAATGAAACTAGACTCAAAGGGAAT
CTATTCATATAAGGCATGACTTCTAATTGTTTCTGGATAATTTATGGTAAATTTTCAAAGTCGCG
ACAGGGGACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATTTCTCAGTATACTGC
TCATATGGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGTTCAATTTCATAATTTAC
TCACTATTTAATTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCC
GCAACAGTTACTGCAGTAGACTATGCCAATTCATGAATCTTTCCTTGGCCTTAATCATCCATCAT
ACATGACACAAATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATAGGTTCT
AGCATCCCACTCGACGACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTCA
ACAAAATATAATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAATATTTC
AGCCGGTGTGATGACTTCAACGACGGTTCCGATCACGCAAACAATACGAGTCCGAGAGACCTAAA
Found at i:31952419 original size:30 final size:29
Alignment explanation
Indices: 31952325--31952426 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
31952315 TATAGTGAAT
* * *
31952325 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
31952354 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
31952382 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
31952412 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
31952427 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:31956564 original size:52 final size:49
Alignment explanation
Indices: 31956377--31956569 Score: 173
Period size: 47 Copynumber: 4.0 Consensus size: 49
31956367 TGCACATAGT
* * ** * *
31956377 CACATATCACA-TATCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * * *
31956425 CACATATCACACT--GATGCCATATCCCATATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * *
31956472 CACATATCACA--CCGATGCCATATCCCGGATATGCTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
31956519 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAA
31956570 ATCAGATTTC
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
46 24 0.20
47 52 0.44
48 11 0.09
49 1 0.01
52 30 0.25
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
Found at i:31958756 original size:28 final size:27
Alignment explanation
Indices: 31958712--31958820 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 27
31958702 CTGCACAATC
* *
31958712 GATGTCTT-GCACGCTAAGTGCTATACCG
1 GATGT-TTCGCACACTAAGTGCCAT-CCG
*
31958740 GATGTTTCGCACACTAAGTGCCATCCTC
1 GATGTTTCGCACACTAAGTGCCATCC-G
** *
31958768 GATACTTCGCACACTAAGTGCCATTTCG
1 GATGTTTCGCACACTAAGTGCCA-TCCG
*
31958796 GATGTTTCGCACACTAAGTGTCATC
1 GATGTTTCGCACACTAAGTGCCATC
31958821 ATCAATACTT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 5 0.07
28 60 0.90
29 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (27 bp):
GATGTTTCGCACACTAAGTGCCATCCG
Found at i:31958798 original size:56 final size:56
Alignment explanation
Indices: 31958720--31958899 Score: 240
Period size: 56 Copynumber: 3.2 Consensus size: 56
31958710 TCGATGTCTT
* * ** *
31958720 GCACGCTAAGTGCTATACCGGATGTTTCGCACACTAAGTGCCATCCTCGATACTTC
1 GCACACTAAGTGCCATTTCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
* *
31958776 GCACACTAAGTGCCATTTCGGATGTTTCGCACACTAAGTGTCATCATCAATACTTC
1 GCACACTAAGTGCCATTTCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
** *
31958832 ATACACT--GTGTCATTTCGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTC
1 GCACACTAAGTGCCATTTCGGATGT-TTCGCACACTAAGTGCCATCCTCAATACTTC
31958886 GCACACTAAGTGCC
1 GCACACTAAGTGCC
31958900 GTTCGTTTGG
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
54 46 0.43
55 2 0.02
56 58 0.55
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (56 bp):
GCACACTAAGTGCCATTTCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
Found at i:31958880 original size:54 final size:55
Alignment explanation
Indices: 31958738--31958899 Score: 220
Period size: 54 Copynumber: 2.9 Consensus size: 55
31958728 AGTGCTATAC
* *
31958738 CGGATGTTTCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTT
1 CGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCACACACT-AGTGCCATTT
* * * *
31958794 CGGATGTTTCGCACACTAAGTGTCATCATCAATACTTCATACACT-GTGTCATTT
1 CGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCACACACTAGTGCCATTT
*
31958848 CGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTCGCACACTAAGTGCC
1 CGGATGT-TTCGCACACTAAGTGCCATCCTCAATACTTCACACACT-AGTGCC
31958900 GTTCGTTTGG
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
54 46 0.50
55 2 0.02
56 44 0.48
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (55 bp):
CGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCACACACTAGTGCCATTT
Found at i:31958898 original size:28 final size:28
Alignment explanation
Indices: 31958745--31958899 Score: 140
Period size: 28 Copynumber: 5.6 Consensus size: 28
31958735 TACCGGATGT
31958745 TTCGCACACTAAGTGCCATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* **
31958773 TTCGCACACTAAGTGCCAT-TTCGGATGT
1 TTCGCACACTAAGTGCCATCCTC-GATAC
* * *
31958801 TTCGCACACTAAGTGTCATCATCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
** * * *
31958829 TTCATACACT--GTGTCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-GAT-AC
*
31958856 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
31958883 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
31958900 GTTCGTTTGG
Statistics
Matches: 100, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
25 2 0.02
26 14 0.14
27 8 0.08
28 72 0.72
29 4 0.04
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:31962650 original size:52 final size:49
Alignment explanation
Indices: 31962463--31962655 Score: 173
Period size: 47 Copynumber: 4.0 Consensus size: 49
31962453 TGCACATAGT
* * ** * *
31962463 CACATATCACA-TATCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * * *
31962511 CACATATCACACT--GATGCCATATCCCATATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * *
31962558 CACATATCACA--CCGATGCCATATCCCGGATATGCTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
31962605 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAA
31962656 ATCAGATTTC
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
46 24 0.20
47 52 0.44
48 11 0.09
49 1 0.01
52 30 0.25
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
Found at i:31968697 original size:30 final size:31
Alignment explanation
Indices: 31968627--31968709 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
31968617 TCAATCTCAA
31968627 CATAT-ACTGGGCCGAAGCCTTTGCATTACT
1 CATATCACTGGGCCGAAGCCTTTGCATTACT
* *
31968657 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTACT
31968687 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
31968710 ACTATAAACG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 27 0.55
31 22 0.45
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTACT
Found at i:31969000 original size:26 final size:25
Alignment explanation
Indices: 31968930--31969000 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
31968920 CTCTTTTAAT
*
31968930 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
31968955 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
31968980 AACTGGGGCAAAAGCCCTTTT
1 AACTGGGGC-AAAGCCCTTTT
31969001 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 32 0.74
26 11 0.26
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:31970430 original size:31 final size:31
Alignment explanation
Indices: 31970392--31970486 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
31970382 CCTTTTCATA
*
31970392 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
31970423 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
31970454 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
31970485 TT
1 TT
31970487 ACTGTAAATG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:31970729 original size:24 final size:24
Alignment explanation
Indices: 31970678--31970820 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
31970668 GCTTTATCAT
*
31970678 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
31970703 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
31970727 ATAACTAGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
31970750 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
31970774 ATAACTGGGGCATAATCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
31970798 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
31970821 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
23 22 0.21
24 73 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:31970755 original size:47 final size:48
Alignment explanation
Indices: 31970692--31970819 Score: 186
Period size: 47 Copynumber: 2.7 Consensus size: 48
31970682 CTGGAGGCCT
*
31970692 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTAGGGCATA
** *
31970741 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTAGGGCATA
* *
31970788 ATCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTT
31970820 TTCACTTCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
47 42 0.58
48 27 0.37
49 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTAGGGCATA
Found at i:31970781 original size:71 final size:72
Alignment explanation
Indices: 31970677--31970820 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 72
31970667 TGCTTTATCA
*
31970677 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATAA
31970742 GCCCTTT
66 GCCCTTT
* * * ** *
31970749 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAATCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
31970812 AGCCCTTT
65 AGCCCTTT
31970820 T
1 T
31970821 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
71 51 0.80
72 13 0.20
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATAA
GCCCTTT
Found at i:31970895 original size:20 final size:20
Alignment explanation
Indices: 31970870--31970930 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
31970860 TTATGATTAC
31970870 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
31970890 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
31970910 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
31970930 A
1 A
31970931 CCACATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:31971005 original size:25 final size:25
Alignment explanation
Indices: 31970973--31971020 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31970963 ATACATAAAC
* * *
31970973 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
31970998 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
31971021 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:31974678 original size:25 final size:25
Alignment explanation
Indices: 31974633--31974728 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 25
31974623 TACGATAAAC
* * *
31974633 CAACTTATACT-TTCTCAACTTCTT
1 CAACTTATATTCTTCTGAACTTATT
*
31974657 CAACTTATATTCTTCTAAACTTATT
1 CAACTTATATTCTTCTGAACTTATT
* *
31974682 CAATTTCTATTCTTCTGAACTTATT
1 CAACTTATATTCTTCTGAACTTATT
* * *
31974707 CAATTTCTATTCTTTTGAACTT
1 CAACTTATATTCTTCTGAACTT
31974729 CTCTAATTTC
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 10 0.16
25 54 0.84
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.50
Consensus pattern (25 bp):
CAACTTATATTCTTCTGAACTTATT
Found at i:31974739 original size:25 final size:25
Alignment explanation
Indices: 31974644--31974728 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 25
31974634 AACTTATACT
* * * *
31974644 TTCTCAACTTCTTCAACTTATATTC
1 TTCTGAACTTATTCAATTTCTATTC
*
31974669 TTCTAAACTTATTCAATTTCTATTC
1 TTCTGAACTTATTCAATTTCTATTC
31974694 TTCTGAACTTATTCAATTTCTATTC
1 TTCTGAACTTATTCAATTTCTATTC
*
31974719 TTTTGAACTT
1 TTCTGAACTT
31974729 CTCTAATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.25, C:0.21, G:0.02, T:0.52
Consensus pattern (25 bp):
TTCTGAACTTATTCAATTTCTATTC
Found at i:31975040 original size:126 final size:125
Alignment explanation
Indices: 31974810--31975486 Score: 740
Period size: 126 Copynumber: 5.4 Consensus size: 125
31974800 CAGGATGTAC
* * ** * * * *
31974810 TGTAGAAAAACAA-CATCAAGGTGGGAGAATTTCTCAGTACTTTTGCTGACAGTGGATCCTGCTT
1 TGTAGAAAAA-AAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTT
* *
31974874 GACGCATTTTTTACCCTATTTTTTCAGAACCATCTTCTCAAAACTATTTTTTCAGAAACTGA
65 GAAGCATTTTTTACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACT-A
* * * *
31974936 TGTATAAAAAAAGTGTCTAGTTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTG
1 TGTAGAAAAAAAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTG
* * *
31975001 AAGCTTTTTTTACCCTATGTTTTCAGAACCATCTTCTCAAAATTATTTTTTTCAGAAAATA
66 AAGCATTTTTTACCCTATTTTTTCAGAACCATCTTCTCAAAATTA-TTTTTTCAGAAACTA
* * * * * *
31975062 CTGTAGAAAAAGAGCATCCATGTGTGAGC-TTTTTCAATACTTTTGCT-AACAGTGCATCTTGCT
1 -TGTAGAAAAAAAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGAA-AGTGCATCATGCT
* * * * *
31975125 TGAAGCGTTTTTTACCCTA-TTTTTCAGAACCATCTTCTAAAAATTATTTTTTCAAAAATTGC
64 TGAAGCATTTTTTACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACT-A
* * *
31975187 TATAGAAAAAGAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTACTGAAAGTGCATCATGCTTG
1 TGTAGAAAAAAAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTG
* * *
31975252 AAGCATTTTTTACCCTATCTTTTCAGAACTATCTTCTGAAAATTATTTTTTCAGAAACTA
66 AAGCATTTTTTACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTA
** * * * * *
31975312 CCATA-AAAGAAGAA-CGTCCAGGTGGGAGATTTTTTCAGTACTTTTGCTGACAGTGAATCCTAC
1 -TGTAGAAA-AA-AAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGC
* * * * *
31975375 TTGAAGCGTTTTTAACCTCT-TTTTTTTATAACCATCTTCTCAAAATTATTTTTTCAAAAACTA
63 TTGAAGCATTTTTTACC-CTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTA
* * ** *
31975438 CTGTAG-AAAATAGCATCCACCTGGGAGCTTTTTTTAGTACTTTTGCTGA
1 -TGTAGAAAAAAAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGA
31975487 TTGAGAAAAA
Statistics
Matches: 467, Mismatches: 70, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
124 37 0.08
125 111 0.24
126 283 0.61
127 36 0.08
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (125 bp):
TGTAGAAAAAAAGCGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTG
AAGCATTTTTTACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTA
Found at i:31975296 original size:251 final size:251
Alignment explanation
Indices: 31974821--31975486 Score: 861
Period size: 251 Copynumber: 2.6 Consensus size: 251
31974811 GTAGAAAAAC
* * * * * * *
31974821 AACATCAAGGTGGGAGAATTTCTCAGTACTTTTGCTGACAGTGGATCCTGCTTGACGCATTTTTT
1 AACATCCAGGTGGGAGACTTTTTCAATACTTTTGCTGACAGTGAATCCTGCTTGAAGCGTTTTTT
* * * * *
31974886 ACCCTATTTTTTCAGAACCATCTTCTCAAAACTATTTTTTCAGAAACTGATGTATAAAAAAAGTG
66 ACCCTA-TTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAAAAACTGCTGTAGAAAAAAAGCG
* * *
31974951 TCTAGTTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTGAAGCTTTTTTTACCC
130 TCCAGCTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTGAAGCATTTTTTACCC
* **
31975016 TATGTTTTCAGAACCATCTTCTCAAAATTATTTTTTTCAGAAAATACTGTAGAAA-AAG
195 TATCTTTTCAGAACCATCTTCTCAAAATTA-TTTTTTCAGAAAATACCATA-AAAGAAG
* * * * * *
31975074 AGCATCCATGTGTGAG-CTTTTTCAATACTTTTGCTAACAGTGCATCTTGCTTGAAGCGTTTTTT
1 AACATCCAGGTGGGAGACTTTTTCAATACTTTTGCTGACAGTGAATCCTGCTTGAAGCGTTTTTT
* * * *
31975138 ACCCTATTTTTCAGAACCATCTTCTAAAAATTATTTTTTCAAAAATTGCTATAGAAAAAGAGCGT
66 ACCCTATTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAAAAACTGCTGTAGAAAAAAAGCGT
* *
31975203 CCAGGTGGGAGCTTTTTTCAGTACTTTTACTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCT
131 CCAGCTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCT
* * *
31975268 ATCTTTTCAGAACTATCTTCTGAAAATTATTTTTTCAGAAACTACCATAAAAGAAG
196 ATCTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAATACCATAAAAGAAG
* * * * *
31975324 AACGTCCAGGTGGGAGATTTTTTCAGTACTTTTGCTGACAGTGAATCCTACTTGAAGCGTTTTTA
1 AACATCCAGGTGGGAGACTTTTTCAATACTTTTGCTGACAGTGAATCCTGCTTGAAGCGTTTTTT
* * * * * *
31975389 ACCTCTTTTTTTTATAACCATCTTCTCAAAATTATTTTTTCAAAAACTACTGTAG-AAAATAGCA
66 ACC-CTATTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAAAAACTGCTGTAGAAAAAAAGCG
* *
31975453 TCCACCTGGGAGCTTTTTTTAGTACTTTTGCTGA
130 TCCAGCTGGGAGCTTTTTTCAGTACTTTTGCTGA
31975487 TTGAGAAAAA
Statistics
Matches: 355, Mismatches: 55, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
249 3 0.01
250 32 0.09
251 218 0.61
252 90 0.25
253 12 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (251 bp):
AACATCCAGGTGGGAGACTTTTTCAATACTTTTGCTGACAGTGAATCCTGCTTGAAGCGTTTTTT
ACCCTATTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAAAAACTGCTGTAGAAAAAAAGCGT
CCAGCTGGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCT
ATCTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAATACCATAAAAGAAG
Found at i:31975557 original size:377 final size:374
Alignment explanation
Indices: 31974828--31975559 Score: 769
Period size: 377 Copynumber: 1.9 Consensus size: 374
31974818 AACAACATCA
* * * * *
31974828 AGGTGGGAGAATTTCTCAGTACTTTTGCTGACAGTGGATCCTGCTTGACGCATTTTTTACCCTAT
1 AGGTGGGAGAATTTCTCAGTACTTTTACTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCTAT
* ** ** * *
31974893 TTTTTCAGAACCATCTTCTCAAAACTATTTTTTCAGAAACTGATGTATAAAAAAAGTGTCTAGTT
66 CTTTTCAGAACCATCTTCTCAAAACTATTTTTTCAGAAACTGATCCATAAAAAAAACGTCCAGGT
* * * * *
31974958 GGGAGCTTTTTTCAGTACTTTTGCTGAAAGTGCATCATGCTTGAAGCTTTTTTTACCCTATGTTT
131 GGGAGATTTTTTCAGTACTTTTGCTGAAAGTGAATCATACTTGAAGCGTTTTTAACCCTATGTTT
** *
31975023 TCAGAACCATCTTCTCAAAATTATTTTTTTCAGAAAATACTGTAGAAAAAGAGCATCCATGTGTG
196 TCAGAACCATCTTCTCAAAATTATTTTTTTCAGAAAATACTGTAGAAAAAGAGCATCCACCTGGG
* * ********* * ** * ***
31975088 AGCTTTTTCAATACTTTTGCTAACAGTGCATCTTGCTTGAAGCGTTTTTTACCCTATTTTTCAGA
261 AGCTTTTTCAATACTTTTGCTAACAGAGAAAAAAAAACAAAGCATTCGTCAAAATATTTTTCAGA
*
31975153 ACCATCTTCTAAAAATTATTTTTTCAAAAATTGCTATAGAAAAAGAGCGTCC
326 ACCATC-TCTAAAAACTA--TTTTCAAAAATTGCTATAGAAAAAGAGCGTCC
** *
31975205 AGGTGGGAGCTTTTTTCAGTACTTTTACTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCTAT
1 AGGTGGGAGAATTTCTCAGTACTTTTACTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCTAT
* * *
31975270 CTTTTCAGAACTATCTTCTGAAAATTATTTTTTCAGAAACT-A-CCATAAAAGAAGAACGTCCAG
66 CTTTTCAGAACCATCTTCTCAAAACTATTTTTTCAGAAACTGATCCATAAAA-AA-AACGTCCAG
* * *
31975333 GTGGGAGATTTTTTCAGTACTTTTGCTGACAGTGAATCCTACTTGAAGCGTTTTTAACCTCT-TT
129 GTGGGAGATTTTTTCAGTACTTTTGCTGAAAGTGAATCATACTTGAAGCGTTTTTAACC-CTATG
* * *
31975397 TTTTTATAACCATCTTCTCAAAATTA-TTTTTTCA-AAAACTACTGTAG-AAAATAGCATCCACC
193 TTTTCAGAACCATCTTCTCAAAATTATTTTTTTCAGAAAA-TACTGTAGAAAAAGAGCATCCACC
* * * **
31975459 TGGGAGCTTTTTTTAGTACTTTTGCTGATTGAGAAAAAAAAACAAAGTTCATCTCGTCAAAATAA
257 TGGGAGC-TTTTTCAATACTTTTGCTAACAGAGAAAAAAAAACAAAG--CAT-TCGTCAAAAT-A
*
31975524 TTTTTTCAGAACTCATC-CTTAAAACTA-TTTCAAAAA
317 -TTTTTCAGAAC-CATCTCTAAAAACTATTTTCAAAAA
31975560 CCCTAAAACC
Statistics
Matches: 287, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
375 28 0.10
376 42 0.15
377 185 0.64
378 4 0.01
379 4 0.01
380 9 0.03
381 11 0.04
382 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (374 bp):
AGGTGGGAGAATTTCTCAGTACTTTTACTGAAAGTGCATCATGCTTGAAGCATTTTTTACCCTAT
CTTTTCAGAACCATCTTCTCAAAACTATTTTTTCAGAAACTGATCCATAAAAAAAACGTCCAGGT
GGGAGATTTTTTCAGTACTTTTGCTGAAAGTGAATCATACTTGAAGCGTTTTTAACCCTATGTTT
TCAGAACCATCTTCTCAAAATTATTTTTTTCAGAAAATACTGTAGAAAAAGAGCATCCACCTGGG
AGCTTTTTCAATACTTTTGCTAACAGAGAAAAAAAAACAAAGCATTCGTCAAAATATTTTTCAGA
ACCATCTCTAAAAACTATTTTCAAAAATTGCTATAGAAAAAGAGCGTCC
Found at i:31975665 original size:27 final size:28
Alignment explanation
Indices: 31975633--31975687 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
31975623 AAAAACCCTA
* *
31975633 TAAAAAACATAAACCTTAATTTATTTTT
1 TAAAATACATAAACCTTAATTGATTTTT
* *
31975661 TAAAATCCCTAAACCTTAATTGATTTT
1 TAAAATACATAAACCTTAATTGATTTT
31975688 CTCCAAAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.02, T:0.42
Consensus pattern (28 bp):
TAAAATACATAAACCTTAATTGATTTTT
Found at i:31976064 original size:18 final size:18
Alignment explanation
Indices: 31976024--31976057 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31976014 CCTTTTTTAG
31976024 GAAAATAATAGAAAATAA
1 GAAAATAATAGAAAATAA
*
31976042 CAAAATAATA-AAAATA
1 GAAAATAATAGAAAATA
31976058 TTGAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (18 bp):
GAAAATAATAGAAAATAA
Found at i:31978216 original size:38 final size:38
Alignment explanation
Indices: 31978171--31978301 Score: 208
Period size: 38 Copynumber: 3.4 Consensus size: 38
31978161 ACTTTAAGCT
* *
31978171 CAGATATAATACCAGCACTAGGCCTGCGGGATTTAACC
1 CAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
31978209 CAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
1 CAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
31978247 CAGATATAATACCAGCACGAAGCCTACGGGATTTAACC
1 CAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
* * *
31978285 CGGATATATTTCCAGCA
1 CAGATATAATACCAGCA
31978302 TATAGCCTAC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 87 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
CAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
Found at i:31978312 original size:38 final size:38
Alignment explanation
Indices: 31978141--31978301 Score: 205
Period size: 38 Copynumber: 4.2 Consensus size: 38
31978131 GAATCCAGTC
* * * *
31978141 ACCAGCACAAAACCTACGAGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTACGGGA-TTTAA-CCCAGATATAAT
* * *
31978181 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTACGGGATTTAACCCAGATATAAT
*
31978219 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTACGGGATTTAACCCAGATATAAT
* *
31978257 ACCAGCACGAAGCCTACGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTACGGGATTTAACCCAGATATAAT
*
31978295 TCCAGCA
1 ACCAGCA
31978302 TATAGCCTAC
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
38 88 0.81
39 5 0.05
40 16 0.15
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTACGGGATTTAACCCAGATATAAT
Found at i:31982214 original size:51 final size:51
Alignment explanation
Indices: 31982109--31982214 Score: 133
Period size: 51 Copynumber: 2.1 Consensus size: 51
31982099 CTACCACATA
*
31982109 ACATGCAACACATCCATAATGAACTCAAACCTCTCAAAGAGCTCGAATGTT
1 ACATGCAACACATCCATAATGAACTCAAACCTCTCAAAGAGCTCGAATGCT
* ** * * *
31982160 ACATG-AATCACATCCATCATGAACTTGAACCTCTCAACGAGCTTGGATGCT
1 ACATGCAA-CACATCCATAATGAACTCAAACCTCTCAAAGAGCTCGAATGCT
31982211 ACAT
1 ACAT
31982215 ACCTCACGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.04
51 45 0.96
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (51 bp):
ACATGCAACACATCCATAATGAACTCAAACCTCTCAAAGAGCTCGAATGCT
Found at i:31991244 original size:6 final size:6
Alignment explanation
Indices: 31991235--31991260 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
31991225 AAACAGAACA
31991235 GAAAGT GAAAGT GAAAGT GAAAGT GA
1 GAAAGT GAAAGT GAAAGT GAAAGT GA
31991261 TCCGAGATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15
Consensus pattern (6 bp):
GAAAGT
Found at i:31995950 original size:25 final size:25
Alignment explanation
Indices: 31995921--31995968 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31995911 TTATACCATG
* * *
31995921 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
31995946 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
31995969 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:31996037 original size:20 final size:20
Alignment explanation
Indices: 31996012--31996070 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
31996002 TAAATATGGT
31996012 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
31996032 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
31996052 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
31996071 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:31996214 original size:47 final size:47
Alignment explanation
Indices: 31996121--31996244 Score: 196
Period size: 47 Copynumber: 2.6 Consensus size: 47
31996111 GAGGAAGTGA
31996121 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
31996169 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
*
31996216 GAAAGGGCTT-TGGCCCCAGTTATTAAAAG
1 AAAAGGGCTTAT-GCCCCAGTTA-TAAAAG
31996245 AGTCTAGGCC
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
46 1 0.01
47 42 0.58
48 29 0.40
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:31996254 original size:24 final size:24
Alignment explanation
Indices: 31996121--31996244 Score: 198
Period size: 24 Copynumber: 5.2 Consensus size: 24
31996111 GAGGAAGTGA
*
31996121 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
31996145 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
31996169 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
31996192 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
31996216 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
31996240 AAAAG
1 AAAAG
31996245 AGTCTAGGCC
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
23 23 0.24
24 72 0.76
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:31996490 original size:31 final size:31
Alignment explanation
Indices: 31996455--31996518 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
31996445 CGTTTACAGT
31996455 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
31996486 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
31996517 AA
1 AA
31996519 TATGAAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:31996517 original size:7 final size:7
Alignment explanation
Indices: 31996505--31996532 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
31996495 GGCCCAGTAT
31996505 TATGAAA
1 TATGAAA
31996512 TATGAAA
1 TATGAAA
31996519 TATGAAA
1 TATGAAA
31996526 TATGAAA
1 TATGAAA
31996533 AGGGCTACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:32003924 original size:51 final size:51
Alignment explanation
Indices: 32003848--32003953 Score: 151
Period size: 51 Copynumber: 2.1 Consensus size: 51
32003838 CTACCACATA
* *
32003848 ACATGTAACACATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGTT
1 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
* * *
32003899 ACATG-AATCACATCTATCATGAACTCGGACCTCTCAACGAGCTTGGATGCT
1 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
32003950 ACAT
1 ACAT
32003954 ACCTCACGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 2 0.04
51 47 0.96
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
Found at i:32008085 original size:40 final size:39
Alignment explanation
Indices: 32008028--32008212 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
32008018 ATTAAATGAT
* * *
32008028 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
32008068 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
32008108 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
32008148 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
32008188 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
32008213 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:32008164 original size:80 final size:80
Alignment explanation
Indices: 32008027--32008233 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
32008017 AATTAAATGA
* * ** * *
32008027 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
32008092 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
32008105 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
32008170 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
32008187 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
32008234 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:32008218 original size:40 final size:39
Alignment explanation
Indices: 32008026--32008233 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
32008016 CAATTAAATG
* * ** *
32008026 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
32008066 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
32008106 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
32008146 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
32008186 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
32008226 ATATCCGG
1 ATATCCGG
32008234 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:32016119 original size:40 final size:40
Alignment explanation
Indices: 32015999--32016203 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
32015989 ATTAAATGAT
* * ** * *
32015999 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * *
32016039 ATCC-GGTTAAGACCCGAAGGCAATT-ATGCTAG-TGACTAA
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTAA
32016078 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * **
32016118 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * *
32016158 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
32016198 ATCCGG
1 ATCCGG
32016204 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.22
40 107 0.76
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
Found at i:32016168 original size:80 final size:78
Alignment explanation
Indices: 32015998--32016203 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 78
32015988 AATTAAATGA
* * ** * *
32015998 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCC-GGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
32016062 TTATGCTAGTGAC
66 TTATGCAAGTGAC
* *
32016075 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
32016140 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGT-G-AC
* * *
32016157 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
32016204 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
79 38 0.35
80 67 0.61
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTGAC
Found at i:32019381 original size:29 final size:29
Alignment explanation
Indices: 32019339--32019417 Score: 149
Period size: 29 Copynumber: 2.7 Consensus size: 29
32019329 TATATATGTG
32019339 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
32019368 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
32019397 AACTATCGAGCACTAAGTGTG
1 AATTATCGAGCACTAAGTGTG
32019418 AGATCTCATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:32019494 original size:71 final size:71
Alignment explanation
Indices: 32019376--32019533 Score: 248
Period size: 71 Copynumber: 2.2 Consensus size: 71
32019366 AAAATTATCG
* *
32019376 AGCACTAAGTGTGCGAAGTAAAACTATCGAGCACTAAGTGTGAGATCTCATTGCATTGCGAGTTA
1 AGCACTAAGTGTGCGAAGTAAAACGATCAAGCACTAAGTGTGAGATCTCATTGCATTGCGAGTTA
32019441 AATAAT
66 AATAAT
* *
32019447 AGCACTAAGTGTGC-AGAGTAAAACGATCAAGCACTAAGTGTGCGATCTCATTTCATTGCGAGTT
1 AGCACTAAGTGTGCGA-AGTAAAACGATCAAGCACTAAGTGTGAGATCTCATTGCATTGCGAGTT
32019511 AAATAAT
65 AAATAAT
*
32019518 -GCACTAACTGTGCGAA
1 AGCACTAAGTGTGCGAA
32019534 TACAACAAGT
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
70 14 0.17
71 66 0.82
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (71 bp):
AGCACTAAGTGTGCGAAGTAAAACGATCAAGCACTAAGTGTGAGATCTCATTGCATTGCGAGTTA
AATAAT
Found at i:32021622 original size:54 final size:54
Alignment explanation
Indices: 32021564--32021667 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
32021554 TCACTTTGTT
32021564 AAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCATAAATTTCAAACAAC
1 AAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCATAAATTTCAAACAAC
32021618 AAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCATAAATTTCAAA
1 AAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCATAAATTTCAAA
32021668 TTTTCATCAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.37, C:0.21, G:0.04, T:0.38
Consensus pattern (54 bp):
AAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCATAAATTTCAAACAAC
Found at i:32025789 original size:25 final size:25
Alignment explanation
Indices: 32025761--32025808 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32025751 TTATACCATG
* * *
32025761 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
32025786 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32025809 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:32025877 original size:20 final size:20
Alignment explanation
Indices: 32025852--32025910 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
32025842 TAAATATGGT
*
32025852 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
32025872 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
32025892 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
32025911 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:32025992 original size:23 final size:23
Alignment explanation
Indices: 32025962--32026104 Score: 250
Period size: 23 Copynumber: 6.1 Consensus size: 23
32025952 AGGAAGTGCA
32025962 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
32025985 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
32026008 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
32026032 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
32026055 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
32026078 GAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
32026102 AAA
1 AAA
32026105 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
23 71 0.62
24 44 0.38
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:32026040 original size:24 final size:23
Alignment explanation
Indices: 32025961--32026126 Score: 226
Period size: 23 Copynumber: 7.0 Consensus size: 23
32025951 GAGGAAGTGC
32025961 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
32025984 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
32026007 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
32026030 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
32026054 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
32026078 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
32026102 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32026126 A
1 A
32026127 TGATAAAGCA
Statistics
Matches: 131, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
23 66 0.50
24 55 0.42
25 10 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:32026053 original size:47 final size:46
Alignment explanation
Indices: 32025962--32026126 Score: 242
Period size: 47 Copynumber: 3.5 Consensus size: 46
32025952 AGGAAGTGCA
*
32025962 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
32026008 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
* *
32026055 AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
*
32026102 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
32026127 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
46 22 0.20
47 66 0.61
48 11 0.10
49 10 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:32026352 original size:31 final size:31
Alignment explanation
Indices: 32026317--32026380 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32026307 CGTTTACAGT
32026317 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32026348 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32026379 AA
1 AA
32026381 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32030327 original size:8 final size:8
Alignment explanation
Indices: 32030292--32030327 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
32030282 TAAAGCGATA
32030292 AAATGCCG
1 AAATGCCG
*
32030300 AAAAGCCG
1 AAATGCCG
*
32030308 AAAAGCCG
1 AAATGCCG
32030316 AAATGCCG
1 AAATGCCG
32030324 AAAT
1 AAAT
32030328 TCTGGCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.08
Consensus pattern (8 bp):
AAATGCCG
Found at i:32030778 original size:25 final size:25
Alignment explanation
Indices: 32030750--32030797 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32030740 TTATACCATG
* * *
32030750 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
32030775 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32030798 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:32030866 original size:20 final size:20
Alignment explanation
Indices: 32030841--32030899 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
32030831 TAAATATGGT
*
32030841 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
32030861 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
32030881 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
32030900 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:32030981 original size:23 final size:23
Alignment explanation
Indices: 32030951--32031115 Score: 278
Period size: 23 Copynumber: 7.1 Consensus size: 23
32030941 AGGAAGTGCA
32030951 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
32030974 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
32030997 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
32031021 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
32031045 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
32031068 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
32031090 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
32031113 AAA
1 AAA
32031116 AGAGGCTAGG
Statistics
Matches: 137, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
22 21 0.15
23 70 0.51
24 46 0.34
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:32031029 original size:24 final size:23
Alignment explanation
Indices: 32030950--32031137 Score: 263
Period size: 23 Copynumber: 8.0 Consensus size: 23
32030940 GAGGAAGTGC
32030950 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
32030973 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
32030996 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
32031019 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
32031043 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
32031067 TAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
32031089 TAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
32031113 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32031137 A
1 A
32031138 TGATAAAGCA
Statistics
Matches: 153, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
22 21 0.14
23 65 0.42
24 57 0.37
25 10 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:32031133 original size:94 final size:94
Alignment explanation
Indices: 32030949--32031136 Score: 317
Period size: 94 Copynumber: 2.0 Consensus size: 94
32030939 GGAGGAAGTG
32030949 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
*
32031014 GTTATCAAAAGGGCTTATGCCCCAGTTAT
66 GTTATCAAAAGGGCTTAGGCCCCAGTTAT
*
32031043 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTTTGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
*
32031107 GTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
66 GTTATCAAAAG-GGCTTAGGCC-CCAGTTAT
32031137 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
93 41 0.46
94 48 0.54
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (94 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GTTATCAAAAGGGCTTAGGCCCCAGTTAT
Found at i:32031365 original size:31 final size:31
Alignment explanation
Indices: 32031327--32031390 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32031317 CCGTTACAGT
32031327 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32031358 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32031389 AA
1 AA
32031391 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32034173 original size:43 final size:43
Alignment explanation
Indices: 32034118--32034245 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
32034108 ATATCGTACA
* *
32034118 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTA-ATA-ACATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACG-AGA-ACACATATCG
* *
32034161 ATGCCACTGTCCCAAACAAGGTCTTACACGAGAACACATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAGAACACATATCG
* * *
32034204 ATGCCAATGTCCCAGACATGGTCTTATACAAGAACACATATC
1 ATGCCACTGTCCCAGACATGGTCTTACACGAGAACACATATC
32034246 AGAAATCCTA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 4 0.05
43 69 0.95
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAGAACACATATCG
Found at i:32041703 original size:29 final size:28
Alignment explanation
Indices: 32041661--32041717 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
32041651 AAGATTTTTG
32041661 AGGACAAAAATCCCTAAAGGGGGGAGAGT
1 AGGACAAAAATCCCTAAA-GGGGGAGAGT
*
32041690 AGGACGAAAATCCCTAAAGGGGGAGAGT
1 AGGACAAAAATCCCTAAAGGGGGAGAGT
32041718 TGTAACAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.40, C:0.14, G:0.35, T:0.11
Consensus pattern (28 bp):
AGGACAAAAATCCCTAAAGGGGGAGAGT
Found at i:32044521 original size:40 final size:40
Alignment explanation
Indices: 32044421--32044556 Score: 175
Period size: 40 Copynumber: 3.4 Consensus size: 40
32044411 ATTGGTTATT
* * * *
32044421 TATGGCACATACTGTGCGATACGACATAACTTCGGCTATA
1 TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
32044461 TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
* * * * *
32044501 TATGGCACTTAGTGTGCGATTTGAGAGAGCTTCGACTATG
1 TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
32044541 TAT-GCAACTTAGTGTG
1 TATGGC-ACTTAGTGTG
32044557 TGAGATATCG
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.02
40 84 0.98
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (40 bp):
TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
Found at i:32048849 original size:46 final size:46
Alignment explanation
Indices: 32048799--32048974 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
32048789 TGGTTGAGCA
32048799 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32048845 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32048890 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32048938 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32048975 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32048955 original size:93 final size:93
Alignment explanation
Indices: 32048796--32048967 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32048786 GGATGGTTGA
* *
32048796 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32048861 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32048889 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32048954 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32048968 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32056345 original size:46 final size:46
Alignment explanation
Indices: 32056286--32056461 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
32056276 TGGTTGAGCA
* *
32056286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
32056332 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
32056377 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
32056425 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32056462 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 61 0.56
47 29 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:32056442 original size:93 final size:93
Alignment explanation
Indices: 32056283--32056454 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
32056273 GGATGGTTGA
* * * * *
32056283 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32056348 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32056376 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32056441 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32056455 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32064024 original size:48 final size:48
Alignment explanation
Indices: 32063953--32064048 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
32063943 TGTAATCATG
*
32063953 TAACAAGACACTTATCCGAGCTAATTAAGAAACTCATAAGAGTTTTTA
1 TAACAAGACACTTATCCAAGCTAATTAAGAAACTCATAAGAGTTTTTA
32064001 TAACAAGACACTTATCCAAGCTAATTAAGAAACTCATAAGAGTTTTTA
1 TAACAAGACACTTATCCAAGCTAATTAAGAAACTCATAAGAGTTTTTA
32064049 CTCAGGAAGC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (48 bp):
TAACAAGACACTTATCCAAGCTAATTAAGAAACTCATAAGAGTTTTTA
Found at i:32067131 original size:46 final size:46
Alignment explanation
Indices: 32067064--32067239 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
32067054 TGTAACCCGC
* *
32067064 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * *
32067110 CCATAAGTGAACTCGCACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-G--GAC--GTTCGCAT
* * *
32067160 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
32067203 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
32067240 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.57
47 25 0.23
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:32067184 original size:93 final size:93
Alignment explanation
Indices: 32067071--32067243 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
32067061 CGCCCATAAG
* *
32067071 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGCACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGCACTCAACTCA
32067136 ACGAGCTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* * * *
32067164 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGCACTCAACTCA
* *
32067229 ACGAGTTCGGATGCC
66 ACGAGCTCAGATGCC
32067244 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGCACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:32069336 original size:2 final size:2
Alignment explanation
Indices: 32069329--32069360 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32069319 TGACATTTAC
32069329 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32069361 CTACATTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32071065 original size:52 final size:52
Alignment explanation
Indices: 32070987--32071091 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
32070977 GAGTTAATGA
*
32070987 TACATTCTCATTGGCATTTTGTGGATTGATAAATATGGAATGTGGCTATAGG
1 TACATTCTCATTGGCATTTTGTGGATTGATAAATATGGAATGTGGCCATAGG
32071039 TACATTCTCATTGGCATTTTGTGGATTGATAAATATGGAATGTGGCCATAGG
1 TACATTCTCATTGGCATTTTGTGGATTGATAAATATGGAATGTGGCCATAGG
32071091 T
1 T
32071092 TGTTTGTTCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (52 bp):
TACATTCTCATTGGCATTTTGTGGATTGATAAATATGGAATGTGGCCATAGG
Found at i:32073063 original size:19 final size:19
Alignment explanation
Indices: 32073039--32073075 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
32073029 CAAAATATTT
32073039 AGACCAGTTAGACTTTTTA
1 AGACCAGTTAGACTTTTTA
32073058 AGACCAGTTAGACTTTTT
1 AGACCAGTTAGACTTTTT
32073076 GGGCCCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (19 bp):
AGACCAGTTAGACTTTTTA
Found at i:32077240 original size:5 final size:6
Alignment explanation
Indices: 32077223--32077251 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
32077213 TACAGGTTAA
32077223 TATTTT TATTTT TATTTT TA-TTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
32077252 CTGTTTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:32087666 original size:30 final size:30
Alignment explanation
Indices: 32087632--32087689 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
32087622 TTTTCGAGCA
* *
32087632 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
32087662 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
32087690 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:32088097 original size:47 final size:46
Alignment explanation
Indices: 32088027--32088299 Score: 218
Period size: 47 Copynumber: 5.8 Consensus size: 46
32088017 GACTTCTTAT
*
32088027 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACA-TATGA
** * *
32088073 GTGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACACATATGA
* * * *
32088121 GTGCCAGTGTAAGACATGTCTAGAACATGCATCGGC-CTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAC-A-TATGA
* *
32088168 -TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGAT-T-T
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACACATATGA
* ** *
32088212 GTGCTAGTGTAAGACATGTAC-GGGACATGCATCAACACGTACATACAGA
1 GTGCCAGTGTAAGACATGT-CTGGGACATGCATCGGCAC--ACATA-TGA
* * *
32088261 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
32088300 ACTTATCCCA
Statistics
Matches: 183, Mismatches: 25, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 29 0.16
45 3 0.02
46 26 0.14
47 64 0.35
48 26 0.14
49 15 0.08
50 12 0.07
51 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACATATGA
Found at i:32088284 original size:94 final size:95
Alignment explanation
Indices: 32088026--32088298 Score: 303
Period size: 94 Copynumber: 2.9 Consensus size: 95
32088016 AGACTTCTTA
* *
32088026 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATTA-TGAGTGCCAGTGTAAGACC
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACA-TACAGAGAGCCAGTGTAAGACC
32088089 ATGTCTGGGACATAGCATCGGCGTAGAGATG
65 ATGTCTGGGACATAGCATCGGCGTAGAGATG
* * * * * *
32088120 AGTGCCAGTGTAAGACATGTCTAGAACATGCATCGGCCT-C-GACGATGATAGCCAGTGTAAGA-
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACATAC-A-GAGAGCCAGTGTAAGAC
*
32088182 CATGTCTGGGACAT-GCATCGGC-TA-AGATT
64 CATGTCTGGGACATAGCATCGGCGTAGAGATG
** * *
32088211 TGTGCTAGTGTAAGACATGTAC-GGGACATGCATCAACACGTACATACAGAGAGCTAGTATAAGA
1 TGTGCTAGTGTAAGACATGT-CTGGGACATGCATCGGC-C-TACATACAGAGAGCCAGTGTAAGA
*
32088275 CCATGTCTGGGACATGGCATCGGC
63 CCATGTCTGGGACATAGCATCGGC
32088299 AACTTATCCC
Statistics
Matches: 149, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
91 33 0.22
92 5 0.03
93 22 0.15
94 65 0.44
95 24 0.16
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (95 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACATACAGAGAGCCAGTGTAAGACCA
TGTCTGGGACATAGCATCGGCGTAGAGATG
Found at i:32088290 original size:141 final size:141
Alignment explanation
Indices: 32088032--32088298 Score: 312
Period size: 141 Copynumber: 1.9 Consensus size: 141
32088022 CTTATGTGCT
*
32088032 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAACATTAT-AGTGCCAGTGTAAGACCATGTCTGG
** * * * *
32088097 GACATAGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACATGTCTAGAACAT-GCATCGGCCTCG
65 GACATAGCATCCACGTACAGAAGAGAGCCAGTATAAGACATGTCTAGAACATGGCATCGGCCTCG
32088161 ACGATGATAGCC
130 ACGATGATAGCC
* *
32088173 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATT-T-GTGCTAGTGTAAGA-CATGTAC-G
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-AACATTATAGTGCCAGTGTAAGACCATGT-CTG
* * * *
32088234 GGACAT-GCATCAACACGTACATACAGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGG
64 GGACATAGCATC--CACGTACAGA-AGAGAGCCAGTATAAGA-CATGTCTAGAACATGGCATCGG
32088298 C
125 C
32088299 AACTTATCCC
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
137 5 0.05
138 12 0.11
139 20 0.19
140 13 0.12
141 44 0.42
142 12 0.11
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCAACATTATAGTGCCAGTGTAAGACCATGTCTGGG
ACATAGCATCCACGTACAGAAGAGAGCCAGTATAAGACATGTCTAGAACATGGCATCGGCCTCGA
CGATGATAGCC
Found at i:32089139 original size:42 final size:42
Alignment explanation
Indices: 32089059--32089139 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
32089049 CCACATGGGC
* *
32089059 GTGTGCCATGGCAGTGTTTTAAAGTTAGTATTGTACACGAGA
1 GTGTGCCATGGCAGTGTTTTAAAGTCAGTATTGCACACGAGA
*
32089101 GTGTGCCATGGCCGTGTTTTAAAGTCAG-AGTTGCACACG
1 GTGTGCCATGGCAGTGTTTTAAAGTCAGTA-TTGCACACG
32089140 GGATAAGGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (42 bp):
GTGTGCCATGGCAGTGTTTTAAAGTCAGTATTGCACACGAGA
Found at i:32096035 original size:30 final size:30
Alignment explanation
Indices: 32096001--32096058 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
32095991 CACTGTCTGG
*
32096001 CACATGGGC-GTGTGTCC-AGCCCGTGTGGCT
1 CACAT-GGCTGTGTG-CCTAGCCCATGTGGCT
32096031 CACATGGCTGTGTGCCTAGCCCATGTGG
1 CACATGGCTGTGTGCCTAGCCCATGTGG
32096059 AAATGCCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.12, C:0.29, G:0.34, T:0.24
Consensus pattern (30 bp):
CACATGGCTGTGTGCCTAGCCCATGTGGCT
Found at i:32099288 original size:12 final size:13
Alignment explanation
Indices: 32099266--32099299 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
32099256 TGAATTTGGC
32099266 TTATGATATGTGT
1 TTATGATATGTGT
32099279 TTAT-ATATGTGT
1 TTATGATATGTGT
*
32099291 TTGTGATAT
1 TTATGATAT
32099300 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (13 bp):
TTATGATATGTGT
Found at i:32101859 original size:50 final size:48
Alignment explanation
Indices: 32101775--32101913 Score: 161
Period size: 50 Copynumber: 2.9 Consensus size: 48
32101765 AAAAGGGTAA
* * * *
32101775 AATATCGATGCCATGTTCCAGACATGGTCGTACACTGGCTCTTATACATC
1 AATACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATA-A-C
* * * * *
32101825 AGTACCGATGCCATGTCCCATACATGGTCTTACACTGACACATATAAC
1 AATACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATAAC
* *
32101873 AATGCAGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
1 AATACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
32101914 GCATATTAAG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
48 35 0.47
49 1 0.01
50 38 0.51
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (48 bp):
AATACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATAAC
Found at i:32101931 original size:48 final size:48
Alignment explanation
Indices: 32101780--32101936 Score: 161
Period size: 48 Copynumber: 3.2 Consensus size: 48
32101770 GGTAAAATAT
* * * * *
32101780 CGATGCCATGTTCCAGACATGGTCGTACACTGGCTCTTATACATCAGTAC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATA-ATAAG-GC
* * * * * *
32101830 CGATGCCATGTCCCATACATGGTCTTACACTGACACATATAACAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATAATAAGGC
* ** *
32101878 AGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTAAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATAATAAGGC
32101926 CGATGCCATGT
1 CGATGCCATGT
32101937 CTACACTGGC
Statistics
Matches: 86, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
48 49 0.57
49 2 0.02
50 35 0.41
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATAATAAGGC
Found at i:32101965 original size:35 final size:35
Alignment explanation
Indices: 32101903--32101971 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
32101893 AACATGGTCT
* **
32101903 TACACTGGCTCGCATATTAAGGCCGATGCCATGTC
1 TACACTGGCTCACATAACAAGGCCGATGCCATGTC
* *
32101938 TACACTGGCTCACATAACAATGTCGATGCCATGT
1 TACACTGGCTCACATAACAAGGCCGATGCCATGT
32101972 TCCAAACACG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (35 bp):
TACACTGGCTCACATAACAAGGCCGATGCCATGTC
Found at i:32102035 original size:50 final size:48
Alignment explanation
Indices: 32101938--32102042 Score: 122
Period size: 50 Copynumber: 2.1 Consensus size: 48
32101928 ATGCCATGTC
*
32101938 TACACTGGCTCACATAACAATGTCGATGCCATGTTCCAAACACGGTCT
1 TACACTGGCTCACATAACAATGCCGATGCCATGTTCCAAACACGGTCT
* * * * *
32101986 TACACTGGCTCGCATATACTGATGCCTATGCCATG-TCCTAGACATGGTCT
1 TACACTGGCTCACATA-AC-AATGCCGATGCCATGTTCC-AAACACGGTCT
32102036 TACACTG
1 TACACTG
32102043 ACACATACCG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 15 0.31
49 5 0.10
50 28 0.58
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TACACTGGCTCACATAACAATGCCGATGCCATGTTCCAAACACGGTCT
Found at i:32107362 original size:23 final size:23
Alignment explanation
Indices: 32107332--32107378 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32107322 AATTTTTTAG
32107332 TTGGTTTCATGGACATCAATATA
1 TTGGTTTCATGGACATCAATATA
32107355 TTGGTTTCATGGACATCAATATA
1 TTGGTTTCATGGACATCAATATA
32107378 T
1 T
32107379 AAAAGTCAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (23 bp):
TTGGTTTCATGGACATCAATATA
Found at i:32108650 original size:6 final size:6
Alignment explanation
Indices: 32108641--32108667 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32108631 CATTAATATT
32108641 AGCCTC AGCCTC AGCCTC AGCCTC AGC
1 AGCCTC AGCCTC AGCCTC AGCCTC AGC
32108668 ATTATCTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.48, G:0.19, T:0.15
Consensus pattern (6 bp):
AGCCTC
Found at i:32112053 original size:20 final size:20
Alignment explanation
Indices: 32112028--32112067 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32112018 TAGTGAGACC
32112028 GCTGATGTGG-CAAGTTAACT
1 GCTGATGTGGCCAA-TTAACT
32112048 GCTGATGTGGCCAATTAACT
1 GCTGATGTGGCCAATTAACT
32112068 TGCCACGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (20 bp):
GCTGATGTGGCCAATTAACT
Found at i:32113397 original size:16 final size:17
Alignment explanation
Indices: 32113376--32113408 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32113366 AACATAGAAA
32113376 ATAAAATAT-GTAAGCT
1 ATAAAATATAGTAAGCT
*
32113392 ATAAAATTTAGTAAGCT
1 ATAAAATATAGTAAGCT
32113409 CGTATAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (17 bp):
ATAAAATATAGTAAGCT
Found at i:32120864 original size:24 final size:24
Alignment explanation
Indices: 32120805--32120853 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
32120795 ATCTAAAGCA
32120805 TATGCTAAATATGTGTCACAACCT
1 TATGCTAAATATGTGTCACAACCT
32120829 TATGCTAAATATGTGTCACAACCT
1 TATGCTAAATATGTGTCACAACCT
32120853 T
1 T
32120854 TTCTCACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (24 bp):
TATGCTAAATATGTGTCACAACCT
Found at i:32125105 original size:37 final size:37
Alignment explanation
Indices: 32125049--32125225 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
32125039 CGAATAGTCC
* *
32125049 CCACACGTAGTTATTGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
32125086 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
32125123 TCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
32125160 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
32125197 CCACGCGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
32125226 ATATATTTCC
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:32125452 original size:48 final size:48
Alignment explanation
Indices: 32125398--32125610 Score: 417
Period size: 48 Copynumber: 4.4 Consensus size: 48
32125388 GCCGAATCAC
32125398 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
32125446 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
32125494 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
32125542 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
32125590 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
32125611 CACATATATA
Statistics
Matches: 163, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:32135923 original size:20 final size:19
Alignment explanation
Indices: 32135900--32135946 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
32135890 TATTTCTTAA
32135900 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
32135920 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
32135940 AATTAAA
1 AATTAAA
32135947 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:32138832 original size:1 final size:1
Alignment explanation
Indices: 32138817--32138882 Score: 60
Period size: 1 Copynumber: 66.0 Consensus size: 1
32138807 TTGCTTTCCC
* * * * * * * *
32138817 TTTTGTTTTTATTTTTATATTTATTTTTTTTTTTTTTTTTTTTTTATTTTTTATTTTTTTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
32138882 T
1 T
32138883 GTTTCATGTT
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.88
Consensus pattern (1 bp):
T
Found at i:32138843 original size:23 final size:20
Alignment explanation
Indices: 32138817--32138882 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 20
32138807 TTGCTTTCCC
*
32138817 TTTTGTTTTTATTTTTATATT
1 TTTTTTTTTTATTTTT-TATT
*
32138838 TATTTTTTTTT-TTTTTTTTT
1 T-TTTTTTTTTATTTTTTATT
32138858 TTTTATTTTTTATTTTTTTATT
1 TTTT-TTTTTTA-TTTTTTATT
32138880 TTT
1 TTT
32138883 GTTTCATGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 3 0.08
20 10 0.26
21 6 0.16
22 19 0.50
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.88
Consensus pattern (20 bp):
TTTTTTTTTTATTTTTTATT
Found at i:32143284 original size:44 final size:44
Alignment explanation
Indices: 32143206--32143307 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 44
32143196 TCCGATATAT
*
32143206 GATTTAGTGTAAGACCACATCTGAGACATTGGCATCG-ATTTGA
1 GATTTAGTGTAAGACCACATCTGAGACATCGGCATCGTATTTGA
** * * *
32143249 GATTTACGTGTAAGACCATGTCTGGGATATCGGCATTGTATTT--
1 GATTTA-GTGTAAGACCACATCTGAGACATCGGCATCGTATTTGA
*
32143292 GATTTTGTGTAAGACC
1 GATTTAGTGTAAGACC
32143308 CTATCTAGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 10 0.20
43 11 0.22
44 25 0.50
45 4 0.08
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (44 bp):
GATTTAGTGTAAGACCACATCTGAGACATCGGCATCGTATTTGA
Found at i:32144901 original size:3 final size:3
Alignment explanation
Indices: 32144893--32144920 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32144883 GTAGAGAGCC
32144893 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
32144921 GCAAAGATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:32145259 original size:30 final size:30
Alignment explanation
Indices: 32145195--32145261 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
32145185 CCTGTTAATC
* *
32145195 AGTGACTGTTTTGTCACTTTTTATAACGTT
1 AGTGACTCTTTTGTCACTTTTTATAAAGTT
*
32145225 AGTGACTCTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTCTTTTGTCACTTTTT-ATAAAGTT
32145254 GAGTGACT
1 -AGTGACT
32145262 GAAATGAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 10 0.31
30 22 0.69
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (30 bp):
AGTGACTCTTTTGTCACTTTTTATAAAGTT
Found at i:32145500 original size:29 final size:29
Alignment explanation
Indices: 32145462--32145521 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
32145452 TGATAAATGT
*
32145462 TTATAAATTCTGAAATCAACTAAGCTTTA
1 TTATAAATTCTAAAATCAACTAAGCTTTA
32145491 TTATAAATTCTAAAATCAACTAAGCTTTA
1 TTATAAATTCTAAAATCAACTAAGCTTTA
32145520 TT
1 TT
32145522 CTTTTTGCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.40
Consensus pattern (29 bp):
TTATAAATTCTAAAATCAACTAAGCTTTA
Found at i:32147276 original size:21 final size:21
Alignment explanation
Indices: 32147236--32147277 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32147226 CATTATTAAA
* *
32147236 TAAGATGTTTTTGTATTTTTT
1 TAAGATATTTTTGTACTTTTT
*
32147257 TAAGATATTTTTGTGCTTTTT
1 TAAGATATTTTTGTACTTTTT
32147278 AAAAGTGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.02, G:0.14, T:0.64
Consensus pattern (21 bp):
TAAGATATTTTTGTACTTTTT
Found at i:32168027 original size:15 final size:15
Alignment explanation
Indices: 32168007--32168036 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32167997 GAGTTAGAGA
32168007 AAAACTATAAATAAT
1 AAAACTATAAATAAT
*
32168022 AAAACTATAAGTAAT
1 AAAACTATAAATAAT
32168037 TTTAAACCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAACTATAAATAAT
Found at i:32170683 original size:13 final size:14
Alignment explanation
Indices: 32170665--32170693 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32170655 ATTTTTTATC
32170665 TAAACTTAT-TTTT
1 TAAACTTATATTTT
32170678 TAAACTTATATTTT
1 TAAACTTATATTTT
32170692 TA
1 TA
32170694 TTTAAATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TAAACTTATATTTT
Found at i:32170955 original size:20 final size:20
Alignment explanation
Indices: 32170930--32170967 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32170920 TATATTTAAA
32170930 ATGTTA-CGTTTTAATTATTT
1 ATGTTATCGTTTT-ATTATTT
32170950 ATGTTATCGTTTTATTAT
1 ATGTTATCGTTTTATTAT
32170968 GAATTGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.61
Consensus pattern (20 bp):
ATGTTATCGTTTTATTATTT
Found at i:32171529 original size:6 final size:6
Alignment explanation
Indices: 32171518--32171542 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32171508 GGCTTATCTT
32171518 TCTTTC TCTTTC TCTTTC TCTTTC T
1 TCTTTC TCTTTC TCTTTC TCTTTC T
32171543 ATTTATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TCTTTC
Found at i:32180638 original size:19 final size:19
Alignment explanation
Indices: 32180614--32180672 Score: 109
Period size: 19 Copynumber: 3.1 Consensus size: 19
32180604 TTCATTGCCA
*
32180614 AACATTTGTCATTCATGTC
1 AACATTTGACATTCATGTC
32180633 AACATTTGACATTCATGTC
1 AACATTTGACATTCATGTC
32180652 AACATTTGACATTCATGTC
1 AACATTTGACATTCATGTC
32180671 AA
1 AA
32180673 TCTCCCCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (19 bp):
AACATTTGACATTCATGTC
Found at i:32184324 original size:32 final size:33
Alignment explanation
Indices: 32184284--32184370 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 33
32184274 GAATACTAAT
* * *
32184284 TGATATTTGTTATCATTTTACAAAAT-TAAAGT
1 TGATATTTGTTATCATTTCACAAAATGAAAAGC
* *
32184316 TG-TAATTTGTTATAAATTCACAAAATGAAAAGC
1 TGAT-ATTTGTTATCATTTCACAAAATGAAAAGC
32184349 TGATATTTGTTATCATTTCACA
1 TGATATTTGTTATCATTTCACA
32184371 GAACCACATG
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
31 1 0.02
32 21 0.47
33 22 0.49
34 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (33 bp):
TGATATTTGTTATCATTTCACAAAATGAAAAGC
Found at i:32189442 original size:42 final size:43
Alignment explanation
Indices: 32189381--32189475 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
32189371 GAGATTTATG
* * *
32189381 TGTAAGACCATGTCAGGGACATTAG-CATAG-TATTTGATTTCA
1 TGTAAGACCATGTCAGGGACAAT-GTCATAGATACTTGATTACA
* * *
32189423 TGTAAGACCCTGTCTGGGACAATGTCATCGATACTTGATTACA
1 TGTAAGACCATGTCAGGGACAATGTCATAGATACTTGATTACA
32189466 TGTAAGACCA
1 TGTAAGACCA
32189476 CGTCTAGGAC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 24 0.55
43 19 0.43
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCAGGGACAATGTCATAGATACTTGATTACA
Found at i:32190215 original size:10 final size:10
Alignment explanation
Indices: 32190177--32190223 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
32190167 TTATGAATTT
32190177 TATGTTTTGG
1 TATGTTTTGG
*
32190187 TATGACTTTGG
1 TATG-TTTTGG
32190198 CTTATGTTTTGG
1 --TATGTTTTGG
32190210 TATGTTTTGG
1 TATGTTTTGG
32190220 TATG
1 TATG
32190224 GATTAATAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 18 0.56
11 5 0.16
12 5 0.16
13 4 0.12
ACGTcount: A:0.13, C:0.04, G:0.28, T:0.55
Consensus pattern (10 bp):
TATGTTTTGG
Found at i:32190858 original size:24 final size:23
Alignment explanation
Indices: 32190831--32190912 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 23
32190821 GGACTCTGTA
32190831 ATGATGTATGACTATGATGCTTTG
1 ATGAT-TATGACTATGATGCTTTG
* * *
32190855 ATGACTTATG--TAAGGGACT-CTGTA
1 ATGA-TTATGACT-A-TGA-TGCTTTG
32190879 ATGATGTATGACTATGATGCTTTG
1 ATGAT-TATGACTATGATGCTTTG
32190903 ATGATTATGA
1 ATGATTATGA
32190913 AATGAATGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 17
0.66 0.09 0.25
Matches are distributed among these distances:
22 1 0.02
23 8 0.18
24 31 0.70
25 3 0.07
26 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (23 bp):
ATGATTATGACTATGATGCTTTG
Found at i:32190879 original size:48 final size:48
Alignment explanation
Indices: 32190808--32190911 Score: 201
Period size: 48 Copynumber: 2.2 Consensus size: 48
32190798 TAGGTCTCGT
32190808 TGACTTATGTAAGGGACTCTGTAATGATGTATGACTATGATGCTTTGA
1 TGACTTATGTAAGGGACTCTGTAATGATGTATGACTATGATGCTTTGA
32190856 TGACTTATGTAAGGGACTCTGTAATGATGTATGACTATGATGCTTTGA
1 TGACTTATGTAAGGGACTCTGTAATGATGTATGACTATGATGCTTTGA
32190904 TGA-TTATG
1 TGACTTATG
32190912 AAATGAATGC
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 5 0.09
48 51 0.91
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (48 bp):
TGACTTATGTAAGGGACTCTGTAATGATGTATGACTATGATGCTTTGA
Found at i:32193300 original size:48 final size:49
Alignment explanation
Indices: 32193130--32193366 Score: 278
Period size: 48 Copynumber: 4.8 Consensus size: 49
32193120 TGAGGTCGCA
* * * * *
32193130 TGTGTAGTAATAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCACG
* * * ** *
32193181 TGTGTAGAACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTTACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACG
*
32193231 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCA-G
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * * *
32193279 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* *
32193328 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
32193367 GGTTTGGCTA
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
48 46 0.29
49 40 0.25
50 42 0.26
51 31 0.19
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
Found at i:32197127 original size:47 final size:48
Alignment explanation
Indices: 32197066--32197157 Score: 123
Period size: 49 Copynumber: 1.9 Consensus size: 48
32197056 AAACATGGTG
* * *
32197066 TTACACTGGTTCTCA-TATTTAAGTTGATGCCATGTCCCAGACAAATC
1 TTACACTGGCTCTCACTATCTAAGTCGATGCCATGTCCCAGACAAATC
**
32197113 TTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACA
1 TTACACTGGCTCTCAC-TATCTAAGTCGATGCCATGTCCCAGACA
32197158 GGTCTTATGC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 14 0.37
49 24 0.63
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (48 bp):
TTACACTGGCTCTCACTATCTAAGTCGATGCCATGTCCCAGACAAATC
Found at i:32201895 original size:18 final size:18
Alignment explanation
Indices: 32201860--32201895 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32201850 GATAAAAGAA
32201860 CCTAATCGCATAAAATGT
1 CCTAATCGCATAAAATGT
32201878 CCTAATCGCATAAAATGT
1 CCTAATCGCATAAAATGT
32201896 AAAAGTTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (18 bp):
CCTAATCGCATAAAATGT
Found at i:32203033 original size:42 final size:44
Alignment explanation
Indices: 32202977--32203083 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 44
32202967 TACGTGTCAA
* * *
32202977 ACCA-TGTCAGGGACATTGGCATCG-TATTTGATTTCATGTAAG
1 ACCACTGTCTGGGACATTGGCATCGATACTTGATTACATGTAAG
*
32203019 ACC-CTGTCTGGGACAGTGGCATCGATACTTGATTACATGTAAG
1 ACCACTGTCTGGGACATTGGCATCGATACTTGATTACATGTAAG
* *
32203062 ACCAC-GTCTGAGACGTTGGCAT
1 ACCACTGTCTGGGACATTGGCAT
32203084 TGTACGAGCT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 21 0.38
43 33 0.60
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (44 bp):
ACCACTGTCTGGGACATTGGCATCGATACTTGATTACATGTAAG
Done.