Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 133 of 345
Found at i:35982320 original size:50 final size:51
Alignment explanation
Indices: 35982209--35982335 Score: 193
Period size: 50 Copynumber: 2.5 Consensus size: 51
35982199 CACTGATCAG
* * *
35982209 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
35982260 ATAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
*
35982310 GTAGCTGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
35982336 CTTGCCATGG
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:35983939 original size:40 final size:40
Alignment explanation
Indices: 35983894--35984023 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
35983884 CGGAATACAA
35983894 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
35983934 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
35983974 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
35984014 CCGGATATAA
1 CCGGATATAA
35984024 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:35984038 original size:40 final size:40
Alignment explanation
Indices: 35983894--35984057 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
35983884 CGGAATACAA
* **
35983894 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
35983934 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
35983974 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
35984014 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
35984054 CCGG
1 CCGG
35984058 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:35991992 original size:40 final size:40
Alignment explanation
Indices: 35991947--35992076 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
35991937 CGGAATACAA
35991947 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
35991987 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
35992027 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
35992067 CCGGATATAA
1 CCGGATATAA
35992077 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:35992091 original size:40 final size:40
Alignment explanation
Indices: 35991947--35992114 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
35991937 CGGAATACAA
* **
35991947 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
35991987 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
35992027 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
35992067 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
35992107 CCGGATAT
1 CCGGATAT
35992115 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:35994678 original size:40 final size:40
Alignment explanation
Indices: 35994633--35994800 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
35994623 CGGAATATAA
35994633 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
35994673 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
35994713 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
35994753 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
35994793 CCGGATAT
1 CCGGATAT
35994801 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:35994783 original size:80 final size:80
Alignment explanation
Indices: 35994649--35994798 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
35994639 ATAATCACGT
*
35994649 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
35994713 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
35994729 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
35994792 CCCGGAT
64 CCCGGAT
35994799 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:35998834 original size:42 final size:42
Alignment explanation
Indices: 35998788--35998926 Score: 170
Period size: 42 Copynumber: 3.1 Consensus size: 42
35998778 AACTATATTA
35998788 TTACACATCTTCACATATTGATGCCATAGCCCAGCTATGGTC
1 TTACACATCTTCACATATTGATGCCATAGCCCAGCTATGGTC
* * * *
35998830 TTACACATATTCATATATCGATGCCATAGCTCAGCTATGGTC
1 TTACACATCTTCACATATTGATGCCATAGCCCAGCTATGGTC
35998872 TTACACGTAATCACATATCACATATTGATGCCATAGCCCAGCTATGGTC
1 TTACAC---AT--C-T-TCACATATTGATGCCATAGCCCAGCTATGGTC
*
35998921 GTACAC
1 TTACAC
35998927 GAATCACATA
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
42 44 0.54
45 2 0.02
48 1 0.01
49 34 0.42
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TTACACATCTTCACATATTGATGCCATAGCCCAGCTATGGTC
Found at i:35998906 original size:49 final size:48
Alignment explanation
Indices: 35998833--35998969 Score: 170
Period size: 49 Copynumber: 2.9 Consensus size: 48
35998823 TATGGTCTTA
* * *
35998833 CACATATTCATATATCGATGCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
35998883 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
35998931 CACATATCTC--ACTGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTA
35998970 TACAGTAGCA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 25 0.32
48 12 0.15
49 35 0.45
50 6 0.08
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:35998998 original size:47 final size:46
Alignment explanation
Indices: 35998849--35999020 Score: 164
Period size: 47 Copynumber: 3.7 Consensus size: 46
35998839 TTCATATATC
* * * * * *
35998849 GATGCCATAGCTCAGCTATGGTCTTACACGTAATCACATATCACATATT
1 GATGCCATATCCCAGATATGGTCTTATACG-AAGCACATATCAC--ACT
* * * * * *
35998898 GATGCCATAGCCCAGCTATGGTCGTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACT
* *
35998944 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACT
1 GATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACACT
* *
35998991 GATGCCATATCCTAAATATGGTCTTATACG
1 GATGCCATATCCCAGATATGGTCTTATACG
35999021 GAAATCACTT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
46 28 0.26
47 40 0.37
48 12 0.11
49 28 0.26
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACT
Found at i:35999073 original size:31 final size:31
Alignment explanation
Indices: 35999038--35999186 Score: 219
Period size: 31 Copynumber: 4.8 Consensus size: 31
35999028 CTTGTCACTT
*
35999038 GTAGCCGAAGCTACCACTATTCACTGATCTA-
1 GTAGCCGAAGCTACCACTTTTCACTGATC-AG
* *
35999069 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
35999100 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
35999131 GTAGCAGAAGCTACCACTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
35999162 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
35999187 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
30 1 0.01
31 105 0.99
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:35999260 original size:50 final size:51
Alignment explanation
Indices: 35999163--35999288 Score: 173
Period size: 50 Copynumber: 2.5 Consensus size: 51
35999153 ATTGATCAGG
* * *
35999163 TAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGTA
1 TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
* * *
35999214 TAGCCGAAGCTATCACTTATCA-TTTTCACTTGTCTTTGATCAGATAAGTG
1 TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
* *
35999264 TAGCTGAAGCTATCAGTTATCACTT
1 TAGCCGAAGCTATCACTTATCACTT
35999289 CTTGCCATGG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
50 44 0.67
51 22 0.33
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (51 bp):
TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
Found at i:36004953 original size:42 final size:42
Alignment explanation
Indices: 36004887--36005047 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
36004877 TCTTTTTCTC
** * *
36004887 GATGCCATAGTTCAACTATAGTCTTACACATCTTCACATATT
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATATT
* * *
36004929 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATC
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATATT
* *
36004971 GATCCCATAGCTCAGCTATGGTCTTACACGTAATCACATATCACATATT
1 GATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATATT
*
36005020 GATGCCATAGCCCAGCTATGGTCGTACA
1 GATGCCATAGCCCAGCTATGGTCTTACA
36005048 TGAATCACAT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
42 62 0.64
45 2 0.02
48 1 0.01
49 32 0.33
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATATT
Found at i:36005030 original size:49 final size:48
Alignment explanation
Indices: 36004955--36005060 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
36004945 TATGGTCTTA
* * *
36004955 CACATATTCATATATCGATCCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATCCCATAGCCCAGCTATGGTCGTACACG-AAT
* * *
36005005 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACATGAAT
1 CACATATCACATATCGATCCCATAGCCCAGCTATGGTCGTACACGAAT
36005053 CACATATC
1 CACATATC
36005061 TAACTGATGC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
48 11 0.22
49 33 0.66
50 6 0.12
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATCCCATAGCCCAGCTATGGTCGTACACGAAT
Found at i:36005080 original size:46 final size:49
Alignment explanation
Indices: 36004975--36005080 Score: 137
Period size: 49 Copynumber: 2.2 Consensus size: 49
36004965 TATATCGATC
* * *
36004975 CCATAGCTCAGCTATGGTCTTACACGTAATCACATATCACATATTGATG
1 CCATAGCCCAGCTATGGTCGTACACGTAATCACATATCACATACTGATG
* *
36005024 CCATAGCCCAGCTATGGTCGTACATG-AATCACATATC-TA-ACTGATG
1 CCATAGCCCAGCTATGGTCGTACACGTAATCACATATCACATACTGATG
*
36005070 CCATATCCCAG
1 CCATAGCCCAG
36005081 ATGTGGTCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
46 16 0.31
47 1 0.02
48 11 0.22
49 23 0.45
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (49 bp):
CCATAGCCCAGCTATGGTCGTACACGTAATCACATATCACATACTGATG
Found at i:36005195 original size:31 final size:31
Alignment explanation
Indices: 36005160--36005308 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
36005150 CTTGTCACTT
* *
36005160 GTAGCCGAAGCTACCACTATTCACTGATCTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
36005191 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
36005222 GTAACCGGAGCTACCAATTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
36005253 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
36005284 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
36005309 TGTCATTTGT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:36005395 original size:50 final size:51
Alignment explanation
Indices: 36005284--36005410 Score: 184
Period size: 50 Copynumber: 2.5 Consensus size: 51
36005274 CACTGATCAG
* * *
36005284 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
36005335 ATAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
36005385 GTAGCTGAAGCTATAACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
36005411 CTTTCCATGG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:36007175 original size:31 final size:31
Alignment explanation
Indices: 36007134--36007197 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36007124 CCTTTTCATA
*
36007134 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
36007165 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
36007196 TT
1 TT
36007198 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:36007443 original size:24 final size:24
Alignment explanation
Indices: 36007391--36007556 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
36007381 GCTTTATCAT
*
36007391 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
36007416 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
36007440 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
36007463 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
36007487 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
36007511 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
36007534 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36007557 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:36007467 original size:47 final size:48
Alignment explanation
Indices: 36007390--36007556 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
36007380 TGCTTTATCA
* *
36007390 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
36007439 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
36007486 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
36007533 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
36007557 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:36007491 original size:71 final size:71
Alignment explanation
Indices: 36007391--36007556 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
36007381 GCTTTATCAT
* *
36007391 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
36007455 GCCCTTTA
64 GCCCTTTA
* * *
36007463 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
36007528 CCTTTA
66 CCTTTA
36007534 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36007557 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:36007629 original size:9 final size:9
Alignment explanation
Indices: 36007615--36007691 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
36007605 ATCTCGTGTG
36007615 CATATCATA
1 CATATCATA
*
36007624 CATATCATGTG
1 CATATCA--TA
36007635 CATATCATA
1 CATATCATA
* *
36007644 CATGTCATGTG
1 CATATCA--TA
36007655 CATATCATA
1 CATATCATA
*
36007664 CATATCATGTG
1 CATATCA--TA
36007675 CATATCATA
1 CATATCATA
36007684 CATATCAT
1 CATATCAT
36007692 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:36007634 original size:20 final size:20
Alignment explanation
Indices: 36007611--36007693 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
36007601 GAACATCTCG
36007611 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
36007631 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
36007651 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
36007671 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
36007691 TGT
1 TGT
36007694 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:36007640 original size:11 final size:11
Alignment explanation
Indices: 36007611--36007682 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
36007601 GAACATCTCG
36007611 TGTGCATATCA
1 TGTGCATATCA
*
36007622 --TACATATCA
1 TGTGCATATCA
36007631 TGTGCATATCA
1 TGTGCATATCA
* *
36007642 --TACATGTCA
1 TGTGCATATCA
36007651 TGTGCATATCA
1 TGTGCATATCA
*
36007662 --TACATATCA
1 TGTGCATATCA
36007671 TGTGCATATCA
1 TGTGCATATCA
36007682 T
1 T
36007683 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:36007776 original size:25 final size:25
Alignment explanation
Indices: 36007730--36007777 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36007720 ATATATAAAC
* * * *
36007730 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36007755 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36007778 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36009008 original size:27 final size:27
Alignment explanation
Indices: 36008935--36008999 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
36008925 GGGCATATTC
* *
36008935 GTCATTTTACCATACAGGGGCATCACG
1 GTCACTTTACCCTACAGGGGCATCACG
* *
36008962 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCATCACG
36008989 GTCACTTTACC
1 GTCACTTTACC
36009000 TAATAGGGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCATCACG
Found at i:36009083 original size:27 final size:27
Alignment explanation
Indices: 36009057--36009282 Score: 102
Period size: 27 Copynumber: 8.3 Consensus size: 27
36009047 ATCTACAAAC
*
36009057 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
36009084 CAATGGTATTTCTA-CAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
36009113 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
36009140 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** ***
36009167 TGAGGGTATTTC-GATAATTTCACAAA-
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
* ** **
36009193 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCAGTAATTTTGTAAAT
* *
36009220 CTAGGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *** *
36009248 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
36009275 TAAGGGTA
1 CAAGGGTA
36009283 AAATAGTAAT
Statistics
Matches: 152, Mismatches: 36, Indels: 22
0.72 0.17 0.10
Matches are distributed among these distances:
26 4 0.03
27 121 0.80
28 10 0.07
29 16 0.11
30 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:36009283 original size:27 final size:27
Alignment explanation
Indices: 36009233--36009551 Score: 378
Period size: 27 Copynumber: 11.9 Consensus size: 27
36009223 GGGGTATTTT
*
36009233 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
** *
36009260 AGTAATTCTGTAAATTAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
36009287 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
36009314 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
36009341 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
36009368 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
36009395 -GATAATTATGTAAATTG-GGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
36009421 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
36009448 AGTAATTTTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
36009475 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
36009502 -GATAATTTTACAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
36009529 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
36009552 CTTTGGTAAT
Statistics
Matches: 258, Mismatches: 27, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
26 24 0.09
27 232 0.90
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:36009588 original size:27 final size:27
Alignment explanation
Indices: 36009558--36009622 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
36009548 GGTACTTTGG
36009558 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
36009585 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
36009612 TAATTTCACAA
1 TAATTTTACAA
36009623 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:36009615 original size:81 final size:76
Alignment explanation
Indices: 36009503--36009741 Score: 208
Period size: 81 Copynumber: 3.0 Consensus size: 76
36009493 GGGTAAAACG
*** *
36009503 ATAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACA
1 ATAATTTTAC-AATCGAGGGTATTTCGGTAATT-TATAAATCAAGGGTA-TTTGGTAATTTTACA
36009568 AGTCGAGGGTATTTCA
63 AG-C-AGGGTATTTCA
* * * * *
36009584 ATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA
1 ATAATTTTACA-ATCGAGGGTATTTCGGTAATTT-ATAAATCAAGGGTA-TTTGGTAATTTTACA
* **
36009649 AACTAGGGGTATTTTG
63 AGC-A-GGGTATTTCA
* * * * *
36009665 ATAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTAGTAATTTTACAA
1 ATAATTTTACAATCGA-GGGTATTTCGGTAA-TTTATAAATCAAGGGTATTTGGTAATTTTAC-A
36009730 AGCAGGGTATTT
63 AGCAGGGTATTT
36009742 TGGTAATTTT
Statistics
Matches: 127, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
79 8 0.06
80 20 0.16
81 96 0.76
82 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (76 bp):
ATAATTTTACAATCGAGGGTATTTCGGTAATTTATAAATCAAGGGTATTTGGTAATTTTACAAGC
AGGGTATTTCA
Found at i:36009631 original size:27 final size:26
Alignment explanation
Indices: 36009601--36009751 Score: 153
Period size: 27 Copynumber: 5.7 Consensus size: 26
36009591 TACAGGTCGA
* *
36009601 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTT-AGTAATTTTACAAACTAG
*
36009628 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTA-TTTAGTAATTTTACAAACTAG
*
36009655 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTAG-TAATTTTACAAACTAG
* * * *
36009682 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTA-TTTAGTAATTTTACAAACTAG
36009709 GGGTATTTAGTAATTTTACAAAGC-A-
1 GGGTATTTAGTAATTTTACAAA-CTAG
*
36009734 GGGTATTTTGGTAATTTT
1 GGGTA-TTTAGTAATTTT
36009752 GTAAACCAAA
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
25 5 0.05
26 31 0.29
27 65 0.60
28 7 0.06
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTACAAACTAG
Found at i:36009643 original size:54 final size:52
Alignment explanation
Indices: 36009600--36009751 Score: 200
Period size: 54 Copynumber: 2.9 Consensus size: 52
36009590 TTACAGGTCG
* *
36009600 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTT-AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC-A
* * *
36009654 GGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CA
36009708 AGGGTATTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTT
1 AGGGTATTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTT
36009752 GTAAACCAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
52 18 0.20
53 14 0.16
54 55 0.62
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (52 bp):
AGGGTATTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACA
Found at i:36009765 original size:26 final size:26
Alignment explanation
Indices: 36009629--36009768 Score: 129
Period size: 27 Copynumber: 5.3 Consensus size: 26
36009619 ACAAATTAGG
* * *
36009629 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
36009656 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
36009683 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
36009709 GGGTA-TTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
36009735 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
36009761 AGTATTTT
1 GGTATTTT
36009769 AAATAGGGAT
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
25 4 0.04
26 40 0.42
27 52 0.54
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:36011710 original size:42 final size:42
Alignment explanation
Indices: 36011664--36011808 Score: 166
Period size: 42 Copynumber: 3.3 Consensus size: 42
36011654 TAGTTCAACA
36011664 ATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCT
1 ATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCT
* * *
36011706 ATGGTCTTACACATATTCATAT-ATCGATGCCATAGCTCAGCT
1 ATGGTCTTACACATCTTCACATAAT-GATGCCATAGCCCAGCT
*
36011748 ATGGTCTTACACGTAATCACATATCACATATTGATGCCATAGCCCAGCT
1 ATGGTCTTACAC---AT--C-T-TCACATAATGATGCCATAGCCCAGCT
*
36011797 ATGGTCGTACAC
1 ATGGTCTTACAC
36011809 GAATCACATA
Statistics
Matches: 86, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
41 2 0.02
42 48 0.56
45 2 0.02
48 1 0.01
49 32 0.37
50 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCT
Found at i:36011788 original size:49 final size:48
Alignment explanation
Indices: 36011715--36011854 Score: 167
Period size: 49 Copynumber: 2.9 Consensus size: 48
36011705 TATGGTCTTA
* * *
36011715 CACATATTCATATATCGATGCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
36011765 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * *
36011813 CACATATCTC--ACTGATGACATATCCCAGATATGGTCTTACAC
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACAC
36011855 AGTAGCATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 27 0.34
48 12 0.15
49 35 0.44
50 6 0.08
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (48 bp):
CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:36011957 original size:31 final size:31
Alignment explanation
Indices: 36011922--36012068 Score: 190
Period size: 31 Copynumber: 4.7 Consensus size: 31
36011912 TGTCACTTGT
*
36011922 AGCCGAAGCTACCACTATTCACTGATCTA-GA
1 AGCCGAAGCTACCACTTTTCACTGATC-AGGA
* *
36011953 AGCCGGAGCTACCATTTTTCACTGATCAGGTA
1 AGCCGAAGCTACCACTTTTCACTGATCAGG-A
* *
36011985 A-CCGGAGCTACCACTTTTCACTGATCAGGT
1 AGCCGAAGCTACCACTTTTCACTGATCAGGA
* * *
36012015 AGCAGAAGCAACCACTTTTCACTGATCAGGT
1 AGCCGAAGCTACCACTTTTCACTGATCAGGA
36012046 AGCCGAAGCTACCACTTTTCACT
1 AGCCGAAGCTACCACTTTTCACT
36012069 TGTCATTTGT
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
30 2 0.02
31 99 0.96
32 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (31 bp):
AGCCGAAGCTACCACTTTTCACTGATCAGGA
Found at i:36012155 original size:50 final size:51
Alignment explanation
Indices: 36012045--36012170 Score: 164
Period size: 50 Copynumber: 2.5 Consensus size: 51
36012035 ACTGATCAGG
* * * *
36012045 TAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATTAGATAAGTA
1 TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
* *
36012096 TAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGTG
1 TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
** *
36012146 TAGTTGAAGCTATCACTTACCACTT
1 TAGCCGAAGCTATCACTTATCACTT
36012171 CTTGCCATGG
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 43 0.65
51 23 0.35
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (51 bp):
TAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGTA
Found at i:36014141 original size:42 final size:42
Alignment explanation
Indices: 36014095--36014239 Score: 166
Period size: 42 Copynumber: 3.3 Consensus size: 42
36014085 TAGTTCAACA
36014095 ATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCT
1 ATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCT
* * *
36014137 ATGGTCTTACACATATTCATAT-ATCGATGCCATAGCTCAGCT
1 ATGGTCTTACACATCTTCACATAAT-GATGCCATAGCCCAGCT
*
36014179 ATGGTCTTACACGTAATCACATATCACATATTGATGCCATAGCCCAGCT
1 ATGGTCTTACAC---AT--C-T-TCACATAATGATGCCATAGCCCAGCT
*
36014228 ATGGTCGTACAC
1 ATGGTCTTACAC
36014240 GAATCACATA
Statistics
Matches: 86, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
41 2 0.02
42 48 0.56
45 2 0.02
48 1 0.01
49 32 0.37
50 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCT
Found at i:36014219 original size:49 final size:48
Alignment explanation
Indices: 36014146--36014285 Score: 167
Period size: 49 Copynumber: 2.9 Consensus size: 48
36014136 TATGGTCTTA
* * *
36014146 CACATATTCATATATCGATGCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
36014196 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * *
36014244 CACATATCTC--ACTGATGACATATCCCAGATATGGTCTTACAC
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACAC
36014286 AGTAGCATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 27 0.34
48 12 0.15
49 35 0.44
50 6 0.08
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (48 bp):
CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:36014386 original size:31 final size:31
Alignment explanation
Indices: 36014351--36014499 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
36014341 CTTGTCACTT
* *
36014351 GTAGCCGAAGCTACCGCTATTCACTGATCTA-
1 GTAGCCGAAGCTACCACTTTTCACTGATC-AG
* *
36014382 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
36014413 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
36014444 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
36014475 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
36014500 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
30 1 0.01
31 105 0.99
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:36014586 original size:50 final size:51
Alignment explanation
Indices: 36014475--36014601 Score: 166
Period size: 50 Copynumber: 2.5 Consensus size: 51
36014465 CACTAATCAG
* * * * *
36014475 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTAACTTGTCCTTGATCAGATAAGT
* *
36014526 ATAGCCGAAGCTATCACTTATCACTT-TAACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTAACTTGTCCTTGATCAGATAAGT
* *
36014576 GTAGCTGAAGCTATCACTTACCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
36014602 CTTGCCATGG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 43 0.65
51 23 0.35
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTAACTTGTCCTTGATCAGATAAGT
Found at i:36016557 original size:42 final size:42
Alignment explanation
Indices: 36016507--36016682 Score: 169
Period size: 42 Copynumber: 4.0 Consensus size: 42
36016497 CTTCATTTTC
* * * *
36016507 TCGATGCCATAGTTCAACAATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACAT-A
* *
36016550 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACATA
36016591 TCGATGCCATAGCTCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACAC---AT---AT-TCACATA
* * *
36016640 TTGATGCCATAGCCCAGCTATGGTCGTACACGA-A-TCACATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACAC-ATATTCACATA
36016681 TC
1 TC
36016683 TCACTGATGC
Statistics
Matches: 112, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
41 10 0.09
42 61 0.54
43 2 0.02
45 2 0.02
47 1 0.01
48 2 0.02
49 34 0.30
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACATA
Found at i:36016650 original size:49 final size:48
Alignment explanation
Indices: 36016577--36016713 Score: 170
Period size: 49 Copynumber: 2.9 Consensus size: 48
36016567 TATGGTCTTA
* * *
36016577 CACATATTCATATATCGATGCCATAGCTCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATTGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
36016627 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCGTACACGAAT
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
36016675 CACATATCTC--ACTGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTA
36016714 TACATTAGCA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 25 0.32
48 12 0.15
49 35 0.45
50 6 0.08
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
CACATATCACATATTGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:36016816 original size:31 final size:31
Alignment explanation
Indices: 36016781--36016929 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
36016771 CTTGTCACTT
* *
36016781 GTAGCCGAAGCTACCACTATTCACTGATCTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
36016812 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
36016843 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
36016874 GTAACTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
36016905 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
36016930 TGTCATTTTC
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:36016995 original size:50 final size:50
Alignment explanation
Indices: 36016906--36017030 Score: 180
Period size: 50 Copynumber: 2.5 Consensus size: 50
36016896 ACTGATCAGG
* * *
36016906 TAGCCGAAGCTACCACTTTTCACTTGTCATTTTCCTTGATCAGATAAGTA
1 TAGCCGAAGCTATCACTTATCACTTGTCATTGTCCTTGATCAGATAAGTA
* *
36016956 TAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGTG
1 TAGCCGAAGCTATCACTTATCACTTGTCA-TTGTCCTTGATCAGATAAGTA
*
36017006 TAGCTGAAGCTATCACTTATCACTT
1 TAGCCGAAGCTATCACTTATCACTT
36017031 CTTGCCATGG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
49 3 0.04
50 65 0.96
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (50 bp):
TAGCCGAAGCTATCACTTATCACTTGTCATTGTCCTTGATCAGATAAGTA
Found at i:36020108 original size:14 final size:14
Alignment explanation
Indices: 36020091--36020121 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36020081 CTTGTATTTA
*
36020091 TTATTTTTATGTTT
1 TTATTTTTATCTTT
36020105 TTATTTTTATCTTT
1 TTATTTTTATCTTT
36020119 TTA
1 TTA
36020122 AAACTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TTATTTTTATCTTT
Found at i:36027227 original size:43 final size:43
Alignment explanation
Indices: 36027180--36027282 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
36027170 TGCCACTATT
* * *
36027180 CCAGACAGGGCCTTACACGAAACCACAATACGATGCCAATGTC
1 CCAGACATGGTCTTACACGAAACCACAATACAATGCCAATGTC
* * * **
36027223 CCAGACATGGTCTTACATGTAATCTTAATACAATGCCAATGTC
1 CCAGACATGGTCTTACACGAAACCACAATACAATGCCAATGTC
36027266 CCAGACATGGTCTTACA
1 CCAGACATGGTCTTACA
36027283 TGTAATCACA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
CCAGACATGGTCTTACACGAAACCACAATACAATGCCAATGTC
Found at i:36027283 original size:43 final size:43
Alignment explanation
Indices: 36027206--36027289 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
36027196 ACGAAACCAC
*
36027206 AATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCTT
1 AATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTT
36027249 AATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 AATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
36027290 ACATCTCGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
AATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTT
Found at i:36037386 original size:101 final size:101
Alignment explanation
Indices: 36037259--36037476 Score: 267
Period size: 101 Copynumber: 2.1 Consensus size: 101
36037249 TCGCACATGT
* * **
36037259 ATATTGGAATCACATTTTGATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATCA-GA
1 ATATCGGAATCACATATCAATGCCAACGTATAAAACGTGGACTTACTCGCACACATATAT-AGGA
* * *
36037323 ATCACATATTGATTCCATGGTCTTACTCACACATCAC
65 ATCACACATCGATGCCATGGTCTTACTCACACATCAC
* * * * *
36037360 ATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCGCATATATATAGGAA
1 ATATCGGAATCACATATCAATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATAGGAA
** *
36037425 TCACACATCGATGCCATGGTCTTACTTGCACATTAC
66 TCACACATCGATGCCATGGTCTTACTCACACATCAC
*
36037461 ATATCAGAATTCACAT
1 ATATCGGAA-TCACAT
36037477 GCCGATGCCT
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
100 1 0.01
101 92 0.93
102 6 0.06
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (101 bp):
ATATCGGAATCACATATCAATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATAGGAA
TCACACATCGATGCCATGGTCTTACTCACACATCAC
Found at i:36040309 original size:50 final size:50
Alignment explanation
Indices: 36040188--36040425 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
36040178 AGCCGAAGCT
* * * *
36040188 ATCTGATACGCATAGTAGCCTGCATTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
* * * *
36040237 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
* * * *
36040287 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CC
* * *
36040338 AT-TGAATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTG-ATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
* *
36040387 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
36040426 CGTGTACTCC
Statistics
Matches: 161, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
49 41 0.25
50 78 0.48
51 42 0.26
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACC
Found at i:36047730 original size:50 final size:50
Alignment explanation
Indices: 36047618--36047843 Score: 253
Period size: 50 Copynumber: 4.5 Consensus size: 50
36047608 CTGATATGCA
* * *
36047618 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* *
36047667 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* * * * * *
36047717 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCAT-TGAATACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CCATCTG-ATACACG
* * * *
36047768 TAGTAGCCTACACTTAGTACTACACATGCGACTTAA-CAGTATCG-TACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCA-TCT-GATACACG
36047818 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
36047844 TGTGTACTCA
Statistics
Matches: 151, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
49 33 0.22
50 78 0.52
51 39 0.26
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
Found at i:36054785 original size:27 final size:28
Alignment explanation
Indices: 36054754--36054813 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
36054744 TGTACTTGGA
*
36054754 CCCCTAAT-CGATAAAGTGACT-ATTATG
1 CCCCTAATGCGATAAAATGACTGA-TATG
*
36054781 CCCCT-ATGTGATAAAATGACTGATATG
1 CCCCTAATGCGATAAAATGACTGATATG
36054808 CCCCTA
1 CCCCTA
36054814 TGAGATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
26 2 0.07
27 25 0.89
28 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (28 bp):
CCCCTAATGCGATAAAATGACTGATATG
Found at i:36054814 original size:27 final size:27
Alignment explanation
Indices: 36054763--36054815 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
36054753 ACCCCTAATC
*
36054763 GATAAAGTGACTATTATGCCCCTATGT
1 GATAAAATGACTATTATGCCCCTATGT
36054790 GATAAAATGACTGA-TATGCCCCTATG
1 GATAAAATGACT-ATTATGCCCCTATG
36054816 AGATGTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGT
Found at i:36072263 original size:20 final size:20
Alignment explanation
Indices: 36072240--36072321 Score: 78
Period size: 20 Copynumber: 4.1 Consensus size: 20
36072230 TATGTAAAAA
36072240 AAATAATATATAATATATAT
1 AAATAATATATAATATATAT
* * ** *
36072260 AAATAATA-ACAATTTGCGAA
1 AAATAATATATAATAT-ATAT
*
36072280 AAATAATATATAATAAATAT
1 AAATAATATATAATATATAT
36072300 AAATAATATA-AATAATATAT
1 AAATAATATATAAT-ATATAT
36072320 AA
1 AA
36072322 TAAAATACTT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
19 8 0.17
20 35 0.74
21 4 0.09
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AAATAATATATAATATATAT
Found at i:36074321 original size:206 final size:206
Alignment explanation
Indices: 36073948--36074708 Score: 1227
Period size: 206 Copynumber: 3.7 Consensus size: 206
36073938 AAATCTGCTT
* * *
36073948 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * * * *
36074013 GCGAAAACCAAATCAGCTATG-TCTTCGATTTGCTCCTTCTAAGCACAAAGATACCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
* * * * ** *
36074077 TGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
130 TGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
**
36074142 GGAGATTCCAAA
195 GGAGACACCAAA
36074154 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
36074219 ATGAAAGCCAAATTAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
36074284 GGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
36074349 GAGACACAAAA
196 GAGACACCAAA
*
36074360 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
36074425 GTGAAAGCCAAATTAACTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
36074490 GGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
36074555 GAGACACCAAA
196 GAGACACCAAA
* *
36074566 CTTTGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
36074631 GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTATAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
36074696 GGATCTTGCTTCA
131 GGATC-TGCTTCA
36074709 GCCAGATCTG
Statistics
Matches: 521, Mismatches: 32, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
206 513 0.98
207 8 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
GAGACACCAAA
Found at i:36075598 original size:10 final size:11
Alignment explanation
Indices: 36075585--36075625 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
36075575 GGCCTCTCCA
36075585 TTTTTCTCTTT
1 TTTTTCTCTTT
36075596 TTTTTCCTCTTCT
1 TTTTT-CTCTT-T
36075609 TTCTTTCTCTTT
1 TT-TTTCTCTTT
36075621 TTTTT
1 TTTTT
36075626 TTGAAACCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 8 0.30
12 8 0.30
13 8 0.30
14 3 0.11
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTCTCTTT
Found at i:36075605 original size:24 final size:25
Alignment explanation
Indices: 36075577--36075625 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
36075567 TTCACCATGG
36075577 CCTCTCCATT-TTTCTCTTTTTTTT
1 CCTCTCCATTCTTTCTCTTTTTTTT
* *
36075601 CCTCTTCTTTCTTTCTCTTTTTTTT
1 CCTCTCCATTCTTTCTCTTTTTTTT
36075626 TTGAAACCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (25 bp):
CCTCTCCATTCTTTCTCTTTTTTTT
Found at i:36086386 original size:23 final size:22
Alignment explanation
Indices: 36086350--36086413 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 22
36086340 AATTTAACGT
*
36086350 ATAAATATACAAAACAAATGTA
1 ATAAATATAAAAAACAAATGTA
36086372 ATAATATATAAAAAA-ATAATGTA
1 ATAA-ATATAAAAAACA-AATGTA
* **
36086395 GTAACATATATCAAACAAA
1 ATAA-ATATAAAAAACAAA
36086414 CAACACCTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 5 0.15
23 28 0.82
24 1 0.03
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.25
Consensus pattern (22 bp):
ATAAATATAAAAAACAAATGTA
Found at i:36086472 original size:19 final size:19
Alignment explanation
Indices: 36086445--36086484 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36086435 GACTAGCATT
* *
36086445 TAATGTATAAATGATATAA
1 TAATATATAAAAGATATAA
*
36086464 TAATATATAAAAGATTTAA
1 TAATATATAAAAGATATAA
36086483 TA
1 TA
36086485 CAACAATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (19 bp):
TAATATATAAAAGATATAA
Found at i:36086504 original size:7 final size:7
Alignment explanation
Indices: 36086492--36086633 Score: 78
Period size: 7 Copynumber: 20.1 Consensus size: 7
36086482 ATACAACAAT
36086492 TATAATA
1 TATAATA
36086499 TATAATA
1 TATAATA
*
36086506 TAAAAGTA
1 TATAA-TA
*
36086514 TAT-ATG
1 TATAATA
* *
36086520 TAAAAAA
1 TATAATA
*
36086527 AATAATA
1 TATAATA
36086534 TATAATA
1 TATAATA
36086541 TAT-ATA
1 TATAATA
*
36086547 AATAATA
1 TATAATA
* *
36086554 -ACAATT
1 TATAATA
*
36086560 TGCTAA-A
1 T-ATAATA
*
36086567 AATAATA
1 TATAATA
36086574 TATAATA
1 TATAATA
*
36086581 AATAATA
1 TATAATA
36086588 -ATAATA
1 TATAATA
36086594 TAAATAATA
1 T--ATAATA
36086603 TATAATAA
1 TATAAT-A
* *
36086611 AATACTTA
1 TATA-ATA
36086619 TATAATA
1 TATAATA
36086626 TATAATA
1 TATAATA
36086633 T
1 T
36086634 GAAAATAAGG
Statistics
Matches: 100, Mismatches: 24, Indels: 22
0.68 0.16 0.15
Matches are distributed among these distances:
6 21 0.21
7 57 0.57
8 14 0.14
9 8 0.08
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (7 bp):
TATAATA
Found at i:36086549 original size:20 final size:20
Alignment explanation
Indices: 36086526--36086629 Score: 77
Period size: 20 Copynumber: 5.0 Consensus size: 20
36086516 TATGTAAAAA
36086526 AAATAATATATAATATATAT
1 AAATAATATATAATATATAT
* * * *
36086546 AAATAATA-ACAATTTGCTAA
1 AAATAATATATAATAT-ATAT
*
36086566 AAATAATATATAATAAATA-
1 AAATAATATATAATATATAT
36086585 ATAATAATATAAATAATATATAAT
1 A-AATAATAT--ATAATATAT-AT
*
36086609 AAAATACTTATATAATATATA
1 -AAATA-ATATATAATATATA
36086630 ATATGAAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
19 6 0.09
20 28 0.43
21 4 0.06
22 9 0.14
23 10 0.15
24 4 0.06
25 4 0.06
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.36
Consensus pattern (20 bp):
AAATAATATATAATATATAT
Found at i:36086598 original size:29 final size:29
Alignment explanation
Indices: 36086493--36086611 Score: 95
Period size: 29 Copynumber: 4.0 Consensus size: 29
36086483 TACAACAATT
* *
36086493 ATAATATATAATATAAA-AGTATATATGTAA
1 ATAATA-ATAATATAAATAATATATA-ATAA
*
36086523 A-AAAAATAATAT--ATAATATAT-ATAA
1 ATAATAATAATATAAATAATATATAATAA
* *
36086548 ATAATAACAATTTGCTAAAAATAATATATAATAA
1 ATAATAATAA-----TATAAATAATATATAATAA
36086582 ATAATAATAATATAAATAATATATAATAA
1 ATAATAATAATATAAATAATATATAATAA
36086611 A
1 A
36086612 ATACTTATAT
Statistics
Matches: 71, Mismatches: 8, Indels: 21
0.71 0.08 0.21
Matches are distributed among these distances:
25 4 0.06
26 7 0.10
27 6 0.08
28 7 0.10
29 22 0.31
30 1 0.01
31 2 0.03
33 9 0.13
34 13 0.18
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (29 bp):
ATAATAATAATATAAATAATATATAATAA
Found at i:36090998 original size:28 final size:28
Alignment explanation
Indices: 36090933--36091033 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36090923 ATAGTGAATC
*
36090933 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
36090962 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36090990 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
36091020 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36091034 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36098921 original size:28 final size:28
Alignment explanation
Indices: 36098856--36098956 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36098846 ATAGTGAATC
*
36098856 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
36098885 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36098913 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
36098943 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36098957 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36101677 original size:17 final size:18
Alignment explanation
Indices: 36101650--36101683 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36101640 AATTAAATAT
36101650 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
36101668 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
36101684 TAAAAATACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:36101765 original size:14 final size:13
Alignment explanation
Indices: 36101728--36101769 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
36101718 AAATTGATAA
36101728 AAATTA-ATATAT
1 AAATTATATATAT
36101740 AAATTATAATATAT
1 AAATTAT-ATATAT
36101754 ATAATTATATAT-T
1 A-AATTATATATAT
36101767 AAA
1 AAA
36101770 GATTATCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 8 0.30
13 2 0.07
14 11 0.41
15 6 0.22
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
AAATTATATATAT
Found at i:36101997 original size:29 final size:30
Alignment explanation
Indices: 36101940--36101997 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
36101930 CTTTTGAAAA
* * *
36101940 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
36101970 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
36101998 AAAATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:36103691 original size:50 final size:50
Alignment explanation
Indices: 36103622--36103861 Score: 270
Period size: 50 Copynumber: 4.8 Consensus size: 50
36103612 AAGTTAACGG
*
36103622 GTACACATAGTAGCCTGCACTTAGTACTACACATATGACCTATCAATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTA
* * * * *
36103672 GTACACGTAGTAGCTTGCACTTAGTACTACACATGTGACTTAACTATCT-
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTA
* * ** *
36103721 GATACACATAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-C-A
1 G-TACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTA
* * *
36103772 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTG
1 -GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTA
* * *
36103823 GTACACGTAGTAGCCTGCACTTGGTACTACACACGTGAC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
36103862 TCACAACGAA
Statistics
Matches: 155, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 4 0.03
50 113 0.73
51 36 0.23
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTA
Found at i:36103792 original size:101 final size:100
Alignment explanation
Indices: 36103623--36103861 Score: 293
Period size: 101 Copynumber: 2.4 Consensus size: 100
36103613 AGTTAACGGG
** * * *
36103623 TACACATAGTAGCCTGCACTTAGTACTACACATATGACCTATCAATCTAGTACACGTAGTAGCTT
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTAGTACACATAGTAGCCT
* * *
36103688 GCACTTAGTACTACACATGTGACTTAACTATCTGA
66 GCACTTAGTACTACACATGCGACCTAACAATCTGA
* * * *
36103723 TACACATAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-C-AGGTACGCATAGTAG
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAATCTA-GTACACATAGTAG
* *
36103786 CCTGCACTTAGTACTACACATGCGACCTATCAATCTGG
63 CCTGCACTTAGTACTACACATGCGACCTAACAATCTGA
* *
36103824 TACACGTAGTAGCCTGCACTTGGTACTACACACGTGAC
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
36103862 TCACAACGAA
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
100 36 0.30
101 80 0.67
102 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (100 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTAGTACACATAGTAGCCT
GCACTTAGTACTACACATGCGACCTAACAATCTGA
Found at i:36103862 original size:151 final size:151
Alignment explanation
Indices: 36103588--36103862 Score: 478
Period size: 151 Copynumber: 1.8 Consensus size: 151
36103578 TAATAGCTTG
*
36103588 CACTTAGTACTACACACGTGATCGAAGTTAACGGGTACACATAGTAGCCTGCACTTAGTACTACA
1 CACTTAGTACTACACACGTGATCGAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACA
* * *
36103653 CATATGACCTATCAATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACATGTGACTTAACTA
66 CATACGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACTA
36103718 TCTGATACACATAGTAGCCTA
131 TCTGATACACATAGTAGCCTA
*
36103739 CACTTAGTACTACACACGTGATCGAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACA
1 CACTTAGTACTACACACGTGATCGAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACA
* * *
36103804 CATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTGGTACTACACACGTGACT
66 CATACGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT
36103863 CACAACGAAT
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 116 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
CACTTAGTACTACACACGTGATCGAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACA
CATACGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACTA
TCTGATACACATAGTAGCCTA
Found at i:36104234 original size:18 final size:20
Alignment explanation
Indices: 36104205--36104250 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
36104195 AAGAACATGT
36104205 TATATCATCAAA-TAATCACA
1 TATAT-ATCAAATTAATCACA
*
36104225 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
36104244 TATATAT
1 TATATAT
36104251 ACTTACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:36104528 original size:30 final size:30
Alignment explanation
Indices: 36104471--36104528 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
36104461 CAAAAATCAT
* * *
36104471 ACTTTTACAAATTTTCATTTTGACCCCTGA
1 ACTTTCACAAATTTACACTTTGACCCCTGA
* *
36104501 ACTTTCACATATTTACACTTTGGCCCCT
1 ACTTTCACAAATTTACACTTTGACCCCT
36104529 AGGCTCGTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (30 bp):
ACTTTCACAAATTTACACTTTGACCCCTGA
Found at i:36106968 original size:40 final size:40
Alignment explanation
Indices: 36106908--36107071 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
36106898 CGGGATTTAA
* ** *
36106908 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
36106948 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
36106988 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
36107028 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
36107068 CCGG
1 CCGG
36107072 GTATCATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:36107055 original size:80 final size:80
Alignment explanation
Indices: 36106894--36107071 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
36106884 GAATCACGTA
* * * * **
36106894 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
36106958 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
36106973 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
36107037 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
36107053 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36107072 GTATCATTCA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.13
80 69 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:36108883 original size:12 final size:12
Alignment explanation
Indices: 36108866--36108894 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
36108856 CGAGAGATTG
36108866 ATTAAAACTAAA
1 ATTAAAACTAAA
36108878 ATTAAAACTAAA
1 ATTAAAACTAAA
36108890 ATTAA
1 ATTAA
36108895 CTAAATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (12 bp):
ATTAAAACTAAA
Found at i:36110486 original size:19 final size:18
Alignment explanation
Indices: 36110459--36110511 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
36110449 TATTTATACT
*
36110459 AATACTAAAATTTCTAACA
1 AATATTAAAATTT-TAACA
*
36110478 AATATTAAAAATTTTAATA
1 AATATT-AAAATTTTAACA
*
36110497 AAAATTAGAAATTTT
1 AATATTA-AAATTTT
36110512 GATGTAAGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 1 0.03
19 21 0.72
20 7 0.24
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (18 bp):
AATATTAAAATTTTAACA
Found at i:36110490 original size:20 final size:19
Alignment explanation
Indices: 36110465--36110511 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
36110455 TACTAATACT
*
36110465 AAAATTTCTAACAAATATTA
1 AAAATTT-TAACAAAAATTA
*
36110485 AAAATTTTAATAAAAATTA
1 AAAATTTTAACAAAAATTA
*
36110504 GAAATTTT
1 AAAATTTT
36110512 GATGTAAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTTTAACAAAAATTA
Found at i:36115089 original size:31 final size:29
Alignment explanation
Indices: 36115054--36115128 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
36115044 AACGGTTTAA
*
36115054 TGACTAAAATGTTACAACACGATAACATAAG
1 TGACTAAAATGTAACAACAC-A-AACATAAG
* ***
36115085 TGACTAAAACGTAACATTTCAAACATAAG
1 TGACTAAAATGTAACAACACAAACATAAG
*
36115114 TGACTAAAATATAAC
1 TGACTAAAATGTAAC
36115129 CTAAGGCAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
29 21 0.57
30 1 0.03
31 15 0.41
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.24
Consensus pattern (29 bp):
TGACTAAAATGTAACAACACAAACATAAG
Found at i:36121219 original size:18 final size:20
Alignment explanation
Indices: 36121166--36121209 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
36121156 GGACACGGGT
*
36121166 GTGTCCAGAGCCACATGAGC
1 GTGTCCAGAGCCACACGAGC
36121186 GTGTCCAGAGCCACACGAGC
1 GTGTCCAGAGCCACACGAGC
36121206 GTGT
1 GTGT
36121210 GAGACCACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.30, G:0.32, T:0.16
Consensus pattern (20 bp):
GTGTCCAGAGCCACACGAGC
Found at i:36129795 original size:43 final size:43
Alignment explanation
Indices: 36129747--36129834 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
36129737 AAAACCACAT
* *
36129747 GGCCCAAGAACACGCCCGTGTCCTATAACCGTGTCCTTCCCAC
1 GGCCCAAGAACACGCCCGTGTCCTATAACCATATCCTTCCCAC
* *
36129790 GGCCCAAGAACACGCCCTTGTTCTATAACCATATCCTTCCCAC
1 GGCCCAAGAACACGCCCGTGTCCTATAACCATATCCTTCCCAC
36129833 GG
1 GG
36129835 TCAAGACATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.20
Consensus pattern (43 bp):
GGCCCAAGAACACGCCCGTGTCCTATAACCATATCCTTCCCAC
Found at i:36130914 original size:46 final size:45
Alignment explanation
Indices: 36130852--36131019 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
36130842 CGAGGCCAAT
* * * *
36130852 GCATGTTCCAGGCATGTCTTACTCTGGCACTCATAATATGGCTGAA
1 GCATGTCCCAGACATGTCTTACACTGGCACTCATAATAT-GCCGAA
* * * * *
36130898 GCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTGGATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCACTCATAAT--ATGCCGAA
* * *
36130944 GCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTGCCGAA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATATGCCGAA
*
36130991 GCATGCCCCAGACATGTCTTACACTGGCA
1 GCATGTCCCAGACATGTCTTACACTGGCA
36131020 GACAAATCAC
Statistics
Matches: 99, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
45 14 0.14
46 46 0.46
47 23 0.23
48 15 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTGGCACTCATAATATGCCGAA
Found at i:36130921 original size:93 final size:93
Alignment explanation
Indices: 36130808--36131018 Score: 239
Period size: 93 Copynumber: 2.3 Consensus size: 93
36130798 AACCGATGCG
* * * * *
36130808 TGTCCCAGACACGCCTTACACTGGCTATC-TCTGTCGAGGCCAATG-CATGTTCCAGGCAT-GTC
1 TGTCCCAGACATGTCTTACACTGGCCATCGTCTG--GAGGCCAATGCCATGTCCCAGACATGGTC
* *
36130870 TTACTCTGGCACTCATAATATGGCTGAAGCA
64 TTACACTGGCACTCATAATAT-GCCGAAGCA
* * * *
36130901 TGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCCATGTCCCAGACATGGTCTT
1 TGTCCCAGACATGTCTTACACTGGCCATCGTCTGGAGGCCAATGCCATGTCCCAGACATGGTCTT
* * *
36130966 ACACTGGCTCTTATAATGTGCCGAAGCA
66 ACACTGGCACTCATAATATGCCGAAGCA
*
36130994 TGCCCCAGACATGTCTTACACTGGC
1 TGTCCCAGACATGTCTTACACTGGC
36131019 AGACAAATCA
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
92 8 0.08
93 67 0.68
94 24 0.24
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
TGTCCCAGACATGTCTTACACTGGCCATCGTCTGGAGGCCAATGCCATGTCCCAGACATGGTCTT
ACACTGGCACTCATAATATGCCGAAGCA
Found at i:36138308 original size:40 final size:40
Alignment explanation
Indices: 36138249--36138400 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
36138239 CATTGGAATG
* * * *
36138249 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
36138289 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
36138329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * *
36138369 AAATCCGGGTTAAGACCCGAAGGCAATCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
36138401 GAATCACTAT
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.03
40 91 0.95
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:36138351 original size:80 final size:80
Alignment explanation
Indices: 36138249--36138402 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
36138239 CATTGGAATG
* * ** *
36138249 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
36138314 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
36138329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
36138394 ATCGTGCGA
66 ATCGTGCGA
36138403 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:36138417 original size:40 final size:40
Alignment explanation
Indices: 36138249--36138455 Score: 166
Period size: 40 Copynumber: 5.2 Consensus size: 40
36138239 CATTGGAATG
* ** * * * *
36138249 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * ***
36138289 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * *
36138329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACT
* *
36138369 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* ** * * * *
36138409 ATAACCGGGCT-AGGTCCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
36138448 ATATCCGG
1 ATATCCGG
36138456 TTAAATCCCG
Statistics
Matches: 137, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 30 0.22
40 105 0.77
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
Found at i:36138417 original size:80 final size:80
Alignment explanation
Indices: 36138253--36138420 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 80
36138243 GGAATGATAT
* * ** * *
36138253 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
36138318 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * *
36138333 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
36138398 TGCGAATCACTATAA
66 TGCGAATCACTATAA
36138413 CCGGGCTA
1 CCGGGCTA
36138421 GGTCCGAAGA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:36146357 original size:40 final size:40
Alignment explanation
Indices: 36146298--36146448 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
36146288 CATTGGAATG
* * * *
36146298 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
36146338 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
36146378 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * *
36146418 AAATCCGGGTTAA-ACCCGAAGGCAATCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
36146449 GAATCACTAT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 19 0.20
40 74 0.78
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:36146400 original size:80 final size:79
Alignment explanation
Indices: 36146298--36146450 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
36146288 CATTGGAATG
* * ** *
36146298 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAA-ACCCGAAGGCA
*
36146363 TTCGTGCGAGTTGTT
65 ATCGTGCGAGTTGTT
* * * *
36146378 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAACCCGAAGGCAA
36146443 TCGTGCGA
66 TCGTGCGA
36146451 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 19 0.30
80 44 0.70
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAACCCGAAGGCAA
TCGTGCGAGTTGTT
Found at i:36151728 original size:6 final size:6
Alignment explanation
Indices: 36151714--36151763 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
36151704 TCCTATCTCT
* * *
36151714 TTTTTA TTCTTA TTCTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
36151761 TTT
1 TTT
36151764 CAATTTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
5 4 0.10
6 36 0.90
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:36151744 original size:23 final size:24
Alignment explanation
Indices: 36151714--36151763 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
36151704 TCCTATCTCT
36151714 TTTTTATTCTTATTCTTATTTT-A
1 TTTTTATTCTTATTCTTATTTTCA
* *
36151737 TTTTTATTTTTATTTTTATTTTCA
1 TTTTTATTCTTATTCTTATTTTCA
36151761 TTT
1 TTT
36151764 CAATTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTATTCTTATTCTTATTTTCA
Found at i:36151758 original size:17 final size:17
Alignment explanation
Indices: 36151715--36151783 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
36151705 CCTATCTCTT
* *
36151715 TTTTATTCTTATTCTTA
1 TTTTATTTTTATTTTTA
36151732 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTA
* **
36151749 TTTTTATTTTCATTTCAA
1 -TTTTATTTTTATTTTTA
36151767 TTTTATTATTTTATTTT
1 TTTTA-T-TTTTATTTT
36151784 GAAAGACATA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
17 20 0.48
18 15 0.36
19 7 0.17
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTATTTTTATTTTTA
Found at i:36151769 original size:18 final size:18
Alignment explanation
Indices: 36151732--36151770 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
36151722 CTTATTCTTA
* **
36151732 TTTTATTTTTATTTTTAT
1 TTTTATTTTCATTTCAAT
36151750 TTTTATTTTCATTTCAAT
1 TTTTATTTTCATTTCAAT
36151768 TTT
1 TTT
36151771 ATTATTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTTTCATTTCAAT
Found at i:36155925 original size:29 final size:29
Alignment explanation
Indices: 36155893--36156028 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
36155883 ATACCCTTCG
** * *
36155893 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
36155922 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
36155951 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
36155980 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
36156009 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
36156029 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:36156020 original size:58 final size:58
Alignment explanation
Indices: 36155868--36156027 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
36155858 AATTTAAGCC
* *** * * ** * *
36155868 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
36155926 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
36155984 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
36156028 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:36162768 original size:94 final size:92
Alignment explanation
Indices: 36162534--36162788 Score: 259
Period size: 94 Copynumber: 2.8 Consensus size: 92
36162524 ATGCGTGCTG
* * * * * * *
36162534 ATGCATGTCCCAGACATGTCTTACACTAGCA--CA-ACTCTTAGCCG-ATCGTGTCCCAGACACG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCATAAT-ATGGCCGAAGCATGTCCCAGACATG
*
36162595 TCTTACACTGGCCATCTCTGTCGAGGCCA
65 TCTTACACTAGCCATCTCTG-CGAGGCCA
* * * **
36162624 ATGCATGTTCCAGGCATGTCTTACTCTGGCACTCATAATATGGTTGAAGCATGTCCCAGACATGT
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATATGGCCGAAGCATGTCCCAGACATGT
* * *
36162689 CTTACACTAGCCCTCGTCTG-GATGCCG
66 CTTACACTAGCCATC-TCTGCGAGGCCA
* * *
36162716 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCTAGACAT
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATATGGCCGAAGCATGTCCCAGACAT
36162781 GTCTTACA
64 GTCTTACA
36162789 TTGGCGCACA
Statistics
Matches: 134, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
90 27 0.20
92 13 0.10
93 42 0.31
94 52 0.39
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATATGGCCGAAGCATGTCCCAGACATGT
CTTACACTAGCCATCTCTGCGAGGCCA
Found at i:36162771 original size:47 final size:46
Alignment explanation
Indices: 36162488--36162793 Score: 171
Period size: 46 Copynumber: 6.6 Consensus size: 46
36162478 TTGCTGATGC
* * * * * *
36162488 CATGTCCCATACATGGTCTTGCACTGGCTCTCGTATATGCGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-ATGTG-GCCGAAG
* * * * * *
36162537 CATGTCCCAGACATGTCTTACACTAG--CACA-ACTCTTAGCCG-AT
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GTGGCCGAAG
* * * *
36162580 CGTGTCCCAGACACGTCTTACACTGGCCATCTC-T-GTCGAGGCC-AATG
1 CATGTCCCAGACATGTCTTACACTGG-C-TCTCATAAT-GTGGCCGAA-G
* * * * * **
36162627 CATGTTCCAGGCATGTCTTACTCTGGCACTCATAATATGGTTGAAG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCGAAG
* * * * *
36162673 CATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTG-GATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTG--GCCGAAG
36162719 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGGCCGAAG
* *
36162767 CATGTCCTAGACATGTCTTACATTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
36162794 GCACAAATCA
Statistics
Matches: 190, Mismatches: 50, Indels: 37
0.69 0.18 0.13
Matches are distributed among these distances:
43 23 0.12
44 5 0.03
45 5 0.03
46 56 0.29
47 53 0.28
48 32 0.17
49 15 0.08
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCGAAG
Found at i:36163617 original size:13 final size:13
Alignment explanation
Indices: 36163599--36163627 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
36163589 CCAAATATTT
36163599 GCTGATATTTTTG
1 GCTGATATTTTTG
36163612 GCTGATATTTTTG
1 GCTGATATTTTTG
36163625 GCT
1 GCT
36163628 AAGAGGGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.10, G:0.24, T:0.52
Consensus pattern (13 bp):
GCTGATATTTTTG
Found at i:36166558 original size:11 final size:11
Alignment explanation
Indices: 36166542--36166584 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
36166532 GATTTCATCG
36166542 ATTTTCTTCTT
1 ATTTTCTTCTT
36166553 ATTTTCTT-TAT
1 ATTTTCTTCT-T
36166564 CGATTTTCTTCTT
1 --ATTTTCTTCTT
36166577 ATTTTCTT
1 ATTTTCTT
36166585 TTTTTAAGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 1 0.04
11 17 0.61
13 9 0.32
14 1 0.04
ACGTcount: A:0.12, C:0.16, G:0.02, T:0.70
Consensus pattern (11 bp):
ATTTTCTTCTT
Found at i:36166565 original size:24 final size:24
Alignment explanation
Indices: 36166538--36166585 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36166528 GATAGATTTC
36166538 ATCGATTTTCTTCTTATTTTCTTT
1 ATCGATTTTCTTCTTATTTTCTTT
36166562 ATCGATTTTCTTCTTATTTTCTTT
1 ATCGATTTTCTTCTTATTTTCTTT
36166586 TTTTAAGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.17, G:0.04, T:0.67
Consensus pattern (24 bp):
ATCGATTTTCTTCTTATTTTCTTT
Found at i:36189329 original size:162 final size:162
Alignment explanation
Indices: 36189062--36189374 Score: 599
Period size: 162 Copynumber: 1.9 Consensus size: 162
36189052 AAGTTATTCC
* *
36189062 ACTAAAGTAATATGACTCAGCTCTCCCCATCATATACCATTATGAAAGCAACTTTACTAAGATCT
1 ACTAAAGTAATATGACTCAGCTCTCCCCATCATATACCATTATGAAAACAACTTTACAAAGATCT
36189127 CATCCAATGACCTTATCATAATCTCTTTGGGATAAATTCGTTCTCCTAATACGATCCTATTTTAT
66 CATCCAATGACCTTATCATAATCTCTTTGGGATAAATTCGTTCTCCTAATACGATCCTATTTTAT
36189192 CTCACAGTAACCATTACATCTCATCCAATATG
131 CTCACAGTAACCATTACATCTCATCCAATATG
*
36189224 ACTAAAGTAATATGACTGAGCTCTCCCCATCATATACCATTATGAAAACAACTTTACAAAGATCT
1 ACTAAAGTAATATGACTCAGCTCTCCCCATCATATACCATTATGAAAACAACTTTACAAAGATCT
36189289 CATCCAATGACCTTATCATAATCTCTTTGGGATAAATTCGTTCTCCTAATACGATCCTATTTTAT
66 CATCCAATGACCTTATCATAATCTCTTTGGGATAAATTCGTTCTCCTAATACGATCCTATTTTAT
36189354 CTCACAGTAACCATTACATCT
131 CTCACAGTAACCATTACATCT
36189375 TCCTTCATGA
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 148 1.00
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.33
Consensus pattern (162 bp):
ACTAAAGTAATATGACTCAGCTCTCCCCATCATATACCATTATGAAAACAACTTTACAAAGATCT
CATCCAATGACCTTATCATAATCTCTTTGGGATAAATTCGTTCTCCTAATACGATCCTATTTTAT
CTCACAGTAACCATTACATCTCATCCAATATG
Found at i:36197288 original size:20 final size:20
Alignment explanation
Indices: 36197246--36197290 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36197236 ACATTAGTAT
* *
36197246 TTTTATTCTGAATTTCAGGA
1 TTTTATCCTGAATTTCAAGA
* *
36197266 TTTTATCCTGAATTTTAATA
1 TTTTATCCTGAATTTCAAGA
36197286 TTTTA
1 TTTTA
36197291 ATTTGGGCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.56
Consensus pattern (20 bp):
TTTTATCCTGAATTTCAAGA
Found at i:36201568 original size:43 final size:43
Alignment explanation
Indices: 36201418--36201587 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 43
36201408 ATATCATACA
* * * * *
36201418 ATGCCAACGTCCTAGACGGGGCCTTACATGTTATCTCATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCG
*** *
36201461 ATGCCATTATCCTAGACAG-GGTCTTACACG-AATCAAATA-CG
1 ATGCCAACGTCCTAGAC-GTGGTCTTACACGTAATCACATATCG
* * * * * *
36201502 ATGTCGATGTCCCAGACATGGTCTTACACGTAACCACATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCG
* * *
36201545 ATGCCAACGTCCTAGATGTGGTCTTACACGAAAACACATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCG
36201588 GATCCTATGT
Statistics
Matches: 99, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
41 25 0.25
42 13 0.13
43 60 0.61
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCG
Found at i:36204368 original size:37 final size:37
Alignment explanation
Indices: 36204316--36204406 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
36204306 TTATTACGAA
*
36204316 GTCTTACCCGAACATAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACATGTAGTCATCGG
36204353 GTCTTACCCGGACATAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACATGTAGTCATCGG
*
36204390 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
36204407 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACATGTAGTCATCGG
Found at i:36204501 original size:48 final size:48
Alignment explanation
Indices: 36204446--36204596 Score: 232
Period size: 48 Copynumber: 3.2 Consensus size: 48
36204436 TATTACAACA
36204446 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** * *
36204494 TTCACATTAGCCATTCGGCTTTACCACATACACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
36204542 TTCACATTAGCCCTTCGGCTTTACCACATATACA-CTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
36204589 TTCACATT
1 TTCACATT
36204597 CATCACATCG
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
47 16 0.18
48 75 0.82
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:36204754 original size:51 final size:50
Alignment explanation
Indices: 36204588--36204829 Score: 420
Period size: 51 Copynumber: 4.9 Consensus size: 50
36204578 CACACATATA
36204588 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
36204637 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT-ATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
*
36204684 TTTCACATTCATCACATCGGCCATTAGGCCATATCACATATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACAC
36204735 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACAC
*
36204786 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
36204830 TATCTCATAC
Statistics
Matches: 186, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 46 0.25
49 41 0.22
51 99 0.53
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (50 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
Found at i:36217393 original size:2 final size:2
Alignment explanation
Indices: 36217386--36217422 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
36217376 ATTTAAAACT
*
36217386 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36217423 CCAAAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:36223242 original size:40 final size:40
Alignment explanation
Indices: 36223177--36223378 Score: 220
Period size: 39 Copynumber: 5.1 Consensus size: 40
36223167 TCGAATGATG
* * *
36223177 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
36223217 TCC-GGCTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
36223255 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
36223295 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
36223335 ACC-GGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
36223374 TCCGG
1 TCCGG
36223379 TTAAATTCTG
Statistics
Matches: 138, Mismatches: 15, Indels: 18
0.81 0.09 0.11
Matches are distributed among these distances:
38 3 0.02
39 88 0.64
40 47 0.34
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:36223312 original size:79 final size:80
Alignment explanation
Indices: 36223177--36223357 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
36223167 TCGAATGATG
* *
36223177 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGCTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGCTAAGATCCGAAGGCATTT
*
36223241 GTGTGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * *
36223255 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCC-GGCTAAGAT-CCGAAGGCA
36223317 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
36223335 ACC-GGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36223358 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 26 0.30
79 61 0.69
80 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGCTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:36223366 original size:79 final size:78
Alignment explanation
Indices: 36223216--36223382 Score: 189
Period size: 79 Copynumber: 2.1 Consensus size: 78
36223206 AAGTGACCAT
* * *
36223216 ATCCGGCTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
1 ATCCGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTG
**
36223280 GTGCGAGTTA-CTAA
65 GAACGAG-TAGCTAA
*
36223294 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC-GGCTATGTCCCGAAGGCAT
1 ATCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
36223357 TTGAACGAGTAGCTAT
63 TGGAACGAGTAGCTAA
36223373 ATCCGGTTAA
1 ATCCGGTTAA
36223383 ATTCTGAAGG
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
78 21 0.28
79 55 0.72
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
ATCCGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTAGCTAA
Found at i:36228375 original size:40 final size:40
Alignment explanation
Indices: 36228304--36228522 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
36228294 GCTCGATTGT
* * * *
36228304 CTTC-GGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
36228343 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
36228383 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
36228423 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
36228463 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAA-GC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
36228503 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAGCCCGGAT
36228523 ACCATTCGAA
Statistics
Matches: 159, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 144 0.91
41 11 0.07
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:36234685 original size:79 final size:81
Alignment explanation
Indices: 36234549--36234731 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
36234539 TCGAATGATG
* *
36234549 TCCGGGCTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCATATCCGGGCTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAGATCCGGGCTAAGATCCGAAGGCATT
36234613 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * *
36234628 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAGATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAGATCCGGGCTAAGAT-CCGAAGGCA
36234690 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
36234708 ACTGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36234732 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAGATCCGGGCTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:36234740 original size:40 final size:39
Alignment explanation
Indices: 36234549--36234733 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
36234539 TCGAATGATG
* * *
36234549 TCCGGGCTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
36234589 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
36234628 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAGA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
36234668 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
36234708 ACTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36234734 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 35 0.27
40 84 0.66
41 9 0.07
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:36234755 original size:79 final size:79
Alignment explanation
Indices: 36234588--36234766 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 79
36234578 AAGTGACCAT
* *
36234588 ATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
**
36234652 GGTGCGAGTTACTAG
65 GGAACGAGTTACTAG
* * *
36234667 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCAT
1 ATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
36234731 TTGAACGAG-TAGCTAT
64 TGGAACGAGTTA-CTAG
*
36234747 ATCC-GGTTAAATTCCGAAGG
1 ATCCGGGTTAAATCCCGAAGG
36234767 TACGTGATTC
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.68
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
ATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTG
GAACGAGTTACTAG
Found at i:36241106 original size:21 final size:21
Alignment explanation
Indices: 36241057--36241106 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
36241047 TTGCCTAAAA
*
36241057 TATAAATTGGATTAAATTGAG
1 TATAAATTGCATTAAATTGAG
*
36241078 TATGAATTGCATTAAATTGATG
1 TATAAATTGCATTAAATTGA-G
36241100 T-TAAATT
1 TATAAATT
36241107 TACTCGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (21 bp):
TATAAATTGCATTAAATTGAG
Found at i:36242286 original size:18 final size:18
Alignment explanation
Indices: 36242263--36242299 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
36242253 AATATGTGAC
36242263 TAACAAGGGTGATGAGAA
1 TAACAAGGGTGATGAGAA
36242281 TAACAAGGGTGATGAGAA
1 TAACAAGGGTGATGAGAA
36242299 T
1 T
36242300 GTGTGATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.32, T:0.19
Consensus pattern (18 bp):
TAACAAGGGTGATGAGAA
Found at i:36243452 original size:29 final size:29
Alignment explanation
Indices: 36243292--36243465 Score: 145
Period size: 29 Copynumber: 6.0 Consensus size: 29
36243282 GTGTTACAAA
* * *
36243292 AAAGGCATCCTTTTAACA-ATATCACCAC
1 AAAGGCTTCCTTTTAACAGAGATCGCCAC
* *
36243320 AAAGGCTCCCTTTTAACAGAGATCGTCAC
1 AAAGGCTTCCTTTTAACAGAGATCGCCAC
** * * * * *
36243349 AAAGGAATGCTTTTAATAGATATTGCCAT
1 AAAGGCTTCCTTTTAACAGAGATCGCCAC
* *
36243378 AAAGCCTTCCTTTTAATAGAGA-CAGCCAC
1 AAAGGCTTCCTTTTAACAGAGATC-GCCAC
* * * *
36243407 AAAGGTTTCCTTATAACAGAAATCGCCAT
1 AAAGGCTTCCTTTTAACAGAGATCGCCAC
* *
36243436 AAAGGCTTCCTTTTAACAAAGATAGCCAC
1 AAAGGCTTCCTTTTAACAGAGATCGCCAC
36243465 A
1 A
36243466 GAGGTGTCCT
Statistics
Matches: 110, Mismatches: 33, Indels: 5
0.74 0.22 0.03
Matches are distributed among these distances:
28 16 0.15
29 93 0.85
30 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (29 bp):
AAAGGCTTCCTTTTAACAGAGATCGCCAC
Found at i:36252036 original size:27 final size:27
Alignment explanation
Indices: 36251999--36252059 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
36251989 TCTGTCAATC
*
36251999 ATTTT-CACTACAAGGATATTTCGGTA
1 ATTTTACACTACAAGGATATTTCGATA
* *
36252025 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGATATTTCGATA
36252052 ATTTTACA
1 ATTTTACA
36252060 AATCGAGGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAAGGATATTTCGATA
Found at i:36252188 original size:53 final size:54
Alignment explanation
Indices: 36252038--36252260 Score: 247
Period size: 53 Copynumber: 4.2 Consensus size: 54
36252028 TTACACTACA
* ** * *
36252038 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTTGGAAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCG
* * * * *
36252092 AGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTCTCGGTAATTTCACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCG
* * * *
36252146 -GGGTATTTTGATAATTTTACAAATTGAGGGAATTTCACTAATTTCAC-AATTG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCG
* * *
36252198 AGGGTATTTCTG-TAATTTTACAAATCGGGGGTACTTC-GATAATTTTACAAATCG
1 AGGGTATTT-TGATAATTTTACAAATCGAGGGTATTTCAG-TAATTTCACAAATCG
36252252 AGGGTATTT
1 AGGGTATTT
36252261 CAGTAATTTC
Statistics
Matches: 143, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 76 0.53
54 63 0.44
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCG
Found at i:36252267 original size:27 final size:27
Alignment explanation
Indices: 36252015--36252269 Score: 255
Period size: 27 Copynumber: 9.5 Consensus size: 27
36252005 ACTACAAGGA
* *
36252015 TATTTCGGTAATTTTAC-ACTACAAGGG
1 TATTTCGGTAATTTTACAAAT-CGAGGG
* *
36252042 TATTTTGATAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
36252069 TGTTTTGGAAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* *
36252096 TGTTTTGGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
36252123 TGTCTCGGTAATTTCACAAATCG-GGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
36252149 TATTTTGATAATTTTACAAATTGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* ** * *
36252176 AATTTCACTAATTTCAC-AATTGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* *
36252202 TATTTCTGTAATTTTACAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* *
36252229 TACTTCGATAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
*
36252256 TATTTCAGTAATTT
1 TATTTCGGTAATTT
36252270 CTCTTTTTTA
Statistics
Matches: 190, Mismatches: 35, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 42 0.22
27 146 0.77
28 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:36252635 original size:28 final size:28
Alignment explanation
Indices: 36252599--36252677 Score: 124
Period size: 28 Copynumber: 2.8 Consensus size: 28
36252589 ACTAATCTCG
*
36252599 TTCACATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
36252627 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
*
36252655 TTCATAT-GCTCTATCAGGCCCAA
1 TTCATATGGC-CCATCAGGCCCAA
36252678 CTACTTCCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.04
28 46 0.96
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.23
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAATCACA
Done.