Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 132 of 345
Found at i:35714941 original size:40 final size:39
Alignment explanation
Indices: 35714897--35715050 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
35714887 GTTCAAAACA
* * ** * *
35714897 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
35714937 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
35714977 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
35715016 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
35715051 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:35715008 original size:39 final size:39
Alignment explanation
Indices: 35714927--35715050 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
35714917 TATGGTAACC
* *
35714927 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
35714967 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
35715006 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
35715045 CGCACA
1 CGCACA
35715051 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:35719092 original size:39 final size:40
Alignment explanation
Indices: 35719009--35719145 Score: 199
Period size: 39 Copynumber: 3.5 Consensus size: 40
35718999 CGGATGATAA
35719009 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
35719049 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
35719088 CCGGGCTAAGTGCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
35719128 CC-GGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35719146 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35726469 original size:48 final size:48
Alignment explanation
Indices: 35726409--35726518 Score: 170
Period size: 47 Copynumber: 2.3 Consensus size: 48
35726399 CTTCTTCCCT
*
35726409 CTTTCTCAATCGGTTTTCCTTTGACCGATTGCTT-CTAGTTCTTTTTCC
1 CTTTCTCAATCGGTTTTCCCTTGACCGATTGCTTCCTA-TTCTTTTTCC
35726457 CTTTCTCAATCGG-TTTCCCTTGACCGATTGCTTCCTATTCTTTTTCC
1 CTTTCTCAATCGGTTTTCCCTTGACCGATTGCTTCCTATTCTTTTTCC
* *
35726504 CTCTCTCAATAGGTT
1 CTTTCTCAATCGGTT
35726519 CTTGACAGTC
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
47 40 0.70
48 17 0.30
ACGTcount: A:0.12, C:0.29, G:0.12, T:0.47
Consensus pattern (48 bp):
CTTTCTCAATCGGTTTTCCCTTGACCGATTGCTTCCTATTCTTTTTCC
Found at i:35729179 original size:68 final size:70
Alignment explanation
Indices: 35729107--35729304 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
35729097 ACACCCTGTA
* * * *
35729107 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
35729169 ATAAAT
65 ATAAAT
*
35729175 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
35729240 ATAAAT
65 ATAAAT
*
35729246 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
35729305 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:35729218 original size:41 final size:41
Alignment explanation
Indices: 35729173--35729290 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
35729163 TGAAAGATAA
35729173 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
35729214 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35729244 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35729285 ATGTAG
1 ATGTAG
35729291 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:35729230 original size:71 final size:71
Alignment explanation
Indices: 35729141--35729304 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35729131 GAGATGTATC
35729141 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35729206 AGGACA
66 AGGACA
35729212 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35729277 AGGACA
66 AGGACA
35729283 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
35729305 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:35736397 original size:48 final size:47
Alignment explanation
Indices: 35736343--35736452 Score: 159
Period size: 47 Copynumber: 2.3 Consensus size: 47
35736333 CTTCTTCCCT
*
35736343 CTTTCTCAATCGGTTTCCCTTTGACCGATTGCTTC-TAGTTCTTTTTCC
1 CTTTCTCAATCGGTTTCCC-TTGACCGATTACTTCTTA-TTCTTTTTCC
* *
35736391 CTTTCTCAATCGTTTTCCCTTGATCGATTACTTCTTATTCTTTTTCC
1 CTTTCTCAATCGGTTTCCCTTGACCGATTACTTCTTATTCTTTTTCC
*
35736438 CTCTCTCAATCGGTT
1 CTTTCTCAATCGGTT
35736453 CTTAGCAGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
47 36 0.64
48 20 0.36
ACGTcount: A:0.12, C:0.29, G:0.10, T:0.49
Consensus pattern (47 bp):
CTTTCTCAATCGGTTTCCCTTGACCGATTACTTCTTATTCTTTTTCC
Found at i:35736748 original size:21 final size:21
Alignment explanation
Indices: 35736722--35736764 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
35736712 ATCCTCTGTT
35736722 GTGTCGAATGTTGATTTGACA
1 GTGTCGAATGTTGATTTGACA
35736743 GTGTCGAATGTTGATTTGACA
1 GTGTCGAATGTTGATTTGACA
35736764 G
1 G
35736765 CATCAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.30, T:0.37
Consensus pattern (21 bp):
GTGTCGAATGTTGATTTGACA
Found at i:35741673 original size:15 final size:16
Alignment explanation
Indices: 35741647--35741689 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
35741637 ACCCATCCAA
35741647 AGCCCAATTCAG-CTCG
1 AGCCCAATTCAGCCT-G
35741663 AGCCC-ATTCAGCCTG
1 AGCCCAATTCAGCCTG
*
35741678 AGCCCTATTCAG
1 AGCCCAATTCAG
35741690 ATAACAGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.23, C:0.37, G:0.19, T:0.21
Consensus pattern (16 bp):
AGCCCAATTCAGCCTG
Found at i:35742144 original size:28 final size:28
Alignment explanation
Indices: 35742109--35742167 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
35742099 CTAGGGTATA
35742109 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
35742137 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
35742165 TCG
1 TCG
35742168 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:35742833 original size:27 final size:27
Alignment explanation
Indices: 35742802--35742962 Score: 214
Period size: 27 Copynumber: 6.0 Consensus size: 27
35742792 TTCTACCCTA
*
35742802 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
35742829 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
35742856 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
35742883 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
35742910 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
35742937 CAAGGGTATTTTGGTAATTCTATAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
35742963 TTGAAGGTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:35742872 original size:54 final size:54
Alignment explanation
Indices: 35742805--35742955 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
35742795 TACCCTACAA
* *
35742805 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
35742859 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
35742913 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
35742956 CTATAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:35742979 original size:27 final size:27
Alignment explanation
Indices: 35742948--35743198 Score: 331
Period size: 27 Copynumber: 9.3 Consensus size: 27
35742938 AAGGGTATTT
* *
35742948 TGGTAATTCTATAAATTGAAGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
35742975 CGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* * *
35743002 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
35743029 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
35743056 TGGTAATTCTGTAAATCGAGGATAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
35743083 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
35743110 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
** *
35743137 CAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
*
35743164 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
35743191 TGGTAATT
1 TGGTAATT
35743199 TTACAAGTCG
Statistics
Matches: 193, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TGGTAATTCTGTAAATTGAGGGTAAAA
Found at i:35742981 original size:81 final size:81
Alignment explanation
Indices: 35742813--35742982 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
35742803 AAGGGTATTT
* * * *
35742813 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
***
35742878 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
35742894 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTA
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
**
35742959 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
35742975 CGGTAATT
1 CGGTAATT
35742983 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
TAAACCAAGGGTAAAA
Found at i:35743212 original size:54 final size:54
Alignment explanation
Indices: 35742948--35743198 Score: 403
Period size: 54 Copynumber: 4.6 Consensus size: 54
35742938 AAGGGTATTT
* * * **
35742948 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
35743002 CGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
35743056 TGGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
35743110 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
35743164 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
35743199 TTACAAGTCG
Statistics
Matches: 183, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 183 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:35744281 original size:25 final size:24
Alignment explanation
Indices: 35744253--35744309 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
35744243 ATTATGAATC
* *
35744253 GGTATGCTCTTACAAGCTGTAAATT
1 GGTAAGCTCTCACAAGCTG-AAATT
* *
35744278 GGTAAGCTCTCAGAAGCTGAAATC
1 GGTAAGCTCTCACAAGCTGAAATT
*
35744302 AGTAAGCT
1 GGTAAGCT
35744310 TATACGAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (24 bp):
GGTAAGCTCTCACAAGCTGAAATT
Found at i:35746570 original size:39 final size:39
Alignment explanation
Indices: 35746527--35746702 Score: 289
Period size: 39 Copynumber: 4.5 Consensus size: 39
35746517 GCACGTGGCT
* *
35746527 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
*
35746566 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* * **
35746605 TGCAGACTTCATGTCCGGATATATTTCCATAATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
35746644 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
35746683 TGCGGACCTCATGTCCGGAT
1 TGCGGACCTCATGTCCGGAT
35746703 GTATCTCAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:35753971 original size:39 final size:39
Alignment explanation
Indices: 35753911--35754132 Score: 320
Period size: 39 Copynumber: 5.7 Consensus size: 39
35753901 GCACGTGGCT
* *
35753911 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
35753950 TGCGGACCTCATGTTCAGATATA-TTCCTAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCC-AGCATATAGCC
* *
35753989 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAACC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
35754028 TGCGGACTTCATGTCCGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
*
35754067 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCT
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
35754106 TGCAGACCTCATGTCCAGATGTATTTC
1 TGCGGACCTCATGTCCGGATATATTTC
35754133 AAATACCATG
Statistics
Matches: 165, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 4 0.02
39 158 0.96
40 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:35756368 original size:42 final size:43
Alignment explanation
Indices: 35756306--35756431 Score: 139
Period size: 42 Copynumber: 2.9 Consensus size: 43
35756296 TGCATGTAAT
*
35756306 TCAATATCGATGCCTCTGTCCCAGACAAGGTCTTACAC-AAA-A
1 TCAA-ATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAATA
* * * *
35756348 TCAGATACGATGCCTATGTCCCAGATATGGTCTTACACGTAAATC
1 TCAAAT-CGATGCCTATGTCCCAGACAAGGTCTTACACG-AAATA
* * *
35756393 TCAAATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 TCAAATCGATGCCTATGTCCCAGACAAGGTCTTACACGA
35756432 TATCTTAGAT
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
41 2 0.03
42 31 0.44
43 1 0.01
44 31 0.44
45 5 0.07
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
TCAAATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAATA
Found at i:35762375 original size:40 final size:40
Alignment explanation
Indices: 35762330--35762497 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
35762320 CGGAATACAA
35762330 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
35762370 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
** **
35762410 CCGGATATAATAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
35762450 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
35762490 CCGGATAT
1 CCGGATAT
35762498 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:35762470 original size:80 final size:80
Alignment explanation
Indices: 35762346--35762497 Score: 236
Period size: 80 Copynumber: 1.9 Consensus size: 80
35762336 ATAACCACAC
* *
35762346 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGCC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
35762411 CGGATATAATAACTT
66 CGGATATAATAACTT
* *
35762426 GCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAATGCCTTCGGGTATTAA
35762489 CCCGGATAT
64 CCCGGATAT
35762498 CATTCAATTG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 63 0.95
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
CGGATATAATAACTT
Found at i:35770444 original size:48 final size:47
Alignment explanation
Indices: 35770367--35770828 Score: 368
Period size: 48 Copynumber: 9.6 Consensus size: 47
35770357 TGGTACATGT
* * * *
35770367 GAGCCTGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGA
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCATTATTATGA
** * * * * * * *
35770415 GAGATAGTGTAAAACCATGTCTAGGACATGGCATCGGCCTCAATAGGT
1 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCATTATTATGA
* *
35770463 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTATTGTGA
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCATTATTATGA
* ** * * * *
35770511 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCATTATTATGA
* * * *
35770559 GAGCCAGTGTACGACCATGTTTGGAACATGGCATCAGCATTGTTATGA
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCATTATTATGA
* * * * * * *
35770607 GAGCTACTGTAAGACCATGCCTGGGACATGGGATCGGCCTCAATT-TGT
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCAT-TATTATGA
* *
35770655 GAGCCAGTGTAAGACCATGTTTTGAACATGGCATCGGCATTATTATGA
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCATTATTATGA
* * * * * * *
35770703 AAGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCCTCAATATGT
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCATTATTATGA
* * * * **
35770751 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCTTTGTTACAA
1 GAGCCAGTGTAAGACCATG-TTGGGACATGGCATCGGCATTATTATGA
* *
35770799 GAACCATTGTAAGACCATGTCTGGGACATG
1 GAGCCAGTGTAAGACCATGT-TGGGACATG
35770829 ACATTGACAT
Statistics
Matches: 321, Mismatches: 86, Indels: 14
0.76 0.20 0.03
Matches are distributed among these distances:
47 6 0.02
48 311 0.97
49 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTTGGGACATGGCATCGGCATTATTATGA
Found at i:35770834 original size:96 final size:96
Alignment explanation
Indices: 35770363--35770834 Score: 665
Period size: 96 Copynumber: 4.9 Consensus size: 96
35770353 GTTATGGTAC
* * * *
35770363 ATGTGAGCCTGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGATAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
* *
35770428 ACCATGTCTAGGACATGGCATCGGCCTCAAT
66 ACCATGTCTGGGACATGGCATTGGCCTCAAT
* * * * *
35770459 AGGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTATTGTGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
*
35770524 ACCATGTCTGGGACATGGCATTAGCCTCAAT
66 ACCATGTCTGGGACATGGCATTGGCCTCAAT
* * *
35770555 ATGTGAGCCAGTGTACGACCATGTTTGGAACATGGCATCAGCATTGTTATGAGAGCTACTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
* * *
35770620 ACCATGCCTGGGACATGGGATCGGCCTCAAT
66 ACCATGTCTGGGACATGGCATTGGCCTCAAT
* * * *
35770651 TTGTGAGCCAGTGTAAGACCATGTTTTGAACATGGCATCGGCATTATTATGAAAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
*
35770716 ACCATGTTTGGGACATGGCATTGGCCTCAAT
66 ACCATGTCTGGGACATGGCATTGGCCTCAAT
* * ** * * *
35770747 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCTTTGTTACAAGAACCATTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
*
35770812 ACCATGTCTGGGACATGACATTG
66 ACCATGTCTGGGACATGGCATTG
35770835 ACATCTTACT
Statistics
Matches: 328, Mismatches: 48, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 328 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATTGGCCTCAAT
Found at i:35773299 original size:79 final size:80
Alignment explanation
Indices: 35773180--35773363 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
35773170 GCTACTCGTT
* * * *
35773180 CAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCACCAAGGCCTACGGGACTTAACCCGG
1 CAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACCAAGGCCTACGGGACTTAACCCGG
* *
35773245 ATATCACGA-TTGCA
66 ATATCACCACTAGCA
* * * * * * *
35773259 CAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCGCACGAATGCCTTCGGGTCTTAGCCCG
1 CAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCGCACCAAGGCCTACGGGACTTAACCCG
35773323 GATATCACCACTAGCA
65 GATATCACCACTAGCA
* * *
35773339 CCATTGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTCGGGTCTTAGCCCGG
35773364 TTATAATTTC
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 60 0.69
80 26 0.30
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (80 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACCAAGGCCTACGGGACTTAACCCGG
ATATCACCACTAGCA
Found at i:35773308 original size:40 final size:40
Alignment explanation
Indices: 35773256--35773363 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
35773246 TATCACGATT
** *
35773256 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* **
35773296 GCACGAATGCCTTCGGGTCTTAGCCCGGATATCACCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
35773336 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
35773364 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:35777334 original size:47 final size:46
Alignment explanation
Indices: 35777266--35777393 Score: 145
Period size: 47 Copynumber: 2.7 Consensus size: 46
35777256 TTATTGTGAA
* *
35777266 CTAGTGTAAGACATGTCTGGGATATGCATCGGCCACATT-ATGAGTG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGAGTG
* * *
35777312 CTAGTGTAAAACCATGTTTGGGACATGGCACCGG--CATTGAGACGAGTG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT--GACGAGTG
35777360 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC
35777394 TTGAGACATA
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
45 4 0.06
46 16 0.24
47 25 0.37
48 22 0.33
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACGAGTG
Found at i:35777364 original size:48 final size:46
Alignment explanation
Indices: 35777307--35777400 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 46
35777297 GCCACATTAT
*
35777307 GAGTGCTAGTGTAAAACCATGTTTGGGACATGGCACCGGCATTGAGAC
1 GAGTGCTAGTGTAAAA-CATGTCTGGGACAT-GCACCGGCATTGAGAC
* * *
35777355 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAC
1 GAGTGCTAGTGTAAAACATGTCTGGGACATGCACCGGCATTGAGAC
35777401 ATAAGTCAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 14 0.33
47 13 0.31
48 15 0.36
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (46 bp):
GAGTGCTAGTGTAAAACATGTCTGGGACATGCACCGGCATTGAGAC
Found at i:35782796 original size:13 final size:13
Alignment explanation
Indices: 35782778--35782802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35782768 GTTTAATTAG
35782778 TTAATTAGTTTAT
1 TTAATTAGTTTAT
35782791 TTAATTAGTTTA
1 TTAATTAGTTTA
35782803 ATAAACAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (13 bp):
TTAATTAGTTTAT
Found at i:35791320 original size:71 final size:71
Alignment explanation
Indices: 35791236--35791399 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35791226 CGATTTGTCT
35791236 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35791301 CTTTCA
66 CTTTCA
35791307 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35791372 CTTTCA
66 CTTTCA
35791378 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35791400 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:35791437 original size:71 final size:70
Alignment explanation
Indices: 35791236--35791433 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
35791226 CGATTTGTCT
* * * *
35791236 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35791301 CTTTCA
65 CTTTCA
* * * *
35791307 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35791372 CTTTCA
65 CTTTCA
* *
35791378 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35791434 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35798576 original size:71 final size:71
Alignment explanation
Indices: 35798490--35798653 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35798480 CGATTTGTCT
35798490 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35798555 CTTTCA
66 CTTTCA
35798561 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35798626 CTTTCA
66 CTTTCA
35798632 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35798654 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:35798691 original size:71 final size:70
Alignment explanation
Indices: 35798490--35798687 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
35798480 CGATTTGTCT
* * * *
35798490 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35798555 CTTTCA
65 CTTTCA
* * * *
35798561 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35798626 CTTTCA
65 CTTTCA
* *
35798632 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35798688 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35805828 original size:71 final size:71
Alignment explanation
Indices: 35805742--35805905 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35805732 CGATTTGTCT
35805742 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35805807 CTTTCA
66 CTTTCA
35805813 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
35805878 CTTTCA
66 CTTTCA
35805884 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
35805906 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:35805943 original size:71 final size:70
Alignment explanation
Indices: 35805742--35805939 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
35805732 CGATTTGTCT
* * * *
35805742 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35805807 CTTTCA
65 CTTTCA
* * * *
35805813 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
35805878 CTTTCA
65 CTTTCA
* *
35805884 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
35805940 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:35808079 original size:14 final size:14
Alignment explanation
Indices: 35808060--35808089 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
35808050 GATAAATACT
35808060 TGATTTGTTCTTAA
1 TGATTTGTTCTTAA
35808074 TGATTTGTTCTTAA
1 TGATTTGTTCTTAA
35808088 TG
1 TG
35808090 CTTTAGTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.57
Consensus pattern (14 bp):
TGATTTGTTCTTAA
Found at i:35808537 original size:13 final size:13
Alignment explanation
Indices: 35808519--35808543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35808509 AGTTTAATTA
35808519 GTTAATTAGTTTG
1 GTTAATTAGTTTG
35808532 GTTAATTAGTTT
1 GTTAATTAGTTT
35808544 AATAAACAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
GTTAATTAGTTTG
Found at i:35812088 original size:47 final size:47
Alignment explanation
Indices: 35812037--35812373 Score: 552
Period size: 47 Copynumber: 7.2 Consensus size: 47
35812027 TATACACTTC
* * **
35812037 CACATTTATCACATTAGCCATTCTACCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
35812084 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
35812131 CACATTCATCACATTGGCCATTCGGCCTTAT--CACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
*
35812176 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
35812223 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* *
35812270 CACATTCATCACATTGGCCATTCGGCCTTAGCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * * **
35812317 CACATTCATCACATTAGCCATTCGGCCTTATCACATATATACACATT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
35812364 CACATTCATC
1 CACATTCATC
35812374 TCATAAAATC
Statistics
Matches: 275, Mismatches: 13, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
45 45 0.16
47 230 0.84
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
Found at i:35812095 original size:25 final size:25
Alignment explanation
Indices: 35812066--35812143 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
35812056 ATTCTACCTT
35812066 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
35812091 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
35812113 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
35812138 ATCACA
1 ATCACA
35812144 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:35812208 original size:139 final size:140
Alignment explanation
Indices: 35812037--35812373 Score: 577
Period size: 139 Copynumber: 2.4 Consensus size: 140
35812027 TATACACTTC
* ** *
35812037 CACATTTATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
*
35812102 CATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-A
66 CATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAGCACAA
35812166 TATGCATGTT
131 TATGCATGTT
*
35812176 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
35812241 CATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAGCACAT
66 CATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAGCACA-
35812306 ATATGCATGTT
130 ATATGCATGTT
* **
35812317 CACATTCATCACATTAGCCATTCGGCCTTATCACATATATACACATTCACATTCATC
1 CACATTCATCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
35812374 TCATAAAATC
Statistics
Matches: 186, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
139 122 0.66
141 64 0.34
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (140 bp):
CACATTCATCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAGCACAA
TATGCATGTT
Found at i:35822684 original size:45 final size:44
Alignment explanation
Indices: 35822596--35822763 Score: 144
Period size: 45 Copynumber: 3.7 Consensus size: 44
35822586 GGGTTAAGGT
35822596 GCCAATGCCATGTCCCAGACATGGTCTTACACTGACATATCTCGTA-
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTGACATATCTCG-AG
** * *
35822642 GCTGATGCATGTCCCAAACATGTCTTACACTGA-TTACGTCTCGAG
1 GCCAATGCATGTCCCAGACATGTCTTACACTGACATA--TCTCGAG
* * * *
35822687 GCCAATGCATGTCCCAGACATGTCTTATACT-AGCACTCGTCTCAAT
1 GCCAATGCATGTCCCAGACATGTCTTACACTGA-CA-T-ATCTCGAG
*
35822733 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCAATG-CATGTCCCAGACAT-GTCTTACA
35822764 ATGGCTCTCA
Statistics
Matches: 99, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.02
44 14 0.14
45 45 0.45
46 16 0.16
47 15 0.15
48 7 0.07
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (44 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTGACATATCTCGAG
Found at i:35830350 original size:27 final size:28
Alignment explanation
Indices: 35830293--35830362 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
35830283 AAACTTGTAC
*
35830293 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
35830321 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
35830348 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
35830363 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:35830373 original size:27 final size:27
Alignment explanation
Indices: 35830293--35830374 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
35830283 AAACTTGTAC
* * *
35830293 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
35830321 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
35830348 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
35830375 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:35834099 original size:40 final size:39
Alignment explanation
Indices: 35833972--35834101 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
35833962 ATGCTGGAAA
* *
35833972 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
35834012 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
35834052 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
35834092 TTATATCCGG
1 TTATATCCGG
35834102 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:35841999 original size:40 final size:39
Alignment explanation
Indices: 35841872--35842001 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
35841862 ATGCTGGAAA
* *
35841872 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
35841912 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
35841952 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
35841992 TTATATCCGG
1 TTATATCCGG
35842002 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:35860385 original size:35 final size:35
Alignment explanation
Indices: 35860276--35860516 Score: 211
Period size: 35 Copynumber: 6.9 Consensus size: 35
35860266 TTTTATATGG
* * * *
35860276 CCGAATATATAAGTTCAATATATCATCACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGCAA
* * * * *
35860311 CCTAATGTTCAAGTTCAATA-AACCAGCTCATATG--G
1 CCGAATATACAAGTTCAATATAA-C--CTCACATGCAA
* * *
35860346 CCGAATATACTAA-TTCAATAGAATCTCACATGTAA
1 CCGAATATAC-AAGTTCAATATAACCTCACATGCAA
* *
35860381 CCGAATATACAAGTTCAATATAAGCTCACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGCAA
** * * * *
35860416 TTGAATACATAAGTTCAATATAACCTCACATCCAG
1 CCGAATATACAAGTTCAATATAACCTCACATGCAA
* * *
35860451 CCAAATATACAAGTTCAATATAACCTCGCATGCAG
1 CCGAATATACAAGTTCAATATAACCTCACATGCAA
35860486 CCGAATATACAAGTTCAATATAACCTCACAT
1 CCGAATATACAAGTTCAATATAACCTCACAT
35860517 TTACTTACCT
Statistics
Matches: 165, Mismatches: 33, Indels: 16
0.77 0.15 0.07
Matches are distributed among these distances:
33 7 0.04
34 3 0.02
35 145 0.88
36 4 0.02
37 6 0.04
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (35 bp):
CCGAATATACAAGTTCAATATAACCTCACATGCAA
Found at i:35862950 original size:25 final size:25
Alignment explanation
Indices: 35862916--35862966 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
35862906 ACCGCGATGT
35862916 AAATCTCGGATATCTATCTGAAACA
1 AAATCTCGGATATCTATCTGAAACA
35862941 AAATCTCGGATATCTATCTGAAACA
1 AAATCTCGGATATCTATCTGAAACA
35862966 A
1 A
35862967 TAGATATAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (25 bp):
AAATCTCGGATATCTATCTGAAACA
Found at i:35868598 original size:34 final size:34
Alignment explanation
Indices: 35868560--35868625 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
35868550 TTAAACCCTC
*
35868560 TTTCAATAGCAGTAGCAGTCTCGGCCTGAGCCTA
1 TTTCAATAACAGTAGCAGTCTCGGCCTGAGCCTA
* * * * *
35868594 TTTCAGTAACAGTGGTAGTCTGGGCCTTAGCC
1 TTTCAATAACAGTAGCAGTCTCGGCCTGAGCC
35868626 CATTACATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (34 bp):
TTTCAATAACAGTAGCAGTCTCGGCCTGAGCCTA
Found at i:35869091 original size:18 final size:19
Alignment explanation
Indices: 35869051--35869091 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
35869041 CATATCGCAG
*
35869051 GCCCATGTGGACCTACACA
1 GCCCATGTGGACCCACACA
*
35869070 -CCCATGTGG-CCCACATA
1 GCCCATGTGGACCCACACA
35869087 GCCCA
1 GCCCA
35869092 AACATGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.24, C:0.41, G:0.20, T:0.15
Consensus pattern (19 bp):
GCCCATGTGGACCCACACA
Found at i:35873170 original size:80 final size:80
Alignment explanation
Indices: 35873086--35873234 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
35873076 TATGGTAACC
* * * *
35873086 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
35873150 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
35873166 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
35873231 CCGG
66 CCGG
35873235 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:35873176 original size:40 final size:38
Alignment explanation
Indices: 35873127--35873234 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
35873117 ATCACGATTT
*
35873127 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
35873167 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
35873207 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
35873235 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:35881281 original size:80 final size:80
Alignment explanation
Indices: 35881197--35881345 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
35881187 TATGGTAACC
* * * *
35881197 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
35881261 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
35881277 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
35881342 CCGG
66 CCGG
35881346 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:35881287 original size:40 final size:38
Alignment explanation
Indices: 35881238--35881345 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
35881228 ATCACGATTT
*
35881238 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
35881278 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
35881318 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
35881346 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:35883677 original size:31 final size:31
Alignment explanation
Indices: 35883635--35883736 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
35883625 CCTTTTCGTA
35883635 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
35883672 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
35883704 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
35883735 TT
1 TT
35883737 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:35883677 original size:38 final size:38
Alignment explanation
Indices: 35883612--35883719 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
35883602 TCAATCATGC
* *
35883612 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
35883651 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
35883689 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
35883720 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:35883974 original size:24 final size:24
Alignment explanation
Indices: 35883928--35884022 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
35883918 GCTTTATCAT
*
35883928 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
35883953 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
35883977 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
35884000 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35884023 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:35884007 original size:47 final size:49
Alignment explanation
Indices: 35883928--35884021 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
35883918 GCTTTATCAT
*
35883928 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
35883977 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
35884022 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:35884098 original size:20 final size:20
Alignment explanation
Indices: 35884073--35884132 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
35884063 TATGATTACC
35884073 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
35884093 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
35884113 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
35884133 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:35884207 original size:25 final size:25
Alignment explanation
Indices: 35884175--35884222 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35884165 ATACATAAAC
* * *
35884175 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
35884200 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
35884223 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:35891991 original size:31 final size:31
Alignment explanation
Indices: 35891949--35892050 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
35891939 CCTTTTCGTA
35891949 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
35891986 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
35892018 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
35892049 TT
1 TT
35892051 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:35891991 original size:38 final size:38
Alignment explanation
Indices: 35891926--35892033 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
35891916 TCAATCATGC
* *
35891926 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
35891965 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
35892003 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
35892034 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:35892288 original size:24 final size:24
Alignment explanation
Indices: 35892242--35892335 Score: 115
Period size: 24 Copynumber: 4.0 Consensus size: 24
35892232 GCTTTATCAT
*
35892242 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
35892267 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
35892291 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
35892313 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35892336 TCACTTCCTC
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
22 19 0.31
23 7 0.11
24 23 0.37
25 13 0.21
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:35892319 original size:22 final size:23
Alignment explanation
Indices: 35892263--35892334 Score: 112
Period size: 22 Copynumber: 3.1 Consensus size: 23
35892253 CCTAGCCTCT
35892263 TTTAATAACTGGGGCCA-AAGCCC
1 TTTAATAACTGGGG-CATAAGCCC
35892286 TTTCAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
35892310 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
35892332 TTT
1 TTT
35892335 TTCACTTCCT
Statistics
Matches: 47, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
22 22 0.47
23 5 0.11
24 20 0.43
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:35892411 original size:20 final size:20
Alignment explanation
Indices: 35892386--35892445 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
35892376 TATGATTACC
35892386 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
35892406 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
35892426 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
35892446 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:35892520 original size:25 final size:25
Alignment explanation
Indices: 35892488--35892535 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35892478 ATACATAAAC
* * *
35892488 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
35892513 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
35892536 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:35894761 original size:48 final size:48
Alignment explanation
Indices: 35894705--35894973 Score: 193
Period size: 48 Copynumber: 5.6 Consensus size: 48
35894695 GCTAGTGTAG
* *
35894705 GACCATGTCTGGGACATGACATCGGTAAC-ATTATGAGAGCCAGTATAA
1 GACCATGTCTGGGACATGGCATCGGCAACGA-TATGAGAGCCAGTATAA
* * * * * *
35894753 GACCATGTCTGGGACATGGCACCGGCATCGATATGTGTGCTAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTATAA
* ** * * * *
35894801 GACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGTCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTATAA
* * ** * * * *
35894849 GACCATGT-TTGGAGCATGGCATCAGCATTGTTAT-ATGTGTCAGTGTAA
1 GACCATGTCTGGGA-CATGGCATCGGCAACGATATGA-GAGCCAGTATAA
* * * * * *
35894897 GACCATGTCTAGGACATGGCACCGGCACCAATGTATGAGAGCGAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCAACGA--TATGAGAGCCAGTATAA
* *
35894947 AACCATGTCCGGGACATGGCATCGGCA
1 GACCATGTCTGGGACATGGCATCGGCA
35894974 TTTTACCCTT
Statistics
Matches: 178, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
47 4 0.02
48 133 0.75
49 5 0.03
50 35 0.20
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GACCATGTCTGGGACATGGCATCGGCAACGATATGAGAGCCAGTATAA
Found at i:35894850 original size:96 final size:94
Alignment explanation
Indices: 35894686--35894974 Score: 314
Period size: 96 Copynumber: 3.0 Consensus size: 94
35894676 ACATTTGGTT
* * ** * *
35894686 GATATGTGTGCTAGTGTAGGACCATGTCTGGGACATGACATCGGTAACATTATGAGAGCCAGTAT
1 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CCCAATATGAGAG-CAGTGT
*
35894751 AAGACCATGTCTGGGACATGGCACCGGCATC
64 AAGACCATGTCTGGGACATGGCATCGGCATC
* *
35894782 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGTCAGTGT
1 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CAATATGAGAG-CAGTGT
* * *
35894847 AAGACCATGT-TTGGAGCATGGCATCAGCATT
64 AAGACCATGTCTGGGA-CATGGCATCGGCATC
* *
35894878 GTTATATGTGT-C-AGTGTAAGACCATGTCTAGGACATGGCACCGGCACCAATGTATGAGAGCGA
1 G--ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCAA--TATGAGAGC-A
* *
35894941 GTGTAAAACCATGTCCGGGACATGGCATCGGCAT
60 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
35894975 TTTACCCTTT
Statistics
Matches: 163, Mismatches: 21, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
95 4 0.02
96 111 0.68
97 3 0.02
98 42 0.26
99 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCAATATGAGAGCAGTGTAA
GACCATGTCTGGGACATGGCATCGGCATC
Found at i:35899638 original size:43 final size:43
Alignment explanation
Indices: 35899580--35899689 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 43
35899570 AGAAAAAAAT
35899580 GCCAC-AAAAGATCATGACTTTTAGCGGCGTCTGCT-GGAAAAGC
1 GCCACTAAAAG-TCATGACTTTTAGCGGCGTCTG-TGGGAAAAGC
* * **
35899623 GCCACTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGC
1 GCCACTAAAAGTCATGACTTTTAGCGGCGTCTGTGGGAAAAGC
*
35899666 GCCGCTAAAAGTCATGACTTTTAG
1 GCCACTAAAAGTCATGACTTTTAG
35899690 TGACACTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.90
44 5 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (43 bp):
GCCACTAAAAGTCATGACTTTTAGCGGCGTCTGTGGGAAAAGC
Found at i:35900108 original size:21 final size:21
Alignment explanation
Indices: 35900084--35900135 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
35900074 TCTACTGCCA
*
35900084 TCGCTGCTGCC-TCTGCCTCCC
1 TCGCTGCTGCCGT-TGCCACCC
35900105 TCGCTGCTGCCGTTGCCACCC
1 TCGCTGCTGCCGTTGCCACCC
*
35900126 TCACTGCTGC
1 TCGCTGCTGC
35900136 ATCCGCTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.04, C:0.48, G:0.21, T:0.27
Consensus pattern (21 bp):
TCGCTGCTGCCGTTGCCACCC
Found at i:35900574 original size:13 final size:14
Alignment explanation
Indices: 35900548--35900576 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
35900538 ACTAACGACG
35900548 AATTAAACCATTAT
1 AATTAAACCATTAT
35900562 AATTAAA-CATTAT
1 AATTAAACCATTAT
35900575 AA
1 AA
35900577 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:35906608 original size:27 final size:27
Alignment explanation
Indices: 35906562--35906933 Score: 182
Period size: 27 Copynumber: 13.8 Consensus size: 27
35906552 TATTTTGAAA
* * *
35906562 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCAAAT
* **
35906589 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAT
* * **
35906616 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAT
* ****
35906643 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCAAAT
* * * ****
35906670 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCAAAT
* * *
35906697 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAT
* * * *
35906724 TACTCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAT
* *
35906751 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAT
* * * * * *
35906778 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAT
* * *
35906804 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAT
* * *
35906831 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAT
* * * *
35906858 TACCACT-GGTTTGTGAAATTACTGAAA-
1 TACC-CTCGATTTATAAAATTAC-CAAAT
* * *
35906885 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAT
*
35906912 TACCC-CTGATTTACAAAATTAC
1 TACCCTC-GATTTATAAAATTAC
35906934 AGAAATACCC
Statistics
Matches: 284, Mismatches: 50, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
26 26 0.09
27 254 0.89
28 4 0.01
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAT
Found at i:35906719 original size:54 final size:54
Alignment explanation
Indices: 35906589--35906720 Score: 201
Period size: 54 Copynumber: 2.4 Consensus size: 54
35906579 ATTACCAAAG
*
35906589 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * **
35906643 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* *
35906697 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTATAGAATTACTA
35906721 AAATACTCTT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:35906755 original size:54 final size:54
Alignment explanation
Indices: 35906697--35907027 Score: 260
Period size: 54 Copynumber: 6.1 Consensus size: 54
35906687 ATTACTGTTT
* * *
35906697 TACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * * *
35906751 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* ** * *
35906804 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *** * * *
35906858 TACCACT-GGTTTGTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * **
35906912 TACCC-CTGATTTACAAAATTAC-AGAAATACCCTTGACTTTCTAAAAATTATAAAAA
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCTT-AGTTTGT-AAAATTACCAAAA
* * * * * * *
35906968 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
35907022 CACCCT
1 TACCCT
35907028 TGTAGGGTGA
Statistics
Matches: 220, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
52 1 0.00
53 44 0.20
54 126 0.57
55 10 0.05
56 39 0.18
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:35906755 original size:81 final size:81
Alignment explanation
Indices: 35906559--35906760 Score: 215
Period size: 81 Copynumber: 2.5 Consensus size: 81
35906549 CAATATTTTG
* * * *
35906559 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCG
1 AAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
*
35906624 ATTTACAGAATTACCA
66 ATTTACAAAATTACCA
*** * ***** * **
35906640 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
*
35906705 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* * *
35906721 AAATACTCTTGGTTTATAAAATTACCAAAATACCCTCGAT
1 AAATACCCTCGATTTATAAAATTACCAAAATACCCTCGAT
35906761 CAGTAAAATT
Statistics
Matches: 91, Mismatches: 30, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (81 bp):
AAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
ATTTACAAAATTACCA
Found at i:35906821 original size:80 final size:81
Alignment explanation
Indices: 35906711--35906917 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 81
35906701 CTCGATTTAC
* * *
35906711 AAAATTACTAAAATACTCTTGGTTTATAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
35906775 AAATACC-CTAGTCTGT
65 AAATACCACTAGTCTGT
* * **
35906791 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
* *
35906856 AATACCACTGGTTTGT
66 AATACCACTAGTCTGT
* * **
35906872 GAAATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCC
35906918 TGATTTACAA
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.02
80 65 0.59
81 43 0.39
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:35906930 original size:81 final size:80
Alignment explanation
Indices: 35906711--35906944 Score: 244
Period size: 81 Copynumber: 2.9 Consensus size: 80
35906701 CTCGATTTAC
* * ** * *
35906711 AAAATTACTAAAATACTCTTGGTTTATAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTACC
1 AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GATTTA-TAAAATTACC
35906774 AAAATACCCTAGTCTGT
64 AAAATACCCTAGTCTGT
* ** *
35906791 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGA-TTTATAAAATTACCA
* *
35906855 AAATACCACTGGTTTGT
65 AAATACC-CTAGTCTGT
* * *
35906872 GAAATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTA-CA
1 AAAATTACTAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
35906935 GAAATACCCT
65 -AAATACCCT
35906945 TGACTTTCTA
Statistics
Matches: 132, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
79 1 0.01
80 64 0.48
81 66 0.50
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCAA
AATACCCTAGTCTGT
Found at i:35906939 original size:27 final size:26
Alignment explanation
Indices: 35906711--35906971 Score: 172
Period size: 27 Copynumber: 9.6 Consensus size: 26
35906701 CTCGATTTAC
* * * *
35906711 AAAATTACTAAAATACTCTTGGTTTAT
1 AAAATTAC-AAAATACCCCTGATTTGT
**
35906738 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTA-CAAAATACCCCT-GATTTGT
*
35906765 AAAATTACCAAAATA-CCCT-AGTCTGT
1 AAAATTA-CAAAATACCCCTGA-TTTGT
* *
35906791 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTAC-AAAATACCCCTGATTTGT
35906818 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTA-CAAAATACCCCTGA-TTTGT
* *
35906845 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTA-CAAAATACCCCTGATTTGT
* * *
35906872 GAAATTACTGAAATA-CCCTCAATTTGT
1 AAAATTAC-AAAATACCCCT-GATTTGT
**
35906899 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTA-CAAAATACCCCTGATTTGT
* *
35906926 AAAATTACAGAAATACCCTTGACTTTCT
1 AAAATTACA-AAATACCCCTGA-TTTGT
*
35906954 AAAAATTATAAAAATACC
1 -AAAATTA-CAAAATACC
35906972 ATTGGTTTAC
Statistics
Matches: 189, Mismatches: 28, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
25 2 0.01
26 24 0.13
27 138 0.73
28 10 0.05
29 14 0.07
30 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACAAAATACCCCTGATTTGT
Found at i:35906995 original size:27 final size:27
Alignment explanation
Indices: 35906670--35907006 Score: 126
Period size: 27 Copynumber: 12.4 Consensus size: 27
35906660 ATTACTGTTT
* * ***
35906670 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGGTTTACAAAATTACTGAAA
* * *
35906697 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
* * **
35906724 TACTCTTGGTTTATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
* * * * **
35906751 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACTGAAA
* * ** * *
35906778 TACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
* ** **
35906804 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
* * ** **
35906831 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
***
35906858 TACCAC-TGGTTTGTGAAATTACTGAAA
1 TACC-CTTGGTTTACAAAATTACTGAAA
*** ** **
35906885 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
* * *
35906912 TACCCCTGATTTACAAAATTACAGAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
* *
35906939 TACCCTTGACTTT-CTAAAAATTA-TAAAAA
1 TACCCTTG-GTTTAC--AAAATTACT-GAAA
*
35906968 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTGAAA
35906995 TACCCTTGGTTT
1 TACCCTTGGTTT
35907007 GTAGATTTAC
Statistics
Matches: 248, Mismatches: 52, Indels: 20
0.77 0.16 0.06
Matches are distributed among these distances:
26 22 0.09
27 200 0.81
28 8 0.03
29 18 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTGAAA
Found at i:35907124 original size:27 final size:27
Alignment explanation
Indices: 35907037--35907124 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
35907027 TTGTAGGGTG
** * *
35907037 AAATGACTAAAATACCCTTATTAGGTA
1 AAATGACTGTAATACCCCTGTTAGGTA
*
35907064 AAAAGACTGTAA-AGCCCCTG-TAGGGTA
1 AAATGACTGTAATA-CCCCTGTTA-GGTA
* *
35907091 AAGTGACTGTAATACCCCTGTTTGGTA
1 AAATGACTGTAATACCCCTGTTAGGTA
35907118 AAATGAC
1 AAATGAC
35907125 GAATATGCCC
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.06
27 43 0.90
28 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATGACTGTAATACCCCTGTTAGGTA
Found at i:35908015 original size:24 final size:25
Alignment explanation
Indices: 35907933--35908023 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 25
35907923 AGGAAGTGCT
*
35907933 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
35907958 AGAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
35907983 AAAAGGGCTTTTCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
35908007 AAAAGGGCTTTTCCCCA
1 AAAAGGGCTTTGCCCCA
35908024 ATTATTAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
24 17 0.29
25 42 0.71
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:35908039 original size:24 final size:24
Alignment explanation
Indices: 35907933--35908039 Score: 81
Period size: 25 Copynumber: 4.4 Consensus size: 24
35907923 AGGAAGTGCT
* * * *
35907933 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTTCCCCAGATTATC
* * * * *
35907957 GAGAAGGGCTTTGCCTCAGTTTACC
1 -AAAAGGGCTTTTCCCCAGATTATC
*
35907982 GAAAAGGGCTTTTCCCCAGTTTATC
1 -AAAAGGGCTTTTCCCCAGATTATC
*
35908007 AAAAGGGCTTTTCCCCA-ATTATT
1 AAAAGGGCTTTTCCCCAGATTATC
35908030 AAAAGAGGCT
1 AAAAG-GGCT
35908040 AGGCCTCCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
23 9 0.12
24 21 0.29
25 42 0.58
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTTCCCCAGATTATC
Found at i:35908281 original size:31 final size:31
Alignment explanation
Indices: 35908246--35908420 Score: 232
Period size: 31 Copynumber: 5.7 Consensus size: 31
35908236 CGTTTATAGT
*
35908246 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
35908277 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
35908308 TAAGGCTTCGGCCCAGTGATATAATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
35908339 TAAGGATTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* **
35908370 AAAGGCTTCGGCCCAGT-A-ACTG-TTAAACA
1 AAAGGCTTCGGCCCAGTGATA-TGATTTATGA
35908399 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
35908421 CCAAGACTAA
Statistics
Matches: 130, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
29 25 0.19
30 4 0.03
31 101 0.78
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:35909325 original size:9 final size:9
Alignment explanation
Indices: 35909281--35909325 Score: 65
Period size: 9 Copynumber: 5.0 Consensus size: 9
35909271 TATGTATTAC
*
35909281 GTAAGTTAA
1 GTAAGTTAT
35909290 GTAAGTT-T
1 GTAAGTTAT
35909298 AGTAAGTTAT
1 -GTAAGTTAT
35909308 GTAAGTTAT
1 GTAAGTTAT
35909317 GTAAGTTAT
1 GTAAGTTAT
35909326 TATATGATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
9 32 0.97
10 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:35912252 original size:14 final size:14
Alignment explanation
Indices: 35912235--35912288 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
35912225 TTTTTTAGAA
35912235 TTTAGGGTTTATGG
1 TTTAGGGTTTATGG
** *
35912249 TTTAAGATTTTATGA
1 TTT-AGGGTTTATGG
* *
35912264 TTTATGGTTTATAG
1 TTTAGGGTTTATGG
35912278 TTTAGGGTTTA
1 TTTAGGGTTTA
35912289 AAATTTAGGG
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:35912929 original size:120 final size:120
Alignment explanation
Indices: 35912716--35912956 Score: 473
Period size: 120 Copynumber: 2.0 Consensus size: 120
35912706 TAGCTAACTG
35912716 AATGGTGTAGTTAATTTATATTGTTTATAAAGTCGGTTTCAGATATGCTCGAAATAAAATCAAAT
1 AATGGTGTAGTTAATTTATATTGTTTATAAAGTCGGTTTCAGATATGCTCGAAATAAAATCAAAT
35912781 TCAAAATAAAAATAAGACCTTATTTAATTTGTTATAATTTGGTCCTATCCAAAAT
66 TCAAAATAAAAATAAGACCTTATTTAATTTGTTATAATTTGGTCCTATCCAAAAT
*
35912836 AATGGTGTAGTTAATTTATATTGTTTATAAAGTCGGTTTCAGATATGTTCGAAATAAAATCAAAT
1 AATGGTGTAGTTAATTTATATTGTTTATAAAGTCGGTTTCAGATATGCTCGAAATAAAATCAAAT
35912901 TCAAAATAAAAATAAGACCTTATTTAATTTGTTATAATTTGGTCCTATCCAAAAT
66 TCAAAATAAAAATAAGACCTTATTTAATTTGTTATAATTTGGTCCTATCCAAAAT
35912956 A
1 A
35912957 GATAGTTACC
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (120 bp):
AATGGTGTAGTTAATTTATATTGTTTATAAAGTCGGTTTCAGATATGCTCGAAATAAAATCAAAT
TCAAAATAAAAATAAGACCTTATTTAATTTGTTATAATTTGGTCCTATCCAAAAT
Found at i:35913012 original size:120 final size:120
Alignment explanation
Indices: 35912741--35912981 Score: 369
Period size: 120 Copynumber: 2.0 Consensus size: 120
35912731 TTATATTGTT
*
35912741 TATAAAGTCGGTTTCAGATATGCTCGAAATAAAATCAAATTCAAAATAAAAATAAGACCTTATTT
1 TATAAAGTCGGTTTCAGATATGTTCGAAATAAAATCAAATTCAAAATAAAAATAAGACCTTATTT
* ** ** ** *
35912806 AATTTGTTATAATTTGGTCCTATCCAAAATAATGGTGTAGTTAATTTATATTGTT
66 AATTTGTTATAATTTGGTCCTATCCAAAATAATAGTGTACCTAATCCATATAATC
35912861 TATAAAGTCGGTTTCAGATATGTTCGAAATAAAATCAAATTCAAAATAAAAATAAGACCTTATTT
1 TATAAAGTCGGTTTCAGATATGTTCGAAATAAAATCAAATTCAAAATAAAAATAAGACCTTATTT
35912926 AATTTGTTATAATTTGGTCCTATCCAAAATAGATAGT-TACCT-ATCCATATCAATC
66 AATTTGTTATAATTTGGTCCTATCCAAAATA-ATAGTGTACCTAATCCATAT-AATC
35912981 T
1 T
35912982 GTTATTTTTT
Statistics
Matches: 110, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
119 6 0.05
120 100 0.91
121 4 0.04
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (120 bp):
TATAAAGTCGGTTTCAGATATGTTCGAAATAAAATCAAATTCAAAATAAAAATAAGACCTTATTT
AATTTGTTATAATTTGGTCCTATCCAAAATAATAGTGTACCTAATCCATATAATC
Found at i:35913616 original size:154 final size:154
Alignment explanation
Indices: 35913327--35913604 Score: 360
Period size: 154 Copynumber: 1.8 Consensus size: 154
35913317 GCGGCATTTT
* * * *
35913327 TATAGCGGCGCTTTCTGAAAAACGGCGCTAATACTCAATCTTTTGCGGCGTTTTAAGGAAAGCGC
1 TATAGCGGCGCTTTCTGAAAAACGCCACTAATACTCAATCTATTGCGGCATTTTAAGGAAAGCGC
* ****
35913392 CGCTAATGCCACTAAAGCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTTTGTGGCGTATTTA
66 CGCTAATGCCACGAAAGCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTTACCAGCGTATTTA
35913457 AAAAAATGCCACTATAGGTCGACC
131 AAAAAATGCCACTATAGGTCGACC
* * * *
35913481 TATAGCGGCGCTTTCCT-AGAAACGCCACTAATGCTCGATCTATTGCGGCATTTTTAGGAAAGCG
1 TATAGCGGCGCTTT-CTGAAAAACGCCACTAATACTCAATCTATTGCGGCATTTTAAGGAAAGCG
* * ** ** *
35913545 CCGTTAATTCCACGAAAGCTTGATTTAAACGACGTCGTTTGGCTTAATCTTTTACCAGCG
65 CCGCTAATGCCACGAAAGCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTTACCAGCG
35913605 CTTTCTTAAA
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
154 101 0.98
155 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (154 bp):
TATAGCGGCGCTTTCTGAAAAACGCCACTAATACTCAATCTATTGCGGCATTTTAAGGAAAGCGC
CGCTAATGCCACGAAAGCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTTACCAGCGTATTTA
AAAAAATGCCACTATAGGTCGACC
Found at i:35913696 original size:114 final size:114
Alignment explanation
Indices: 35913488--35913712 Score: 256
Period size: 114 Copynumber: 2.0 Consensus size: 114
35913478 ACCTATAGCG
* * *
35913488 GCGCTTTCCTAGAAACGCCACTAATGCTCGATCTATTGCGGCATTTTTAGGAAAGCGCCGTTAAT
1 GCGCTTTCCTAAAAAAGCCACTAATGCTCGATCTATTGCGGCATTTTTAGGAAAGCACCGTTAAT
* ** ** * *
35913553 TCCACGAAAGCTTGATTTAAACGACGTCGTTTGGCTTAATCTTTTACCA
66 GCCACGAAAGCTCAATGCAAACGACGTCGTTCGGCTGAATCTTTTACCA
* * * * *
35913602 GCGCTTTCTTAAAAAAGCTACTAATGTTCGATTTATTGTGGCATTTTTAGGAAAGCACC-TCTAA
1 GCGCTTTCCTAAAAAAGCCACTAATGCTCGATCTATTGCGGCATTTTTAGGAAAGCACCGT-TAA
* * *
35913666 TGCTAC-ATAAGCTCAATGCAAATGATGTCGTTCGGCTGAATCTTTTA
65 TGCCACGA-AAGCTCAATGCAAACGACGTCGTTCGGCTGAATCTTTTA
35913713 GTGACATTTT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
113 2 0.02
114 89 0.98
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (114 bp):
GCGCTTTCCTAAAAAAGCCACTAATGCTCGATCTATTGCGGCATTTTTAGGAAAGCACCGTTAAT
GCCACGAAAGCTCAATGCAAACGACGTCGTTCGGCTGAATCTTTTACCA
Found at i:35915781 original size:48 final size:48
Alignment explanation
Indices: 35915710--35916027 Score: 309
Period size: 48 Copynumber: 6.6 Consensus size: 48
35915700 TATGTGTACT
*
35915710 AGTGTAAGACCATGTCTGGGACATGCCATCGGCAACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* *** * * *
35915758 AGTGTAAGACCATGTCTGGGACATGGCACCGGCGTTGA-TATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AACATTATGAGAGCC
* *
35915806 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * *** * * *
35915854 AGGGTAAGACCATGTCTAGGACATGGCATCGGCCTGAATATGCGACCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * *** * *
35915902 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTAT-ACGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGA-GAGCC
* * * **
35915950 AGTGTAAGACTATGTCTAGGACATGGCATCGAC-ACCGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* *
35915997 AGTGTAAGACCATGCCCGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
35916028 ACATTTTACC
Statistics
Matches: 216, Mismatches: 50, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
47 34 0.16
48 181 0.84
49 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
Found at i:35915973 original size:144 final size:143
Alignment explanation
Indices: 35915713--35916027 Score: 391
Period size: 144 Copynumber: 2.2 Consensus size: 143
35915703 GTGTACTAGT
* * * *
35915713 GTAAGACCATGTCTGGGACATGCCATCGGCAACATTATGAGAGCCAGTGTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGCATCGGCAACAATATGAGACCCAGTGTAAGACCATGTCTGGA
* * * *
35915778 ACATGGCACCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA
66 ACATGGCACCGGCATTGATACGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATC-GACACA
* *
35915843 TTATGAGATCCAGG
130 GTATGAGAGCCAGG
* *** * *
35915857 GTAAGACCATGTCTAGGACATGGCATCGGCCTGAATATGCGACCCAGTGTAAGACCATGTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCGGCAACAATATGAGACCCAGTGTAAGACCATGTCTGGA
* *
35915922 ACATGGCATCGGCATTGTTATACGTGT-C-AGTGTAAGACTATGTCTAGGACATGGCATCGACAC
66 ACATGGCACCGGCATTG--ATACGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACAC
* *
35915985 CGTATGAGAGCCAGT
129 AGTATGAGAGCCAGG
* *
35916000 GTAAGACCATGCCCGGGACATGGCATCG
1 GTAAGACCATGTCTGGGACATGGCATCG
35916028 ACATTTTACC
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
143 40 0.27
144 98 0.67
145 1 0.01
146 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (143 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCAACAATATGAGACCCAGTGTAAGACCATGTCTGGA
ACATGGCACCGGCATTGATACGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACACAG
TATGAGAGCCAGG
Found at i:35915978 original size:96 final size:95
Alignment explanation
Indices: 35915710--35916027 Score: 356
Period size: 96 Copynumber: 3.3 Consensus size: 95
35915700 TATGTGTACT
* *
35915710 AGTGTAAGACCATGTCTGGGACATGCCATCGGCAACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATTATGAGTGCCAGTGTAAGACCATGTCT
* * ** * * *
35915775 GGGACATGGCACCGGCGTTGATATGTGTGCT
65 AGGACATGGCATCGGCACTGATATGAGAGCC
*
35915806 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAT-CCAGGGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAG-TGCCAGTGTAAGACCATGTC
* *
35915870 TAGGACATGGCATCGGC-CTGAATATGCGACCC
64 TAGGACATGGCATCGGCACTG-ATATGAGAGCC
* * ** * *
35915902 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTAT-ACGTGTCAGTGTAAGACTATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CATTATGA-GTGCCAGTGTAAGACCATGTC
* *
35915966 TAGGACATGGCATCGACACCG-TATGAGAGCC
64 TAGGACATGGCATCGGCACTGATATGAGAGCC
* *
35915997 AGTGTAAGACCATGCCCGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
35916028 ACATTTTACC
Statistics
Matches: 190, Mismatches: 25, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
95 41 0.22
96 146 0.77
97 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGTGCCAGTGTAAGACCATGTCTA
GGACATGGCATCGGCACTGATATGAGAGCC
Found at i:35923116 original size:22 final size:23
Alignment explanation
Indices: 35923077--35923125 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
35923067 ATGCATGGCG
*
35923077 TATATATAAAAACGTATACGTA-A
1 TATATATAAAAACATATA-GTATA
*
35923100 TATA-ATAAAAATATATAGTATA
1 TATATATAAAAACATATAGTATA
35923122 TATA
1 TATA
35923126 CATGTTAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 16 0.70
23 4 0.17
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
TATATATAAAAACATATAGTATA
Found at i:35929576 original size:48 final size:48
Alignment explanation
Indices: 35929503--35929869 Score: 387
Period size: 48 Copynumber: 7.6 Consensus size: 48
35929493 GGTGGATTAT
* * * * *
35929503 CGATGCCATGTTCCAAACATGGTCTTGCACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGC
* ***
35929551 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGC
* * * * * * *
35929599 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAT-AC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTC-GTGGC
* * * *
35929647 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTC-GTGGC
* * * *
35929695 TGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATGTTGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGC
* * ***
35929743 TGATGCCATGTCCCAGACATGGTCATACACTGGCTCTCATAAGGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGC
* * * *
35929791 CGATGACATGTCCCAGACATGGTCTTACACTGGCTCTTATGTTGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGC
* *
35929839 CGATGCCATGTCCCAGCCATAGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
35929870 AGCACAGACA
Statistics
Matches: 271, Mismatches: 46, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
47 1 0.00
48 269 0.99
49 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGC
Found at i:35929897 original size:96 final size:94
Alignment explanation
Indices: 35929504--35929925 Score: 370
Period size: 96 Copynumber: 4.4 Consensus size: 94
35929494 GTGGATTATC
* * * * * * * *
35929504 GATGCCATGTTCCAAACATGGTCTTGCACTGGCTCACATGTCGAGGCCAATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGTTGTGG-CGATGCCATGTCCCAGAC
* * * *
35929569 ATGGTCTTACACTGGCTC-TCAT-AAGGTGGCC
65 ATGGTCTTACACTAGCACAACATCAA--T-GCT
* * * * * * ** **
35929600 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATACCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGT-TGTGGCGATGCCATGTCCCAGAC
35929665 ATGGTCTTACACTAGCAC-ACATGTCAATGCT
65 ATGGTCTTACACTAGCACAACA--TCAATGCT
*
35929696 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATGTTGTGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGTTGTGGC-GATGCCATGTCCCAGAC
* * * * *
35929761 ATGGTCATACACTGGCTC-TCAT-AAGGTGGCC
65 ATGGTCTTACACTAGCACAACATCAA--T-GCT
* * * *
35929792 GATGACATGTCCCAGACATGGTCTTACACTGGCTCTTATGTTGTGGTCGATGCCATGTCCCAGCC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGTTGTGG-CGATGCCATGTCCCAGAC
* *
35929857 ATAGTCTTACACTAGCACAGACATCAATGTT
65 ATGGTCTTACACTAGCACA-ACATCAATGCT
*
35929888 GATTCCATGTCCCAGA-ATGGTCTTACATTGGCTCTCAT
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCAT
35929926 ATCACCCAAA
Statistics
Matches: 269, Mismatches: 45, Indels: 25
0.79 0.13 0.07
Matches are distributed among these distances:
93 2 0.01
94 1 0.00
95 23 0.09
96 232 0.86
97 3 0.01
98 4 0.01
99 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGTTGTGGCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACAACATCAATGCT
Found at i:35930287 original size:30 final size:30
Alignment explanation
Indices: 35930248--35930304 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
35930238 AAAATCATAT
* *
35930248 TTTTGCAAAATGACCATTTTGCCCCTAGAC
1 TTTTACAAAATGACCATTTTACCCCTAGAC
* *
35930278 TTTTACAAAATTACTATTTTACCCCTA
1 TTTTACAAAATGACCATTTTACCCCTA
35930305 TGCTCGTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTACAAAATGACCATTTTACCCCTAGAC
Found at i:35946597 original size:48 final size:48
Alignment explanation
Indices: 35946478--35946797 Score: 342
Period size: 48 Copynumber: 6.6 Consensus size: 48
35946468 AGTGAATTCT
** * ** *
35946478 CGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTTGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
* * *
35946526 CAAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGC
1 C-GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
* * *
35946575 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACATATATCAATGT---
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-T-CAT-AATGTGGC
* ** *
35946623 CGATGCCATGTCCCAAACATGAG-CTTACACTAGCTCTCATGTTGTAGC
1 CGATGCCATGTCCCAAACATG-GTCTTACACTGGCTCTCATAATGTGGC
* * *
35946671 CAATGCCATGTCCCAAACATGGTCTTACACTGGCTGTCATAAGGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
* * **
35946719 CGATGCCATATCCCAAACATGGTCTTACATTGGCTCTCATGTTGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
* *
35946767 CAATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
35946798 AGCACACACA
Statistics
Matches: 226, Mismatches: 37, Indels: 18
0.80 0.13 0.06
Matches are distributed among these distances:
45 3 0.01
46 2 0.01
47 2 0.01
48 172 0.76
49 41 0.18
50 2 0.01
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
Found at i:35946659 original size:96 final size:96
Alignment explanation
Indices: 35946529--35946856 Score: 380
Period size: 96 Copynumber: 3.4 Consensus size: 96
35946519 TTGAGGCCAA
* ** *
35946529 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCAATGCCATGTCCCAAACA
35946594 TGGTCTTACACTAGCACATATATCAATGTCG
66 TGGTCTTACACTAGCACATATATCAATGTCG
* * *
35946625 ATGCCATGTCCCAAACATGAG-CTTACACTAGCTCTCATGTTGTAGCCAATGCCATGTCCCAAAC
1 ATGCCATGTCCCAAACATG-GTCTTACACTGGCTCTCATATTGTGGCCAATGCCATGTCCCAAAC
* * *
35946689 ATGGTCTTACACT-G-GC-TGTCAT-AAGGTGGCCG
65 ATGGTCTTACACTAGCACATAT-ATCAA--T-GTCG
* * * *
35946721 ATGCCATATCCCAAACATGGTCTTACATTGGCTCTCATGTTGTGGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCAATGCCATGTCCCAAACA
* * *
35946786 TGGTCTTACACTAGCACACACATCACT-TCTG
66 TGGTCTTACACTAGCACATATATCAATGTC-G
* * *
35946817 ATGCCATGTCCCAGATATGGTCTTACACTTGCTCTCATAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT
35946857 CACCCAAATG
Statistics
Matches: 194, Mismatches: 27, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
93 4 0.02
94 3 0.02
95 4 0.02
96 176 0.91
97 3 0.02
98 3 0.02
99 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCAATGCCATGTCCCAAACA
TGGTCTTACACTAGCACATATATCAATGTCG
Found at i:35946738 original size:144 final size:145
Alignment explanation
Indices: 35946477--35946747 Score: 440
Period size: 144 Copynumber: 1.9 Consensus size: 145
35946467 GAGTGAATTC
** *
35946477 TCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTTGAGGCCAAATGCCATGTCCCA
1 TCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTTGAGGCCAAATGCCATGTCCCA
* *
35946542 GACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATGTCCCAAACATGGTCTTACACTA
66 AACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACACTA
35946607 GCACATATATCAATG
131 GCACATATATCAATG
*
35946622 TCGATGCCATGTCCCAAACATGAG-CTTACACTAGCTCTCATGTTGTA-GCC-AATGCCATGTCC
1 TCGATGCCATGTCCCAAACATG-GTCTTACACTAGCTCACATGTTG-AGGCCAAATGCCATGTCC
*
35946684 CAAACATGGTCTTACACTGGCTGTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACA
64 CAAACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACA
35946748 TTGGCTCTCA
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
144 73 0.62
145 42 0.36
146 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (145 bp):
TCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTTGAGGCCAAATGCCATGTCCCA
AACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACACTA
GCACATATATCAATG
Found at i:35946773 original size:144 final size:145
Alignment explanation
Indices: 35946480--35946805 Score: 428
Period size: 144 Copynumber: 2.3 Consensus size: 145
35946470 TGAATTCTCG
** * *
35946480 ATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTTGAGGCCAAATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTTGAGGCCAAATGCCATGTCCCAAAC
*
35946545 ATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
66 ATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACACTAGCA
* *
35946610 CATATATCAATGTCG
131 CATATATCAATGCCA
*
35946625 ATGCCATGTCCCAAACATGAG-CTTACACTAGCTCTCATGTTGTA-GCC-AATGCCATGTCCCAA
1 ATGCCATGTCCCAAACATG-GTCTTACACTAGCTCACATGTTG-AGGCCAAATGCCATGTCCCAA
* * *
35946687 ACATGGTCTTACACTGGCTGTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACATTGG
64 ACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACACTAG
* * **
35946752 CTC-TCATGT-TGTGGCCA
129 CACAT-ATATCAAT-GCCA
* *
35946769 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
35946806 CATCACTTCT
Statistics
Matches: 158, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
143 3 0.02
144 114 0.72
145 39 0.25
146 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (145 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTTGAGGCCAAATGCCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAACATGGTCTTACACTAGCA
CATATATCAATGCCA
Found at i:35946821 original size:144 final size:144
Alignment explanation
Indices: 35946528--35946855 Score: 385
Period size: 144 Copynumber: 2.3 Consensus size: 144
35946518 GTTGAGGCCA
*
35946528 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATGTCCCAAAC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAAC
* * *
35946593 ATGGTCTTACACTAGCACATATATCAATGTCGATGCCATGTCCCAAACATGAGCTTACACTAGCT
66 ATGGTCTTACACTAGCACATATATCAATGCCAATGCCATGTCCCAAACATGAGCTTACACTAGCA
* ** **
35946658 CTCATGTTGTAGCC
131 CACACATACTAGCC
* *
35946672 AATGCCATGTCCCAAACATGGTCTTACACTGGCTGTCATAAGGTGGCCGATGCCATATCCCAAAC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAAC
* * * * ** *
35946737 ATGGTCTTACATTGGCTC-TCATGT-TGTGGCCAATGCCATGTCCCAGACATG-GTCTTACACTA
66 ATGGTCTTACACTAGCACAT-ATATCAAT-GCCAATGCCATGTCCCAAACATGAG-CTTACACTA
* *
35946799 GCACACACATCACT-TCT
128 GCACACACAT-ACTAGCC
* * *
35946816 GATGCCATGTCCCAGATATGGTCTTACACTTGCTCTCATA
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA
35946856 TCACCCAAAT
Statistics
Matches: 155, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
143 3 0.02
144 151 0.97
145 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (144 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATATCCCAAAC
ATGGTCTTACACTAGCACATATATCAATGCCAATGCCATGTCCCAAACATGAGCTTACACTAGCA
CACACATACTAGCC
Found at i:35946859 original size:48 final size:48
Alignment explanation
Indices: 35946478--35946856 Score: 338
Period size: 48 Copynumber: 7.9 Consensus size: 48
35946468 AGTGAATTCT
** * * * * *
35946478 CGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTTGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAGTGGC
* * *
35946526 CAAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AGGTGGC
1 C-GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATA-GTGGC
* * *
35946575 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACAT-ATATCAAT-GT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCATAT-AGTGGC
* * *
35946623 CGATGCCATGTCCCAAACATGAG-CTTACACTAGCTCTCATGTTGTAGC
1 CGATGCCATGTCCCAAACATG-GTCTTACACTAGCTCTCATATAGTGGC
* * *
35946671 CAATGCCATGTCCCAAACATGGTCTTACACTGGCTGTCATA-AGGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATA-GTGGC
* * * * *
35946719 CGATGCCATATCCCAAACATGGTCTTACATTGGCTCTCATGTTGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAGTGGC
* * * * * * *
35946767 CAATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCACT-TC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-AGTGGC
* * * *
35946815 TGATGCCATGTCCCAGATATGGTCTTACACTTGCTCTCATAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
35946857 CACCCAAATG
Statistics
Matches: 269, Mismatches: 50, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
47 3 0.01
48 222 0.83
49 43 0.16
50 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAGTGGC
Found at i:35949048 original size:11 final size:11
Alignment explanation
Indices: 35949032--35949056 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
35949022 CGATTGATCG
35949032 TAGTAGTTCCA
1 TAGTAGTTCCA
35949043 TAGTAGTTCCA
1 TAGTAGTTCCA
35949054 TAG
1 TAG
35949057 GCTATTGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (11 bp):
TAGTAGTTCCA
Found at i:35950329 original size:33 final size:34
Alignment explanation
Indices: 35950287--35950355 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 34
35950277 CATTATAGTG
*
35950287 TCCCAACTTTCATCTTG-CATTTTCTCATTTCTT
1 TCCCAACTTTCATCTTGCCATTTTATCATTTCTT
*
35950320 TCCCAACTTTCATCTTGCCTTTTTATCATTTCTT
1 TCCCAACTTTCATCTTGCCATTTTATCATTTCTT
35950354 TC
1 TC
35950356 TCTCTAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
33 17 0.52
34 16 0.48
ACGTcount: A:0.14, C:0.30, G:0.03, T:0.52
Consensus pattern (34 bp):
TCCCAACTTTCATCTTGCCATTTTATCATTTCTT
Found at i:35958085 original size:63 final size:64
Alignment explanation
Indices: 35958005--35958185 Score: 199
Period size: 66 Copynumber: 2.8 Consensus size: 64
35957995 AGACATTATG
* *
35958005 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
35958068 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
35958133 AA
63 AA
* * *
35958135 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGA
35958186 CCGAACTATA
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 41 0.42
64 1 0.01
65 2 0.02
66 45 0.46
67 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:35965057 original size:707 final size:706
Alignment explanation
Indices: 35963701--35967395 Score: 5147
Period size: 707 Copynumber: 5.2 Consensus size: 706
35963691 TCATGGGTTG
* * * * ** *
35963701 GATAGTTATGCTCCTGAAGCTTAAGATGTCTCGAGGTGTAGGCTGCAACCTTACTATCTTGTATC
1 GATAGTTACGCTCCTGAGGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAATC
* * * * * *
35963766 AAAACACAA-CTAAGATCATTATAAGATGCATCACTATACACCACATAATCCTTCTCGGACCTTA
66 AAAACACAACCT-AGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTG
* * * * * *
35963830 GCTAAATCAGAAAAGGTGCTTGAGTCAACACGGGCTAAAGCTTTTCAAACTCTCTTGCTACAT-T
130 GCTAAATAAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGC-TCT
* *
35963894 ACAGTCCACTTGAAAGGTACACTTTTCCTCAAC-AGCTTGGTCATTAGAGTTGCAATCAAAGAAA
194 ACAGTCCACTTGAAAGGTGCACTTTTCCTCAACTA-CTTGGTCATTGGAGTTGCAATCAAAGAAA
* * * **
35963958 ACCGTTCCAAAACAT-T-CTATAACAGCCGATTAGTCCTAATAAAATTTAGATTTCACTAAGATT
258 ACTGTTCCAAAA-ATATCCTACAATAGCCGACCAGTCCTAATAAAATTTAGATTTCACTAAGATT
* * ** ** ***
35964021 CTTAGGTTTCTTCAAGTCTAAGATAGACTCAATATTCTTTACGTTGACACGATACTATCAGCCAA
322 CTTAGGTTTCTTC-AGTCCAAGATAGACTCAATATTCTTTAGGCAGACACGATACCCTCAGTTGA
* *
35964086 TACCACGTGTCCTAGAAACATCACTTTGTGGAACCAGAACCCACACTTACTTAG-TTGGCATATA
386 TACCACGTGTCCTAGAAACATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTGGCATATA
*
35964150 ACTATTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTC-TCTAGACAT
451 ACTGTTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTCTTC-AGACAT
* * * * *
35964214 GGAATACATTAAGATGTTGCTAATGAAGACCACAACAAATTGATCAAGGTATGGCTGAAATACCA
515 GGAATAGATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGCTGAAATACCT
* * * *
35964279 GATTCATTAGGTCCATAAAGCCCACCGGAGCATTCGTAAGACCAAAGGGCATCACAAGAAACTCG
580 GATTCATTAGGTCCATAAAGCCCACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCA
* * *
35964344 TAGTGACCATACCAAGTCCTAAAAGCTATCTTAGGAATGTCCATCTCTTTCACTTTCAAACT
645 TAGTGACCATACCGAGTCCTGAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAACT
* * *
35964406 -ATAGTTACGCTCTTGAGGCTTAAGCTGTCCCGAGATGTAGGCCGCAACCTTACCGTCTTGAATC
1 GATAGTTACGCTCCTGAGGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAATC
* * *
35964470 AAAACACAACCTAGACCGTTATGAGATGGATCACTATACACAACATAATCCTTCTCGGACCCTAG
66 AAAACACAACCTAGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTGG
* * * *
35964535 CTTAATAAGAACAGGTGCTTGAGTCAACACAGAATTAAGCTTTTCAAACTCTCTTGCTGCTCTAT
131 CTAAATAAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGCTCTAC
* * *
35964600 AGTCTACTTGAAAGGTGCACTTTTCCTCAACTTCTTGGACATTGGAGTTGCAATCAAAGAAAACT
196 AGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCATTGGAGTTGCAATCAAAGAAAACT
* *
35964665 GTTCCAAAAATATCCTACAATAGTCGACCAATCCTAATAAAATTTAGATTTCACTAAGATTCTTA
261 GTTCCAAAAATATCCTACAATAGCCGACCAGTCCTAATAAAATTTAGATTTCACTAAGATTCTTA
* * *
35964730 GGTTTCTTACAGTCCAAGATAGACTCAATTTTCTTTAGGTAGACAAGAATACCCTCAGTTGATAC
326 GGTTTCTT-CAGTCCAAGATAGACTCAATATTCTTTAGGCAGACACG-ATACCCTCAGTTGATAC
* * *
35964795 CACGTGACCTAGAAGCATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTAGCATATAACT
389 CACGTGTCCTAGAAACATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTGGCATATAACT
* * *
35964860 GTTTCTCTTAGAGAATCTTCAAAACCACTCTCAAATGTTCATCATGTTCTTCTTCAAACATGGAA
454 GTTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTCTTCAGACATGGAA
* *
35964925 TAGATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGTTGAAATACCTAATT
519 TAGATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGCTGAAATACCTGATT
* *
35964990 CATTAGGTCCATAAAGGCTACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCATAGT
584 CATTAGGTCCATAAAGCCCACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCATAGT
* * **
35965055 GACTATACCGAGTCCTGAAAGTTATCTTAGGAACAACCATCTCTTTCACTTTC-AACT
649 GACCATACCGAGTCCTGAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAACT
* ** * *
35965112 GATAGTTACGCTCCT-ACGGCTTAAGCTGTCTCAAGGCATAAGCCGCAACCTTACCGTCTTGTAT
1 GATAGTTACGCTCCTGA-GGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAAT
* * *
35965176 TAAAACACAACCTAGAACGTTATGGGATGCATCACTATACACTACATAATCCTTCTCGGACCCTG
65 CAAAACACAACCTAGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTG
* ** *
35965241 GCTGAATCAA-AATAGGTGCTTGAGTCAACATGGACTTAAGCTTTTCAAACTCTCTTACTGCTCT
130 GCTAAAT-AAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGCTCT
*
35965305 ACAGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCGTTGGAGTTGCAATCAAAGAAAA
194 ACAGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCATTGGAGTTGCAATCAAAGAAAA
* * *
35965370 CTATTCCAAAAATATCCTACAATAGCCGACCATTTCTAATAAAATTTAGATTTCACTAAGATTCT
259 CTGTTCCAAAAATATCCTACAATAGCCGACCAGTCCTAATAAAATTTAGATTTCACTAAGATTCT
* * ** * * ** **
35965435 TAGATTTCTTCAAGTCTAAGATAGACTCAATATTCTTTCCGCCGACATGATACTGTCA-TCCAAT
324 TAGGTTTCTTC-AGTCCAAGATAGACTCAATATTCTTTAGGCAGACACGATACCCTCAGT-TGAT
* * *
35965499 ACCACATGTCCTAGAAACATCACCTTATGGAACCAGAACCCACACTTACTTAGTTTGGCATATAA
387 ACCACGTGTCCTAGAAACATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTGGCATATAA
* * *
35965564 CTGTTTCTCTCAGGGAATCTTCAAAACCACTCTTATATGTTCATCATGTTCTTCTCCAGACATGG
452 CTGTTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTCTTCAGACATGG
* *
35965629 AATAGATTAAGATGTTGTTAATGAAGACCACAACAAATTGATCAAGGTATGGCTGAAATACCTGA
517 AATAGATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGCTGAAATACCTGA
* * * * *
35965694 TTCATTAGGTCCAAAAAGCCCACCGGAGTATTCGTAAGACC-AAGGGCATCACAAGGAACTCGTA
582 TTCATTAGGTCCATAAAGCCCACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCATA
* *
35965758 GAGACCATACCGAGTCCTGAAAGCTATCTTAGGAATGTCCATCTCTTTCACTTTCAAA-T
647 GTGACCATACCGAGTCCTGAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAACT
* * *
35965817 GATAGTTACGCTCTTGAGGCTTAAGCTGTCCCGAGGTGTAGGCCGCAACCTTATCGTCTTGAATC
1 GATAGTTACGCTCCTGAGGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAATC
* * * *
35965882 AAAACACAGCCTAGACTGTTATGAGATGGATCACTATACACTACATAATCCTTCTCGAACCCTGG
66 AAAACACAACCTAGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTGG
* * * * *
35965947 CTGAATTAGAACAGGTGCTTGAGTCAACACGGACTTAAGCTTTTCAAACTCTCTTACTGCTCTAC
131 CTAAATAAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGCTCTAC
* * *
35966012 AGTCTACTTGAAAGGTGCACTTTTCCTCAACTTCTTGGACATTGGAGTTGCAATCAAAGAAAACT
196 AGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCATTGGAGTTGCAATCAAAGAAAACT
* *
35966077 GTTCCAAAAATATCCTACAACAGCCGACCAGTCTTAATAAAATTTAGATTTCACTAAGATTCTTA
261 GTTCCAAAAATATCCTACAATAGCCGACCAGTCCTAATAAAATTTAGATTTCACTAAGATTCTTA
* * *
35966142 GGTTTCTTCCAGTCCAAGATAGACTCAATATTCTTTGGGCATACACGAATACCCTTAGTTGATAC
326 GGTTTCTT-CAGTCCAAGATAGACTCAATATTCTTTAGGCAGACACG-ATACCCTCAGTTGATAC
* * *
35966207 CACGTGACCTAGAAACATCACCTTGTGGAACCAGAACTCACATTTACTTAGTTTGGCATATAACA
389 CACGTGTCCTAGAAACATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTGGCATATAACT
* * *
35966272 GTTTCTCTTAGAGAATCTTCAAAACCACTCTCAAATGTTCATCACGTTCTTCTTCAGACATGGAA
454 GTTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTCTTCAGACATGGAA
* * * * * *
35966337 TACATCAAGATGTTGTTAATGATGACCACAACAAACTTATGAAGGTAGGGCTAAAATACCTGATT
519 TAGATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGCTGAAATACCTGATT
* * * * *
35966402 CATTAGGTCCATAAAGGCTACCAGACCATTCGTGAGACCAAAGGGTATTACAAGGAACTCATAGT
584 CATTAGGTCCATAAAGCCCACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCATAGT
* * *
35966467 GACCATACAGAGTCCTGAAAGTTATCTTAAGAACGTCCATCTCTTTCACTTTC-AACT
649 GACCATACCGAGTCCTGAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAACT
** * * * *
35966524 GATAGTTATACTCCTAAGGCTTAAGCTATCTCGAGGCGTAGGCCGCAACCTTACCGTCTTGCATC
1 GATAGTTACGCTCCTGAGGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAATC
* * * *
35966589 AAAATACAACCTAGAACGTTATGAGATGCATCACTACACACTACATAATCCTTCTCAGACCCTGG
66 AAAACACAACCTAGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTGG
* *
35966654 CTAAATCAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGCTCTAA
131 CTAAATAAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGCTCTAC
35966719 AGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCATTGGAGTTGCAATCAAAGAAAACT
196 AGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCATTGGAGTTGCAATCAAAGAAAACT
* ** *
35966784 ATTCCAAAAATATCCTACAATAGCCGACCAGTTATAATAAAACTTAGATTTCACTAAGATTCTTA
261 GTTCCAAAAATATCCTACAATAGCCGACCAGTCCTAATAAAATTTAGATTTCACTAAGATTCTTA
* * *
35966849 GGTTCCTTCCAGTCCAAGATAGACTCAATATTCTTTGGGCCA-ACACGGATACCCTCAGCTGATA
326 GGTTTCTT-CAGTCCAAGATAGACTCAATATTCTTTAGG-CAGACAC-GATACCCTCAGTTGATA
* * *
35966913 CCACGTGTCCCAGAAACATCACCTTGTGGAACTAGAACTCACACTTACTTAGTTTGACATATAAC
388 CCACGTGTCCTAGAAACATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTGGCATATAAC
** *
35966978 TGTTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGCACTTCTTCAGACTTGGA
453 TGTTTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTCTTCAGACATGGA
* * * *
35967043 ATAGATCAAGATGTTGTTAATGTAGACCACAACAAACTAATCAAGGTAGGGCTAAAATACCTGAT
518 ATAGATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGCTGAAATACCTGAT
** * * * * *
35967108 TCATTAGGTCCATAAATACCACCAGAGCATTCGTGAGACTAAAGGGTATTACAAGGAACTTATAA
583 TCATTAGGTCCATAAAGCCCACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCATAG
*
35967173 TGACCATACCGAGTCCTAAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAA-T
648 TGACCATACCGAGTCCTGAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAACT
* * * * * * * *
35967231 GATAGTTACACTCCTAAGGCTTAAGCTATCTCAAGGAGTAGGACGCAACCTTACCATCTTGCATC
1 GATAGTTACGCTCCTGAGGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAATC
* * * * * **
35967296 AAAACACAACCAAGACCATTATGAGATGCATCATTATACACCATATAATCCTTCTCATACCCTGG
66 AAAACACAACCTAGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTGG
* * * *
35967361 TTGAATTAGAATAGGTGCTTGAGTCTACACAGACT
131 CTAAATAAGAATAGGTGCTTGAGTCAACACAGACT
35967396 GTAACACCCC
Statistics
Matches: 2665, Mismatches: 300, Indels: 48
0.88 0.10 0.02
Matches are distributed among these distances:
703 3 0.00
704 233 0.09
705 491 0.18
706 513 0.19
707 1416 0.53
708 9 0.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (706 bp):
GATAGTTACGCTCCTGAGGCTTAAGCTGTCTCGAGGTGTAGGCCGCAACCTTACCGTCTTGAATC
AAAACACAACCTAGACCGTTATGAGATGCATCACTATACACTACATAATCCTTCTCGGACCCTGG
CTAAATAAGAATAGGTGCTTGAGTCAACACAGACTTAAGCTTTTCAAACTCTCTTGCTGCTCTAC
AGTCCACTTGAAAGGTGCACTTTTCCTCAACTACTTGGTCATTGGAGTTGCAATCAAAGAAAACT
GTTCCAAAAATATCCTACAATAGCCGACCAGTCCTAATAAAATTTAGATTTCACTAAGATTCTTA
GGTTTCTTCAGTCCAAGATAGACTCAATATTCTTTAGGCAGACACGATACCCTCAGTTGATACCA
CGTGTCCTAGAAACATCACCTTGTGGAACCAGAACTCACACTTACTTAGTTTGGCATATAACTGT
TTCTCTCAGAGAATCTTCAAAACCACTCTCATATGTTCATCATGTTCTTCTTCAGACATGGAATA
GATTAAGATGTTGTTAATGAAGACCACAACAAACTGATCAAGGTAGGGCTGAAATACCTGATTCA
TTAGGTCCATAAAGCCCACCGGAGCATTCGTGAGACCAAAGGGCATTACAAGGAACTCATAGTGA
CCATACCGAGTCCTGAAAGCTATCTTAGGAACGTCCATCTCTTTCACTTTCAAACT
Found at i:35969041 original size:43 final size:44
Alignment explanation
Indices: 35968976--35969141 Score: 191
Period size: 43 Copynumber: 3.9 Consensus size: 44
35968966 AGCTCGTACA
* * *
35968976 ATGCC-ATATCCCAGATATGGTCTTACATGTAAAT-AC-ATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCACAATA-CG
* *
35969018 ATGCCACTGTCCCAGACAAGGTCTTACATG-AAATCACAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCACAATACG
* * * *
35969061 ATGCCAATGTCCAAGACATGGTCTTACACGT-AATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCACAATACG
*
35969104 ATGCCAATGTCCCATACATGGTCTTACATGT-AATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCACA
35969142 TCTCGATAAC
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
42 9 0.09
43 93 0.89
44 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCACAATACG
Found at i:35977006 original size:42 final size:40
Alignment explanation
Indices: 35976957--35977081 Score: 151
Period size: 42 Copynumber: 3.0 Consensus size: 40
35976947 TTCATTTTCT
* * * *
35976957 TGATGCCATAGTTCAACTATGGTCTTGCACATCTTCACATAA
1 TGATGCCATAGCTCAGCTATGGTCTTACACAT-ATCACAT-A
* *
35976999 TGATGCCATAGCCCAGCTATGGTCTTACACATATCATATA
1 TGATGCCATAGCTCAGCTATGGTCTTACACATATCACATA
*
35977039 TCGATGCCATAGCTCAGCTATGGTCTTACACGTAATCACATA
1 T-GATGCCATAGCTCAGCTATGGTCTTACACAT-ATCACATA
35977081 T
1 T
35977082 CACATATTGA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
40 2 0.03
41 34 0.47
42 36 0.50
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (40 bp):
TGATGCCATAGCTCAGCTATGGTCTTACACATATCACATA
Found at i:35977057 original size:41 final size:42
Alignment explanation
Indices: 35976957--35977118 Score: 157
Period size: 41 Copynumber: 3.7 Consensus size: 42
35976947 TTCATTTTCT
* * * *
35976957 TGATGCCATAGTTCAACTATGGTCTTGCACATCTTCACATAA
1 TGATGCCATAGCTCAGCTATGGTCTTACACATCATCACATAA
* *
35976999 TGATGCCATAGCCCAGCTATGGTCTTACACAT-ATCATAT-A
1 TGATGCCATAGCTCAGCTATGGTCTTACACATCATCACATAA
*
35977039 TCGATGCCATAGCTCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 T-GATGCCATAGCTCAGCTATGGTCTTACAC---AT--C--ATCACATAA
* *
35977089 TGATGCCATAGCCCAGCTATGGTCGTACAC
1 TGATGCCATAGCTCAGCTATGGTCTTACAC
35977119 GAATCACATA
Statistics
Matches: 99, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
40 2 0.02
41 33 0.33
42 28 0.28
44 2 0.02
49 33 0.33
50 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
TGATGCCATAGCTCAGCTATGGTCTTACACATCATCACATAA
Found at i:35977098 original size:49 final size:48
Alignment explanation
Indices: 35977026--35977161 Score: 177
Period size: 49 Copynumber: 2.9 Consensus size: 48
35977016 TATGGTCTTA
* * *
35977026 CACATATCATATATCGATGCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
35977075 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
35977123 CACATATCTC--ACTGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTA
35977162 TACAGTAGCA
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
46 25 0.32
48 12 0.15
49 41 0.53
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:35977265 original size:31 final size:31
Alignment explanation
Indices: 35977230--35977378 Score: 199
Period size: 31 Copynumber: 4.8 Consensus size: 31
35977220 CTTGTCACTT
* * *
35977230 GTAGCCGAAGCTACCACTATTCACTCATCTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
35977261 GTAGCTGGAGCTGCCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
35977292 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
35977323 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
35977354 GTAGCCGAAGCTACCATTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
35977379 TGTCATTTGT
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:35977453 original size:50 final size:51
Alignment explanation
Indices: 35977355--35977480 Score: 182
Period size: 50 Copynumber: 2.5 Consensus size: 51
35977345 ACTGATCAGG
* * * *
35977355 TAGCCGAAGCTACCATTTTTCACTTGTCATTTGTCCTTGATCAGATAAGTA
1 TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
* *
35977406 TAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGTG
1 TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
*
35977456 TAGCTGAAGCTATCACTTATCACTT
1 TAGCCGAAGCTATCACTTATCACTT
35977481 CTTGCCATGG
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
50 46 0.68
51 22 0.32
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (51 bp):
TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
Found at i:35979454 original size:42 final size:42
Alignment explanation
Indices: 35979408--35979512 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
35979398 CAACTATAGG
* *
35979408 CTTACACATCTTCACATATTAATGCCATAGCCCAGCTATGGT
1 CTTACACATATTCACATATCAATGCCATAGCCCAGCTATGGT
* * *
35979450 CTTACACATATTCATATATCGATGCCATAGCTCAGCTATGGT
1 CTTACACATATTCACATATCAATGCCATAGCCCAGCTATGGT
* *
35979492 CTTACACGTAATCACATATCA
1 CTTACACATATTCACATATCA
35979513 CATATTGATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (42 bp):
CTTACACATATTCACATATCAATGCCATAGCCCAGCTATGGT
Found at i:35979529 original size:49 final size:48
Alignment explanation
Indices: 35979454--35979559 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
35979444 TATGGTCTTA
* * * * *
35979454 CACATATTCATATATCGATGCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATACCATAGCCCAGCTAAGGTCGTACACG-AAT
*
35979504 CACATATCACATATTGATACCATAGCCCAGCTAAGGTCGTACACGAAT
1 CACATATCACATATCGATACCATAGCCCAGCTAAGGTCGTACACGAAT
35979552 CACATATC
1 CACATATC
35979560 TCACTGATGC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
48 11 0.22
49 33 0.66
50 6 0.12
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (48 bp):
CACATATCACATATCGATACCATAGCCCAGCTAAGGTCGTACACGAAT
Found at i:35979694 original size:31 final size:31
Alignment explanation
Indices: 35979659--35979805 Score: 219
Period size: 31 Copynumber: 4.8 Consensus size: 31
35979649 CTTGTCACTT
* *
35979659 GTAGCCGAAGCTACCACTATTCACTGATCTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
35979690 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
35979721 GTAAG--G-AGCTACCACTTTTCACTGATCAG
1 GT-AGCCGAAGCTACCACTTTTCACTGATCAG
*
35979750 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
35979781 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
35979806 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
28 2 0.02
29 24 0.23
30 2 0.02
31 76 0.72
32 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:35979743 original size:60 final size:61
Alignment explanation
Indices: 35979659--35979805 Score: 208
Period size: 60 Copynumber: 2.4 Consensus size: 61
35979649 CTTGTCACTT
* * * * *
35979659 GTAGCCGAAGCTACCACTATTCACTGATCTGGTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAG-CGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
35979721 GTAAG-G-AGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GT-AGCGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
35979781 GTAGCCGAAGCTACCACTTTTCACT
1 GTAG-CGAAGCTACCACTTTTCACT
35979806 TGTCATTTGT
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
59 2 0.03
60 51 0.67
61 2 0.03
62 19 0.25
63 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (61 bp):
GTAGCGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:35979892 original size:50 final size:51
Alignment explanation
Indices: 35979781--35979907 Score: 193
Period size: 50 Copynumber: 2.5 Consensus size: 51
35979771 CACTGATCAG
* * *
35979781 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
35979832 ATAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
*
35979882 GTAGCTGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
35979908 CTTGCCATGG
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:35981878 original size:42 final size:42
Alignment explanation
Indices: 35981827--35981973 Score: 159
Period size: 42 Copynumber: 3.3 Consensus size: 42
35981817 CATAGTTTAA
* *
35981827 CTATAGTCTTACACATCTTCACATATTGATACCATAGCCCAG
1 CTATGGTCTTACACATCTTCACATATTGATGCCATAGCCCAG
* * * *
35981869 CTATGGTCTTACACATATTCATATATCGATGCCATAGCTCAG
1 CTATGGTCTTACACATCTTCACATATTGATGCCATAGCCCAG
*
35981911 CTATGGTCTTACATGTAATCACATATCACATATTGATGCCATAGCCCAG
1 CTATGGTCTTACA---CAT--C-T-TCACATATTGATGCCATAGCCCAG
*
35981960 CTATGGTCGTACAC
1 CTATGGTCTTACAC
35981974 GAATCACATA
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 49 0.58
45 2 0.02
48 1 0.01
49 33 0.39
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
CTATGGTCTTACACATCTTCACATATTGATGCCATAGCCCAG
Found at i:35981953 original size:49 final size:48
Alignment explanation
Indices: 35981880--35982016 Score: 161
Period size: 49 Copynumber: 2.9 Consensus size: 48
35981870 TATGGTCTTA
* * * *
35981880 CACATATTCATATATCGATGCCATAGCTCAGCTATGGTCTTACATGTAAT
1 CACATA-TCACATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
35981930 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
35981978 CACATATCTC--ACTGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTA
35982017 TACAGTAGCA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 25 0.32
48 12 0.16
49 34 0.44
50 6 0.08
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (48 bp):
CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:35982045 original size:47 final size:46
Alignment explanation
Indices: 35981895--35982067 Score: 148
Period size: 47 Copynumber: 3.7 Consensus size: 46
35981885 ATTCATATAT
* * * * * * *
35981895 CGATGCCATAGCTCAGCTATGGTCTTACATGTAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTATACG-AAGCACATATCAC--AC
* * * * * * *
35981944 TGATGCCATAGCCCAGCTATGGTCGTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
35981990 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
35982037 CGATGCCATATCCCAAATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
35982068 GAAATCACTT
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
46 28 0.26
47 40 0.37
48 12 0.11
49 27 0.25
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:35982120 original size:31 final size:31
Alignment explanation
Indices: 35982085--35982233 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
35982075 CTTGTCACTT
* *
35982085 GTAGCCGAAGCTACCACTATTCACTGATCTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
35982116 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
35982147 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
35982178 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
35982209 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
35982234 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Done.