Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 127 of 345
Found at i:34112963 original size:80 final size:81
Alignment explanation
Indices: 34112795--34112983 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
34112785 GCTGGAAATT
* * * *
34112795 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
34112860 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
34112876 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
34112939 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
34112955 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
34112984 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:34114730 original size:20 final size:21
Alignment explanation
Indices: 34114705--34114744 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
34114695 TTTTTGAAAT
*
34114705 AGGGC-ACACGTCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
34114725 AGGGCAACGCGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
34114745 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.17, C:0.28, G:0.42, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:34116080 original size:48 final size:47
Alignment explanation
Indices: 34116020--34116163 Score: 123
Period size: 48 Copynumber: 3.1 Consensus size: 47
34116010 AAGCTGACGC
* * *
34116020 CATGTCCTAGACAGGTATTACACTAGCTTGTATATCGCGAGGCCGATG
1 CATGTCC-AGACATGTATTACACTAGCTTATATATCTCGAGGCCGATG
* * * * * *
34116068 CATGTCTCAGACATGTCTTA-GCTAGC-TCTA-GTCTCAATGCCGATG
1 CATGTC-CAGACATGTATTACACTAGCTTATATATCTCGAGGCCGATG
* * * *
34116113 CATGTCCCAGACATATTTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGT-CCAGACATGTATTACACTAGCTTATATATCTCGAGGCCGATG
34116161 CAT
1 CAT
34116164 ATCCCAAACG
Statistics
Matches: 74, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
45 27 0.36
46 8 0.11
47 7 0.09
48 31 0.42
49 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (47 bp):
CATGTCCAGACATGTATTACACTAGCTTATATATCTCGAGGCCGATG
Found at i:34117960 original size:16 final size:16
Alignment explanation
Indices: 34117939--34117973 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
34117929 ACAGTAAGAC
34117939 CATATTTGGGATATGG
1 CATATTTGGGATATGG
34117955 CATATTTGGGATATGG
1 CATATTTGGGATATGG
34117971 CAT
1 CAT
34117974 CCAGATGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.37
Consensus pattern (16 bp):
CATATTTGGGATATGG
Found at i:34122252 original size:50 final size:50
Alignment explanation
Indices: 34122137--34122579 Score: 362
Period size: 50 Copynumber: 8.8 Consensus size: 50
34122127 TGAGAACTCT
* * ** * *
34122137 TGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAA-ATAG--TTAGGTCACA
*
34122189 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACA
* * * * * * *
34122239 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGACA-ACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AAATAGTT-AGGTCACA
* * *
34122290 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACA
* * *
34122340 TGTGTTA-TACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGTCCCA
1 TGTG-TAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACA
* * * * * * * * *
34122390 TGTGTAGGACTAAGTGCAGGCTCCTATGCGTACTTGACA-ACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC--CAAATAGTT-AGGTCACA
* * * **
34122441 TGTGTAGTACTAAGTGCAGGCAACTACGTGTATCAAATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACA
* * * *
34122491 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA--AAAGATTCTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGT-TAGGTCACA
* * *
34122540 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
34122580 CTTCGGTTAC
Statistics
Matches: 308, Mismatches: 67, Indels: 33
0.75 0.16 0.08
Matches are distributed among these distances:
48 4 0.01
49 43 0.14
50 147 0.48
51 74 0.24
52 38 0.12
53 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACA
Found at i:34122313 original size:101 final size:101
Alignment explanation
Indices: 34122184--34122365 Score: 312
Period size: 101 Copynumber: 1.8 Consensus size: 101
34122174 TGGTTTTAGG
* *
34122184 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCTCATGTG-TAGTA
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAAATAGTTAGGTCACATGTGTTA-TA
34122248 CTAAGTGTAGGCTACTATGCGTACCCGACAACTTCAA
65 CTAAGTGTAGGCTACTATGCGTACCCGACAACTTCAA
* *
34122285 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTTAGGTCACATGTGTTATAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAAATAGTTAGGTCACATGTGTTATAC
34122350 TAAGTGTAGGCTACTA
66 TAAGTGTAGGCTACTA
34122366 CGTGTACCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
101 74 0.97
102 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAAATAGTTAGGTCACATGTGTTATAC
TAAGTGTAGGCTACTATGCGTACCCGACAACTTCAA
Found at i:34122417 original size:151 final size:152
Alignment explanation
Indices: 34122137--34122573 Score: 625
Period size: 151 Copynumber: 2.9 Consensus size: 152
34122127 TGAGAACTCT
* * * *
34122137 TGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTTTAGGTCACGTGTG-TAGTACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAA-ATGG--TTAGGTCACATGTGTTAGTACT
* * *
34122200 AAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCTCATGTGTAGTACTAAGTGTAGGCTACTA
63 AAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTA
34122265 TGCGTACCCGACAACTTCAATCACG
128 TGCGTACCCGACAACTTCAATCACG
*
34122290 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTTAGGTCACATGTGTTA-TACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACATGTGTTAGTACTAAG
* * *
34122354 TGTAGGCTACTACGTGTACCAGATAGTTAGGTCCCATGTGTAGGACTAAGTGCAGGCTCCTATGC
66 TGCAGGCTACTACGTGTACCAGATAGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTATGC
**
34122419 GTACTTGACAACTTCAATCACG
131 GTACCCGACAACTTCAATCACG
*
34122441 TGTGTAGTACTAAGTGCAGGCAACTACGTGTATCAAATGGTTAGGT--CATGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACATGTGT-TAGTACTAA
** ** *
34122504 GTGCAGGCTACTACGTGTAAAAGATTCTT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
65 GTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTATG
34122568 CGTACC
130 CGTACC
34122574 AGATAGCTTC
Statistics
Matches: 256, Mismatches: 24, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
149 7 0.03
150 39 0.15
151 173 0.68
152 2 0.01
153 32 0.12
154 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACATGTGTTAGTACTAAG
TGCAGGCTACTACGTGTACCAGATAGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTATGC
GTACCCGACAACTTCAATCACG
Found at i:34126326 original size:6 final size:6
Alignment explanation
Indices: 34126316--34126444 Score: 102
Period size: 6 Copynumber: 20.8 Consensus size: 6
34126306 TATCAAAACT
* * *
34126316 AGAATT AGAATC AGAATC AGAATC AGAATC AAAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
* * *
34126365 AGAATC AAAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
34126414 AGTATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC A-G-AATC AGAATC -AGAATC AGAAT
34126445 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
5 6 0.06
6 75 0.77
7 14 0.14
8 3 0.03
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:34126368 original size:31 final size:31
Alignment explanation
Indices: 34126333--34126444 Score: 197
Period size: 31 Copynumber: 3.6 Consensus size: 31
34126323 GAATCAGAAT
* *
34126333 CAGAATCAGAATCAAAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
34126364 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
34126395 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
34126426 CAGAATCAAAAATCAGAAT
1 CAGAATC-AAAATCAGAAT
34126445 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
31 67 0.86
32 11 0.14
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:34126644 original size:26 final size:27
Alignment explanation
Indices: 34126581--34126654 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
34126571 GCTCAGTTAT
*
34126581 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCAGATA
*
34126608 CAGATATTGTGCCAGAGCCACCAGA-A
1 CAGATATTGTGACAGAGCCACCAGATA
* * *
34126634 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
34126655 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 19 0.45
27 23 0.55
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGACAGAGCCACCAGATA
Found at i:34126841 original size:22 final size:22
Alignment explanation
Indices: 34126813--34126877 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
34126803 GCAAATACGT
34126813 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
*
34126835 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
34126857 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
34126878 AAGGCTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 4 0.11
22 31 0.84
23 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:34127361 original size:27 final size:27
Alignment explanation
Indices: 34127305--34127444 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 27
34127295 GGGCAAAATG
* * * * *
34127305 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
34127331 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
34127358 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
34127384 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
34127412 GTAATTCTACCCTACAAGGGG-ATTTCA
1 GTAATTCTACCCTAC-AGGGGTATTTCA
34127439 GTAATT
1 GTAATT
34127445 TTGTAAATCG
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.14
27 80 0.80
28 6 0.06
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:34127514 original size:27 final size:26
Alignment explanation
Indices: 34127484--34127823 Score: 329
Period size: 27 Copynumber: 12.6 Consensus size: 26
34127474 GTAAATCAAT
* * *
34127484 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAA-ACCAG
** ** *
34127511 GGTATTTTCATAATTTTACAGGTCGAG
1 GGTATTTTGGTAATTTTACA-AACCAG
** * *
34127538 GGTATTTCAGTAATTTCACAAATCAAG
1 GGTATTTTGGTAATTTTACAAA-CCAG
** *
34127565 TTTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
*
34127592 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
34127619 GGTATTTTGGTAATTTTACAAACCAG
1 GGTATTTTGGTAATTTTACAAACCAG
* * *
34127645 TGGTATTTTGGTAATTTTATAAACAAAA
1 -GGTATTTTGGTAATTTTACAAAC-CAG
*
34127673 GGTATTTTAGTAATTTTACAAACCAAG
1 GGTATTTTGGTAATTTTACAAACC-AG
* **
34127700 AGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACC-AG
34127727 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
* * *
34127754 GGTATTTTGGTGATTTTATAAACCAAT
1 GGTATTTTGGTAATTTTACAAACC-AG
*
34127781 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
34127808 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
34127824 GGTAAACTAA
Statistics
Matches: 260, Mismatches: 44, Indels: 18
0.81 0.14 0.06
Matches are distributed among these distances:
26 5 0.02
27 253 0.97
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAG
Found at i:34127622 original size:81 final size:81
Alignment explanation
Indices: 34127484--34127823 Score: 371
Period size: 81 Copynumber: 4.2 Consensus size: 81
34127474 GTAAATCAAT
* * * * *** * *
34127484 GGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTTCATAATTTTACAGGTCGAGGGTATTTCAG
1 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAG
* *
34127548 TAATTTCACAAATCAAG
65 TAATTTTACAAACCAAG
** * *
34127565 TTTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGT
34127630 AATTTTACAAACC-AG
66 AATTTTACAAACCAAG
* * ** * *
34127645 TGGTATTTTGGTAATTTTATAAACAAAAGGTATTTT-AGTAATTTTACAAACCAAGAGTATTTTG
1 -GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA-TAATTTTACAAACCAAGGGTATTTTA
**
34127709 GTAATTTTGTAAACCAAG
64 GTAATTTTACAAACCAAG
* * * * *
34127727 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAATGGTATTTTAGT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGT
*
34127792 AATTTTACAAACCAGG
66 AATTTTACAAACCAAG
34127808 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
34127824 GGTAAACTAA
Statistics
Matches: 216, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.01
81 207 0.96
82 6 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGT
AATTTTACAAACCAAG
Found at i:34127830 original size:27 final size:27
Alignment explanation
Indices: 34127567--34127823 Score: 352
Period size: 27 Copynumber: 9.5 Consensus size: 27
34127557 AAATCAAGTT
*
34127567 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34127594 TATTTTGATAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34127621 TATTTTGGTAATTTTACAAACCAGTGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * **
34127648 TATTTTGGTAATTTTATAAACAAAAGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
34127675 TATTTTAGTAATTTTACAAACCAAGAG
1 TATTTTGGTAATTTTACAAACCAGGGG
** *
34127702 TATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
34127729 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * **
34127756 TATTTTGGTGATTTTATAAACCAATGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34127783 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
34127810 TATTTTGGTAATTT
1 TATTTTGGTAATTT
34127824 GGTAAACTAA
Statistics
Matches: 200, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCAGGGG
Found at i:34127830 original size:54 final size:54
Alignment explanation
Indices: 34127567--34127823 Score: 388
Period size: 54 Copynumber: 4.8 Consensus size: 54
34127557 AAATCAAGTT
* * * *
34127567 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGG
* * *
34127621 TATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTATAAACAAAAGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGG
* * * *
34127675 TATTTTAGTAATTTTACAAACCAAGAGTATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGG
* *
34127729 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAATGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGG
*
34127783 TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
34127824 GGTAAACTAA
Statistics
Matches: 181, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 181 1.00
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGG
Found at i:34129319 original size:2 final size:2
Alignment explanation
Indices: 34129312--34129346 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
34129302 ATTCTATTCG
34129312 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34129347 GGGGAAGGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34132608 original size:50 final size:50
Alignment explanation
Indices: 34132441--34132823 Score: 346
Period size: 50 Copynumber: 7.6 Consensus size: 50
34132431 ATTGTGAGAA
* * * * * *
34132441 CACATGTGTAGTACTATGTGCAGGCGACAATGTGT-TTATGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GATAG--TTAGGT
* * * * * *
34132493 CACATGTGTAGTA-TAAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-GT
1 CACATGTGTAGTACT-AAGTGCAGGCTACTACGTGTATCAGA-TAGTT-AGGT
* *
34132544 CACATGTGTAGTACTAGGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGT
* * *
34132594 CACGTGTGTTGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGT
* * * * * *
34132644 CACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTC-GACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGA-TAGTT-AGGT
* * *
34132695 CACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGT
* * * * *
34132745 CACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGT
* *
34132794 CGCATGTGTAGTACTAAGTACAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
34132824 TGCTACCAGT
Statistics
Matches: 270, Mismatches: 50, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
49 31 0.11
50 128 0.47
51 77 0.29
52 34 0.13
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGT
Found at i:34132631 original size:101 final size:100
Alignment explanation
Indices: 34132441--34132823 Score: 364
Period size: 101 Copynumber: 3.8 Consensus size: 100
34132431 ATTGTGAGAA
* * * * *
34132441 CACATGTGTAGTACTATGTGCAGGCGACAATGTGT-TTATGATGGTTTTAGGTCACATGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GATGG--TTAGGTCACATGTGTAGT
* * * * *
34132505 A-TAAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-GT
63 ACT-AAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * *
34132544 CACATGTGTAGTACTAGGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTTGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACT
34132609 AAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
66 AAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *** * *
34132644 CACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTC-GACAACTTCA-ATCACGTGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGA-TGGTT-AGGTCACATGTGTAGT
* * *
34132707 ACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGT
63 ACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * *
34132745 CACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCGGATTGTT-GGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACT
*
34132809 AAGTACAGGCTACTA
66 AAGTGCAGGCTACTA
34132824 TGCTACCAGT
Statistics
Matches: 234, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
99 28 0.12
100 42 0.18
101 124 0.53
102 2 0.01
103 36 0.15
104 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:34132761 original size:151 final size:151
Alignment explanation
Indices: 34132487--34132830 Score: 550
Period size: 151 Copynumber: 2.3 Consensus size: 151
34132477 TATGATGGTT
*
34132487 TTAGGTCACATGTGTAGTA-TAAAGTGCAGGCTACTATGCGTACCCGACAACTTCAGTCACATGT
1 TTAGGTCACATGTGTAGTACT-AAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACATGT
* * *
34132551 GTAGTACTAGGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTTGTACTAAGTGCA
65 GTAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCA
34132616 GGCTACTACGTGTACCAGATAG
130 GGCTACTACGTGTACCAGATAG
* * *
34132638 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGACAACTTCAATCACGTGTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACATGTG
*
34132703 TAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCTG
66 TAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAG
* *
34132768 GCTACTACGTGTACCGGATTG
131 GCTACTACGTGTACCAGATAG
* *
34132789 TT-GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGC-TACC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
34132831 AGTTAGCTTT
Statistics
Matches: 178, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
149 3 0.02
150 33 0.19
151 141 0.79
152 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (151 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACATGTG
TAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAG
GCTACTACGTGTACCAGATAG
Found at i:34135249 original size:30 final size:30
Alignment explanation
Indices: 34135215--34135274 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
34135205 AGGCTATTCT
34135215 TCTGTTTCTACTAGATGTTGTTTTGTTTTA
1 TCTGTTTCTACTAGATGTTGTTTTGTTTTA
34135245 TCTGTTTCTACTAGATGTTGTTTTGTTTTA
1 TCTGTTTCTACTAGATGTTGTTTTGTTTTA
34135275 GATACATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.13, C:0.10, G:0.17, T:0.60
Consensus pattern (30 bp):
TCTGTTTCTACTAGATGTTGTTTTGTTTTA
Found at i:34138437 original size:42 final size:42
Alignment explanation
Indices: 34138379--34138501 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
34138369 TAGGGTTACT
* * *
34138379 GAGATTATGTGTAAGACCATATCTGGGATATGGCATTGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATTAATAC
* * *
34138421 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCAATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATTAATAC
* * *
34138464 GAGATTACATGTAAGACCATATCTGGAATCTGGCATTA
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATTA
34138502 GTATGGTACG
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATTAATAC
Found at i:34138477 original size:43 final size:42
Alignment explanation
Indices: 34138379--34138499 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
34138369 TAGGGTTACT
* ** *
34138379 GAGATTATGTGTAAGACCATATCTGGGATATGGCATTGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATAC
* *
34138421 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCAATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCAATAC
* * *
34138464 GAGATTACATGTAAGACCATATCTGGAATCTGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
34138500 TAGTATGGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATAC
Found at i:34146771 original size:48 final size:48
Alignment explanation
Indices: 34146404--34146770 Score: 378
Period size: 48 Copynumber: 7.7 Consensus size: 48
34146394 ATAAGGTCCC
* * ** * * *
34146404 GTGTAAGACCATCTCTGGGTTATGGCATCAGCATCGATATGTGAGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
* * *
34146452 GTGTAAGACCATATCTGGGATATGGCATCGGCGTTGATATGTGA-CTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
* * * ** *
34146499 GGGTAAGACCATGTCTAAGATATGGCATCAACGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
* * * * * * * *
34146547 GTGTTAGACCATGTTTGGGATAAGGCATCGACGTTGAAATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
* * * *
34146595 ATGTAAGACCATGTTTCGGACATGGCATCGGCGTTGAAATGTGAGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
* * * *
34146643 GTGTAAGGCCATATCTAGGACATGGCGTCGGC-TTGGATATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTT-GATATGTGAGCTA
* * * *
34146691 GTGTAAAATCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
*
34146739 GTGTAAGACCATGTCTCGGACATGGCATCGGC
1 GTGTAAGACCATGTCTAGGACATGGCATCGGC
34146771 ACTGACATGA
Statistics
Matches: 271, Mismatches: 45, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 43 0.16
48 226 0.83
49 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCTA
Found at i:34146794 original size:48 final size:48
Alignment explanation
Indices: 34146598--34146816 Score: 138
Period size: 48 Copynumber: 4.6 Consensus size: 48
34146588 TGAGCCAATG
* ** * * * *
34146598 TAAGACCATGTTTCGGACATGGCATCGGCGTTGAAATGTGAGCTAGTG
1 TAAGACCATGTCTCGGACATGGCATCGGCACTGACATGAGTGCTAGTA
* * * * * * * * * *
34146646 TAAGGCCATATCTAGGACATGGCGTCGGC-TTGGATATGTGAGCCAGTG
1 TAAGACCATGTCTCGGACATGGCATCGGCACT-GACATGAGTGCTAGTA
* * * * * * *
34146694 TAAAATCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCTAGTG
1 TAAGACCATGTCTCGGACATGGCATCGGCACTGACATGAGTGCTAGTA
* *
34146742 TAAGACCATGTCTCGGACATGGCATCGGCACTGACATGAGAT-TTCGTA
1 TAAGACCATGTCTCGGACATGGCATCGGCACTGACATGAG-TGCTAGTA
* *
34146790 TAAGACCATATC-CGAGATATGGCATCG
1 TAAGACCATGTCTCG-GACATGGCATCG
34146817 ACATGTGGAT
Statistics
Matches: 142, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
47 4 0.03
48 135 0.95
49 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTCGGACATGGCATCGGCACTGACATGAGTGCTAGTA
Found at i:34146812 original size:144 final size:143
Alignment explanation
Indices: 34146425--34146815 Score: 406
Period size: 144 Copynumber: 2.7 Consensus size: 143
34146415 TCTCTGGGTT
* * * * * *
34146425 ATGGCATCAGCATCGATATGTGAGCTAGTGTAAGACCATATCTGGGATATGGCATCGGCGTTGAT
1 ATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGCGTTGAA
* * * * *
34146490 ATGTGACTAGGGTAAGACCATGTCTAAGATATGGCATCAACGTTGATATGTGAGCCAGTGTTAGA
66 ATGTGACTAGTGTAAGACCATATCCAAGATATGGCATCAACGTTGATATGTGAGCCAGTGTAAAA
* * *
34146555 CCATGTTTGGGAT
131 CCATGTCTAGGAC
* * * * * * *
34146568 AAGGCATCGACGTTGAAATGTGAGCCAATGTAAGACCATGTTTCGGACATGGCATCGGCGTTGAA
1 ATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGCGTTGAA
* * * * * **
34146633 ATGTGAGCTAGTGTAAGGCCATATCTAGGACATGGCGTCGGC-TTGGATATGTGAGCCAGTGTAA
66 ATGTGA-CTAGTGTAAGACCATATCCAAGATATGGCATCAACGTT-GATATGTGAGCCAGTGTAA
*
34146697 AATCATGTCTAGGAC
129 AACCATGTCTAGGAC
* ** *
34146712 ATGGCATCGGCATTGATATGTGTGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGCACTGAC
1 ATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGCGTTGAA
* * * * *
34146777 ATGAGATTTCGTATAAGACCATATCCGAGATATGGCATC
66 ATGTGA-CTAGTGTAAGACCATATCCAAGATATGGCATC
34146816 GACATGTGGA
Statistics
Matches: 197, Mismatches: 49, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
143 60 0.30
144 137 0.70
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (143 bp):
ATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGCGTTGAA
ATGTGACTAGTGTAAGACCATATCCAAGATATGGCATCAACGTTGATATGTGAGCCAGTGTAAAA
CCATGTCTAGGAC
Found at i:34149508 original size:605 final size:589
Alignment explanation
Indices: 34148362--34149555 Score: 1834
Period size: 605 Copynumber: 2.0 Consensus size: 589
34148352 TGTTGTATGT
34148362 ATGAAAATGATGGCATGTGGTTGACATGTTAATGTCTTAGTTGTGGATGTTCGGTAGTAAGAATA
1 ATGAAAATGATGGCATGTGGTTGACATGTTAATGTCTTAGTTGTGGATGTTCGGTAGTAAGAATA
34148427 TGCTTGAACTGGTGTCATATGAAGTGTGTATGTATGTGGGCATAAGAGGGTGGCAAATGACTTGG
66 TGCTTGAACTGGTGTCATATGAAGTGTGTATGTATGTGGGCATAAGAGGGTGGCAAATGACTTGG
*
34148492 AAAATAGCCTTAAAATTGACCACAGGGCTGAGACATGATCGTTTCTTGGCCGTGCAAGGGACACG
131 AAAATAGCCTTAAAATTGACCACAGGGCTGAGACACGATCGTTTCTTGGCCGTGCAAGGGACACG
* * * * * * * * *
34148557 GCCATGGGACGTGGGTGTGTGCCCAGGTCGTGTGAAGTCTATATTTAATTTTGATAATTTAATTT
196 ACCATGGGACATCGGCGTGTGCCCAGGCCATGTGAAGTCTATATTTAATTTCGAGAATTTAATTC
34148622 GCGACACAGCCTAAATACACGGGCGTGTGCCTTGGCCGTGTGACCTCATTTGTTCATACATAAAT
261 GCGACACAGCCTAAATACACGGGCGTGTGCCTTGGCCGTGTGACCTCATTTGTTCATACATAAAT
* * * * * *
34148687 GGCAGAGAATTACATGGGTCAGGGACACGGGCGTGTGTGACCACACGGGCATGCCTCTATCCATA
326 GGCAGAGAATTACACGAGTCAAGGACACGGACGTGTGAGACCACACGGGCATGCCTCTATCCACA
* * *
34148752 CGGGAGTGTGGCCCTGATTTATGAGAAAATTTCCTAAGTTTCCAAAGTTGTCGGTTTAGTCTCGA
391 CGGGAGTGTGGCCCTGATTTATGAGAAAATTTCCTAAGTTTCCAAAGTTATCGGTTTACTCTCAA
* * * * *
34148817 GCCACTCCTGATGTATGTTTTGGGCCCCTTAATTCCATATAAGGGACGATATGCATGTGAATGAA
456 ACCACTCCCGATGCATGTTTTGGGCCCCTTAATCCCATATAAGGGACAATATGCATGTGAATGAA
* * *
34148882 ATGTTTTAAATTGAGTGAAATTTTATGGCTTGGTTATGCATGTGTGATTGTGATTAAGTTCAGTA
521 ATGTTTTAAATTGAATGAAATTTTATGGCCTGGTTATGCATGTGTGATTATGATTAAGTTCAGTA
34148947 ATGC
586 ATGC
34148951 ATGAAAATGAT-GCATGTGGTTGACATGTTAATGTCTTAGTTGTGGATGTTCGGTAG-ATAGAAT
1 ATGAAAATGATGGCATGTGGTTGACATGTTAATGTCTTAGTTGTGGATGTTCGGTAGTA-AGAAT
* *
34149014 ATGGTTGAATTGGTGTCATATGAAGTGTGTATGTATGTGGGCATAAGAGGGTGGCAAATGACTTG
65 ATGCTTGAACTGGTGTCATATGAAGTGTGTATGTATGTGGGCATAAGAGGGTGGCAAATGACTTG
* ** *
34149079 GAAAATAGCCTTGAAATTGATGACACGGGCTGAGACACGATCGTGTGTCTTGGCTGTGCAAGGGA
130 GAAAATAGCCTTAAAATTGACCACA-GGGCTGAGACACGATCGT-T-TCTTGGCCGTGCAAGGGA
* *
34149144 CACGACCATGGGACATCGGCGTGTTCCCAGGCCATGTGAAGTCTGTATTTAATTTCGAGAATTTA
192 CACGACCATGGGACATCGGCGTGTGCCCAGGCCATGTGAAGTCTATATTTAATTTCGAGAATTTA
*
34149209 ATTCGCGACACGGCCTAAATACACGGGCGTGTGCCTTGGCCGTGTGACCTCATTTGTTCATACAT
257 ATTCGCGACACAGCCTAAATACACGGGCGTGTGCCTTGGCCGTGTGACCTCATTTGTTCATACAT
* * *
34149274 AAATGGACAGAGATTTACACGAGTGAAGGACTCGGACGTGGGTGACCACACAGCCTACCCACACG
322 AAATGG-CAGAGAATTACACGAGTCAAGGACACGGACGT--GTG-------AG---A-CCACACG
*
34149339 GGCATGCCTCTATCTACACGGGAGTGTGGCCCTGATTTATGAGAAAATTTCCTAAGTTTCCAAAG
373 GGCATGCCTCTATCCACACGGGAGTGTGGCCCTGATTTATGAGAAAATTTCCTAAGTTTCCAAAG
34149404 TTATCGGTTTACTCTCAAACCACTCCCGATGCATGTTTTGGGCCCCTTAATCCCATATAAGGGAC
438 TTATCGGTTTACTCTCAAACCACTCCCGATGCATGTTTTGGGCCCCTTAATCCCATATAAGGGAC
*
34149469 AATATGGATGTGAATGAAATGTTTTAAATTGAATGAAATTTTATGGCCTGGTTATGCATGTGTGA
503 AATATGCATGTGAATGAAATGTTTTAAATTGAATGAAATTTTATGGCCTGGTTATGCATGTGTGA
*
34149534 TTATGATTAAGTTCGGTAATGC
568 TTATGATTAAGTTCAGTAATGC
34149556 CTCGTATTCT
Statistics
Matches: 545, Mismatches: 42, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
587 1 0.00
588 135 0.25
589 28 0.05
590 1 0.00
591 141 0.26
592 25 0.05
594 3 0.01
601 1 0.00
604 1 0.00
605 209 0.38
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (589 bp):
ATGAAAATGATGGCATGTGGTTGACATGTTAATGTCTTAGTTGTGGATGTTCGGTAGTAAGAATA
TGCTTGAACTGGTGTCATATGAAGTGTGTATGTATGTGGGCATAAGAGGGTGGCAAATGACTTGG
AAAATAGCCTTAAAATTGACCACAGGGCTGAGACACGATCGTTTCTTGGCCGTGCAAGGGACACG
ACCATGGGACATCGGCGTGTGCCCAGGCCATGTGAAGTCTATATTTAATTTCGAGAATTTAATTC
GCGACACAGCCTAAATACACGGGCGTGTGCCTTGGCCGTGTGACCTCATTTGTTCATACATAAAT
GGCAGAGAATTACACGAGTCAAGGACACGGACGTGTGAGACCACACGGGCATGCCTCTATCCACA
CGGGAGTGTGGCCCTGATTTATGAGAAAATTTCCTAAGTTTCCAAAGTTATCGGTTTACTCTCAA
ACCACTCCCGATGCATGTTTTGGGCCCCTTAATCCCATATAAGGGACAATATGCATGTGAATGAA
ATGTTTTAAATTGAATGAAATTTTATGGCCTGGTTATGCATGTGTGATTATGATTAAGTTCAGTA
ATGC
Found at i:34149903 original size:8 final size:8
Alignment explanation
Indices: 34149890--34149915 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
34149880 TATAAGCTAA
34149890 GAAATGTG
1 GAAATGTG
34149898 GAAATGTG
1 GAAATGTG
34149906 GAAATGTG
1 GAAATGTG
34149914 GA
1 GA
34149916 TTGAAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (8 bp):
GAAATGTG
Found at i:34154176 original size:39 final size:40
Alignment explanation
Indices: 34154008--34154267 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
34153998 TATTCGAATG
34154008 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
34154048 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
34154088 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
34154128 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-GTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
34154167 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
34154206 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* * *
34154246 ATCTCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
34154268 TACTTGGGTT
Statistics
Matches: 206, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 7 0.03
39 73 0.35
40 124 0.60
41 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:34161158 original size:39 final size:40
Alignment explanation
Indices: 34161038--34161217 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
34161028 TATTCGAATG
34161038 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
34161078 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
34161118 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
34161157 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
34161197 ATATCC--GCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
34161218 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 13 0.10
39 37 0.28
40 79 0.60
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:34161170 original size:79 final size:80
Alignment explanation
Indices: 34161038--34161217 Score: 278
Period size: 79 Copynumber: 2.3 Consensus size: 80
34161028 TATTCGAATG
*
34161038 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
34161103 TTTGTGCTAG-TGACT
66 TTTGTACGAGTTG-CT
*
34161118 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
34161182 TTTGTACGAGTTGCT
66 TTTGTACGAGTTGCT
*
34161197 ATATCC--GCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
34161218 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
77 14 0.15
79 53 0.56
80 27 0.29
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTACGAGTTGCT
Found at i:34163086 original size:25 final size:25
Alignment explanation
Indices: 34163058--34163127 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
34163048 CTCTTTTAAT
*
34163058 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
34163083 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
34163108 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
34163128 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:34163362 original size:27 final size:27
Alignment explanation
Indices: 34163332--34163436 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
34163322 GGCAAAATGA
* * *
34163332 TAATTTTACCCCACATGGGTATCTT-GG
1 TAATTCTACCCTACAAGGGTAT-TTCGG
34163359 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
34163386 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
34163413 TAATTCTACCTTACAGGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
34163437 TAGTATTTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
26 2 0.03
27 68 0.97
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:34163523 original size:54 final size:54
Alignment explanation
Indices: 34163426--34163606 Score: 242
Period size: 53 Copynumber: 3.4 Consensus size: 54
34163416 TTCTACCTTA
*
34163426 CAGGGGTATTTTAGT-ATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* *
34163479 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* ** **
34163533 CAGGGGTA-TTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTAGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAAC
* *
34163586 TAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTAGTAATTTT
34163607 GTAAATCGAG
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 57 0.51
54 54 0.48
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
CAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:34163566 original size:80 final size:81
Alignment explanation
Indices: 34163426--34163606 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 81
34163416 TTCTACCTTA
**
34163426 CAGGGGTATTTTAGT-ATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
34163490 TAGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
** *
34163506 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTA-TTTGGTAATTTTACTGATC-GAGGGTATT
1 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATT
* **
34163569 TTGGTAATTTTGTAAAC
65 TTAGTAATTTTACAAAC
* *
34163586 TAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTAGTAATTTT
34163607 GTAAATCGAG
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 71 0.80
81 17 0.19
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
TAGTAATTTTACAAAC
Found at i:34163620 original size:27 final size:27
Alignment explanation
Indices: 34163426--34163606 Score: 224
Period size: 27 Copynumber: 6.8 Consensus size: 27
34163416 TTCTACCTTA
*
34163426 CAGGGGTATTTTAGT-ATTTTACAAAT
1 CAGGGGTATTTTAGTAATTTTACAAAC
* *
34163452 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAAC
34163479 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAAC
34163506 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAAC
* ** *
34163533 CAGGGGTA-TTTGGTAATTTTACTGAT
1 CAGGGGTATTTTAGTAATTTTACAAAC
* **
34163559 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTAGTAATTTTACAAAC
* *
34163586 TAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTAGTAATTTT
34163607 GTAAATCGAG
Statistics
Matches: 134, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.01
26 33 0.25
27 100 0.75
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTAGTAATTTTACAAAC
Found at i:34163628 original size:80 final size:80
Alignment explanation
Indices: 34163429--34163630 Score: 185
Period size: 80 Copynumber: 2.5 Consensus size: 80
34163419 TACCTTACAG
** *** * * *
34163429 GGGTATTTTAGT-ATTTTACAAATTAGGGGTATTTTGGTAATTTTAC-AAACCAGGGGTATTTTA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTA-AACGGTAATTTTACTGATCGA-GGGTATTTTA
*
34163492 GTAATTTTACAAACCAG
64 GTAATTTTACAAACCAA
*** *
34163509 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTGGTAATTTTACTGATCGAGGGTATTTTGGT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTAAACGGTAATTTTACTGATCGAGGGTATTTTAGT
** *
34163574 AATTTTGTAAACTAA
66 AATTTTACAAACCAA
** *
34163589 GGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAACGGTAATT
1 GGGTATTTTAGTAATTTTACAAACCAG-GGGTAAACGGTAATT
34163631 CTATAAATTG
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 82 0.80
81 20 0.19
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.40
Consensus pattern (80 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTAAACGGTAATTTTACTGATCGAGGGTATTTTAGT
AATTTTACAAACCAA
Found at i:34166923 original size:48 final size:48
Alignment explanation
Indices: 34166846--34167164 Score: 347
Period size: 48 Copynumber: 6.7 Consensus size: 48
34166836 GAGATAAAGT
* * * * *
34166846 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGACC
1 CCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGA-G
* * * * *
34166895 CCA-TATAAGACCAAATCTGGGATATGGCATCAGTGTTGATATGTGAG
1 CCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAG
* *
34166942 CCAGTGTAAGACCATATTTGGGATATGGCATCGGCGTTGATATGTGAG
1 CCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAG
* * *
34166990 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGAAATGTGAG
1 CCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAG
* * * * *
34167038 CCAGAGTAAGACCATGTCTGGGACATGGCATCGGTGTGGATGTGTGAG
1 CCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAG
* * * *
34167086 CCAGTGTAAGACCATGTC-AGTACATGGCATCGGCGCTT-ATATGTGTG
1 CCAGTGTAAGACCATATCTGGGACATGGCATCGGCG-TTGATATGTGAG
* * **
34167133 CTAGTGTAAGACCATCTCTGGGATTTGGCATC
1 CCAGTGTAAGACCATATCTGGGACATGGCATC
34167165 AACATGTGGA
Statistics
Matches: 230, Mismatches: 37, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
47 40 0.17
48 187 0.81
49 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
CCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAG
Found at i:34169834 original size:30 final size:30
Alignment explanation
Indices: 34169791--34169858 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
34169781 CACACGGCCT
* * *
34169791 GACACATGGGCGTGTCCCTTGCCCGTGTGA
1 GACACACGAGCGTGTCCCTTGCCCATGTGA
*
34169821 GACACACGAGCGTGTCCCTTGGCCATGTGA
1 GACACACGAGCGTGTCCCTTGCCCATGTGA
34169851 GACACACG
1 GACACACG
34169859 GCCTGGACAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (30 bp):
GACACACGAGCGTGTCCCTTGCCCATGTGA
Found at i:34177131 original size:47 final size:48
Alignment explanation
Indices: 34177062--34177325 Score: 194
Period size: 47 Copynumber: 5.6 Consensus size: 48
34177052 GTGCCAATGC
* * *
34177062 CATGTCCTAGACATGGTTTTACACTGGCTCAT-ATCTC-AAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCGATG
* * *
34177108 CCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCGATG
* * * *
34177156 CATGTCCCAGAGAT-GTCGTACACTGGCTTATGC--CTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCTCGAAGCCGATG
* * * *
34177202 CATGTCCCAGACAT-GACTTACACTAGC-CCTCGTCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA-GCCGATG
* * * * *
34177248 TCATGTCTCGGACATGGTCTTACATTTGCTC-TCATACT--ATGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCGA-AGCCGATG
* *
34177296 CATGTCCCAGACAT-GTCTTATACTAGCTCA
1 CATGTCCCAGACATGGTCTTACACTGGCTCA
34177326 CACAAGTGAC
Statistics
Matches: 173, Mismatches: 31, Indels: 26
0.75 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 69 0.40
47 70 0.40
48 28 0.16
49 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCGATG
Found at i:34177224 original size:46 final size:45
Alignment explanation
Indices: 34177103--34177225 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 45
34177093 TATCTCAAGT
34177103 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCA-CTCGTAGC
* * * *
34177151 TGATGCATGTCCCAGAGATGTCGTACACTGGCTTATGC-CTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGAC-TAT-CACTCGTA-GC
*
34177197 CGATGCATGTCCCAGACATGACTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
34177226 AGCCCTCGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.02
46 42 0.66
47 16 0.25
48 5 0.08
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTATCACTCGTAGC
Found at i:34182791 original size:100 final size:100
Alignment explanation
Indices: 34182616--34182796 Score: 310
Period size: 100 Copynumber: 1.8 Consensus size: 100
34182606 TATTGTGAGG
* *
34182616 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCACATGTGTAGTACT
34182681 AAGTGAAGGCTACTATACGTACCCGAAAACTGTGA
66 AAGTGAAGGCTACTATACGTACCCGAAAACTGTGA
* *
34182716 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCACATGTGTAGTACT
34182781 AAGT-ACAGGCTACTAT
66 AAGTGA-AGGCTACTAT
34182797 GCATACCAGA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
99 1 0.01
100 75 0.99
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCACATGTGTAGTACT
AAGTGAAGGCTACTATACGTACCCGAAAACTGTGA
Found at i:34182804 original size:49 final size:49
Alignment explanation
Indices: 34182614--34182808 Score: 203
Period size: 49 Copynumber: 3.9 Consensus size: 49
34182604 ACTATTGTGA
* * * *
34182614 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTACAGGCTACTACGCGTACCAGATAATT
* * ** * *
34182663 AGTCGCATGTGTAGTACTAAGTGA-AGGCTACTATACGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGT-ACAGGCTACTACGCGTACCAGATAA-T-T
* * * * *
34182714 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTACAGGCTACTACGCGTACCAGATAATT
* *
34182763 GGTCACATGTGTAGTACTAAGTACAGGCTACTATGCATACCAGATA
1 GGTCACATGTGTAGTACTAAGTACAGGCTACTACGCGTACCAGATA
34182809 GCTTCGGCTA
Statistics
Matches: 115, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
49 77 0.67
50 2 0.02
51 36 0.31
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTACAGGCTACTACGCGTACCAGATAATT
Found at i:34187716 original size:47 final size:46
Alignment explanation
Indices: 34187647--34187904 Score: 177
Period size: 47 Copynumber: 5.5 Consensus size: 46
34187637 GTGCCAATGT
* * *
34187647 CATGTCCCAGACATGTTCTTACAGTGGTTCAT-ATCTCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGTT-ATCATCTCAAGCCGATG
** **
34187693 CCATGTCCCAGACATGGTCTTACACTGACTATCATCTTGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGTTATCATC-TCAAGCCGATG
** *
34187741 CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGCCTCGAGCCCGATG
1 CATGTCCCAGACATGGTCTTACACTGG-TTATCATCTCAAG-CCGATG
* ** * *
34187787 CATGTCCCTA-ACAT-GTCTTACACTAGTCCTCGTCTCAATGTCGATG
1 CATGTCCC-AGACATGGTCTTACACTGGTTATCATCTCAA-GCCGATG
* * * * *** *
34187833 CCATGTCCCAGGCATGGTCTTACACTGGCTCTCATAATTTGGCCAATG
1 -CATGTCCCAGACATGGTCTTACACTGGTTATCAT-CTCAAGCCGATG
*
34187881 CATGTCCCACACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
34187905 AGCACACACA
Statistics
Matches: 168, Mismatches: 32, Indels: 23
0.75 0.14 0.10
Matches are distributed among these distances:
45 4 0.02
46 66 0.39
47 69 0.41
48 28 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGTTATCATCTCAAGCCGATG
Found at i:34187785 original size:46 final size:47
Alignment explanation
Indices: 34187647--34187862 Score: 178
Period size: 47 Copynumber: 4.6 Consensus size: 47
34187637 GTGCCAATGT
* * ** * *
34187647 CATGTCCCAGACATGTTCTTACAGTGG-TTCATATCTCAAGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTT-ACGTCTCGAGCCGATGC
* * *
34187694 CATGTCCCAGACATGGTCTTACACTGAC-TATCATCTTGTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTCG-AGCCGATGC
*
34187741 CATGTCCCAGACAT-GTCTTACACTGGCTTACGCCTCGAGCCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAG-CCGATGC
* * * *
34187787 CATGTCCCTA-ACAT-GTCTTACACTAGTCCT-CGTCTCAATGTCGATGC
1 CATGTCCC-AGACATGGTCTTACACT-GGCTTACGTCTCGA-GCCGATGC
*
34187834 CATGTCCCAGGCATGGTCTTACACTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
34187863 CTCATAATTT
Statistics
Matches: 139, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.01
46 57 0.41
47 63 0.45
48 17 0.12
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGCCGATGC
Found at i:34188815 original size:43 final size:41
Alignment explanation
Indices: 34188768--34188864 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
34188758 GACAATGACT
** *
34188768 TTTAGTGGCGTTTGCGTTAAAAGCGCCACTAAAAGTCATGGTC
1 TTTAGTGGCGTTT-C-CAAAAAACGCCACTAAAAGTCATGGTC
* *
34188811 TTTAGCT-GCGCTTTCCAAAAAACGCCGCTAAAATTCATGGTC
1 TTTAG-TGGCG-TTTCCAAAAAACGCCACTAAAAGTCATGGTC
34188853 TTTAGTGGCGTT
1 TTTAGTGGCGTT
34188865 CTTCCAGCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
41 3 0.07
42 30 0.65
43 9 0.20
44 4 0.09
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (41 bp):
TTTAGTGGCGTTTCCAAAAAACGCCACTAAAAGTCATGGTC
Found at i:34188843 original size:42 final size:43
Alignment explanation
Indices: 34188786--34188885 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
34188776 CGTTTGCGTT
* *
34188786 AAAAGCGCCACTAAAAGTCATGGTCTTTAGCT-GCGCT-TTCCA
1 AAAAACGCCGCTAAAAGTCATGGTCTTTAG-TGGCGCTCTTCCA
* *
34188828 AAAAACGCCGCTAAAATTCATGGTCTTTAGTGGCGTTCTTCCA
1 AAAAACGCCGCTAAAAGTCATGGTCTTTAGTGGCGCTCTTCCA
**
34188871 GCAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
34188886 GACCATGACC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.02
42 31 0.62
43 18 0.36
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
AAAAACGCCGCTAAAAGTCATGGTCTTTAGTGGCGCTCTTCCA
Found at i:34192940 original size:17 final size:15
Alignment explanation
Indices: 34192910--34192943 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
34192900 GATATTTACA
34192910 AAATAACAAATAAAT
1 AAATAACAAATAAAT
34192925 AAATAAACAGAATAAAT
1 AAAT-AACA-AATAAAT
34192942 AA
1 AA
34192944 CAAAAGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.18
Consensus pattern (15 bp):
AAATAACAAATAAAT
Found at i:34194961 original size:8 final size:7
Alignment explanation
Indices: 34194950--34195005 Score: 85
Period size: 7 Copynumber: 7.6 Consensus size: 7
34194940 AATATTAAAA
34194950 TTTTAAGT
1 TTTTAA-T
34194958 TTTTAAGT
1 TTTTAA-T
34194966 TTTTAAT
1 TTTTAAT
34194973 TTTTAAT
1 TTTTAAT
34194980 TTTTAAT
1 TTTTAAT
34194987 TTTTAAT
1 TTTTAAT
34194994 TTTTCAAT
1 TTTT-AAT
34195002 TTTT
1 TTTT
34195006 TTGAAGATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
7 26 0.55
8 21 0.45
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (7 bp):
TTTTAAT
Found at i:34195623 original size:14 final size:14
Alignment explanation
Indices: 34195596--34195646 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
34195586 TTAGAGGTTA
* *
34195596 GTTTTCAGGCTTGG
1 GTTTTAAGGGTTGG
34195610 GTTTTAAGGGTTGG
1 GTTTTAAGGGTTGG
*
34195624 GGTTT-AGTGGTTGG
1 GTTTTAAG-GGTTGG
34195638 AGTTTTAAG
1 -GTTTTAAG
34195647 AGTTTATGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 2 0.07
14 22 0.73
15 4 0.13
16 2 0.07
ACGTcount: A:0.14, C:0.04, G:0.39, T:0.43
Consensus pattern (14 bp):
GTTTTAAGGGTTGG
Found at i:34196341 original size:41 final size:41
Alignment explanation
Indices: 34196245--34196597 Score: 442
Period size: 41 Copynumber: 8.7 Consensus size: 41
34196235 AAACTGAGTA
* * * * *
34196245 ATAGCGGCGTTTTTCCAGAAGTGCCGCTAAAAACT-GAGCA
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
* * *
34196285 ATAGTGGTGTTTTTCCAAAAGCGCAGCTAAAACCTCGATCT
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
* * *
34196326 ATAGTGGCGTTTTTCCAAAAGTGCTGCTAAAACCTCGATCT
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
**
34196367 ATAGCGGTTTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
* * * * *
34196408 ATAGCGGCGTTTTTTCAAAAGCACCGCTAAAATCT-GAGCA
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
* * *
34196448 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAAACT-GAGCA
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
* *
34196488 ATAGCGGTGTTTTTCCAAAAGTGCCGCTAAAACCTCGATCT
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
*
34196529 ATAGCGCCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
** *
34196570 ATAGTAGCGTTTTTCCAAAAGCTCCGCT
1 ATAGCGGCGTTTTTCCAAAAGCGCCGCT
34196598 GTTGCTCAGT
Statistics
Matches: 273, Mismatches: 38, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
40 101 0.37
41 172 0.63
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
ATAGCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCT
Found at i:34196644 original size:41 final size:41
Alignment explanation
Indices: 34196599--34196698 Score: 119
Period size: 41 Copynumber: 2.4 Consensus size: 41
34196589 AGCTCCGCTG
* * *
34196599 TTGCTCAGTTTTTCGCGGCATTTGGACAAAAAATGCCACTA
1 TTGCTTAGTTTTTAGCGGCATTTGGACAAAAAACGCCACTA
* * * * *
34196640 TTGCTTAATTTTTAACGGCGTTTGGACCAAAAACGCCGCTA
1 TTGCTTAGTTTTTAGCGGCATTTGGACAAAAAACGCCACTA
*
34196681 TTGCTTAGTTTTTTGCGG
1 TTGCTTAGTTTTTAGCGG
34196699 TGTTTTCATA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (41 bp):
TTGCTTAGTTTTTAGCGGCATTTGGACAAAAAACGCCACTA
Found at i:34207663 original size:13 final size:12
Alignment explanation
Indices: 34207643--34207674 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
34207633 TACCTTGCTC
34207643 TTTTTTTTCTTT
1 TTTTTTTTCTTT
34207655 TTCTTTTTTCTTT
1 TT-TTTTTTCTTT
34207668 TTTTTTT
1 TTTTTTT
34207675 GCACATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:34209169 original size:17 final size:18
Alignment explanation
Indices: 34209147--34209180 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34209137 GATAAGTTTT
*
34209147 TATTGTACA-AAAAACTA
1 TATTGTAAATAAAAACTA
34209164 TATTGTAAATAAAAACT
1 TATTGTAAATAAAAACT
34209181 TTTAATGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (18 bp):
TATTGTAAATAAAAACTA
Found at i:34211353 original size:2 final size:2
Alignment explanation
Indices: 34211346--34211373 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
34211336 TTAAAATAGT
34211346 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34211374 AAGAGACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34215383 original size:13 final size:13
Alignment explanation
Indices: 34215365--34215391 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34215355 ATCATTTTCC
34215365 ACCATTTGGGAGG
1 ACCATTTGGGAGG
34215378 ACCATTTGGGAGG
1 ACCATTTGGGAGG
34215391 A
1 A
34215392 AACAGGTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.22
Consensus pattern (13 bp):
ACCATTTGGGAGG
Found at i:34215502 original size:22 final size:25
Alignment explanation
Indices: 34215466--34215516 Score: 81
Period size: 22 Copynumber: 2.2 Consensus size: 25
34215456 AAATATTTTT
34215466 TTAAGATTCATTTCTTTTTTAT-TA
1 TTAAGATTCATTTCTTTTTTATATA
34215490 TTAAG-TT-ATTTCTTTTTTATATA
1 TTAAGATTCATTTCTTTTTTATATA
34215513 TTAA
1 TTAA
34215517 ATATGTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.50
23 8 0.31
24 5 0.19
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (25 bp):
TTAAGATTCATTTCTTTTTTATATA
Found at i:34221153 original size:7 final size:7
Alignment explanation
Indices: 34221133--34221166 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
34221123 TATTAAATTA
34221133 TTTCTTT
1 TTTCTTT
*
34221140 TCT-TTT
1 TTTCTTT
34221146 TTTCTTT
1 TTTCTTT
34221153 TTTCTTT
1 TTTCTTT
34221160 TTTCTTT
1 TTTCTTT
34221167 CTCCTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTCTTT
Found at i:34223676 original size:41 final size:41
Alignment explanation
Indices: 34223610--34223737 Score: 127
Period size: 41 Copynumber: 3.1 Consensus size: 41
34223600 GTACAAGTTA
* * * * *
34223610 CCTGATACAATACACTGGCACGAAGCTTGCTAGGCTCAAGG
1 CCTGATACAATACACCGACACGAAGCTGGCTAGGCACAAAG
* *
34223651 CCTGATACAATACACCGACATGAAGCTGGTTAGGCACAAAG
1 CCTGATACAATACACCGACACGAAGCTGGCTAGGCACAAAG
* *
34223692 CCTGA-ATCAATACACC-AGCACAAAGCAT-GCTAGGCATAAAG
1 CCTGATA-CAATACACCGA-CACGAAGC-TGGCTAGGCACAAAG
34223733 CCTGA
1 CCTGA
34223738 ATCGCTATCC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 2 0.03
41 70 0.96
42 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (41 bp):
CCTGATACAATACACCGACACGAAGCTGGCTAGGCACAAAG
Found at i:34227371 original size:40 final size:40
Alignment explanation
Indices: 34227288--34227440 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
34227278 TCGAATGATG
* *
34227288 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
34227328 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
34227368 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
34227409 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
34227441 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:34235438 original size:40 final size:39
Alignment explanation
Indices: 34235304--34235454 Score: 139
Period size: 39 Copynumber: 3.8 Consensus size: 39
34235294 TCGAATGATG
* ** *
34235304 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTCCAAA
*
34235343 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTCCAAA
* *
34235382 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTAT-TATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T-TCCA-AA
* * *
34235423 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
34235455 CGCTATATCC
Statistics
Matches: 94, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 53 0.56
40 37 0.39
41 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCAAA
Found at i:34236943 original size:2 final size:2
Alignment explanation
Indices: 34236931--34236975 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
34236921 TTTTGGTTTG
*
34236931 TA TA T- TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34236972 TA TA
1 TA TA
34236976 CGTCAATGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:34244768 original size:23 final size:24
Alignment explanation
Indices: 34244718--34244843 Score: 87
Period size: 24 Copynumber: 5.2 Consensus size: 24
34244708 CTTATAACGA
* *
34244718 GAAGCTCACATAGAGCCATTTCGG
1 GAAGCTCACAAAGAGCCATATCGG
*
34244742 GAAGCTCATAAAGAGCC-TATCGG
1 GAAGCTCACAAAGAGCCATATCGG
* *** * * *
34244765 GAAGCTTA-TTCGGGCTATATAACAG
1 GAAGCTCACAAAGAGCCATAT--CGG
*
34244790 GAAGCTCA-TAAGAGCCATAATCGG
1 GAAGCTCACAAAGAGCCAT-ATCGG
* *
34244814 GAAGTTCACAAAGAACCATATCGG
1 GAAGCTCACAAAGAGCCATATCGG
34244838 GAAGCT
1 GAAGCT
34244844 TCTGATAGCC
Statistics
Matches: 77, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
22 3 0.04
23 15 0.19
24 34 0.44
25 23 0.30
26 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCGG
Found at i:34244827 original size:72 final size:73
Alignment explanation
Indices: 34244710--34244844 Score: 186
Period size: 72 Copynumber: 1.9 Consensus size: 73
34244700 ACTCGAGCCT
* * *
34244710 TATAACGAGAAGCTCACATAGAGCCATTTCGGGAAGCTCATAAAGAGCC-TATCGGGAAGCTTAT
1 TATAACGAGAAGCTCACATAGAGCCATATCGGGAAGCTCACAAAGAACCATATCGGGAAGCTTAT
34244774 TCGGGCTA
66 TCGGGCTA
* *
34244782 TATAAC-AGGAAGCTCATA-AGAGCCATAATCGGGAAGTTCACAAAGAACCATATCGGGAAGCTT
1 TATAACGA-GAAGCTCACATAGAGCCAT-ATCGGGAAGCTCACAAAGAACCATATCGGGAAGCTT
34244845 CTGATAGCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
71 9 0.16
72 33 0.60
73 13 0.24
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.21
Consensus pattern (73 bp):
TATAACGAGAAGCTCACATAGAGCCATATCGGGAAGCTCACAAAGAACCATATCGGGAAGCTTAT
TCGGGCTA
Found at i:34244836 original size:24 final size:24
Alignment explanation
Indices: 34244799--34244928 Score: 72
Period size: 24 Copynumber: 5.3 Consensus size: 24
34244789 GGAAGCTCAT
*
34244799 AAGAGCCATAATCGGGAAGTTCACA
1 AAGAACCAT-ATCGGGAAGTTCACA
**
34244824 AAGAACCATATCGGGAAGCTTCTGA
1 AAGAACCATATCGGGAAG-TTCACA
*
34244849 TAG--CCAATATCGGGAAGTTCA-A
1 AAGAACC-ATATCGGGAAGTTCACA
** *
34244871 CCG-AGCACTATCGGGAAGCTT-ACA
1 AAGAACCA-TATCGGGAAG-TTCACA
* *
34244895 ATGAACCAATTTAACGGGAAGTTCACA
1 AAGAACC-A--TATCGGGAAGTTCACA
34244922 AAGAACC
1 AAGAACC
34244929 TTTAATTGGG
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
22 3 0.04
23 17 0.21
24 24 0.30
25 16 0.20
26 3 0.04
27 18 0.22
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (24 bp):
AAGAACCATATCGGGAAGTTCACA
Found at i:34244841 original size:48 final size:48
Alignment explanation
Indices: 34244789--34244952 Score: 113
Period size: 48 Copynumber: 3.3 Consensus size: 48
34244779 CTATATAACA
34244789 GGAAGCTCATAAGAGCCATAATCGGGAAGTTCACAAAGAACCATATCG
1 GGAAGCTCATAAGAGCCATAATCGGGAAGTTCACAAAGAACCATATCG
* * ** *
34244837 GGAAGCTTC-TGATAGCCA-ATATCGGGAAGTTCA-ACCG-AGCACTATCG
1 GGAAGC-TCATAAGAGCCATA-ATCGGGAAGTTCACAAAGAACCA-TATCG
* * * * *
34244884 GGAAGCTTACAATGAACCAATTTAA-CGGGAAGTTCACAAAGAACCTTTAATTG
1 GGAAGCTCATAA-GAGCC-A--TAATCGGGAAGTTCACAAAGAACC-AT-ATCG
*
34244937 GGATGCTCATAAGAGC
1 GGAAGCTCATAAGAGC
34244953 TAAGGTGTGT
Statistics
Matches: 84, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
46 4 0.05
47 15 0.18
48 29 0.35
49 3 0.04
50 11 0.13
51 3 0.04
52 7 0.08
53 12 0.14
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (48 bp):
GGAAGCTCATAAGAGCCATAATCGGGAAGTTCACAAAGAACCATATCG
Found at i:34252555 original size:45 final size:45
Alignment explanation
Indices: 34252491--34252581 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
34252481 CCAAAACATG
* *
34252491 TGTCACATATATCACGAACTCAGACCATAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGA
*
34252536 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGA
34252581 T
1 T
34252582 TACATAATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGA
Found at i:34262993 original size:47 final size:48
Alignment explanation
Indices: 34262903--34263027 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 48
34262893 GGGTAAGGTA
* * **
34262903 TCGATGCCGTGTCCTAGACGTGGTCTTACACTGGTTTATATCTC-AAG
1 TCGATGCCATGTCCTAGACATGGTCTTACACTGGACTATATCTCGAAG
* * *
34262950 TCGAAGCCATGTCCTAGATATGGTCTTACACT-GACTATCATCTCGTAG
1 TCGATGCCATGTCCTAGACATGGTCTTACACTGGACTAT-ATCTCGAAG
* *
34262998 TTGATG-CATGTCCCAGACAT-GTCTTACACT
1 TCGATGCCATGTCCTAGACATGGTCTTACACT
34263028 AGCACTCGTC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 14 0.22
47 45 0.69
48 6 0.09
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (48 bp):
TCGATGCCATGTCCTAGACATGGTCTTACACTGGACTATATCTCGAAG
Found at i:34264468 original size:46 final size:48
Alignment explanation
Indices: 34264401--34264521 Score: 167
Period size: 46 Copynumber: 2.6 Consensus size: 48
34264391 TCTGCGTGCT
*
34264401 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGTT-TGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATAT-TTAAGCC
* *
34264447 AGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATATTTAAGCC
* *
34264495 AGTGTAAGACATGTCTAGGACAGGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
34264522 TTTCATTGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 32 0.48
47 3 0.05
48 31 0.47
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATATTTAAGCC
Found at i:34266614 original size:23 final size:23
Alignment explanation
Indices: 34266587--34266633 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
34266577 AAATAATGGT
34266587 AGAAATAGCTAGAACGGTTGATG
1 AGAAATAGCTAGAACGGTTGATG
*
34266610 AGAAATAGCTAGATCGGTTGATG
1 AGAAATAGCTAGAACGGTTGATG
34266633 A
1 A
34266634 CAACTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.30, T:0.23
Consensus pattern (23 bp):
AGAAATAGCTAGAACGGTTGATG
Found at i:34270339 original size:2 final size:2
Alignment explanation
Indices: 34270332--34270356 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
34270322 CTATTGCGTG
34270332 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
34270357 GTTTGCACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34271311 original size:40 final size:40
Alignment explanation
Indices: 34271109--34271316 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
34271099 TGAATGATAC
* * *
34271109 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
34271149 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
34271189 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
34271229 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
34271269 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
34271309 CC-GGCTAA
1 CCGGGCTAA
34271317 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:34279413 original size:40 final size:40
Alignment explanation
Indices: 34279211--34279418 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
34279201 TGAATGATAC
* * *
34279211 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
34279251 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
34279291 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
34279331 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
34279371 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
34279411 CC-GGCTAA
1 CCGGGCTAA
34279419 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:34279696 original size:97 final size:97
Alignment explanation
Indices: 34279530--34279708 Score: 349
Period size: 97 Copynumber: 1.8 Consensus size: 97
34279520 TCGGAAAAGT
*
34279530 CGATTCGTTTGAAATAGTGTTCGTTCGATCGACTAACGAACTTTCGGCTCTTAGATAGGTTGATA
1 CGATTCGTTTGAAATAGTGTTCGTTCAATCGACTAACGAACTTTCGGCTCTTAGATAGGTTGATA
34279595 CCTTGTGTGTGTATATGATTATGAGAATGTGC
66 CCTTGTGTGTGTATATGATTATGAGAATGTGC
34279627 CGATTCGTTTGAAATAGTGTTCGTTCAATCGACTAACGAACTTTCGGCTCTTAGATAGGTTGATA
1 CGATTCGTTTGAAATAGTGTTCGTTCAATCGACTAACGAACTTTCGGCTCTTAGATAGGTTGATA
34279692 CCTTGTGTGTGTATATG
66 CCTTGTGTGTGTATATG
34279709 TTGATGAAGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 81 1.00
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (97 bp):
CGATTCGTTTGAAATAGTGTTCGTTCAATCGACTAACGAACTTTCGGCTCTTAGATAGGTTGATA
CCTTGTGTGTGTATATGATTATGAGAATGTGC
Found at i:34286026 original size:40 final size:40
Alignment explanation
Indices: 34285939--34286188 Score: 382
Period size: 40 Copynumber: 6.3 Consensus size: 40
34285929 GCTACTCGTT
* *
34285939 CAAATGCCTTCGGGACATAGCCCGG-TTATAG-AACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
34285978 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
34286018 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
34286057 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
34286097 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
34286137 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
34286176 CAAATGCCTTCGG
1 CAAATGCCTTCGG
34286189 ATCTTAGTCT
Statistics
Matches: 194, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
39 96 0.49
40 98 0.51
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:34286053 original size:79 final size:80
Alignment explanation
Indices: 34285939--34286188 Score: 391
Period size: 79 Copynumber: 3.2 Consensus size: 80
34285929 GCTACTCGTT
*
34285939 CAAATGCCTTCGGGACATAGCCCGG-TTATAG-AACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
34286002 GATTTAGTGACTCGCA
65 GATTTAGTAACTCGCA
* *
34286018 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
34286082 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* * *
34286097 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
34286161 AATTAGTAACTCGCA
66 ATTTAGTAACTCGCA
34286176 CAAATGCCTTCGG
1 CAAATGCCTTCGG
34286189 ATCTTAGTCT
Statistics
Matches: 158, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
78 12 0.08
79 110 0.70
80 36 0.23
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:34286126 original size:119 final size:118
Alignment explanation
Indices: 34285939--34286188 Score: 448
Period size: 119 Copynumber: 2.1 Consensus size: 118
34285929 GCTACTCGTT
*
34285939 CAAATGCCTTCGGGACATAGCCCGGTTATAGAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGTTATAGAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
34286004 TTTAGTGACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
66 TTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
34286057 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACATAACCCGG-TTATAG-AACTCGCACAAATGCCTTCGGGACTTAACCCG
34286121 GATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
64 GATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
34286176 CAAATGCCTTCGG
1 CAAATGCCTTCGG
34286189 ATCTTAGTCT
Statistics
Matches: 127, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
118 26 0.20
119 101 0.80
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:34288662 original size:15 final size:15
Alignment explanation
Indices: 34288644--34288707 Score: 85
Period size: 15 Copynumber: 4.3 Consensus size: 15
34288634 GACAAGAAGA
*
34288644 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
34288659 CCAAGATAGAA-AAAT
1 CCAAGATA-AAGAAAT
*
34288674 CCAAGATGAAGAAAT
1 CCAAGATAAAGAAAT
*
34288689 CCAAGATACAGAAAT
1 CCAAGATAAAGAAAT
34288704 CCAA
1 CCAA
34288708 TATATGATAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.05
15 39 0.91
16 2 0.05
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:34292083 original size:40 final size:40
Alignment explanation
Indices: 34292002--34292257 Score: 412
Period size: 40 Copynumber: 6.5 Consensus size: 40
34291992 CAACCAAGTA
* * *
34292002 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
34292041 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34292081 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34292120 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34292160 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34292199 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34292239 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34292258 TTATCATCCG
Statistics
Matches: 202, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 89 0.44
40 113 0.56
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34292147 original size:79 final size:80
Alignment explanation
Indices: 34292002--34292257 Score: 421
Period size: 79 Copynumber: 3.2 Consensus size: 80
34291992 CAACCAAGTA
* * *
34292002 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
34292065 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
34292081 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
34292145 TAACTCACACAAATG
66 TAACTCGCACAAATG
* *
34292160 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
34292224 TAACTCGCACAAATG
66 TAACTCGCACAAATG
34292239 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34292258 TTATCATCCG
Statistics
Matches: 167, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
78 9 0.05
79 144 0.86
80 14 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:34296943 original size:54 final size:54
Alignment explanation
Indices: 34296871--34296979 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
34296861 TTCTTTTCTA
34296871 ACTCTTTGTCATCAAGTACATACGCAAGGTATGCTTCACACCCCTTTCTTACAT
1 ACTCTTTGTCATCAAGTACATACGCAAGGTATGCTTCACACCCCTTTCTTACAT
34296925 ACTCTTTGTCATCAAGTACATACGCAAGGTATGCTTCACACCCCTTTCTTACAT
1 ACTCTTTGTCATCAAGTACATACGCAAGGTATGCTTCACACCCCTTTCTTACAT
34296979 A
1 A
34296980 TTTCTAGCCA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (54 bp):
ACTCTTTGTCATCAAGTACATACGCAAGGTATGCTTCACACCCCTTTCTTACAT
Found at i:34300247 original size:39 final size:40
Alignment explanation
Indices: 34300160--34300413 Score: 378
Period size: 39 Copynumber: 6.5 Consensus size: 40
34300150 CAACCAAGTA
* * *
34300160 CCTTC-GGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
34300198 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34300238 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34300277 CCTTCGGGACTTAGCCCGGTTATAGTAACTCG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34300316 CCTTCGGGACTTAGCCCGGATATAGTAACTCG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34300355 CCTTCAGGACTTAGCCCGGA-ATTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
34300395 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34300414 TTATCATCCG
Statistics
Matches: 200, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
38 6 0.03
39 119 0.60
40 75 0.38
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34300290 original size:79 final size:80
Alignment explanation
Indices: 34300160--34300413 Score: 387
Period size: 79 Copynumber: 3.2 Consensus size: 80
34300150 CAACCAAGTA
* * *
34300160 CCTTC-GGATTTAG-CCGGACATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
34300222 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
34300238 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
34300302 TAACTCG-ACAAATG
66 TAACTCGCACAAATG
* *
34300316 CCTTCGGGACTTAGCCCGGATATAGTAACTCG-ACAAATGCCTTCAGGACTTAGCCCGG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
*
34300379 GTAACTCACACAAATG
65 GTAACTCGCACAAATG
34300395 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34300414 TTATCATCCG
Statistics
Matches: 165, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
77 1 0.01
78 59 0.36
79 105 0.64
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:34300367 original size:118 final size:118
Alignment explanation
Indices: 34300192--34300417 Score: 402
Period size: 118 Copynumber: 1.9 Consensus size: 118
34300182 GCTACTCGCT
*
34300192 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
*
34300256 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGA
66 AT-TAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGA
34300310 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG-ACAAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGG
34300374 AATTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTAT
65 AATTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTAT
34300418 CATCCGAATA
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
117 12 0.12
118 90 0.87
119 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (118 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
ATTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGA
Found at i:34303940 original size:51 final size:51
Alignment explanation
Indices: 34303885--34303984 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
34303875 CTACCTTATA
* *
34303885 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTT
1 ACATG-AATCACATCCATAATGAACTCGGACCACTCAAAGAGCTCGGATGTT
** *
34303936 ACATGAATTGCATCCATTATGAACTCGGACCACTCAAAGAGCTCGGATG
1 ACATGAATCACATCCATAATGAACTCGGACCACTCAAAGAGCTCGGATG
34303985 CTCACATCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCGGACCACTCAAAGAGCTCGGATGTT
Found at i:34304852 original size:39 final size:39
Alignment explanation
Indices: 34304809--34304887 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
34304799 ACCATTAAAC
*
34304809 ATCAAAACACATGCATGTCATCGATGGGTAAATTTTTTA
1 ATCAAAACACATGCATGTCATCCATGGGTAAATTTTTTA
34304848 ATCAAAACACATGCATGTCATCCATGGGTAAATTTTTTA
1 ATCAAAACACATGCATGTCATCCATGGGTAAATTTTTTA
34304887 A
1 A
34304888 CACAAACTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (39 bp):
ATCAAAACACATGCATGTCATCCATGGGTAAATTTTTTA
Found at i:34309396 original size:27 final size:27
Alignment explanation
Indices: 34309366--34309423 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
34309356 ACAATCATAC
34309366 ATCACATAAGGGCAAAACAACCATTTT
1 ATCACATAAGGGCAAAACAACCATTTT
* * **
34309393 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATAAGGGCAAAACAACCATTTT
34309420 ATCA
1 ATCA
34309424 ATTAGAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.26
Consensus pattern (27 bp):
ATCACATAAGGGCAAAACAACCATTTT
Found at i:34312368 original size:19 final size:20
Alignment explanation
Indices: 34312334--34312373 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
34312324 TTATTGAAAT
*
34312334 ATGTATATTGTGAATGTTAA
1 ATGTAAATTGTGAATGTTAA
34312354 ATGTAAATT-TGAATGTTAA
1 ATGTAAATTGTGAATGTTAA
34312373 A
1 A
34312374 ATTGGGACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (20 bp):
ATGTAAATTGTGAATGTTAA
Found at i:34320857 original size:5 final size:5
Alignment explanation
Indices: 34320847--34320873 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
34320837 AATACCAACC
34320847 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
34320874 TTTATTTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:34322355 original size:27 final size:28
Alignment explanation
Indices: 34322325--34322394 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
34322315 ATAATAAGTC
*
34322325 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
34322352 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
34322380 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34322395 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:34326308 original size:16 final size:16
Alignment explanation
Indices: 34326287--34326320 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
34326277 TTCAAAGTTC
34326287 AACCAAAAGTGTACCA
1 AACCAAAAGTGTACCA
34326303 AACCAAAAGTGTACCA
1 AACCAAAAGTGTACCA
34326319 AA
1 AA
34326321 GGGGCTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.24, G:0.12, T:0.12
Consensus pattern (16 bp):
AACCAAAAGTGTACCA
Found at i:34326814 original size:40 final size:40
Alignment explanation
Indices: 34326729--34326986 Score: 328
Period size: 40 Copynumber: 6.5 Consensus size: 40
34326719 AAGCCAAGTA
* * *
34326729 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
34326767 CCTTCGGGACATAGCCCGGATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34326807 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34326847 CCTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
34326887 CCTTCGGGACTTAGCCCGGATGTAATAACTCACGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34326927 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34326968 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34326987 TTATCATCCA
Statistics
Matches: 193, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
38 12 0.06
39 16 0.08
40 140 0.73
41 24 0.12
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34335533 original size:21 final size:19
Alignment explanation
Indices: 34335497--34335546 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
34335487 TATTATATCC
*
34335497 AATATAAATTAATAATATTTA
1 AATATAAAATAAT-A-ATTTA
*
34335518 AATATAAAATATTAATTTA
1 AATATAAAATAATAATTTA
34335537 ATATATAAAA
1 A-ATATAAAA
34335547 CAAAATATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 6 0.23
20 9 0.35
21 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATATAAAATAATAATTTA
Found at i:34335976 original size:9 final size:9
Alignment explanation
Indices: 34335962--34336012 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
34335952 CACATCCTTT
34335962 TCTCAACTC
1 TCTCAACTC
*
34335971 TCTCAAACCC
1 TCTC-AACTC
*
34335981 TCTCAAGTC
1 TCTCAACTC
*
34335990 TCTCAACTT
1 TCTCAACTC
34335999 TCTCAACTC
1 TCTCAACTC
34336008 TCTCA
1 TCTCA
34336013 TTTTGATTGT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 27 0.77
10 8 0.23
ACGTcount: A:0.24, C:0.41, G:0.02, T:0.33
Consensus pattern (9 bp):
TCTCAACTC
Found at i:34340134 original size:24 final size:23
Alignment explanation
Indices: 34340107--34340182 Score: 84
Period size: 22 Copynumber: 3.3 Consensus size: 23
34340097 TGATAAACAA
34340107 TAAGCTCTATTGAGCTAGAAACGG
1 TAAGCTCTATTGAGCT-GAAACGG
*
34340131 TAAGCTCTATTAAGCTGAATA--G
1 TAAGCTCTATTGAGCTGAA-ACGG
* * *
34340153 CAAGCTCTTTTGAGCTGAATCGG
1 TAAGCTCTATTGAGCTGAAACGG
34340176 TAAGCTC
1 TAAGCTC
34340183 CAATAGGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
22 17 0.40
23 10 0.23
24 16 0.37
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACGG
Found at i:34340198 original size:46 final size:45
Alignment explanation
Indices: 34340108--34340228 Score: 134
Period size: 46 Copynumber: 2.6 Consensus size: 45
34340098 GATAAACAAT
* * * *
34340108 AAGCTCTATTGAGCTAGAAACGGTAAGCTCTATTAAGCTGAATAGC
1 AAGCTCTTTTGAGCT-GAATCGGTAAGCTCCAATAAGCTGAATAGC
* * *
34340154 AAGCTCTTTTGAGCTGAATCGGTAAGCTCCAATAGGTTGAAATAGT
1 AAGCTCTTTTGAGCTGAATCGGTAAGCTCCAATAAGCTG-AATAGC
** *
34340200 AAGCTCTTACGAGCTGAATCAGTAAGCTC
1 AAGCTCTTTTGAGCTGAATCGGTAAGCTC
34340229 ATACGAGCTG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 19 0.30
46 45 0.70
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (45 bp):
AAGCTCTTTTGAGCTGAATCGGTAAGCTCCAATAAGCTGAATAGC
Found at i:34340217 original size:23 final size:23
Alignment explanation
Indices: 34340164--34340238 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
34340154 AAGCTCTTTT
*
34340164 GAGCTGAATCGGTAAGCTCCAATA-
1 GAGCTGAATCAGTAAGCT-C-ATAC
* *
34340188 G-GTTGAAAT-AGTAAGCTCTTAC
1 GAGCTG-AATCAGTAAGCTCATAC
34340210 GAGCTGAATCAGTAAGCTCATAC
1 GAGCTGAATCAGTAAGCTCATAC
34340233 GAGCTG
1 GAGCTG
34340239 TGGTGAGTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 2 0.05
22 5 0.12
23 31 0.74
24 4 0.10
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (23 bp):
GAGCTGAATCAGTAAGCTCATAC
Found at i:34346997 original size:40 final size:41
Alignment explanation
Indices: 34346926--34347067 Score: 157
Period size: 40 Copynumber: 3.5 Consensus size: 41
34346916 CTCGAATGAT
* *
34346926 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCG-CTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACTAC
* * * *
34346966 ATCCGGACTAAGAT-CCGAAGGCATTAATGCT-AGTGACTAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAAGCGACTAC
* * *
34347006 ATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACTAC
*
34347046 ATCCGGGCTAAGACCCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC
34347068 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
39 4 0.04
40 84 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (41 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACTAC
Found at i:34355057 original size:40 final size:39
Alignment explanation
Indices: 34354934--34355111 Score: 184
Period size: 40 Copynumber: 4.6 Consensus size: 39
34354924 TACTCGAATG
* *
34354934 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTT-TGCT-AGTGACT
* *
34354975 ACATCCGGACTAAGAT-CCGAAGGCA-TTTGCTAGTGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTTGCTAGTGACT
*
34355013 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTT-TGCTAGTGACT
* * * * **
34355053 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGCTAGTGACT
*
34355092 ATATCC-GGCTAA-ACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
34355112 ATGCTTGATT
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
37 9 0.08
38 33 0.28
39 19 0.16
40 37 0.31
41 20 0.17
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTTGCTAGTGACT
Found at i:34355095 original size:79 final size:79
Alignment explanation
Indices: 34354934--34355111 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 79
34354924 TACTCGAATG
* * * *
34354934 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGC
*
34354999 ATTTGCTAGTGACT
66 ATTTGCGAGTGACT
* * *
34355013 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGC
* **
34355077 CTTGTGCGAGTGGTT
66 ATT-TGCGAGTGACT
*
34355092 ATATCC-GGCTAA-ACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
34355112 ATGCTTGATT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
77 7 0.08
78 34 0.40
79 45 0.52
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGC
ATTTGCGAGTGACT
Found at i:34358210 original size:12 final size:11
Alignment explanation
Indices: 34358191--34358221 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
34358181 TATATAAAAC
34358191 TTATTTTATTA
1 TTATTTTATTA
34358202 TTAATTTTATTA
1 TT-ATTTTATTA
34358214 TTATTTTA
1 TTATTTTA
34358222 AAGATATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:34362127 original size:46 final size:46
Alignment explanation
Indices: 34362077--34362252 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
34362067 TGTTTGGGCA
*
34362077 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
34362123 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
34362170 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
34362216 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34362253 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34362232 original size:93 final size:93
Alignment explanation
Indices: 34362073--34362244 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
34362063 AGGATGTTTG
* *
34362073 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
34362138 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
34362166 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
34362231 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
34362245 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:34365194 original size:15 final size:15
Alignment explanation
Indices: 34365174--34365242 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
34365164 GTATCTTGGG
34365174 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
34365189 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
34365204 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
34365219 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
34365234 TTTCTTTAT
1 TTTCTTTAT
34365243 TCGGTTTTTC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:34365243 original size:30 final size:30
Alignment explanation
Indices: 34365165--34365244 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
34365155 CATAGTATCG
* * *
34365165 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
34365195 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
34365225 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
34365245 GGTTTTTCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:34367665 original size:46 final size:46
Alignment explanation
Indices: 34367615--34367791 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
34367605 TGTTTGGGCA
*
34367615 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
34367661 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
34367708 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
34367754 -CCTGAGCTCGTTGAGTTGAGTCCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGT-CCGAGTTCACTTATGG
34367792 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 54 0.51
47 50 0.47
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34367770 original size:93 final size:94
Alignment explanation
Indices: 34367611--34367784 Score: 289
Period size: 93 Copynumber: 1.9 Consensus size: 94
34367601 AGGATGTTTG
*
34367611 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
34367676 TTGAGT-CCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCCGAGTTCGAGAGATGTAACTA
* * *
34367704 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGA
34367768 GTTGAGTCCCGAGTTCG
65 GTTGAGTCCCGAGTTCG
34367785 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
92 2 0.03
93 64 0.85
94 9 0.12
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (94 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCCGAGTTCGAGAGATGTAACTA
Found at i:34370538 original size:40 final size:39
Alignment explanation
Indices: 34370472--34370636 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
34370462 AAATTGAATG
* *
34370472 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
34370511 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
34370551 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
34370589 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
34370629 ATATCCGG
1 ATATCCGG
34370637 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:34370604 original size:38 final size:38
Alignment explanation
Indices: 34370473--34370620 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
34370463 AATTGAATGA
* * * *
34370473 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
34370512 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
34370550 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
34370590 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34370621 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:34370635 original size:78 final size:78
Alignment explanation
Indices: 34370472--34370636 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
34370462 AAATTGAATG
*
34370472 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
34370537 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
34370551 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
34370614 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
34370629 ATATCCGG
1 ATATCCGG
34370637 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:34378545 original size:40 final size:40
Alignment explanation
Indices: 34378460--34378610 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
34378450 AATTGAATGA
* * *
34378460 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
34378500 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
34378541 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
34378580 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34378611 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:34378624 original size:40 final size:40
Alignment explanation
Indices: 34378496--34378626 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
34378486 TATGCTGGAA
* * *
34378496 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
34378536 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
34378576 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
34378616 ATTATATCCGG
1 ATTATATCCGG
34378627 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:34388892 original size:29 final size:29
Alignment explanation
Indices: 34388808--34388931 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
34388798 AAGTCTACAT
* *
34388808 ACATGCATATGGCCCATTATGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
34388836 TCATTCATATGGCCTA-CAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
34388864 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
34388893 ACATTCATATGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
34388922 ACATTCATAT
1 ACATTCATAT
34388932 ACATGCTTTC
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 5 0.06
28 29 0.36
29 47 0.58
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:34389161 original size:16 final size:16
Alignment explanation
Indices: 34389140--34389174 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
34389130 GTAGATAAAC
*
34389140 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
34389156 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
34389172 TTT
1 TTT
34389175 TGGGATTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.23, G:0.20, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:34393402 original size:29 final size:29
Alignment explanation
Indices: 34393335--34393454 Score: 161
Period size: 29 Copynumber: 4.2 Consensus size: 29
34393325 AAGTCTACAT
* * *
34393335 ACATGCATATGTCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
34393363 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
34393392 ATATTCGTATGGCCCATTAGGCCCAAATA
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
34393421 ACATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
34393450 ACATT
1 ACATT
34393455 TGTATACATG
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.25
29 59 0.75
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:34395126 original size:29 final size:29
Alignment explanation
Indices: 34395093--34395195 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
34395083 GTGACGAGAT
34395093 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
34395122 TGGCACTAAGTGTGCGTGCTAGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
34395151 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
34395180 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
34395196 AGTTCGGAGG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:34403062 original size:29 final size:29
Alignment explanation
Indices: 34403029--34403131 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
34403019 GTGACGAGAT
34403029 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34403058 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
34403087 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
34403116 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
34403132 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:34404782 original size:8 final size:8
Alignment explanation
Indices: 34404771--34404804 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
34404761 ACTTTCAACT
34404771 TTTCGGCA
1 TTTCGGCA
*
34404779 TTTCGGCT
1 TTTCGGCA
34404787 TTTCGGCA
1 TTTCGGCA
34404795 TTTCGG-A
1 TTTCGGCA
34404802 TTT
1 TTT
34404805 GCCGATCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 4 0.17
8 20 0.83
ACGTcount: A:0.09, C:0.21, G:0.24, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:34404788 original size:16 final size:16
Alignment explanation
Indices: 34404769--34404800 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
34404759 AAACTTTCAA
34404769 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCGG
34404785 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCGG
34404801 ATTTGCCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.25, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATTTCGG
Found at i:34418548 original size:49 final size:49
Alignment explanation
Indices: 34418487--34418787 Score: 539
Period size: 49 Copynumber: 6.1 Consensus size: 49
34418477 ATGTATGAGA
*
34418487 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
34418536 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
34418585 TGTATACGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
34418634 TGTATATCTGTGATAAGGCCTAATGGCCGATGTCATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
34418683 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
34418732 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
34418781 TATATAT
1 TGTATAT
34418788 ATATGTGGCA
Statistics
Matches: 242, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 242 1.00
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.31
Consensus pattern (49 bp):
TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Done.