Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 122 of 345
Found at i:32560333 original size:58 final size:59
Alignment explanation
Indices: 32560242--32560356 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 59
32560232 TTTGGTAAAA
*
32560242 CGCCGCTAAAGACCAGAGCACTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGAG
1 CGCCGCTAAAGACCAGAGCACTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAGAG
* *
32560301 CGCCGCTAATGACC-GAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAG
1 CGCCGCTAAAGACCAGAGCACTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAG
32560357 TGTATTAGCG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 40 0.75
59 13 0.25
ACGTcount: A:0.29, C:0.30, G:0.27, T:0.15
Consensus pattern (59 bp):
CGCCGCTAAAGACCAGAGCACTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAGAG
Found at i:32560368 original size:41 final size:40
Alignment explanation
Indices: 32560301--32560391 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 40
32560291 AAGACCAGAG
* *
32560301 CGCCGCTAATGACCGAGCATTAGCGGCGCTTTTGGCAAAA
1 CGCCGCTAAAGACCGAGCATTAGCGGCGCTTTTGGAAAAA
* * *
32560341 CGCCGCTAAAGACCAGTGTATTAGCGGCGCTTTTGTAAAAA
1 CGCCGCTAAAGACC-GAGCATTAGCGGCGCTTTTGGAAAAA
*
32560382 CGCTGCTAAA
1 CGCCGCTAAA
32560392 AGTCATATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 13 0.30
41 31 0.70
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (40 bp):
CGCCGCTAAAGACCGAGCATTAGCGGCGCTTTTGGAAAAA
Found at i:32560374 original size:99 final size:99
Alignment explanation
Indices: 32560203--32560391 Score: 290
Period size: 99 Copynumber: 1.9 Consensus size: 99
32560193 TTGGTAAAAT
* *
32560203 GCCGCTAAAGACTGAGCATTAGCGACGCTTTTGGTAAAACGCCGCTAAAGACCAGAGCACTAGCG
1 GCCGCTAAAGACCGAGCATTAGCGACGCTTTTGGCAAAACGCCGCTAAAGACCAGAGCACTAGCG
32560268 GCGCTTTTGGT-AAAACGCCGCTAAAGACCAGAGC
66 GCGCTTTT-GTAAAAACGCCGCTAAAGACCAGAGC
* * * * *
32560302 GCCGCTAATGACCGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAGTGTATTAGCG
1 GCCGCTAAAGACCGAGCATTAGCGACGCTTTTGGCAAAACGCCGCTAAAGACCAGAGCACTAGCG
*
32560367 GCGCTTTTGTAAAAACGCTGCTAAA
66 GCGCTTTTGTAAAAACGCCGCTAAA
32560392 AGTCATATAA
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 2 0.02
99 79 0.98
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (99 bp):
GCCGCTAAAGACCGAGCATTAGCGACGCTTTTGGCAAAACGCCGCTAAAGACCAGAGCACTAGCG
GCGCTTTTGTAAAAACGCCGCTAAAGACCAGAGC
Found at i:32560581 original size:21 final size:21
Alignment explanation
Indices: 32560557--32560641 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
32560547 CATTATAGTT
* *
32560557 TATGGTTTATGATTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* * *
32560578 TATGATTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
32560599 TATGAGTTCACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
32560624 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
32560642 GTTTAGGAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
21 30 0.60
22 2 0.04
24 3 0.06
25 15 0.30
ACGTcount: A:0.28, C:0.02, G:0.25, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:32560621 original size:46 final size:46
Alignment explanation
Indices: 32560564--32560657 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
32560554 GTTTATGGTT
* *
32560564 TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTATGAGTTCAC
1 TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
* *
32560610 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
32560656 TA
1 TA
32560658 GTATTTGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.03, G:0.24, T:0.43
Consensus pattern (46 bp):
TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:32560713 original size:7 final size:7
Alignment explanation
Indices: 32560684--32560804 Score: 68
Period size: 7 Copynumber: 17.1 Consensus size: 7
32560674 GATGAATTAT
32560684 GGGTTTA
1 GGGTTTA
*
32560691 GGGATTA
1 GGGTTTA
* *
32560698 TGATTTA
1 GGGTTTA
32560705 GGGTTTA
1 GGGTTTA
*
32560712 GGGGTTA
1 GGGTTTA
32560719 GGG-TTA
1 GGGTTTA
*
32560725 -AGTTTA
1 GGGTTTA
* *
32560731 AGGTGTAA
1 GGGT-TTA
*
32560739 GGGTTTG
1 GGGTTTA
*
32560746 GGGTTAA
1 GGGTTTA
32560753 GGGTTTA
1 GGGTTTA
*
32560760 GAGTTTA
1 GGGTTTA
*
32560767 GTGTTTA
1 GGGTTTA
*
32560774 TGGG-ATA
1 -GGGTTTA
*
32560781 GGGGTTAA
1 -GGGTTTA
32560789 GAGGTTTA
1 G-GGTTTA
32560797 GGGTTTA
1 GGGTTTA
32560804 G
1 G
32560805 ATTAATTAGT
Statistics
Matches: 84, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
5 1 0.01
6 6 0.07
7 63 0.75
8 14 0.17
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:32561996 original size:46 final size:46
Alignment explanation
Indices: 32561940--32562029 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
32561930 TATTTATATT
*
32561940 ATTTTTAATTTA-ATAT-TTAATATCCTATATATGTAATTGTATTAAA
1 ATTTTTAATTTATATATATTAAAAT--TATATATGTAATTGTATTAAA
* *
32561986 ATTTTTAATTTATATTTATTAAAATTTTATATGTAATTGTATTA
1 ATTTTTAATTTATATATATTAAAATTATATATGTAATTGTATTA
32562030 GCATTTTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
46 30 0.77
47 3 0.08
48 6 0.15
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (46 bp):
ATTTTTAATTTATATATATTAAAATTATATATGTAATTGTATTAAA
Found at i:32562036 original size:23 final size:23
Alignment explanation
Indices: 32561967--32562029 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
32561957 TAATATCCTA
32561967 TATATGTAATTGTATTAAAATTT
1 TATATGTAATTGTATTAAAATTT
*
32561990 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
32562013 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
32562030 GCATTTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.12
23 26 0.76
24 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:32566077 original size:12 final size:12
Alignment explanation
Indices: 32566060--32566092 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
32566050 TCTTGCATAT
32566060 ATGATTAATAAC
1 ATGATTAATAAC
32566072 ATGATTAATAAC
1 ATGATTAATAAC
32566084 ATGATTAAT
1 ATGATTAAT
32566093 GGTTCTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (12 bp):
ATGATTAATAAC
Found at i:32566740 original size:16 final size:16
Alignment explanation
Indices: 32566714--32566746 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
32566704 TTTTCAGGAC
32566714 TTTTTTATAATATTTTA
1 TTTTTTATAAT-TTTTA
32566731 TTTTTT-TAATTTTTA
1 TTTTTTATAATTTTTA
32566746 T
1 T
32566747 GACCTTTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 4 0.25
17 6 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTATAATTTTTA
Found at i:32571062 original size:29 final size:29
Alignment explanation
Indices: 32571020--32571079 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
32571010 AACAATACTT
32571020 TTACCTAACAGCTTATAAAATCAAAGTAA
1 TTACCTAACAGCTTATAAAATCAAAGTAA
32571049 TTACCTAACAGCTTATAAAATCAAAGTAA
1 TTACCTAACAGCTTATAAAATCAAAGTAA
32571078 TT
1 TT
32571080 GTTATGCTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.30
Consensus pattern (29 bp):
TTACCTAACAGCTTATAAAATCAAAGTAA
Found at i:32574878 original size:22 final size:21
Alignment explanation
Indices: 32574853--32574894 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32574843 TTAATATGAA
*
32574853 GGGTCTAAATTTAAAATTTTAG
1 GGGT-TAAATTGAAAATTTTAG
*
32574875 GGGTTTAATTGAAAATTTTA
1 GGGTTAAATTGAAAATTTTA
32574895 AACTTTAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (21 bp):
GGGTTAAATTGAAAATTTTAG
Found at i:32576715 original size:2 final size:2
Alignment explanation
Indices: 32576708--32576736 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32576698 GATTACTTTT
32576708 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32576737 CAAATATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32580217 original size:20 final size:21
Alignment explanation
Indices: 32580179--32580227 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
32580169 CTCTGAACTG
*
32580179 TAAATTTTGAACTTCAAA-TC
1 TAAATCTTGAACTTCAAATTC
*
32580199 TTAATCTTGAAC-TCAAAATTC
1 TAAATCTTGAACTTC-AAATTC
32580220 TAAATCTT
1 TAAATCTT
32580228 AAATCCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 13 0.54
21 9 0.38
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (21 bp):
TAAATCTTGAACTTCAAATTC
Found at i:32580355 original size:33 final size:33
Alignment explanation
Indices: 32580288--32580355 Score: 77
Period size: 34 Copynumber: 2.1 Consensus size: 33
32580278 TCTGGGATTC
*
32580288 AAAATAAAAAAATTATCAAAATTATATGTCAAT
1 AAAATAAAAAAATTATCAAAATTATATGTAAAT
* *
32580321 AAAATAGAAAAATTTATTAAAATGT-TAT-TAAAT
1 AAAATA-AAAAAATTATCAAAAT-TATATGTAAAT
32580354 AA
1 AA
32580356 TTAAAAGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
33 12 0.40
34 17 0.57
35 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.32
Consensus pattern (33 bp):
AAAATAAAAAAATTATCAAAATTATATGTAAAT
Found at i:32591607 original size:16 final size:17
Alignment explanation
Indices: 32591583--32591621 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
32591573 CGTCTGCTTA
*
32591583 TTTCCTTCTTTCTCTT-
1 TTTCTTTCTTTCTCTTC
*
32591599 TTTCTTTCTTTCTTTTC
1 TTTCTTTCTTTCTCTTC
32591616 TTTCTT
1 TTTCTT
32591622 ATTTTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTCTTTCTTTCTCTTC
Found at i:32594012 original size:3 final size:3
Alignment explanation
Indices: 32594006--32594052 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
32593996 ATTATTTAAG
*
32594006 TAA TAA TTA TAA TAA T-A TAA TAA T-A TAA TAA T-A TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32594050 TAA
1 TAA
32594053 CATAAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 8 0.21
3 30 0.79
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:32594026 original size:8 final size:8
Alignment explanation
Indices: 32594006--32594061 Score: 87
Period size: 8 Copynumber: 7.0 Consensus size: 8
32593996 ATTATTTAAG
32594006 TAATAATTA
1 TAATAA-TA
32594015 TAATAATA
1 TAATAATA
32594023 TAATAATA
1 TAATAATA
32594031 TAATAATA
1 TAATAATA
32594039 TAATAATA
1 TAATAATA
*
32594047 TAATAACA
1 TAATAATA
32594055 TAA-AATA
1 TAATAATA
32594062 AAAGAAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 3 0.07
8 36 0.80
9 6 0.13
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (8 bp):
TAATAATA
Found at i:32594075 original size:21 final size:20
Alignment explanation
Indices: 32594046--32594092 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
32594036 ATATAATAAT
32594046 ATAATAACATAAAATAAAAGAA
1 ATAA-AACATAAAAT-AAAGAA
* *
32594068 ATAAAACATGAAATAAATAA
1 ATAAAACATAAAATAAAGAA
32594088 ATAAA
1 ATAAA
32594093 GAAACAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 9 0.39
22 4 0.17
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (20 bp):
ATAAAACATAAAATAAAGAA
Found at i:32600789 original size:24 final size:24
Alignment explanation
Indices: 32600757--32600811 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
32600747 AATGCAGCAA
*
32600757 CATTTTACTTTTATTTAAAAGTTT
1 CATTTTACTTTTATTTAAAAATTT
*
32600781 TATTTTACTTTTATTTAAAAATTT
1 CATTTTACTTTTATTTAAAAATTT
32600805 CATTTTA
1 CATTTTA
32600812 AATTATGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (24 bp):
CATTTTACTTTTATTTAAAAATTT
Found at i:32601353 original size:25 final size:25
Alignment explanation
Indices: 32601325--32601385 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
32601315 ATCCAATTCT
*
32601325 TTTTTTTATATTTTAATTATAATTA
1 TTTTTTTATATTCTAATTATAATTA
* * * * *
32601350 TTTTTTAATAATCTCATTATATTTG
1 TTTTTTTATATTCTAATTATAATTA
32601375 TTTTTTTATAT
1 TTTTTTTATAT
32601386 AATATCTAGA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTTTTATATTCTAATTATAATTA
Found at i:32616261 original size:37 final size:37
Alignment explanation
Indices: 32616203--32616347 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
32616193 GCTCAGACGA
* *
32616203 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
32616240 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
32616277 AATCTCCGCACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
32616314 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32616348 ATATATTTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:32616463 original size:48 final size:48
Alignment explanation
Indices: 32616392--32616859 Score: 738
Period size: 48 Copynumber: 9.7 Consensus size: 48
32616382 TGTTACAACA
* *
32616392 TTCACATTAGCCTTTCGGCTTTACCACATATGCATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32616440 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
32616488 TTCACATTAGCCATTCGGCTTTATCACATATACACATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32616536 TTCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
32616584 TTCACATTAGCTATTCGGCTTTACCACATATACATATCACACATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CTCATATATAT
*
32616634 TTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32616682 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CTCATATATAT
* *
32616732 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32616780 TTCACATTAGCCATTCGGCTTTATCACATATACACATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32616828 TTCACATTAGCCATTCGGCTTTACCACATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATA
32616860 TGCATGTTCA
Statistics
Matches: 385, Mismatches: 31, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
48 295 0.77
50 90 0.23
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:32616672 original size:98 final size:96
Alignment explanation
Indices: 32616392--32616859 Score: 738
Period size: 98 Copynumber: 4.8 Consensus size: 96
32616382 TGTTACAACA
* *
32616392 TTCACATTAGCCTTTCGGCTTTACCACATATGCATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
32616457 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
* * * *
32616488 TTCACATTAGCCATTCGGCTTTATCACATATACACATCTCATACATATTTCACATTGGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
* *
32616553 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCACACATATAT
* * *
32616584 TTCACATTAGCTATTCGGCTTTACCACATATACATATCACACATATATGTTTCACATTAGCCATT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CTCATATATATTTCACATTAGCCATT
* * *
32616649 CGACTTTACCACATATACATATCTCATATATAT
64 CGGCTTTACCACATATACATATCACACATATAT
* *
32616682 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATGTTTCACATTAGCCATT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CTCATATATATTTCACATTAGCCATT
32616747 CGGCTTTACCACATATACATATCACACATATAT
64 CGGCTTTACCACATATACATATCACACATATAT
* *
32616780 TTCACATTAGCCATTCGGCTTTATCACATATACACATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
32616845 GCTTTACCACATATA
66 GCTTTACCACATATA
32616860 TGCATGTTCA
Statistics
Matches: 346, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
96 163 0.47
98 183 0.53
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATAT
Found at i:32616696 original size:146 final size:144
Alignment explanation
Indices: 32616392--32616859 Score: 810
Period size: 146 Copynumber: 3.2 Consensus size: 144
32616382 TGTTACAACA
* *
32616392 TTCACATTAGCCTTTCGGCTTTACCACATATGCATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
32616457 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCACATATACA
*
32616522 CATCTCATACATAT
131 CATCTCATATATAT
* *
32616536 TTCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCTATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
* *
32616601 GCTTTACCACATATACATATCACACATATATGTTTCACATTAGCCATTCGACTTTACCACATATA
66 GCTTTACCACATATACATATCACACATATA--TTTCACATTAGCCATTCGGCTTTATCACATATA
*
32616666 CATATCTCATATATAT
129 CACATCTCATATATAT
* *
32616682 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATGTTTCACATTAGCCATT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CTCATATATATTTCACATTAGCCATT
32616747 CGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCACATATA
64 CGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCACATATA
32616812 CACATCTCATATATAT
129 CACATCTCATATATAT
32616828 TTCACATTAGCCATTCGGCTTTACCACATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATA
32616860 TGCATGTTCA
Statistics
Matches: 305, Mismatches: 15, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
144 91 0.30
146 159 0.52
148 55 0.18
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCACATATACA
CATCTCATATATAT
Found at i:32616908 original size:47 final size:47
Alignment explanation
Indices: 32616781--32617069 Score: 366
Period size: 47 Copynumber: 6.1 Consensus size: 47
32616771 CACATATATT
* * ** * *
32616781 TCACATTAGCCATTCGGCTTTATCACATATACACAT-CTCATATAT-A
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT-TCA
* * * *
32616827 TTTCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 --TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
32616876 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
32616923 TCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
32616970 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
32617017 TCACATAGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
32617064 TCACAT
1 TCACAT
32617070 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
47 177 0.81
48 34 0.16
49 7 0.03
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:32617066 original size:25 final size:25
Alignment explanation
Indices: 32616942--32617070 Score: 85
Period size: 25 Copynumber: 5.4 Consensus size: 25
32616932 CCATTCGGCC
**
32616942 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCACATTCACAT
* * *
32616967 TCATCAC--ATAGGC-CATTCGGCCT
1 TCATCACATATATGCACATTC-ACAT
** *
32616990 T-ATCACATATATGCATGTTCATAT
1 TCATCACATATATGCACATTCACAT
* * *
32617014 TCATCAC--ATAGGC-CATTCGGCCT
1 TCATCACATATATGCACATTC-ACAT
32617037 T-ATCACATATATGCACATTCACAT
1 TCATCACATATATGCACATTCACAT
32617061 TCATCACATA
1 TCATCACATA
32617071 AAATCCTAAA
Statistics
Matches: 74, Mismatches: 20, Indels: 20
0.65 0.18 0.18
Matches are distributed among these distances:
22 16 0.22
23 15 0.20
24 15 0.20
25 28 0.38
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (25 bp):
TCATCACATATATGCACATTCACAT
Found at i:32621076 original size:15 final size:15
Alignment explanation
Indices: 32621043--32621076 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32621033 TTAATATTTT
**
32621043 AAAAATTCAAAATTC
1 AAAAATTCAAAATAA
32621058 AAAAATTCAAAATAA
1 AAAAATTCAAAATAA
32621073 AAAA
1 AAAA
32621077 GCATAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATTCAAAATAA
Found at i:32622274 original size:52 final size:46
Alignment explanation
Indices: 32622199--32622307 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
32622189 TATGCTTTCA
* * *
32622199 TATAAGACCATAGTCGGGCTATGGCATTGGTACAATGTGATTATGTGATTCCG
1 TATAAGACCATACTCGGGATATGGCATCGGT---A--TGA-TATGTGA-TCCG
32622252 TATAAGACCATACT-GGGATATGGCATCGGTATGATATGTGATCCG
1 TATAAGACCATACTCGGGATATGGCATCGGTATGATATGTGATCCG
32622297 TATAAGACCAT
1 TATAAGACCAT
32622308 GGCAGGGCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
45 15 0.28
46 7 0.13
47 3 0.06
49 1 0.02
52 14 0.26
53 13 0.25
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (46 bp):
TATAAGACCATACTCGGGATATGGCATCGGTATGATATGTGATCCG
Found at i:32622337 original size:46 final size:46
Alignment explanation
Indices: 32622240--32622327 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
32622230 ACAATGTGAT
*
32622240 TATGTGATTCCGTATAAGACCATACTGGGATATGGCATCGGTATGA
1 TATGTGATTCCGTATAAGACCATACAGGGATATGGCATCGGTATGA
* * *
32622286 TATGTGA-TCCGTATAAGACCATGGCAGGGCTATGGCTTCGGT
1 TATGTGATTCCGTATAAGACCAT-ACAGGGATATGGCATCGGT
32622328 GTGTGATGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 15 0.41
46 22 0.59
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (46 bp):
TATGTGATTCCGTATAAGACCATACAGGGATATGGCATCGGTATGA
Found at i:32623446 original size:15 final size:15
Alignment explanation
Indices: 32623426--32623455 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32623416 AAAAGATTGT
32623426 TGCCACCACTTAAAA
1 TGCCACCACTTAAAA
32623441 TGCCACCACTTAAAA
1 TGCCACCACTTAAAA
32623456 CACAATTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.33, G:0.07, T:0.20
Consensus pattern (15 bp):
TGCCACCACTTAAAA
Found at i:32623469 original size:17 final size:17
Alignment explanation
Indices: 32623447--32623483 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
32623437 AAAATGCCAC
32623447 CACTTAAAACACAATTA
1 CACTTAAAACACAATTA
32623464 CACTTAAAACACAATTA
1 CACTTAAAACACAATTA
32623481 CAC
1 CAC
32623484 CCTAACATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (17 bp):
CACTTAAAACACAATTA
Found at i:32625453 original size:25 final size:26
Alignment explanation
Indices: 32625425--32625473 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
32625415 GTTGTAATTC
32625425 AGAAAAATATCTTTAGA-AATTTTCT
1 AGAAAAATATCTTTAGAGAATTTTCT
* *
32625450 AGAATAATCTCTTTAGAGAATTTT
1 AGAAAAATATCTTTAGAGAATTTT
32625474 TTCTCTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (26 bp):
AGAAAAATATCTTTAGAGAATTTTCT
Found at i:32625593 original size:21 final size:21
Alignment explanation
Indices: 32625564--32625651 Score: 62
Period size: 21 Copynumber: 4.4 Consensus size: 21
32625554 TTCAACTATG
*
32625564 ATTACATTTAATTACTTTAAT
1 ATTAAATTTAATTACTTTAAT
32625585 ATTAAATTTAA-T-C--TAAT
1 ATTAAATTTAATTACTTTAAT
* * * *
32625602 ATTTATTTTAATTAAATTTAAC
1 ATTAAATTTAATT-ACTTTAAT
*
32625624 ATTAAGA--TAATCACTTTAAT
1 ATTAA-ATTTAATTACTTTAAT
32625644 ATTAAATT
1 ATTAAATT
32625652 AATAAATATT
Statistics
Matches: 49, Mismatches: 10, Indels: 16
0.65 0.13 0.21
Matches are distributed among these distances:
17 13 0.27
18 1 0.02
19 2 0.04
20 12 0.24
21 14 0.29
22 7 0.14
ACGTcount: A:0.43, C:0.07, G:0.01, T:0.49
Consensus pattern (21 bp):
ATTAAATTTAATTACTTTAAT
Found at i:32625611 original size:17 final size:16
Alignment explanation
Indices: 32625580--32625622 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
32625570 TTTAATTACT
*
32625580 TTAATATTAAATTTAA
1 TTAATATTTAATTTAA
*
32625596 TCTAATATTTATTTTAA
1 T-TAATATTTAATTTAA
32625613 TTAA-ATTTAA
1 TTAATATTTAA
32625623 CATTAAGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 5 0.22
16 4 0.17
17 14 0.61
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATATTTAATTTAA
Found at i:32625689 original size:17 final size:16
Alignment explanation
Indices: 32625641--32625712 Score: 78
Period size: 17 Copynumber: 4.5 Consensus size: 16
32625631 TAATCACTTT
*
32625641 AATATTAAATT-AATA
1 AATATTAATTTAAATA
32625656 AATATT-A-TTAAGATA
1 AATATTAATTTAA-ATA
32625671 AATATTAATTTAAATTA
1 AATATTAATTTAAA-TA
*
32625688 AATATTAATTTAAATTT
1 AATATTAATTTAAA-TA
32625705 AATATTAA
1 AATATTAA
32625713 ACTATTAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
13 2 0.04
14 2 0.04
15 15 0.29
16 2 0.04
17 30 0.59
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (16 bp):
AATATTAATTTAAATA
Found at i:32625712 original size:6 final size:6
Alignment explanation
Indices: 32625639--32625730 Score: 52
Period size: 6 Copynumber: 15.5 Consensus size: 6
32625629 GATAATCACT
* * * *
32625639 TTAATA TTAA-A TTAATAA ATATTA TTAAGA TAAATA TTAAT- TTAA-A
1 TTAATA TTAATA TTAAT-A TTAATA TTAATA TTAATA TTAATA TTAATA
*
32625685 TTAAATA TTAAT- TTAA-A TTTAATA TTAAACTA TTAA-A ATAATA TTA
1 TT-AATA TTAATA TTAATA -TTAATA TT-AA-TA TTAATA TTAATA TTA
32625731 TTTATGGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 22
0.67 0.10 0.23
Matches are distributed among these distances:
5 19 0.29
6 30 0.46
7 12 0.18
8 4 0.06
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (6 bp):
TTAATA
Found at i:32627347 original size:15 final size:15
Alignment explanation
Indices: 32627327--32627356 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32627317 CTATGCATGC
*
32627327 AAAATATAAAAGACA
1 AAAATACAAAAGACA
32627342 AAAATACAAAAGACA
1 AAAATACAAAAGACA
32627357 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:32634444 original size:26 final size:25
Alignment explanation
Indices: 32634396--32634452 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
32634386 AGAAACAACC
* *
32634396 ATAAAATATAGTTCAAAAGATAATAA
1 ATAAAATATAGTACAAAAAATAA-AA
*
32634422 TTAAAATA-AGTACAAGAAAATAAAA
1 ATAAAATATAGTACAA-AAAATAAAA
32634447 ATAAAA
1 ATAAAA
32634453 CAAAACAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.23
Consensus pattern (25 bp):
ATAAAATATAGTACAAAAAATAAAA
Found at i:32634499 original size:25 final size:26
Alignment explanation
Indices: 32634465--32634525 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
32634455 AAACAACTAA
* *
32634465 AAATAGAAATAAACATAAACATAAAAC
1 AAATA-AAATAAACATAAAAAGAAAAC
**
32634492 -AATAAAATAAAGTTAAAAAGAAAAC
1 AAATAAAATAAACATAAAAAGAAAAC
32634517 AAATAAAAT
1 AAATAAAAT
32634526 GAATGATGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.72, C:0.07, G:0.05, T:0.16
Consensus pattern (26 bp):
AAATAAAATAAACATAAAAAGAAAAC
Found at i:32637721 original size:26 final size:25
Alignment explanation
Indices: 32637685--32637768 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
32637675 CATGAAATTC
32637685 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAAC-CA
32637711 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
32637737 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
32637763 TTATCA
1 TTATCA
32637769 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 52 0.95
27 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:32644843 original size:46 final size:44
Alignment explanation
Indices: 32644741--32644848 Score: 137
Period size: 44 Copynumber: 2.4 Consensus size: 44
32644731 TGTCTTTGAC
** * *
32644741 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
*
32644785 ATGGACTTACATGGCTCAATCCTGTCTCCGAA-GCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCC-AATGCCATA--TATAAT
32644831 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
32644849 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 31 0.55
45 2 0.04
46 23 0.41
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
Found at i:32648691 original size:29 final size:29
Alignment explanation
Indices: 32648659--32648724 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
32648649 ATTGGCATTG
*
32648659 AGTGTGCGAGCTTGAAA-TGCATGGCACTA
1 AGTGTGCGAG-TTGAAAGTACATGGCACTA
* *
32648688 AGTGTGCGAGTTTAAAGTATATGGCACTA
1 AGTGTGCGAGTTGAAAGTACATGGCACTA
32648717 AGTGTGCG
1 AGTGTGCG
32648725 CGGCTGATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 5 0.15
29 28 0.85
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
AGTGTGCGAGTTGAAAGTACATGGCACTA
Found at i:32661855 original size:28 final size:28
Alignment explanation
Indices: 32661786--32661885 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
32661776 GACAAGATTG
* * * *
32661786 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
32661816 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32661844 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
32661873 GCACTAAGTGTGC
1 GCACTAAGTGTGC
32661886 AGATTCACTA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32665772 original size:30 final size:30
Alignment explanation
Indices: 32665736--32665866 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
32665726 GACAAGATTG
* * * * *
32665736 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
32665766 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
32665794 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32665824 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32665853 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32665867 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:32665827 original size:58 final size:58
Alignment explanation
Indices: 32665736--32665866 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
32665726 GACAAGATTG
* * * * * *
32665736 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
32665794 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
32665853 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32665867 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:32673706 original size:30 final size:30
Alignment explanation
Indices: 32673670--32673800 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
32673660 GACAAGATTG
* * * * *
32673670 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
32673700 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
32673728 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32673758 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32673787 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32673801 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:32673761 original size:58 final size:58
Alignment explanation
Indices: 32673670--32673800 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
32673660 GACAAGATTG
* * * * * *
32673670 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
32673728 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
32673787 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32673801 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:32681258 original size:48 final size:48
Alignment explanation
Indices: 32681202--32681298 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
32681192 TGATATACAT
32681202 ATACATGGTATAGATGTTACATGTACATAGAATTGAAATAATTGTTGA
1 ATACATGGTATAGATGTTACATGTACATAGAATTGAAATAATTGTTGA
* *
32681250 ATACATGGTATAGATGTTACATGTACGTGGAATTGAAATAATTGTTGA
1 ATACATGGTATAGATGTTACATGTACATAGAATTGAAATAATTGTTGA
32681298 A
1 A
32681299 CTCATACATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (48 bp):
ATACATGGTATAGATGTTACATGTACATAGAATTGAAATAATTGTTGA
Found at i:32694714 original size:22 final size:22
Alignment explanation
Indices: 32694689--32694732 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32694679 AAATGGTTTA
32694689 TATATGAT-ATACATATACATGG
1 TATA-GATGATACATATACATGG
* *
32694711 TATAGATGTTACATGTACATGG
1 TATAGATGATACATATACATGG
32694733 AATCGAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TATAGATGATACATATACATGG
Found at i:32697640 original size:14 final size:16
Alignment explanation
Indices: 32697623--32697654 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
32697613 TGTAACCTTC
32697623 AAAAT-TTTAAAA-AT
1 AAAATATTTAAAATAT
32697637 AAAATATTTAAAATAT
1 AAAATATTTAAAATAT
32697653 AA
1 AA
32697655 TGTTACAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 7 0.44
16 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATATTTAAAATAT
Found at i:32697851 original size:13 final size:13
Alignment explanation
Indices: 32697833--32697873 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 13
32697823 TAAAAGAAAG
32697833 TAAAAATATTTTT
1 TAAAAATATTTTT
32697846 TAAAAATATTTTTT
1 TAAAAATA-TTTTT
32697860 TAATTAAATATTTT
1 TAA--AAATATTTT
32697874 ATAATAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.32
14 8 0.32
15 4 0.16
16 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAAAATATTTTT
Found at i:32697858 original size:14 final size:14
Alignment explanation
Indices: 32697833--32697873 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 14
32697823 TAAAAGAAAG
32697833 TAAAAATA-TTTTT
1 TAAAAATATTTTTT
32697846 TAAAAATATTTTTT
1 TAAAAATATTTTTT
32697860 TAATTAAATATTTT
1 TAA--AAATATTTT
32697874 ATAATAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.32
14 8 0.32
16 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TAAAAATATTTTTT
Found at i:32697881 original size:14 final size:14
Alignment explanation
Indices: 32697836--32697882 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
32697826 AAGAAAGTAA
32697836 AAATATTTTTTAA-
1 AAATATTTTTTAAT
32697849 AAATATTTTTTTAATT
1 AAATA-TTTTTTAA-T
*
32697865 AAATATTTTATAAT
1 AAATATTTTTTAAT
32697879 AAAT
1 AAAT
32697883 GAAATTAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 5 0.17
14 13 0.43
15 7 0.23
16 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AAATATTTTTTAAT
Found at i:32698745 original size:2 final size:2
Alignment explanation
Indices: 32698738--32698768 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
32698728 CACCTTTTAC
*
32698738 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32698769 AAAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:32699806 original size:60 final size:60
Alignment explanation
Indices: 32699713--32699833 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
32699703 ATAATATTAT
* * *
32699713 GATTTGAATCACACACTTGATTTAAAGGGTGTAGTGCTCTCTTTGACTGAAAAAACTCAA
1 GATTTAAATCACACACTAGATTTAAAGGGTGTAGTGCTCTCTTTGACCGAAAAAACTCAA
*
32699773 GATTTAAATCACACACTAGATTTAAAGGGTGTAGTGCTCTCTTTTACCGAAAAAACTCAA
1 GATTTAAATCACACACTAGATTTAAAGGGTGTAGTGCTCTCTTTGACCGAAAAAACTCAA
32699833 G
1 G
32699834 CGATTTTGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (60 bp):
GATTTAAATCACACACTAGATTTAAAGGGTGTAGTGCTCTCTTTGACCGAAAAAACTCAA
Found at i:32701025 original size:19 final size:18
Alignment explanation
Indices: 32701003--32701042 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
32700993 TGAATAAAAC
*
32701003 TTATCTATCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
32701022 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
32701040 TTA
1 TTA
32701043 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:32705639 original size:18 final size:19
Alignment explanation
Indices: 32705593--32705640 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
32705583 TTAGAATATG
* *
32705593 AATAAAACTTATCTACCTA
1 AATAAAATTTATCTACATA
32705612 AATAAAATTTATCTACATA
1 AATAAAATTTATCTACATA
32705631 AAT-AAATTTA
1 AATAAAATTTA
32705641 AAATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (19 bp):
AATAAAATTTATCTACATA
Found at i:32721342 original size:32 final size:30
Alignment explanation
Indices: 32721286--32721345 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 30
32721276 TAACATCTAG
32721286 TTAAATAAAACTTTTAAATAATTTAATAAT
1 TTAAATAAAACTTTTAAATAATTTAATAAT
32721316 TTAAATAAAA-TAATTTAAAATAATTTAATA
1 TTAAATAAAACT--TTT-AAATAATTTAATA
32721346 TTTTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 1 0.04
30 10 0.37
31 3 0.11
32 13 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
TTAAATAAAACTTTTAAATAATTTAATAAT
Found at i:32722195 original size:3 final size:3
Alignment explanation
Indices: 32722187--32722222 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
32722177 TTCTTTTGTT
32722187 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32722223 AATGAGAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32725601 original size:22 final size:23
Alignment explanation
Indices: 32725561--32725606 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
32725551 TGGTATAAAC
* *
32725561 AAAAACTCGAAATATCAAATTGA
1 AAAAACTCGAAATACCAAACTGA
*
32725584 AAAAACTC-AAGTACCAAACTGA
1 AAAAACTCGAAATACCAAACTGA
32725606 A
1 A
32725607 CATTAAATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (23 bp):
AAAAACTCGAAATACCAAACTGA
Found at i:32730124 original size:46 final size:46
Alignment explanation
Indices: 32730057--32730155 Score: 189
Period size: 46 Copynumber: 2.2 Consensus size: 46
32730047 TTAGCCTGTA
32730057 AGATCGAGAGATAAACTAGATTAACTTGTCTAATTTGGTAAATTTG
1 AGATCGAGAGATAAACTAGATTAACTTGTCTAATTTGGTAAATTTG
*
32730103 AGATCGAGAGATAAACTAGATTAATTTGTCTAATTTGGTAAATTTG
1 AGATCGAGAGATAAACTAGATTAACTTGTCTAATTTGGTAAATTTG
32730149 AGATCGA
1 AGATCGA
32730156 AAGGTAAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.34
Consensus pattern (46 bp):
AGATCGAGAGATAAACTAGATTAACTTGTCTAATTTGGTAAATTTG
Found at i:32732853 original size:39 final size:40
Alignment explanation
Indices: 32732781--32732895 Score: 97
Period size: 40 Copynumber: 2.9 Consensus size: 40
32732771 CATCACATTG
* ** * *
32732781 AACCGAAGCTATCTCGGTATCACACATTTAGTGCCACATA-
1 AACCAAAGCTATCTC-AAATCACACACTAAGTGCCACATAT
* * * *
32732821 AACCAAAGCTATTTCAATTCACACACTAAGTGCTATATAT
1 AACCAAAGCTATCTCAAATCACACACTAAGTGCCACATAT
* * * *
32732861 AGCCGAAGCTATCTCAAAACGCACACTAAGTGCCA
1 AACCAAAGCTATCTCAAATCACACACTAAGTGCCA
32732896 AACATCGTAG
Statistics
Matches: 58, Mismatches: 16, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
39 17 0.29
40 41 0.71
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (40 bp):
AACCAAAGCTATCTCAAATCACACACTAAGTGCCACATAT
Found at i:32734488 original size:13 final size:13
Alignment explanation
Indices: 32734467--32734515 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
32734457 ATTATTCAAC
32734467 TAAAGAATTTGAT
1 TAAAGAATTTGAT
* * *
32734480 TAAATAATTTAAC
1 TAAAGAATTTGAT
32734493 TAAAGAATTTGAT
1 TAAAGAATTTGAT
*
32734506 TAAATAATTT
1 TAAAGAATTT
32734516 TTTTAAACAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (13 bp):
TAAAGAATTTGAT
Found at i:32734522 original size:26 final size:26
Alignment explanation
Indices: 32734464--32734515 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32734454 AGAATTATTC
32734464 AACTAAAGAATTTGATTAAATAATTT
1 AACTAAAGAATTTGATTAAATAATTT
32734490 AACTAAAGAATTTGATTAAATAATTT
1 AACTAAAGAATTTGATTAAATAATTT
32734516 TTTTAAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (26 bp):
AACTAAAGAATTTGATTAAATAATTT
Found at i:32734886 original size:31 final size:29
Alignment explanation
Indices: 32734851--32734908 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
32734841 AATAGTATTC
*
32734851 TATTAATTTTATATTAAAGTGATTATCTTAA
1 TATTAAATTTA-ATTAAA-TGATTATCTTAA
* *
32734882 TATTAAATTTAATTTAATGTTTATCTT
1 TATTAAATTTAATTAAATGATTATCTT
32734909 GTAGATAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.55
Consensus pattern (29 bp):
TATTAAATTTAATTAAATGATTATCTTAA
Found at i:32741537 original size:22 final size:22
Alignment explanation
Indices: 32741510--32741558 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
32741500 ATGAAATTAT
*
32741510 TAAATAAAATAAA-ATATAATAA
1 TAAAT-AAATAAATAAATAATAA
*
32741532 TAAATATATAAATAAATAATAA
1 TAAATAAATAAATAAATAATAA
32741554 TAAAT
1 TAAAT
32741559 TTATTTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAATAAATAAATAAATAATAA
Found at i:32741551 original size:19 final size:18
Alignment explanation
Indices: 32741512--32741553 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
32741502 GAAATTATTA
32741512 AATAAAATAAAATATAAT
1 AATAAAATAAAATATAAT
32741530 AATAAATATATAAATA-AAT
1 AATAAA-ATA-AAATATAAT
32741549 AATAA
1 AATAA
32741554 TAAATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 11 0.50
20 5 0.23
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAAAATAAAATATAAT
Found at i:32744602 original size:184 final size:184
Alignment explanation
Indices: 32744282--32744665 Score: 565
Period size: 184 Copynumber: 2.1 Consensus size: 184
32744272 ATTTATTTTC
32744282 TAATTTTTAGGATAACATTAATATTTATTTTCTTTCAAAATGTTTTAATCTTTTACTACATTCAA
1 TAATTTTTAGGATAACATTAATATTTATTTTCTTTCAAAATGTTTTAATCTTTTA-TACATTCAA
* * * *
32744347 AACCAATCAAATAGAAGATCGATCAAAGTGTTTGGATGATATATGAAATTTAAGTTTAAAAACTG
65 AACCAATCAAATAGAAGATCGATCAAAGTATTTGGATGATATATGAAATGTAAGTTCAAAAACTA
* *
32744412 CGATTCCATGTAAACGAATCGAATTCTA-TTTTTTATTTGATATATAATTAATTT
130 CGATTCCATGAAAACGAATCGAATTCTATTTTTTTATTTAATATATAATTAATTT
* * * *
32744466 TAATTCTTAGGATAACTGTTAATATTTATTTTCTTTTAAAATGTTTTAATCTTTCT-TACTTTCA
1 TAATTTTTAGGATAAC-ATTAATATTTATTTTCTTTCAAAATGTTTTAATCTTT-TATACATTCA
** * * *
32744530 AATTCAATCAAATTGAAGATCGATCGAAGTATTTGGATGGTATATGAAATGTAAGTTCAAAAACT
64 AAACCAATCAAATAGAAGATCGATCAAAGTATTTGGATGATATATGAAATGTAAGTTCAAAAACT
* *
32744595 ACGATTCCATGAAAACGAATTGAATTCTATTTTTTTATTTAATATATAATTACTTT
129 ACGATTCCATGAAAACGAATCGAATTCTATTTTTTTATTTAATATATAATTAATTT
*
32744651 TAATTTTTACGATAA
1 TAATTTTTAGGATAA
32744666 AAATAAATAT
Statistics
Matches: 178, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
184 105 0.59
185 72 0.40
186 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (184 bp):
TAATTTTTAGGATAACATTAATATTTATTTTCTTTCAAAATGTTTTAATCTTTTATACATTCAAA
ACCAATCAAATAGAAGATCGATCAAAGTATTTGGATGATATATGAAATGTAAGTTCAAAAACTAC
GATTCCATGAAAACGAATCGAATTCTATTTTTTTATTTAATATATAATTAATTT
Found at i:32747445 original size:14 final size:14
Alignment explanation
Indices: 32747414--32747444 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
32747404 AATTGTTTGC
32747414 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
32747428 TTTTCTTTTT-TTT
1 TTTTCTTTTTCTTT
32747441 TTTT
1 TTTT
32747445 TTTATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:32747596 original size:30 final size:30
Alignment explanation
Indices: 32747547--32747608 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
32747537 TGATATATGT
*
32747547 AAATATAATAATTATATTTTAACTCTTATAA
1 AAATATAATAATTAGATTTTAACT-TTATAA
* *
32747578 AAATAT-ATAATTCGATTTTAACTTTTTAA
1 AAATATAATAATTAGATTTTAACTTTATAA
32747607 AA
1 AA
32747609 TAAAATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 7 0.25
30 15 0.54
31 6 0.21
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (30 bp):
AAATATAATAATTAGATTTTAACTTTATAA
Found at i:32752469 original size:27 final size:28
Alignment explanation
Indices: 32752439--32752506 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 28
32752429 AGTGAATCCA
*
32752439 CACACTTAGTGCTATAAAATC-AGCTCG
1 CACACTTAGTGCTATAAAATCAAACTCG
* * *
32752466 CACACATAGTGCTATATAATCAAATTCG
1 CACACTTAGTGCTATAAAATCAAACTCG
32752494 CACACTTAGTGCT
1 CACACTTAGTGCT
32752507 GTACAATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 19 0.54
28 16 0.46
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATAAAATCAAACTCG
Found at i:32759761 original size:27 final size:28
Alignment explanation
Indices: 32759731--32759800 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
32759721 ATAGTGAATC
*
32759731 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
32759758 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
32759786 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32759801 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:32759877 original size:42 final size:42
Alignment explanation
Indices: 32759808--32759914 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
32759798 GCTGTACAAT
* * *
32759808 TTTAAACCCACACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32759850 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32759892 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
32759915 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:32767094 original size:27 final size:28
Alignment explanation
Indices: 32767064--32767133 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
32767054 ATAGTGAATC
*
32767064 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
32767091 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
32767119 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
32767134 GTACAATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 21 0.58
28 15 0.42
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:32767210 original size:42 final size:42
Alignment explanation
Indices: 32767141--32767247 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
32767131 GCTGTACAAT
* * *
32767141 TTTAAACCCACACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32767183 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32767225 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
32767248 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:32770969 original size:42 final size:42
Alignment explanation
Indices: 32770918--32771020 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 42
32770908 GTTTAACTTA
* * * *
32770918 TATGAGTTTCCGTTTAGCTATTT-TGAGCTTCAATTTAACCCT
1 TATGGGTTTCTGTTTAGCT-TTTACGAGCTTCAATTCAACCCT
* **
32770960 TATGGGTTTCTGTTCAGCTTTTACGAGCTTCCGTTCAACCCT
1 TATGGGTTTCTGTTTAGCTTTTACGAGCTTCAATTCAACCCT
32771002 TATGGGTTTCTGTTTAGCT
1 TATGGGTTTCTGTTTAGCT
32771021 CTCAAGAGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 3 0.06
42 49 0.94
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TATGGGTTTCTGTTTAGCTTTTACGAGCTTCAATTCAACCCT
Found at i:32771030 original size:42 final size:42
Alignment explanation
Indices: 32770954--32771038 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
32770944 GCTTCAATTT
* * *
32770954 AACCCTTATGGGTTTCTGTTCAGCTTTTACGAGCTTCCGTTC
1 AACCCTTATGGGTTTCTGTTCAGCTCTCAAGAGCTTCCGTTC
* *
32770996 AACCCTTATGGGTTTCTGTTTAGCTCTCAAGAGCTTCTGTTC
1 AACCCTTATGGGTTTCTGTTCAGCTCTCAAGAGCTTCCGTTC
32771038 A
1 A
32771039 GCCTTCGGGC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (42 bp):
AACCCTTATGGGTTTCTGTTCAGCTCTCAAGAGCTTCCGTTC
Found at i:32773118 original size:40 final size:40
Alignment explanation
Indices: 32773063--32773154 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
32773053 ATTGCATTTG
* *
32773063 GCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATAGATA
1 GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
32773103 GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
1 GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
32773143 GCACTAAGTGTG
1 GCACTAAGTGTG
32773155 TGAAATGGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
Found at i:32780588 original size:40 final size:39
Alignment explanation
Indices: 32780544--32780664 Score: 102
Period size: 40 Copynumber: 2.9 Consensus size: 39
32780534 GCGATTCAAA
32780544 ATAGCTTTGGTTATAAATAGCACTAAGTGTGCGAAATG-G
1 ATAGCTTTGGTTAT-AATAGCACTAAGTGTGCGAAATGAG
* * *
32780583 TATAGCTTCGGCTAT-ATGAGGCACTAAGTGTGCGATACTGAG
1 -ATAGCTTTGGTTATAAT-A-GCACTAAGTGTGCGA-AATGAG
* *
32780625 ATAGCTTTGGTTAATTGAGATGGCACTAAGTGTACGAAAT
1 ATAGCTTTGGTT-A-T-A-ATAGCACTAAGTGTGCGAAAT
32780665 CGTTCTAGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
38 2 0.03
39 1 0.02
40 27 0.42
41 13 0.20
42 2 0.03
43 3 0.05
44 14 0.22
46 2 0.03
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (39 bp):
ATAGCTTTGGTTATAATAGCACTAAGTGTGCGAAATGAG
Found at i:32789794 original size:21 final size:21
Alignment explanation
Indices: 32789768--32789826 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
32789758 TAAATAACAA
*
32789768 TAAAATAATAAAATATCTTAT
1 TAAAATAATAAAATATCTAAT
**
32789789 TAAAATAAT-ATTTATCTAAT
1 TAAAATAATAAAATATCTAAT
*
32789809 TAATAATTATAAAATATC
1 TAA-AATAATAAAATATC
32789827 ATCAACATCA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 11 0.37
21 14 0.47
22 5 0.17
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAAATAATAAAATATCTAAT
Found at i:32791471 original size:25 final size:25
Alignment explanation
Indices: 32791416--32791464 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32791406 TGCTAAACGG
* *
32791416 AGAGCATTAATGTGCTAATAATCAA
1 AGAGCACTAATGTACTAATAATCAA
32791441 AGAGCACTAATGTACTAATAATCA
1 AGAGCACTAATGTACTAATAATCA
32791465 GATAGCATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (25 bp):
AGAGCACTAATGTACTAATAATCAA
Found at i:32792566 original size:23 final size:22
Alignment explanation
Indices: 32792485--32792570 Score: 88
Period size: 21 Copynumber: 4.0 Consensus size: 22
32792475 CCTGATCAGT
*
32792485 ATACGACACA-TAAGTGCCTGA
1 ATACGACACACGAAGTGCCTGA
* *
32792506 A-ACAACACACGAGGTGCCTG-
1 ATACGACACACGAAGTGCCTGA
*
32792526 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAAGTGCCTG-A
**
32792549 ATACGACACATAAAGTGCCTGA
1 ATACGACACACGAAGTGCCTGA
32792571 TCGGCAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 8 0.15
21 27 0.50
22 1 0.02
23 18 0.33
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAAGTGCCTGA
Found at i:32792822 original size:38 final size:38
Alignment explanation
Indices: 32792753--32792847 Score: 95
Period size: 38 Copynumber: 2.5 Consensus size: 38
32792743 CACTCCAGTA
* *
32792753 TGACACCCAGTGCCTCATCGGATAGTTCGAAGCAAAGT
1 TGACACCCAATGCCTCATCGGATAGTCCGAAGCAAAGT
* * *
32792791 TGACACCCAATGTCTCATCGGCCTAG-CCGAAGTAAAG-
1 TGACACCCAATGCCTCATCGG-ATAGTCCGAAGCAAAGT
** *
32792828 TGGTACCCAATACCTCATCG
1 TGACACCCAATGCCTCATCG
32792848 AATCTATCCG
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
37 16 0.34
38 28 0.60
39 3 0.06
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (38 bp):
TGACACCCAATGCCTCATCGGATAGTCCGAAGCAAAGT
Found at i:32797146 original size:37 final size:37
Alignment explanation
Indices: 32797063--32797153 Score: 148
Period size: 37 Copynumber: 2.4 Consensus size: 37
32797053 TTATTACGAA
32797063 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
32797100 GT-TGTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCT-TACCCGGACATAATCTCCACACGTAGTCATCGG
*
32797137 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
32797154 TTTCTAAGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
36 1 0.02
37 43 0.86
38 6 0.12
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:32797291 original size:49 final size:49
Alignment explanation
Indices: 32797224--32797376 Score: 279
Period size: 49 Copynumber: 3.1 Consensus size: 49
32797214 TACCACATAT
*
32797224 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
32797273 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
32797322 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
32797371 ATATAT
1 ATATAT
32797377 TATTATGTAC
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 101 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:32804821 original size:46 final size:46
Alignment explanation
Indices: 32804416--32804820 Score: 578
Period size: 46 Copynumber: 8.8 Consensus size: 46
32804406 TGATGTCATA
* * * * * *
32804416 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACAC-ATTTCATATCACGTTGCCATG
** *** * *
32804462 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTTCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGTTGCCATG
* * * *
32804509 GTATCTTTCAACCATGGTCTTACTCATTTCGTGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
**
32804555 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
32804601 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
32804647 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
*
32804693 GTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
* *
32804739 GTATCTTTCAACCATGGTTTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
*
32804785 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCA
32804821 GAGAGCACAC
Statistics
Matches: 334, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 296 0.89
47 38 0.11
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
Found at i:32809724 original size:40 final size:40
Alignment explanation
Indices: 32809657--32809753 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
32809647 CAGCTATTGG
32809657 TGGCACTTAGTGTGCGAATCAACATAGCTTCGACTATATA
1 TGGCACTTAGTGTGCGAATCAACATAGCTTCGACTATATA
* * ** * * * *
32809697 TGGCACTTAGTGTGTGATTTGAGATAGCTTTGGCTATGTA
1 TGGCACTTAGTGTGCGAATCAACATAGCTTCGACTATATA
*
32809737 CGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
32809754 GATATCAAGT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATCAACATAGCTTCGACTATATA
Found at i:32809780 original size:28 final size:28
Alignment explanation
Indices: 32809738--32809849 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 28
32809728 GGCTATGTAC
*
32809738 GGCACTTAGTGTGCGAGATATCAAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
* *
32809766 GGCACTTAGTATGCGAGATATCGAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
* * * *
32809794 GGCATTTAGTGTACGAAATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
* * *
32809822 GACACTTAGTGTGCGAGACATTGAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
32809850 TCAACTGCAT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCGAGTAT
Found at i:32810541 original size:19 final size:19
Alignment explanation
Indices: 32810517--32810554 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32810507 AATTTAATTT
32810517 TTTTA-TATGATATTTATTA
1 TTTTATTATGAT-TTTATTA
*
32810536 TTTTATTATTATTTTATTA
1 TTTTATTATGATTTTATTA
32810555 GTATATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTATTATGATTTTATTA
Found at i:32810544 original size:11 final size:11
Alignment explanation
Indices: 32810530--32810554 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32810520 TATATGATAT
32810530 TTATTATTTTA
1 TTATTATTTTA
32810541 TTATTATTTTA
1 TTATTATTTTA
32810552 TTA
1 TTA
32810555 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:32817257 original size:78 final size:81
Alignment explanation
Indices: 32817137--32817318 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
32817127 TACTCGTTCA
* *
32817137 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
32817200 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
32817216 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
32817279 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
32817295 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32817319 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:32817318 original size:40 final size:40
Alignment explanation
Indices: 32817135--32817318 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
32817125 GCTACTCGTT
*
32817135 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32817175 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
32817215 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
32817253 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32817294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32817319 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32819482 original size:46 final size:46
Alignment explanation
Indices: 32819255--32819482 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
32819245 TTTGACATGA
* * * * * * *
32819255 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * *
32819301 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCATGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
32819347 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
32819393 TGGCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
32819439 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
32819483 AGAGCACACT
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 165 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:32821424 original size:21 final size:21
Alignment explanation
Indices: 32821400--32821446 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
32821390 AAGCTTCACA
32821400 TCTTTGATTTTCCCTTTTT-TT
1 TCTTT-ATTTTCCCTTTTTCTT
* *
32821421 TCTTTCTTTTCTCTTTTTCTT
1 TCTTTATTTTCCCTTTTTCTT
32821442 TCTTT
1 TCTTT
32821447 CCTTCCCCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (21 bp):
TCTTTATTTTCCCTTTTTCTT
Found at i:32821436 original size:20 final size:21
Alignment explanation
Indices: 32821407--32821447 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
32821397 ACATCTTTGA
32821407 TTTTCCCTTTTT-TTTCTTTC
1 TTTTCCCTTTTTCTTTCTTTC
*
32821427 TTTTCTCTTTTTCTTTCTTTC
1 TTTTCCCTTTTTCTTTCTTTC
32821448 CTTCCCCTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCCCTTTTTCTTTCTTTC
Found at i:32826162 original size:40 final size:40
Alignment explanation
Indices: 32826107--32826199 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
32826097 CAGCTATTGG
32826107 TGGCACTTAGTGTGCGAATCGACG-TAGCTTCGACTATATA
1 TGGCACTTAGTGTGCGAATCGA-GATAGCTTCGACTATATA
* * * *
32826147 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGAATCGAGATAGCTTCGACTATATA
* *
32826187 CGACACTTAGTGT
1 TGGCACTTAGTGT
32826200 ACGAGATATC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 45 0.98
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATCGAGATAGCTTCGACTATATA
Found at i:32827107 original size:15 final size:15
Alignment explanation
Indices: 32827089--32827117 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32827079 CACACTATCA
32827089 TGTTACACGGTCGTG
1 TGTTACACGGTCGTG
32827104 TGTTACACGGTCGT
1 TGTTACACGGTCGT
32827118 ATGTCCCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.31, T:0.34
Consensus pattern (15 bp):
TGTTACACGGTCGTG
Found at i:32829112 original size:22 final size:22
Alignment explanation
Indices: 32829087--32829133 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
32829077 AAAACATGTT
* *
32829087 AATTTATACTTATTGCATGAAA
1 AATTTAAACTTAATGCATGAAA
*
32829109 AATTTAAACTTAATGCATTAAA
1 AATTTAAACTTAATGCATGAAA
32829131 AAT
1 AAT
32829134 GTCATTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (22 bp):
AATTTAAACTTAATGCATGAAA
Found at i:32834039 original size:10 final size:9
Alignment explanation
Indices: 32834013--32834037 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32834003 CAATATTAGG
32834013 TTTTTTTAT
1 TTTTTTTAT
32834022 TTTTTTTAT
1 TTTTTTTAT
32834031 TTTTTTT
1 TTTTTTT
32834038 TAAATTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:32844909 original size:13 final size:13
Alignment explanation
Indices: 32844891--32844915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32844881 ACAATTTTTG
32844891 TTTATTATTATTA
1 TTTATTATTATTA
32844904 TTTATTATTATT
1 TTTATTATTATT
32844916 TTAGAGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTATTATTA
Found at i:32845014 original size:24 final size:25
Alignment explanation
Indices: 32844976--32845024 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
32844966 TAATTTTTTT
32844976 AAAAATTTATTTTTAA-ATTGTTAG
1 AAAAATTTATTTTTAATATTGTTAG
*
32845000 AAAACATTTA-TTTTAATATTTTTAG
1 AAAA-ATTTATTTTTAATATTGTTAG
32845025 TGTATTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (25 bp):
AAAAATTTATTTTTAATATTGTTAG
Found at i:32855238 original size:27 final size:27
Alignment explanation
Indices: 32855202--32855284 Score: 157
Period size: 27 Copynumber: 3.1 Consensus size: 27
32855192 TACATATAAG
32855202 TTGTCATGCTAATATCGTTAAAAAAAA
1 TTGTCATGCTAATATCGTTAAAAAAAA
32855229 TTGTCATGCTAATATCGTTAAAAAAAA
1 TTGTCATGCTAATATCGTTAAAAAAAA
*
32855256 TTATCATGCTAATATCGTTAAAAAAAA
1 TTGTCATGCTAATATCGTTAAAAAAAA
32855283 TT
1 TT
32855285 AACTTTTTTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.35
Consensus pattern (27 bp):
TTGTCATGCTAATATCGTTAAAAAAAA
Found at i:32856723 original size:56 final size:56
Alignment explanation
Indices: 32856634--32856743 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
32856624 ACTGAGTTGA
* *
32856634 TGACCAATCAAATTAAGAGTGACACTACCTTAATAAATTCTTAAATATATATATGT
1 TGACCAATCAAATTAAGAATGACACCACCTTAATAAATTCTTAAATATATATATGT
* *
32856690 TGACCAATCAAATTAAGAATGACACCACTTTAATAAATTCTTGAATATATATAT
1 TGACCAATCAAATTAAGAATGACACCACCTTAATAAATTCTTAAATATATATAT
32856744 AAGTTCACAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.34
Consensus pattern (56 bp):
TGACCAATCAAATTAAGAATGACACCACCTTAATAAATTCTTAAATATATATATGT
Found at i:32858390 original size:2 final size:2
Alignment explanation
Indices: 32858383--32858409 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32858373 AAAGCACTGC
32858383 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32858410 CTTTAATGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32859792 original size:2 final size:2
Alignment explanation
Indices: 32859785--32859823 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
32859775 GAGTAAATAC
32859785 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32859824 ACGATCAGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32861199 original size:15 final size:15
Alignment explanation
Indices: 32861181--32861235 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
32861171 ATGATTAAAC
*
32861181 TTAATTAATTTAATA
1 TTAATTAATATAATA
32861196 TTAATTAATATAATA
1 TTAATTAATATAATA
* * *
32861211 TTTATCAAGATAAATA
1 TTAATTAATAT-AATA
32861227 TTAGATTAA
1 TTA-ATTAA
32861236 ATTTACTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 22 0.69
16 6 0.19
17 4 0.12
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (15 bp):
TTAATTAATATAATA
Found at i:32861335 original size:20 final size:18
Alignment explanation
Indices: 32861288--32861336 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
32861278 CAAGTTAAAC
32861288 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
32861305 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
32861325 ATTAAATTAATA
1 ATTAAATTAATA
32861337 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:32865998 original size:2 final size:2
Alignment explanation
Indices: 32865993--32866018 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32865983 GTACACACAC
32865993 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32866019 GTATGTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32867255 original size:12 final size:12
Alignment explanation
Indices: 32867238--32867265 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32867228 TCAATTTAAA
32867238 GCTACTTCGATT
1 GCTACTTCGATT
32867250 GCTACTTCGATT
1 GCTACTTCGATT
32867262 GCTA
1 GCTA
32867266 GTGTTGGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (12 bp):
GCTACTTCGATT
Found at i:32870157 original size:14 final size:13
Alignment explanation
Indices: 32870133--32870162 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
32870123 GGTTGTTTAT
32870133 TAAACTAATTAAC
1 TAAACTAATTAAC
32870146 TAAACTTAATTAAC
1 TAAAC-TAATTAAC
32870160 TAA
1 TAA
32870163 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:32874872 original size:15 final size:15
Alignment explanation
Indices: 32874854--32874897 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
32874844 GAAGCTAAAA
32874854 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
32874869 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
32874884 ATACAA-AAATCCAA
1 ATA-AAGAAATCCAA
32874898 TTTACAACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 24 0.92
16 2 0.08
ACGTcount: A:0.59, C:0.16, G:0.09, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32877844 original size:46 final size:49
Alignment explanation
Indices: 32877621--32877863 Score: 267
Period size: 49 Copynumber: 5.0 Consensus size: 49
32877611 GTAGCCGAAG
** * *
32877621 CTATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* * * *
32877670 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AA
* * * *
32877720 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAAGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA
* * * *
32877770 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTAC-A-A-ATGTGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* * *
32877817 CAATCTGGTACTCGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
32877864 TCACAATAGC
Statistics
Matches: 159, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
46 29 0.18
47 4 0.03
48 6 0.04
49 47 0.30
50 44 0.28
51 29 0.18
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:32877853 original size:97 final size:99
Alignment explanation
Indices: 32877635--32877863 Score: 313
Period size: 97 Copynumber: 2.3 Consensus size: 99
32877625 CTGGTATGCA
* * * *
32877635 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
32877700 GTACTATACACGTGACCTAACCATCTGATACACG
66 GTACTATACACGTGACCTAACAATCTGATACACG
* *
32877734 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * *
32877799 TAGTAC-A-A-ATGTGACC-AACAATCTGGTACTCG
64 TAGTACTATACACGTGACCTAACAATCTGATACACG
*
32877831 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACC
32877864 TCACAATAGC
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
96 1 0.01
97 43 0.37
98 7 0.06
99 30 0.26
100 4 0.03
101 31 0.27
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTATACACGTGACCTAACAATCTGATACACG
Found at i:32883093 original size:52 final size:52
Alignment explanation
Indices: 32883015--32883120 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
32883005 TCTCTAGTGA
*
32883015 ATGGTCAGGGTGGTTCGAGGAGCTCGTATTCCTCATTCTTGCTATCAATCTC
1 ATGGTCAGGGTGGTTCGAGGAGCTCGTATTCCTCATTCCTGCTATCAATCTC
32883067 ATGGTCAGGGTGGTTCGAGGAGCTCGTATTCCTCATTCCTGCTATCAATCTC
1 ATGGTCAGGGTGGTTCGAGGAGCTCGTATTCCTCATTCCTGCTATCAATCTC
32883119 AT
1 AT
32883121 CAAAATAAGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.18, C:0.24, G:0.25, T:0.34
Consensus pattern (52 bp):
ATGGTCAGGGTGGTTCGAGGAGCTCGTATTCCTCATTCCTGCTATCAATCTC
Found at i:32886084 original size:14 final size:13
Alignment explanation
Indices: 32886060--32886089 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
32886050 GGTTGTTTAT
32886060 TAAACTAATTAAC
1 TAAACTAATTAAC
32886073 TAAACTTAATTAAC
1 TAAAC-TAATTAAC
32886087 TAA
1 TAA
32886090 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:32886537 original size:14 final size:14
Alignment explanation
Indices: 32886518--32886544 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32886508 TAATTCAAGC
32886518 ATTAAGAACAAATA
1 ATTAAGAACAAATA
32886532 ATTAAGAACAAAT
1 ATTAAGAACAAAT
32886545 CAAGTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (14 bp):
ATTAAGAACAAATA
Found at i:32889875 original size:35 final size:35
Alignment explanation
Indices: 32889836--32889911 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
32889826 ACAAGTAAGC
*
32889836 TTATATCAAACTTGAGTATTCGGTTACATGTGAAT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
** * * *
32889871 TTATATTGAACATGTGTATTTGGTTACATGTGAGT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
32889906 TTATAT
1 TTATAT
32889912 TGAGCTTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (35 bp):
TTATATCAAACATGAGTATTCGGTTACATGTGAAT
Found at i:32890633 original size:16 final size:16
Alignment explanation
Indices: 32890612--32890648 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
32890602 TTTATCTTTG
*
32890612 AACTTTTGGCATGTAT
1 AACTTTTAGCATGTAT
32890628 AAC-TTTAGCATGTAT
1 AACTTTTAGCATGTAT
32890643 AACTTT
1 AACTTT
32890649 AGCCATGCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (16 bp):
AACTTTTAGCATGTAT
Found at i:32890640 original size:15 final size:15
Alignment explanation
Indices: 32890620--32890651 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
32890610 TGAACTTTTG
32890620 GCATGTATAACTTTA
1 GCATGTATAACTTTA
32890635 GCATGTATAACTTTA
1 GCATGTATAACTTTA
32890650 GC
1 GC
32890652 CATGCGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (15 bp):
GCATGTATAACTTTA
Done.